Psyllid ID: psy224
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | 2.2.26 [Sep-21-2011] | |||||||
| Q9V3P0 | 194 | Peroxiredoxin 1 OS=Drosop | yes | N/A | 0.349 | 0.984 | 0.753 | 3e-86 | |
| Q26695 | 199 | Thioredoxin peroxidase OS | N/A | N/A | 0.349 | 0.959 | 0.697 | 1e-77 | |
| Q6DV14 | 199 | Peroxiredoxin-1 OS=Gecko | N/A | N/A | 0.354 | 0.974 | 0.692 | 2e-76 | |
| P0CB50 | 199 | Peroxiredoxin-1 OS=Gallus | no | N/A | 0.354 | 0.974 | 0.687 | 2e-76 | |
| O08807 | 274 | Peroxiredoxin-4 OS=Mus mu | yes | N/A | 0.367 | 0.733 | 0.641 | 3e-76 | |
| Q9Z0V5 | 273 | Peroxiredoxin-4 OS=Rattus | yes | N/A | 0.367 | 0.736 | 0.641 | 4e-76 | |
| Q6B4U9 | 199 | Peroxiredoxin-1 OS=Myotis | N/A | N/A | 0.354 | 0.974 | 0.692 | 7e-76 | |
| Q06830 | 199 | Peroxiredoxin-1 OS=Homo s | yes | N/A | 0.354 | 0.974 | 0.687 | 1e-75 | |
| Q13162 | 271 | Peroxiredoxin-4 OS=Homo s | no | N/A | 0.367 | 0.741 | 0.631 | 2e-75 | |
| Q63716 | 199 | Peroxiredoxin-1 OS=Rattus | no | N/A | 0.354 | 0.974 | 0.687 | 3e-75 |
| >sp|Q9V3P0|PRDX1_DROME Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 144/191 (75%), Positives = 167/191 (87%)
Query: 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
L+KPAP F G AVVNG FK+IKLS YKG+Y+VLFFYPLDFTFVCPTEIIAFS+ A EF+K
Sbjct: 4 LQKPAPAFAGTAVVNGVFKDIKLSDYKGKYLVLFFYPLDFTFVCPTEIIAFSESAAEFRK 63
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
IN +VI CSTDS F+HLAW N PR +GGLG M IP+L+DKSM +AR YGVL+EETGIP+R
Sbjct: 64 INCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLADKSMKVARDYGVLDEETGIPFR 123
Query: 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADP 536
GLFIIDDKQNLRQIT+NDLPVGRSV+ETLRLVQAFQ+ ++GEVCPA WKPG KTM ADP
Sbjct: 124 GLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQYTDKYGEVCPANWKPGQKTMVADP 183
Query: 537 SGSQEYFKTVN 547
+ S+EYF+T +
Sbjct: 184 TKSKEYFETTS 194
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. As a reducing substrate, thioredoxin 2 is preferred over thioredoxin 1. Drosophila melanogaster (taxid: 7227) EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5 |
| >sp|Q26695|TDX_TRYBR Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/192 (69%), Positives = 159/192 (82%), Gaps = 1/192 (0%)
Query: 357 LEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
L PAP F A++ NG FK + L+ Y+G++VVLFFYPLDFTFVCPTEI FSDR +EF
Sbjct: 8 LNHPAPHFNEVALMPNGTFKKVDLASYRGKWVVLFFYPLDFTFVCPTEICQFSDRVKEFN 67
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
++ +VIACS DS FSHLAW N+ R KGGLG M IPIL+DK+ SI ++YGVL EE G+ Y
Sbjct: 68 DVDCEVIACSMDSEFSHLAWTNVERKKGGLGTMNIPILADKTKSIMKAYGVLKEEDGVAY 127
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RGLFIID +QNLRQITINDLPVGR+VDETLRLV+AFQFV +HGEVCPA WKPGSKTMKAD
Sbjct: 128 RGLFIIDPQQNLRQITINDLPVGRNVDETLRLVKAFQFVEKHGEVCPANWKPGSKTMKAD 187
Query: 536 PSGSQEYFKTVN 547
P+GSQ+YF ++N
Sbjct: 188 PNGSQDYFSSMN 199
|
Antioxidant. Trypanosoma brucei rhodesiense (taxid: 31286) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q6DV14|PRDX1_GECJA Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/195 (69%), Positives = 156/195 (80%), Gaps = 1/195 (0%)
Query: 350 MRDASYALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFS 408
M + + K AP+F+ AV+ +GQFK IKLS YKG+YVVLFFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAYIGKLAPDFQATAVMPDGQFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS 60
Query: 409 DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLN 468
DR+EEF+KIN +VI S DSHF HLAW N P+ +GGLG M IP++SD IA+ YG+L
Sbjct: 61 DRSEEFRKINCEVIGASVDSHFCHLAWINTPKKQGGLGSMHIPLVSDTKRVIAKDYGILK 120
Query: 469 EETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
E+ GI YRGLFIIDDK LRQITINDLPVGRSVDETLRLVQAFQF +HGEVCPAGW+PG
Sbjct: 121 EDEGISYRGLFIIDDKGTLRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWQPG 180
Query: 529 SKTMKADPSGSQEYF 543
S T+K D S+EYF
Sbjct: 181 SDTIKPDVQKSKEYF 195
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2) (By similarity). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation. Gecko japonicus (taxid: 146911) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P0CB50|PRDX1_CHICK Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/195 (68%), Positives = 155/195 (79%), Gaps = 1/195 (0%)
Query: 350 MRDASYALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFS 408
M + KPAP+F AV+ +GQFK+IKLS Y+G+YVV FFYPLDFTFVCPTEIIA+S
Sbjct: 1 MSSGKAFIGKPAPDFTATAVMPDGQFKDIKLSDYRGKYVVFFFYPLDFTFVCPTEIIAYS 60
Query: 409 DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLN 468
DRA+EFKKIN ++I S DSHF HLAW N P+ +GGLG M IP++SD IA+ YGVL
Sbjct: 61 DRADEFKKINCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLK 120
Query: 469 EETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
E+ GI YRGLFIID+K LRQITINDLPVGRSVDETLRLVQAFQF +HGEVCPAGWKPG
Sbjct: 121 EDEGIAYRGLFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 529 SKTMKADPSGSQEYF 543
S T+K D S+EYF
Sbjct: 181 SDTIKPDVQKSKEYF 195
|
Involved in redox regulation of the cell (By similarity). Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin (By similarity). May play an important role in eliminating peroxides generated during metabolism (By similarity). Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2) (By similarity). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|O08807|PRDX4_MOUSE Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 129/201 (64%), Positives = 160/201 (79%)
Query: 347 DQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
D ++ + + KPAP +EG AV+NG+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIA
Sbjct: 74 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 133
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
F DR EEFK INT+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV
Sbjct: 134 FGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGV 193
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
E++G RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWK
Sbjct: 194 YLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWK 253
Query: 527 PGSKTMKADPSGSQEYFKTVN 547
PGS+T+ DP+G +YF +N
Sbjct: 254 PGSETIIPDPAGKLKYFDKLN 274
|
Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q9Z0V5|PRDX4_RAT Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 129/201 (64%), Positives = 160/201 (79%)
Query: 347 DQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
D ++ + + KPAP +EG AV+NG+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIA
Sbjct: 73 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 132
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
F DR EEFK INT+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV
Sbjct: 133 FGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGV 192
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
E++G RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWK
Sbjct: 193 YLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWK 252
Query: 527 PGSKTMKADPSGSQEYFKTVN 547
PGS+T+ DP+G +YF +N
Sbjct: 253 PGSETIIPDPAGKLKYFDKLN 273
|
Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q6B4U9|PRDX1_MYOLU Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 135/195 (69%), Positives = 154/195 (78%), Gaps = 1/195 (0%)
Query: 350 MRDASYALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFS 408
M + + PAP F+ AV+ +GQFK+I LS YKG+YVV FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 409 DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLN 468
DRAEEFKKIN QVI S DSHF HLAW N P+ +GGLG M IP++SD +IA+ YGVL
Sbjct: 61 DRAEEFKKINCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK 120
Query: 469 EETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
+ GI +RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQF +HGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 529 SKTMKADPSGSQEYF 543
S T+K D S+EYF
Sbjct: 181 SDTIKPDVQKSKEYF 195
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2) (By similarity). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation. Myotis lucifugus (taxid: 59463) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q06830|PRDX1_HUMAN Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 134/195 (68%), Positives = 154/195 (78%), Gaps = 1/195 (0%)
Query: 350 MRDASYALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFS 408
M + + PAP F+ AV+ +GQFK+I LS YKG+YVV FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 409 DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLN 468
DRAEEFKK+N QVI S DSHF HLAW N P+ +GGLG M IP++SD +IA+ YGVL
Sbjct: 61 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK 120
Query: 469 EETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
+ GI +RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQF +HGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 529 SKTMKADPSGSQEYF 543
S T+K D S+EYF
Sbjct: 181 SDTIKPDVQKSKEYF 195
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q13162|PRDX4_HUMAN Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 127/201 (63%), Positives = 160/201 (79%)
Query: 347 DQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
D ++ + + KPAP +EG AV++G+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIA
Sbjct: 71 DHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 130
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
F DR EEF+ INT+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV
Sbjct: 131 FGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGV 190
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
E++G RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWK
Sbjct: 191 YLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWK 250
Query: 527 PGSKTMKADPSGSQEYFKTVN 547
PGS+T+ DP+G +YF +N
Sbjct: 251 PGSETIIPDPAGKLKYFDKLN 271
|
Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q63716|PRDX1_RAT Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/195 (68%), Positives = 154/195 (78%), Gaps = 1/195 (0%)
Query: 350 MRDASYALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFS 408
M + + PAP F+ AV+ +GQFK+I LS YKG+YVV FFYPLDFTFVCPTEIIAFS
Sbjct: 1 MSSGNAKIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS 60
Query: 409 DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLN 468
DRAEEFKK+N QVI S DSHF HLAW N P+ +GGLG M IP++SD +IA+ YGVL
Sbjct: 61 DRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK 120
Query: 469 EETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
+ GI +RGLFIIDDK LRQITINDLPVGRSVDE LRLVQAFQF +HGEVCPAGWKPG
Sbjct: 121 ADEGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPG 180
Query: 529 SKTMKADPSGSQEYF 543
S T+K D + S+EYF
Sbjct: 181 SDTIKPDVNKSKEYF 195
|
Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | ||||||
| 156542034 | 195 | PREDICTED: peroxiredoxin 1-like [Nasonia | 0.345 | 0.969 | 0.788 | 6e-88 | |
| 225906720 | 198 | thioredoxin peroxidase [Scylla paramamos | 0.351 | 0.969 | 0.776 | 4e-87 | |
| 189008694 | 198 | peroxiredoxin [Eurypanopeus depressus] | 0.351 | 0.969 | 0.755 | 3e-86 | |
| 209418816 | 198 | peroxiredoxin [Portunus trituberculatus] | 0.351 | 0.969 | 0.765 | 5e-86 | |
| 242267000 | 198 | peroxiredoxin [Fenneropenaeus indicus] | 0.361 | 1.0 | 0.732 | 9e-86 | |
| 383851715 | 195 | PREDICTED: peroxiredoxin 1-like [Megachi | 0.345 | 0.969 | 0.777 | 2e-85 | |
| 350397388 | 195 | PREDICTED: peroxiredoxin 1-like [Bombus | 0.345 | 0.969 | 0.772 | 4e-85 | |
| 158853196 | 198 | peroxiredoxin [Marsupenaeus japonicus] | 0.361 | 1.0 | 0.732 | 5e-85 | |
| 260875744 | 198 | peroxiredoxin [Litopenaeus vannamei] | 0.361 | 1.0 | 0.727 | 6e-85 | |
| 77955972 | 198 | thioredoxin peroxidase [Fenneropenaeus c | 0.361 | 1.0 | 0.722 | 7e-85 |
| >gi|156542034|ref|XP_001601016.1| PREDICTED: peroxiredoxin 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 149/189 (78%), Positives = 170/189 (89%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
A++KPAPEF+G AVVNGQFK+IKLS YKG+YVVLFFYPLDFTFVCPTEIIAFSDRA+EF+
Sbjct: 5 AIQKPAPEFKGTAVVNGQFKDIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAKEFE 64
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
I Q+IA STDSHFSHLAW N PR +GGLG+M IP+L+DKS IAR YGVL+E++G+P+
Sbjct: 65 AIGVQLIAASTDSHFSHLAWINTPRKQGGLGEMQIPLLADKSAKIARDYGVLDEDSGVPF 124
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RGLFIID KQNLRQ+TINDLPVGRSVDETLRLVQAFQF EHGEVCPAGWKPG KTMK D
Sbjct: 125 RGLFIIDRKQNLRQVTINDLPVGRSVDETLRLVQAFQFTDEHGEVCPAGWKPGKKTMKPD 184
Query: 536 PSGSQEYFK 544
P G+++YFK
Sbjct: 185 PVGAKDYFK 193
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|225906720|gb|ACO36036.1| thioredoxin peroxidase [Scylla paramamosain] gi|403044811|gb|AFR11898.1| thioredoxin peroxidase [Scylla paramamosain] | Back alignment and taxonomy information |
|---|
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 149/192 (77%), Positives = 168/192 (87%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
AL KPAP F G AVV GQFK+I L YKG+Y+VLFFYPLDFTFVCPTEIIAFS+RAEEF
Sbjct: 7 ALTKPAPAFSGTAVVGGQFKDISLEDYKGKYLVLFFYPLDFTFVCPTEIIAFSERAEEFH 66
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
KI +V+ACSTDSHFSHLAW N PR +GGLG M IP+L+DKSM I+++YGVL ++ G+ +
Sbjct: 67 KIGCEVVACSTDSHFSHLAWVNTPRKEGGLGQMNIPLLADKSMEISKAYGVLKDDAGLSF 126
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RGLFIIDDKQNLRQITINDLPVGR VDETLRLVQAFQFV +HGEVCPAGWKPGSK+MKAD
Sbjct: 127 RGLFIIDDKQNLRQITINDLPVGRDVDETLRLVQAFQFVDKHGEVCPAGWKPGSKSMKAD 186
Query: 536 PSGSQEYFKTVN 547
P GS+EYFK VN
Sbjct: 187 PVGSKEYFKAVN 198
|
Source: Scylla paramamosain Species: Scylla paramamosain Genus: Scylla Family: Portunidae Order: Decapoda Class: Malacostraca Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189008694|gb|ACD68589.1| peroxiredoxin [Eurypanopeus depressus] | Back alignment and taxonomy information |
|---|
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 145/192 (75%), Positives = 169/192 (88%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
AL KPAP F G AVV+GQFK+I L YKG+Y+VLFFYPLDFTFVCPTEIIAFS+RA+EF+
Sbjct: 7 ALTKPAPAFSGTAVVDGQFKDISLKDYKGKYLVLFFYPLDFTFVCPTEIIAFSERADEFR 66
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
K+ +V+ACSTDSHFSHLAW N PR +GGLG M IP+L+DKSM ++++YGVL ++ G+ +
Sbjct: 67 KLGCEVVACSTDSHFSHLAWVNTPRKEGGLGKMNIPLLADKSMEVSKAYGVLKDDAGLSF 126
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RGLFIID QNLRQITINDLPVGR VDETLRLVQAFQFV EHGEVCPAGW+PGSKTMKAD
Sbjct: 127 RGLFIIDRDQNLRQITINDLPVGRDVDETLRLVQAFQFVDEHGEVCPAGWRPGSKTMKAD 186
Query: 536 PSGSQEYFKTVN 547
PSGS+EYF+ VN
Sbjct: 187 PSGSKEYFQAVN 198
|
Source: Eurypanopeus depressus Species: Eurypanopeus depressus Genus: Eurypanopeus Family: Panopeidae Order: Decapoda Class: Malacostraca Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|209418816|gb|ACI46625.1| peroxiredoxin [Portunus trituberculatus] | Back alignment and taxonomy information |
|---|
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 147/192 (76%), Positives = 166/192 (86%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
AL KPAP F G AVVNGQFK+I L Y G+Y+VLFFYPLDFTFVCPTEIIAFS+RAEEF+
Sbjct: 7 ALTKPAPAFSGTAVVNGQFKDISLKDYNGKYLVLFFYPLDFTFVCPTEIIAFSERAEEFR 66
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
KI +V+ACSTDSHFSHLAW N PR GGLG M IP+L+DKSM I+++YGVL ++ G+ +
Sbjct: 67 KIGCEVVACSTDSHFSHLAWVNTPRKDGGLGQMNIPLLADKSMEISKAYGVLKDDAGLSF 126
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RGLFIIDD QNLRQITINDLPVGR VDE LRLVQAFQFV +HGEVCPAGWKPGSK+MKAD
Sbjct: 127 RGLFIIDDHQNLRQITINDLPVGRDVDEALRLVQAFQFVDKHGEVCPAGWKPGSKSMKAD 186
Query: 536 PSGSQEYFKTVN 547
P GS+EYFK VN
Sbjct: 187 PVGSKEYFKAVN 198
|
Source: Portunus trituberculatus Species: Portunus trituberculatus Genus: Portunus Family: Portunidae Order: Decapoda Class: Malacostraca Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242267000|gb|ACS91344.1| peroxiredoxin [Fenneropenaeus indicus] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 145/198 (73%), Positives = 168/198 (84%)
Query: 350 MRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD 409
M + A+ KPAP F+G AVV+GQFK I L YKG+YV+ FFYPLDFTFVCPTEIIAFSD
Sbjct: 1 MSNTVPAIGKPAPVFKGTAVVDGQFKEISLEDYKGKYVIFFFYPLDFTFVCPTEIIAFSD 60
Query: 410 RAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNE 469
R EEF+KI +V+ACSTDSHFSHLAW N PR +GGLG M IP+L+DKSM +A++YGVL E
Sbjct: 61 RVEEFRKIGCEVVACSTDSHFSHLAWINTPRKEGGLGTMKIPLLADKSMEVAKAYGVLKE 120
Query: 470 ETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGS 529
+ GI +RGLF+ID KQNLRQ+TINDLPVGR VDETLRLVQAFQF EHGEVCPAGWKPG+
Sbjct: 121 DEGIAFRGLFVIDGKQNLRQVTINDLPVGRDVDETLRLVQAFQFTDEHGEVCPAGWKPGA 180
Query: 530 KTMKADPSGSQEYFKTVN 547
KTMKADP+GS+EYF+ N
Sbjct: 181 KTMKADPAGSKEYFQNEN 198
|
Source: Fenneropenaeus indicus Species: Fenneropenaeus indicus Genus: Fenneropenaeus Family: Penaeidae Order: Decapoda Class: Malacostraca Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383851715|ref|XP_003701377.1| PREDICTED: peroxiredoxin 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 147/189 (77%), Positives = 167/189 (88%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
A++KPAP F G AVVNGQFK+I LS YKG+YVVLFFYPLDFTFVCPTEIIAFSDRA EF+
Sbjct: 5 AIQKPAPAFRGTAVVNGQFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAHEFE 64
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
+I ++IA STDSHFSHLAW N PR +GGLG+M IP+L+DKS IAR YGVL+EETG+P+
Sbjct: 65 QIGCKLIAASTDSHFSHLAWVNTPRKQGGLGEMNIPLLADKSTKIARDYGVLDEETGVPF 124
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RGLFIIDDKQ+LRQ+TINDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWKPG KTMK D
Sbjct: 125 RGLFIIDDKQHLRQVTINDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKKTMKPD 184
Query: 536 PSGSQEYFK 544
GS+EYFK
Sbjct: 185 VVGSKEYFK 193
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350397388|ref|XP_003484863.1| PREDICTED: peroxiredoxin 1-like [Bombus impatiens] gi|227976948|gb|ACP44066.1| 2-cys peroxiredoxin [Bombus ignitus] gi|227976950|gb|ACP44067.1| 2-cys peroxiredoxin [Bombus ignitus] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 146/189 (77%), Positives = 165/189 (87%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
AL+KPAP F G AVV G+FK I LS YKG+YVVLFFYPLDFTFVCPTEIIAFSDRAEEF+
Sbjct: 5 ALQKPAPAFHGTAVVKGEFKEISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFE 64
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
KI ++IA STDSHFSHLAW N PR +GGLG+M IP+L+DKS IAR YGVL+EE+G+P+
Sbjct: 65 KIGCKLIAASTDSHFSHLAWVNTPRKQGGLGEMNIPLLADKSTKIARDYGVLDEESGVPF 124
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RGLFIIDDKQ LRQ+TINDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWKPG KTMK D
Sbjct: 125 RGLFIIDDKQKLRQVTINDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKKTMKPD 184
Query: 536 PSGSQEYFK 544
+ S+EYFK
Sbjct: 185 VAASKEYFK 193
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158853196|dbj|BAF91446.1| peroxiredoxin [Marsupenaeus japonicus] | Back alignment and taxonomy information |
|---|
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 145/198 (73%), Positives = 167/198 (84%)
Query: 350 MRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD 409
M + A+ K AP F+G AVV+GQFK I L YKG+YV+ FFYPLDFTFVCPTEIIAFSD
Sbjct: 1 MSNTVPAIGKRAPVFKGTAVVDGQFKEISLEDYKGKYVIFFFYPLDFTFVCPTEIIAFSD 60
Query: 410 RAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNE 469
R EEFKKI +V+ACSTDSHFSHLAW N PR +GGLG M IP+L+DKSM +A++YGVL E
Sbjct: 61 RVEEFKKIGCEVVACSTDSHFSHLAWTNTPRKEGGLGTMKIPLLADKSMEVAKAYGVLKE 120
Query: 470 ETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGS 529
+ GI +RGLF+ID KQNLRQ+TINDLPVGR VDETLRLVQAFQF EHGEVCPAGWKPG+
Sbjct: 121 DEGIAFRGLFVIDGKQNLRQVTINDLPVGRDVDETLRLVQAFQFTDEHGEVCPAGWKPGA 180
Query: 530 KTMKADPSGSQEYFKTVN 547
KTMKADP+GS+EYF+ N
Sbjct: 181 KTMKADPTGSKEYFQNEN 198
|
Source: Marsupenaeus japonicus Species: Marsupenaeus japonicus Genus: Marsupenaeus Family: Penaeidae Order: Decapoda Class: Malacostraca Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|260875744|gb|ACX53642.1| peroxiredoxin [Litopenaeus vannamei] | Back alignment and taxonomy information |
|---|
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 168/198 (84%)
Query: 350 MRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD 409
M + A+ KPAP F+G AVV+GQFK I L YKG+YV+ FFYPLDFTFVCPTEIIAFSD
Sbjct: 1 MSNTVPAIGKPAPIFKGTAVVDGQFKEISLEDYKGKYVIFFFYPLDFTFVCPTEIIAFSD 60
Query: 410 RAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNE 469
R EEF+KI +V+ACSTDSHFSHLAW N PR +GGLG M IP+L+DKSM +A++YGVL +
Sbjct: 61 RVEEFRKIGCEVVACSTDSHFSHLAWINTPRKEGGLGTMKIPLLADKSMEVAKAYGVLKD 120
Query: 470 ETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGS 529
+ GI +RGLF+ID KQNLRQ+TINDLPVGR VDETLRLVQAF+F EHGEVCPAGWKPGS
Sbjct: 121 DEGIAFRGLFVIDGKQNLRQVTINDLPVGRDVDETLRLVQAFKFTDEHGEVCPAGWKPGS 180
Query: 530 KTMKADPSGSQEYFKTVN 547
KTMKADP+GS+EYF+ N
Sbjct: 181 KTMKADPAGSKEYFQNEN 198
|
Source: Litopenaeus vannamei Species: Litopenaeus vannamei Genus: Litopenaeus Family: Penaeidae Order: Decapoda Class: Malacostraca Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|77955972|gb|ABB05538.1| thioredoxin peroxidase [Fenneropenaeus chinensis] | Back alignment and taxonomy information |
|---|
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 143/198 (72%), Positives = 168/198 (84%)
Query: 350 MRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD 409
M + A+ KPAP F+G AVV+GQFK I L YKG+YV+ FFYPLD+TFVCPTEIIAFSD
Sbjct: 1 MSNTVPAIGKPAPVFKGTAVVDGQFKEISLEDYKGKYVIFFFYPLDYTFVCPTEIIAFSD 60
Query: 410 RAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNE 469
R EEF+KI +V+ACSTDSHFSHLAW N PR +GGLG M IP+L+DKSM +A++YGVL E
Sbjct: 61 RVEEFRKIGCEVVACSTDSHFSHLAWINTPRKEGGLGTMKIPLLADKSMEVAKTYGVLKE 120
Query: 470 ETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGS 529
+ GI +RGLF+ID KQ+LRQ+TINDLPVGR VDETLRLVQAFQF EHGEVCPAGWKPG+
Sbjct: 121 DEGIAFRGLFVIDGKQDLRQVTINDLPVGRDVDETLRLVQAFQFTDEHGEVCPAGWKPGA 180
Query: 530 KTMKADPSGSQEYFKTVN 547
KTMKADP+GS+EYF+ N
Sbjct: 181 KTMKADPAGSKEYFQNEN 198
|
Source: Fenneropenaeus chinensis Species: Fenneropenaeus chinensis Genus: Fenneropenaeus Family: Penaeidae Order: Decapoda Class: Malacostraca Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | ||||||
| FB|FBgn0040309 | 194 | Jafrac1 "thioredoxin peroxidas | 0.349 | 0.984 | 0.753 | 3.8e-78 | |
| WB|WBGene00006434 | 199 | prdx-2 [Caenorhabditis elegans | 0.354 | 0.974 | 0.728 | 2e-72 | |
| UNIPROTKB|F1NNS8 | 288 | PRDX4 "Uncharacterized protein | 0.367 | 0.697 | 0.646 | 2.6e-70 | |
| UNIPROTKB|E2RNL3 | 272 | PRDX4 "Uncharacterized protein | 0.367 | 0.738 | 0.641 | 2.6e-70 | |
| MGI|MGI:1859815 | 274 | Prdx4 "peroxiredoxin 4" [Mus m | 0.367 | 0.733 | 0.641 | 4.3e-70 | |
| RGD|620043 | 273 | Prdx4 "peroxiredoxin 4" [Rattu | 0.367 | 0.736 | 0.641 | 4.3e-70 | |
| UNIPROTKB|G1K326 | 201 | PRDX1 "Peroxiredoxin-1" [Gallu | 0.338 | 0.920 | 0.715 | 5.5e-70 | |
| UNIPROTKB|P0CB50 | 199 | PRDX1 "Peroxiredoxin-1" [Gallu | 0.338 | 0.929 | 0.715 | 5.5e-70 | |
| ZFIN|ZDB-GENE-030131-1096 | 260 | prdx4 "peroxiredoxin 4" [Danio | 0.367 | 0.773 | 0.646 | 7e-70 | |
| UNIPROTKB|F1SQ01 | 272 | PRDX4 "Uncharacterized protein | 0.367 | 0.738 | 0.636 | 8.9e-70 |
| FB|FBgn0040309 Jafrac1 "thioredoxin peroxidase 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 144/191 (75%), Positives = 167/191 (87%)
Query: 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
L+KPAP F G AVVNG FK+IKLS YKG+Y+VLFFYPLDFTFVCPTEIIAFS+ A EF+K
Sbjct: 4 LQKPAPAFAGTAVVNGVFKDIKLSDYKGKYLVLFFYPLDFTFVCPTEIIAFSESAAEFRK 63
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
IN +VI CSTDS F+HLAW N PR +GGLG M IP+L+DKSM +AR YGVL+EETGIP+R
Sbjct: 64 INCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLADKSMKVARDYGVLDEETGIPFR 123
Query: 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADP 536
GLFIIDDKQNLRQIT+NDLPVGRSV+ETLRLVQAFQ+ ++GEVCPA WKPG KTM ADP
Sbjct: 124 GLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQYTDKYGEVCPANWKPGQKTMVADP 183
Query: 537 SGSQEYFKTVN 547
+ S+EYF+T +
Sbjct: 184 TKSKEYFETTS 194
|
|
| WB|WBGene00006434 prdx-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 142/195 (72%), Positives = 160/195 (82%)
Query: 351 RDASYA-LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD 409
R S A + KPAP+F+ QAVV+G+F ++ LS YKG+YVVLFFYPLDFTFVCPTEIIAFSD
Sbjct: 3 RQMSKAFIGKPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSD 62
Query: 410 RAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNE 469
RAEEFK INT V+A STDS FSHLAW N PR GGLG+M IP+L+D + I+R YGVL E
Sbjct: 63 RAEEFKAINTVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKE 122
Query: 470 ETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGS 529
+ GI +RGLFIID QNLRQITINDLPVGRSVDETLRLVQAFQFV +HGEVCPAGW PGS
Sbjct: 123 DEGIAFRGLFIIDPSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHGEVCPAGWTPGS 182
Query: 530 KTMKADPSGSQEYFK 544
T+K SQEYFK
Sbjct: 183 DTIKPGVKESQEYFK 197
|
|
| UNIPROTKB|F1NNS8 PRDX4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 130/201 (64%), Positives = 161/201 (80%)
Query: 347 DQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
D ++ + + KPAP +EG AV+NG+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIA
Sbjct: 88 DHSLHLSQAKISKPAPYWEGTAVINGEFKELKLTDYEGKYLVFFFYPLDFTFVCPTEIIA 147
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
FSDR EEF+ INT+V+ACS DS F+HLAW N PR +GGLG M IP+LSD + I++ YGV
Sbjct: 148 FSDRIEEFRAINTEVVACSVDSKFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGV 207
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
E+ G RGLFIIDDK+ LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWK
Sbjct: 208 YLEDQGHALRGLFIIDDKRILRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWK 267
Query: 527 PGSKTMKADPSGSQEYFKTVN 547
PGS+T+ DP+G +YF +N
Sbjct: 268 PGSETIIPDPAGKLKYFDKLN 288
|
|
| UNIPROTKB|E2RNL3 PRDX4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 129/201 (64%), Positives = 159/201 (79%)
Query: 347 DQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
D ++ + + KPAP +EG AV+NG+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIA
Sbjct: 72 DHSLHHSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 131
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
F DR EEFK INT+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV
Sbjct: 132 FGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQISKDYGV 191
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
E++G RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ HGEVCPAGWK
Sbjct: 192 YLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGWK 251
Query: 527 PGSKTMKADPSGSQEYFKTVN 547
PGS+T+ DP+G +YF +N
Sbjct: 252 PGSETIIPDPAGKLKYFDKLN 272
|
|
| MGI|MGI:1859815 Prdx4 "peroxiredoxin 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 129/201 (64%), Positives = 160/201 (79%)
Query: 347 DQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
D ++ + + KPAP +EG AV+NG+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIA
Sbjct: 74 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 133
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
F DR EEFK INT+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV
Sbjct: 134 FGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGV 193
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
E++G RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWK
Sbjct: 194 YLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWK 253
Query: 527 PGSKTMKADPSGSQEYFKTVN 547
PGS+T+ DP+G +YF +N
Sbjct: 254 PGSETIIPDPAGKLKYFDKLN 274
|
|
| RGD|620043 Prdx4 "peroxiredoxin 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 129/201 (64%), Positives = 160/201 (79%)
Query: 347 DQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
D ++ + + KPAP +EG AV+NG+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIA
Sbjct: 73 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 132
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
F DR EEFK INT+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV
Sbjct: 133 FGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGV 192
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
E++G RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWK
Sbjct: 193 YLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWK 252
Query: 527 PGSKTMKADPSGSQEYFKTVN 547
PGS+T+ DP+G +YF +N
Sbjct: 253 PGSETIIPDPAGKLKYFDKLN 273
|
|
| UNIPROTKB|G1K326 PRDX1 "Peroxiredoxin-1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 133/186 (71%), Positives = 153/186 (82%)
Query: 359 KPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
KPAP+F AV+ +GQFK+IKLS Y+G+YVV FFYPLDFTFVCPTEIIA+SDRA+EFKKI
Sbjct: 12 KPAPDFTATAVMPDGQFKDIKLSDYRGKYVVFFFYPLDFTFVCPTEIIAYSDRADEFKKI 71
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
N ++I S DSHF HLAW N P+ +GGLG M IP++SD IA+ YGVL E+ GI YRG
Sbjct: 72 NCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIAYRG 131
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPS 537
LFIID+K LRQITINDLPVGRSVDETLRLVQAFQF +HGEVCPAGWKPGS T+K D
Sbjct: 132 LFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQ 191
Query: 538 GSQEYF 543
S+EYF
Sbjct: 192 KSKEYF 197
|
|
| UNIPROTKB|P0CB50 PRDX1 "Peroxiredoxin-1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 133/186 (71%), Positives = 153/186 (82%)
Query: 359 KPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
KPAP+F AV+ +GQFK+IKLS Y+G+YVV FFYPLDFTFVCPTEIIA+SDRA+EFKKI
Sbjct: 10 KPAPDFTATAVMPDGQFKDIKLSDYRGKYVVFFFYPLDFTFVCPTEIIAYSDRADEFKKI 69
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
N ++I S DSHF HLAW N P+ +GGLG M IP++SD IA+ YGVL E+ GI YRG
Sbjct: 70 NCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIAYRG 129
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPS 537
LFIID+K LRQITINDLPVGRSVDETLRLVQAFQF +HGEVCPAGWKPGS T+K D
Sbjct: 130 LFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQ 189
Query: 538 GSQEYF 543
S+EYF
Sbjct: 190 KSKEYF 195
|
|
| ZFIN|ZDB-GENE-030131-1096 prdx4 "peroxiredoxin 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 130/201 (64%), Positives = 157/201 (78%)
Query: 347 DQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
D ++ + + KPAP +EG AV+NG+FK +KLS YKG+Y+V FFYPLDFTFVCPTEIIA
Sbjct: 60 DHSLHLSKAKISKPAPHWEGTAVINGEFKELKLSDYKGKYLVFFFYPLDFTFVCPTEIIA 119
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
FSDR EF+ IN +V+ACS DS F+HLAW N PR +GGLG M IP+LSD + I++ YGV
Sbjct: 120 FSDRVHEFQAINAEVVACSVDSQFTHLAWINTPRKQGGLGPMKIPLLSDLTHQISKDYGV 179
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
E+ G RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWK
Sbjct: 180 FLEDQGHTLRGLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWK 239
Query: 527 PGSKTMKADPSGSQEYFKTVN 547
PGS T+ DP+G +YF +N
Sbjct: 240 PGSDTIIPDPAGKLKYFDKLN 260
|
|
| UNIPROTKB|F1SQ01 PRDX4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 128/201 (63%), Positives = 160/201 (79%)
Query: 347 DQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
D ++ + + KPAP +EG AV+NG+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIA
Sbjct: 72 DHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 131
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
F DR EEF+ INT+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV
Sbjct: 132 FGDRIEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGV 191
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
E++G RGLFIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWK
Sbjct: 192 YLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWK 251
Query: 527 PGSKTMKADPSGSQEYFKTVN 547
PGS+T+ DP+G +YF +N
Sbjct: 252 PGSETIIPDPAGKLKYFDKLN 272
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9V3P0 | PRDX1_DROME | 1, ., 1, 1, ., 1, ., 1, 5 | 0.7539 | 0.3491 | 0.9845 | yes | N/A |
| O74887 | TSA1_SCHPO | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6210 | 0.3436 | 0.9791 | yes | N/A |
| Q6ER94 | BAS1_ORYSJ | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5797 | 0.3400 | 0.7126 | yes | N/A |
| Q06830 | PRDX1_HUMAN | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6871 | 0.3546 | 0.9748 | yes | N/A |
| P34760 | TSA1_YEAST | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5654 | 0.3491 | 0.9744 | yes | N/A |
| Q9Z0V5 | PRDX4_RAT | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6417 | 0.3674 | 0.7362 | yes | N/A |
| Q555L5 | PRDX4_DICDI | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6020 | 0.3491 | 0.7374 | yes | N/A |
| Q9C5R8 | BAS1B_ARATH | 1, ., 1, 1, ., 1, ., 1, 5 | 0.5904 | 0.3400 | 0.6813 | yes | N/A |
| Q9BGI2 | PRDX4_BOVIN | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6544 | 0.3491 | 0.6970 | yes | N/A |
| Q5E947 | PRDX1_BOVIN | 1, ., 1, 1, ., 1, ., 1, 5 | 0.7173 | 0.3345 | 0.9195 | yes | N/A |
| O08807 | PRDX4_MOUSE | 1, ., 1, 1, ., 1, ., 1, 5 | 0.6417 | 0.3674 | 0.7335 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.11.1.15 | 0.737 |
| 3rd Layer | 1.11.1 | 0.691 |
| 3rd Layer | 2.7.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 547 | |||
| cd03015 | 173 | cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, | 1e-112 | |
| PTZ00253 | 199 | PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi | 1e-105 | |
| COG0450 | 194 | COG0450, AhpC, Peroxiredoxin [Posttranslational mo | 2e-92 | |
| cd07777 | 448 | cd07777, FGGY_SHK_like, sedoheptulokinase-like pro | 6e-92 | |
| cd02971 | 140 | cd02971, PRX_family, Peroxiredoxin (PRX) family; c | 2e-55 | |
| PRK15000 | 200 | PRK15000, PRK15000, peroxidase; Provisional | 1e-54 | |
| TIGR03137 | 187 | TIGR03137, AhpC, peroxiredoxin | 8e-54 | |
| PTZ00137 | 261 | PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision | 7e-52 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 6e-47 | |
| cd03016 | 203 | cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c | 2e-46 | |
| PRK13189 | 222 | PRK13189, PRK13189, peroxiredoxin; Provisional | 1e-42 | |
| PRK13190 | 202 | PRK13190, PRK13190, putative peroxiredoxin; Provis | 6e-39 | |
| PRK10382 | 187 | PRK10382, PRK10382, alkyl hydroperoxide reductase | 1e-38 | |
| PRK13191 | 215 | PRK13191, PRK13191, putative peroxiredoxin; Provis | 4e-34 | |
| COG1225 | 157 | COG1225, Bcp, Peroxiredoxin [Posttranslational mod | 2e-31 | |
| cd03018 | 149 | cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family | 2e-29 | |
| cd03017 | 140 | cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact | 4e-29 | |
| PRK13599 | 215 | PRK13599, PRK13599, putative peroxiredoxin; Provis | 2e-27 | |
| cd00366 | 435 | cd00366, FGGY, FGGY family of carbohydrate kinases | 2e-25 | |
| cd07777 | 448 | cd07777, FGGY_SHK_like, sedoheptulokinase-like pro | 7e-24 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 1e-13 | |
| cd03014 | 143 | cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, | 3e-11 | |
| pfam10417 | 40 | pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys | 6e-11 | |
| COG1070 | 502 | COG1070, XylB, Sugar (pentulose and hexulose) kina | 5e-10 | |
| COG2077 | 158 | COG2077, Tpx, Peroxiredoxin [Posttranslational mod | 2e-07 | |
| COG1070 | 502 | COG1070, XylB, Sugar (pentulose and hexulose) kina | 8e-07 | |
| cd07770 | 440 | cd07770, FGGY_GntK, Gluconate kinases; a subfamily | 4e-06 | |
| PRK09437 | 154 | PRK09437, bcp, thioredoxin-dependent thiol peroxid | 6e-06 | |
| PRK00522 | 167 | PRK00522, tpx, lipid hydroperoxide peroxidase; Pro | 1e-05 | |
| cd07808 | 482 | cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl | 2e-05 | |
| cd00366 | 435 | cd00366, FGGY, FGGY family of carbohydrate kinases | 3e-05 | |
| cd07771 | 440 | cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfam | 6e-05 | |
| cd07774 | 430 | cd07774, FGGY_1, uncharacterized subgroup; belongs | 7e-05 | |
| cd07810 | 490 | cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup | 7e-05 | |
| cd07804 | 492 | cd07804, FGGY_XK_like_1, uncharacterized xylulose | 1e-04 | |
| cd07808 | 482 | cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl | 4e-04 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 4e-04 | |
| pfam00370 | 245 | pfam00370, FGGY_N, FGGY family of carbohydrate kin | 5e-04 | |
| cd07770 | 440 | cd07770, FGGY_GntK, Gluconate kinases; a subfamily | 7e-04 | |
| cd07769 | 484 | cd07769, FGGY_GK, Glycerol kinases; a subfamily of | 7e-04 | |
| cd07798 | 437 | cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-lik | 8e-04 | |
| pfam00370 | 245 | pfam00370, FGGY_N, FGGY family of carbohydrate kin | 0.001 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 0.001 | |
| cd02970 | 149 | cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 fam | 0.001 | |
| cd07775 | 452 | cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf | 0.002 | |
| cd07804 | 492 | cd07804, FGGY_XK_like_1, uncharacterized xylulose | 0.003 | |
| PTZ00294 | 504 | PTZ00294, PTZ00294, glycerol kinase-like protein; | 0.004 |
| >gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Score = 330 bits (849), Expect = e-112
Identities = 116/171 (67%), Positives = 136/171 (79%), Gaps = 1/171 (0%)
Query: 359 KPAPEFEGQAVVN-GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
K AP+F+ AVV G+FK I LS YKG++VVLFFYPLDFTFVCPTEIIAFSDR EEFKK+
Sbjct: 3 KKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL 62
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
N +V+ STDSHFSHLAW N PR +GGLG + P+L+D I+R YGVL+EE G+ RG
Sbjct: 63 NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRG 122
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
FIID + +R IT+NDLPVGRSVDETLR++ A QFV EHGEVCPA WKPG
Sbjct: 123 TFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEHGEVCPANWKPG 173
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173 |
| >gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 312 bits (802), Expect = e-105
Identities = 122/192 (63%), Positives = 148/192 (77%), Gaps = 1/192 (0%)
Query: 357 LEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
+ PAP FE A++ NG FK I LS YKG++VVLFFYPLDFTFVCPTEII FSD + F
Sbjct: 8 INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFN 67
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
++N +V+ACS DS ++HL W R KGGLG MAIP+L+DK+ SIARSYGVL EE G+ Y
Sbjct: 68 ELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAY 127
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RGLFIID K LRQIT+ND+PVGR+V+E LRL++AFQFV +HGEVCPA WK G TMK D
Sbjct: 128 RGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGEVCPANWKKGDPTMKPD 187
Query: 536 PSGSQEYFKTVN 547
P+ S+E F +
Sbjct: 188 PNKSKEGFFSKA 199
|
Length = 199 |
| >gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 2e-92
Identities = 104/188 (55%), Positives = 129/188 (68%), Gaps = 2/188 (1%)
Query: 359 KPAPEFEGQAVVNGQ-FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
K AP+F AV+ G+ F+ I LS Y G++VVLFFYP DFTFVCPTEIIAF+ R EEF+K
Sbjct: 7 KKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR 66
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+VI STDS FSH AW R GG+G + P+++D IAR+YGVL+ E G+ RG
Sbjct: 67 GVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRG 126
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPS 537
FIID +R I +N L +GR+VDE LR++ A QFVA+HGEVCPA WKPG KT+K P
Sbjct: 127 TFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKHGEVCPANWKPGDKTIKPSPD 186
Query: 538 GSQEYFKT 545
EY K
Sbjct: 187 L-GEYLKE 193
|
Length = 194 |
| >gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 6e-92
Identities = 130/290 (44%), Positives = 183/290 (63%), Gaps = 33/290 (11%)
Query: 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTI 148
QDF+VAMLC L PVMS NAASWGYF+ + + WN +IL+ FP+HLLP++ P GTI
Sbjct: 163 QDFVVAMLCGLSRPVMSPHNAASWGYFDLETNAWNSEILQ--AAGFPVHLLPEVVPPGTI 220
Query: 149 VGTLTRDWLGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFID-------- 200
GTL DW GI K TP+ VALGDLQCSVLA LQ +DA++NI TSAQ++F+
Sbjct: 221 AGTLGGDWYGIPKGTPVGVALGDLQCSVLACLQEETDAVLNIGTSAQLSFLPVFKPETVP 280
Query: 201 ----EM-----------GASMNGGNCLATFVCTLQNWFKEFGFNVPQNQIWAKLINASDP 245
E AS+NGGN LA FV LQ+W +E GF+VPQ++++ +LI +
Sbjct: 281 PASPEYRPYFKNHYLAVAASLNGGNVLAAFVKMLQSWVEELGFSVPQDEVYDRLIALALA 340
Query: 246 INHITRHHSTLRVTPTLLGDRHVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMN 305
+ L++ PTL G+RH ASV++IT+ NL + + ALC+GI+ N+H++
Sbjct: 341 ES-----DPPLKIDPTLFGERHDPDLRASVSNITLSNLTLGHITRALCQGIVENLHEMFP 395
Query: 306 RSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDASY 355
R +L +GI RI+G GS L RN +L+ +E+++GL L++ + DA+
Sbjct: 396 RELLKSAGIERIVGSGSALRRNPVLRDEVEKVFGLPLVLSKG---EDAAL 442
|
This subfamily is predominantly composed of uncharacterized bacterial and eukaryotic proteins with similarity to human sedoheptulokinase (SHK, also known as D-altro-heptulose or heptulokinase, EC 2.7.1.14) encoded by the carbohydrate kinase-like (CARKL/SHPK) gene. SHK catalyzes the ATP-dependent phosphorylation of sedoheptulose to produce sedoheptulose 7-phosphate and ADP. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448 |
| >gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 2e-55
Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 12/149 (8%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
AP+F + + LS +KG++VVLFFYP DFT VC TE+ AF D AEEF K
Sbjct: 1 KAPDFT---LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGA 57
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE---TGIPYR 476
+V+ S DS FSH AW G + P+LSD A++YGVL E+ G+ R
Sbjct: 58 EVLGVSVDSPFSHKAWAEK------EGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAAR 111
Query: 477 GLFIIDDKQNLRQITINDLPVGRSVDETL 505
FIID +R + + LP GR+ +E L
Sbjct: 112 ATFIIDPDGKIRYVEVEPLPTGRNAEELL 140
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140 |
| >gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 1e-54
Identities = 82/188 (43%), Positives = 119/188 (63%), Gaps = 3/188 (1%)
Query: 359 KPAPEFEGQAVV-NGQF-KNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
+ AP+F AV+ +G+ Q+ G+ VLFF+P+DFTFVCP+E+IAF R EEF+
Sbjct: 6 RQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQ 65
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
K +V+ S DS F H AW N P +KGG+G + +++D I ++YG+ + + G+
Sbjct: 66 KRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVAL 125
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RG F+ID +R +NDLP+GR++DE LR+V A QF EHG+VCPA W+ G + M A
Sbjct: 126 RGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEHGDVCPAQWEKGKEGMNAS 185
Query: 536 PSGSQEYF 543
P G +Y
Sbjct: 186 PDGVAKYL 193
|
Length = 200 |
| >gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 8e-54
Identities = 75/177 (42%), Positives = 108/177 (61%), Gaps = 6/177 (3%)
Query: 362 PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQV 421
F+ A NG+F + KG++ V FFYP DFTFVCPTE+ +D E KK+ +V
Sbjct: 9 KPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADNYAELKKLGVEV 68
Query: 422 IACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFII 481
+ STD+HF H AW + +G + P+L D + + R++GVL EE G+ RG F+I
Sbjct: 69 YSVSTDTHFVHKAWHD---TSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVI 125
Query: 482 DDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEH-GEVCPAGWKPGSKTMKADPS 537
D + ++ + I+D +GR E LR ++A Q+VA H GEVCPA WK G++T+K PS
Sbjct: 126 DPEGVIQAVEIHDNGIGRDASELLRKIKAAQYVAAHPGEVCPAKWKEGAETLK--PS 180
|
This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187 |
| >gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 7e-52
Identities = 77/191 (40%), Positives = 113/191 (59%), Gaps = 3/191 (1%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
K P F+G A++N S Y K Y +L FYPLDFTFVCP+E++ FS+R +EF++
Sbjct: 72 KLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER 131
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+V+ S DS FSH AW + +GG+ + P+ SD S +++S+G+L +E G +R
Sbjct: 132 GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDE-GFSHRA 190
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPS 537
++D ++ + + DL +GRSVDETLRL A QF + G VCP WK G + MK D
Sbjct: 191 SVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWKQGDQAMKPDSQ 250
Query: 538 GSQEY-FKTVN 547
++Y N
Sbjct: 251 SVKQYLSNRFN 261
|
Length = 261 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 6e-47
Identities = 56/132 (42%), Positives = 75/132 (56%), Gaps = 10/132 (7%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
AP+FE + K + LS YKG++VVLFFYP DFT VC TE+ A +D EEFKK+
Sbjct: 3 DKAPDFELP---DLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLG 59
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
+V+ S DS SH + + P+LSD +A++YGVLNEE G+ R
Sbjct: 60 VEVLGVSVDSPESHKKFAEKL-------GLPFPLLSDPDGEVAKAYGVLNEEEGLALRTT 112
Query: 479 FIIDDKQNLRQI 490
F+ID +R I
Sbjct: 113 FVIDPDGKIRYI 124
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-46
Identities = 68/186 (36%), Positives = 95/186 (51%), Gaps = 11/186 (5%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
AP FE + IK Y G + +LF +P DFT VC TE+ AF+ A EFKK N
Sbjct: 4 TAPNFE----ADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN 59
Query: 419 TQVIACSTDSHFSHLAWC-NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY-- 475
++I S DS SH+ W +I G ++ PI++D +A+ G+++ + G
Sbjct: 60 VKLIGLSVDSVESHIKWIEDIEEYTG--VEIPFPIIADPDREVAKLLGMIDPDAGSTLTV 117
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
R +FIID + +R I GR+ DE LR+V A Q +H PA WKPG +
Sbjct: 118 RAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHKVATPANWKPGDDVIVP- 176
Query: 536 PSGSQE 541
PS S E
Sbjct: 177 PSVSDE 182
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203 |
| >gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-42
Identities = 70/171 (40%), Positives = 96/171 (56%), Gaps = 7/171 (4%)
Query: 360 PAPEFEGQAVVNGQFKNIKLS-QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
PEFE V IKL YKG++ VLF +P DFT VC TE +AF R +EF+++N
Sbjct: 14 KFPEFE----VKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN 69
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-IPYRG 477
T++I S D FSH+ W + K G+ ++ PI++D IA+ G+++ G R
Sbjct: 70 TELIGLSIDQVFSHIKWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRA 128
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
+FIID K +R I VGR++DE LRLV+A Q E G PA W P
Sbjct: 129 VFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEKGVATPANWPPN 179
|
Length = 222 |
| >gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 6e-39
Identities = 70/191 (36%), Positives = 108/191 (56%), Gaps = 5/191 (2%)
Query: 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
L + AP+F VN I LS+YKG++V+LF +P DFT VC TE IAFS R E+FKK
Sbjct: 4 LGQKAPDFT----VNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK 59
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
+ +++ S DS +SH+AW + G+ + P+++D +AR Y +++E +G R
Sbjct: 60 LGVELVGLSVDSIYSHIAWLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVR 118
Query: 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADP 536
G+FIID Q +R + GR++DE +R+ +A Q + PA W+PG + + P
Sbjct: 119 GVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRKVATPANWQPGQEGIVPAP 178
Query: 537 SGSQEYFKTVN 547
S E +
Sbjct: 179 STLDEAEMRIK 189
|
Length = 202 |
| >gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 1e-38
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
Query: 364 FEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIA 423
F+ QA NG+F + +G++ V FFYP DFTFVCPTE+ +D EE +K+ V +
Sbjct: 11 FKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYS 70
Query: 424 CSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDD 483
STD+HF+H AW + + + + ++ D + ++ R++ + E+ G+ R F++D
Sbjct: 71 VSTDTHFTHKAWHS---SSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDP 127
Query: 484 KQNLRQITINDLPVGRSVDETLRLVQAFQFVAEH-GEVCPAGWKPGSKTM 532
+ ++ I + +GR + LR ++A Q+VA H GEVCPA WK G T+
Sbjct: 128 QGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATL 177
|
Length = 187 |
| >gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 4e-34
Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 362 PEFEGQAVVNGQFKNIKL-SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQ 420
PE E V IKL YKG++ VLF +P DFT VC TE +F+ + EEFKK+NT+
Sbjct: 14 PEME----VITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTE 69
Query: 421 VIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIP-YRGLF 479
+I S DS+ SH+ W + ++ PI++D ++A+ G+++ E+ R +F
Sbjct: 70 LIGLSVDSNISHIEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVF 128
Query: 480 IIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGW 525
I+DDK +R I + +GR++DE LR ++A Q V + G V PA W
Sbjct: 129 IVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLVDKAGVVTPANW 174
|
Length = 215 |
| >gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-31
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 17/159 (10%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
AP+FE +G + + LS +G+ VVL+FYP DFT C TE F D EEF+K+
Sbjct: 9 KAPDFELPDQ-DG--ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGA 65
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI------ 473
V+ S DS SH + K GL P+LSD+ +A +YGV E+
Sbjct: 66 VVLGISPDSPKSHKKFA----EKHGL---TFPLLSDEDGEVAEAYGVWGEKKMYGKEYMG 118
Query: 474 PYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512
R F+ID +R + + V DE L ++
Sbjct: 119 IERSTFVIDPDGKIRYV-WRKVKVKGHADEVLAALKKLA 156
|
Length = 157 |
| >gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-29
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
AP+FE + + + ++LS+++G+ VVL F+PL FT VC E+ A D E F+
Sbjct: 6 KAPDFE---LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG 62
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD--KSMSIARSYGVLNEETGIPYR 476
+V+ S DS FS AW + GL P+LSD +A++YGV +E+ G+ R
Sbjct: 63 AEVLGISVDSPFSLRAW----AEENGLT---FPLLSDFWPHGEVAKAYGVFDEDLGVAER 115
Query: 477 GLFIIDDKQNLRQITINDLPVGRS---VDETLR 506
+F+ID +R ++D R DE L
Sbjct: 116 AVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149 |
| >gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-29
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
AP+F + + + LS +G+ VVL+FYP D T C E F D EEFK +
Sbjct: 1 DKAPDFTLP---DQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG 57
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNE---ETGIPY 475
VI S DS SH + K GL P+LSD +A++YGV E +
Sbjct: 58 AVVIGVSPDSVESHAKF----AEKYGLP---FPLLSDPDGKLAKAYGVWGEKKKKYMGIE 110
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLR 506
R F+ID + ++ + +E L
Sbjct: 111 RSTFLIDPDGKIVKV-WRKVKPKGHAEEVLE 140
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140 |
| >gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-27
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Query: 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRN 441
Y G++ VLF +P DFT VC TE + F+ +A +FK++NT++I S D FSH+ W ++
Sbjct: 26 YAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKD 85
Query: 442 KGGLGDMAIPILSDKSMSIARSYGVLNEETGI-PYRGLFIIDDKQNLRQITINDLPVGRS 500
+ + P+++D ++ G+++ G R +FI+DDK +R I VGR+
Sbjct: 86 NTNI-AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRN 144
Query: 501 VDETLRLVQAFQFVAEHGEVCPAGW 525
VDE LR ++A Q ++G P W
Sbjct: 145 VDEILRALKALQTADQYGVALPEKW 169
|
Length = 215 |
| >gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 60/301 (19%), Positives = 110/301 (36%), Gaps = 43/301 (14%)
Query: 72 DHLKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE 131
+ + I L+ D++ L E V+ NA+ F+ + W+ ++L
Sbjct: 143 EIYSKADKI-----LTVADYLAYRLT--GEFVIDYSNASRTMLFDIQTRDWDPELLE--A 193
Query: 132 PSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHS-DAI 187
P LLP++ P G + G ++ + LG+ TP+ D QC+ L DA
Sbjct: 194 AGIPRELLPEVVPPGEVAGAISAEAAALLGLPPGTPVVAGGHDQQCAALGAGAVDEGDAA 253
Query: 188 VNISTSAQIAFIDE----------------MGASMNGGNCLATFVCTLQNWFKEFGFNVP 231
++ TS I + E G + + L WF++
Sbjct: 254 LSAGTSEVITAVSEPEPATDEGLLCYPAAIPGKYVTEASFFTGG--ALLRWFRDEFGLRE 311
Query: 232 QNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHITIQNLGVTK--LF 289
+ + + L + P G + A+ I LG T+ ++
Sbjct: 312 DGSDYEAAAQEAPNSG---PNG--LLILPHFSGSGTPYWDPAARGAIFGLTLGTTRADIY 366
Query: 290 VALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQD 347
AL EGI + D ++ L +G I+RI G +R+ + + I+GL + +
Sbjct: 367 RALLEGIAYELRDNLDA--LEAAGIKIDRIRVTGG-GSRSDLWLQILADIFGLPVETPEV 423
Query: 348 Q 348
+
Sbjct: 424 R 424
|
This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435 |
| >gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-24
Identities = 45/77 (58%), Positives = 57/77 (74%), Gaps = 3/77 (3%)
Query: 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLH 63
VLGIDIGTTSVK CL+D+ T+E L+S+SK T AN+PS P EQ+V KI+STL
Sbjct: 1 MYVLGIDIGTTSVKACLLDSETKEVLASQSKPTSANVPSD---GPLGSEQDVDKILSTLD 57
Query: 64 NCILRLPKDHLKQVKHI 80
+C+ RLPK+ LK+VK I
Sbjct: 58 SCLKRLPKELLKKVKAI 74
|
This subfamily is predominantly composed of uncharacterized bacterial and eukaryotic proteins with similarity to human sedoheptulokinase (SHK, also known as D-altro-heptulose or heptulokinase, EC 2.7.1.14) encoded by the carbohydrate kinase-like (CARKL/SHPK) gene. SHK catalyzes the ATP-dependent phosphorylation of sedoheptulose to produce sedoheptulose 7-phosphate and ADP. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
AP+F V K + LS +KG+ VVL F+P F C E ++ +K
Sbjct: 3 DKAPDFTLPDV-ALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKG 61
Query: 419 TQVIACSTDSH-FSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
V+A + + F + + K GL P+L+D+ + ++YG+ + G+
Sbjct: 62 VDVVAVNASNDPFFVMNFW----AKEGL---KYPVLADRDGAFTKAYGLTE-DAGLRTPR 113
Query: 478 LFIIDDKQNLRQITINDLPVGRS 500
F+ID+ + + + P S
Sbjct: 114 YFLIDEDGKVVYLEVGPDPGDVS 136
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
| >gnl|CDD|239312 cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-11
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 14/136 (10%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYP-LDFTFVCPTEIIAFSDRAEEFKKINT 419
AP+F +V + L+ + G+ V+ +P +D T VC T+ F+ A + NT
Sbjct: 6 APDFT---LVTSDLSEVSLADFAGKVKVISVFPSID-TPVCATQTKRFNKEAAKLD--NT 59
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEETGIPYRGL 478
V+ S D F+ WC G+ ++ LSD + S ++YGVL ++ G+ R +
Sbjct: 60 VVLTISADLPFAQKRWCG----AEGVDNVTT--LSDFRDHSFGKAYGVLIKDLGLLARAV 113
Query: 479 FIIDDKQNLRQITIND 494
F+ID+ + + +
Sbjct: 114 FVIDENGKVIYVELVP 129
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs. Length = 143 |
| >gnl|CDD|220741 pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys peroxiredoxin | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-11
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 510 AFQFVAEHGEVCPAGWKPGSKTMKADPS----GSQEYFKT 545
A QF +HG V PA WKPG K + P + Y +
Sbjct: 1 ALQFTDKHGVVTPANWKPGDKVIVPPPPTEEEAVKRYLEG 40
|
This is the C-terminal domain of 1-Cys peroxiredoxin (1-cysPrx), a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine, upstream of this domain; and glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulfide to the sulfhydryl and consequent activation of the enzyme. The domain is associated with family AhpC-TSA, pfam00578, which carries the catalytic cysteine. Length = 40 |
| >gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 62/307 (20%), Positives = 105/307 (34%), Gaps = 59/307 (19%)
Query: 72 DHLKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRN-H 130
D + I L +D++ L E +A+ G + + W+ ++L
Sbjct: 150 DLFAKAAKI-----LLIKDYLRYRL--TGEFATEISDASGTGLLDIRTRKWDWELLAALG 202
Query: 131 EPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHSDAI 187
P LLP + G ++GTLT + LG+ TP+ V GD + L +
Sbjct: 203 LP--ERDLLPPVVEPGEVLGTLTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGDV 260
Query: 188 VNISTSAQIAF---------------------IDE----MGASMNGGNCLATFVCTLQNW 222
ST + MGA+ GG L W
Sbjct: 261 S-SSTGTSGVVRAATDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLE--------W 311
Query: 223 FKE-FGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHITIQ 281
+E FG ++ + + P I L P L G+R A+ A+
Sbjct: 312 LRELFGLAESYPELLEEALAVPAPAGAI-----GLLFLPYLSGERGPHADPAARGGFVGL 366
Query: 282 NLGVTK--LFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERI 337
L T+ L A+ EG+ + D + + G +R+ +G R+ + +
Sbjct: 367 TLPHTRAHLARAVLEGVAFALADGLEA-LEELGGKPPSRVRVVGG-GARSPLWLQILADA 424
Query: 338 YGLQLIV 344
GL ++V
Sbjct: 425 LGLPVVV 431
|
Length = 502 |
| >gnl|CDD|224988 COG2077, Tpx, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYP-LDFTFVCPTEIIAFSDRAEEFKKIN 418
AP+F +V ++ L+ + G+ V+ +P +D T VC T++ F++ A + N
Sbjct: 23 KAPDFT---LVGKDLNDVSLADFAGKKKVISVFPSID-TPVCATQVRKFNEEAAKLG--N 76
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEE---TGIP 474
T V+ S D F+ +C G G + LSD + + +YGVL E G+
Sbjct: 77 TVVLCISMDLPFAQKRFC------GAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLL 130
Query: 475 YRGLFIIDDKQNLRQITIND 494
R +F++D+ + +
Sbjct: 131 ARAVFVLDENGKVTYSELVP 150
|
Length = 158 |
| >gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
M + VLGIDIGTTSVK L D + E +++ + + P PG EQ+ ++
Sbjct: 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQ-----PGWAEQDPDELWQ 55
Query: 61 TLHNCILRLPKDHLKQVKHI 80
+ + +L ++ I
Sbjct: 56 AILEALRQLLEESKIDPDAI 75
|
Length = 502 |
| >gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 48/255 (18%), Positives = 81/255 (31%), Gaps = 62/255 (24%)
Query: 86 LSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILR--NHEPSFPLHLLPKIQ 143
+S +++++ L E V+ A+ G N W+E+ L LP++
Sbjct: 152 VSIKEYVLYRLFG--ELVVDYSIASGTGLLNIHTLDWDEEALEIAGISEE----QLPELV 205
Query: 144 PSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVL---ATLQYHSDAIVNISTSAQI- 196
P+ + L + LG+ +DTP + D S L A A + I TS I
Sbjct: 206 PTTEQLRGLKAERAPKLGLPEDTPFVLGASDGALSNLGVGAVDP--GVAAITIGTSGAIR 263
Query: 197 AFIDEM---------------------GASMNGGNCLATFVCTLQNWF-KEFGFNVPQNQ 234
+D+ GA NGG L W + +
Sbjct: 264 VVLDQPVTDPPGRLFCYRLDKGRWVLGGAVNNGGIVL--------RWLRDTL-ALPEEEE 314
Query: 235 IWAKLINASDPINHITRHH---STLRVTPTLLGDRHVIAESASVTHITIQNLGVTKLFVA 291
I+ D + + R P L G+R + F+
Sbjct: 315 AEELGIDPYDGLTRGLEFLPAGAGERFPPWLSGERAPLWGL---------TRAARGSFIG 365
Query: 292 LC--EGIINNIHDIM 304
L EG+ + + I+
Sbjct: 366 LAAMEGVAHRLRAIL 380
|
This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440 |
| >gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
AP+F + + + L+ ++GQ V+++FYP T C + D +E KK
Sbjct: 9 IAPKFSLP---DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGV 65
Query: 420 QVIACSTD-----SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--G 472
V+ STD S F+ K L +LSD+ +A +GV E+ G
Sbjct: 66 VVLGISTDKPEKLSRFA---------EKELLN---FTLLSDEDHQVAEQFGVWGEKKFMG 113
Query: 473 IPYRGL----FIIDDKQNLRQI 490
Y G+ F+ID + +
Sbjct: 114 KTYDGIHRISFLIDADGKIEHV 135
|
Length = 154 |
| >gnl|CDD|179055 PRK00522, tpx, lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYP-LDFTFVCPTEIIAFSDRAEEFKKINT 419
AP+F +V ++ L+ + G+ VL +P +D T VC T + F+ A E NT
Sbjct: 24 APDF---TLVANDLSDVSLADFAGKRKVLNIFPSID-TGVCATSVRKFNQEAAELD--NT 77
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLG-DMAIPILSD-KSMSIARSYGVLNEE---TGIP 474
V+ S D F+ +C G G + I LSD + S ++YGV E G+
Sbjct: 78 VVLCISADLPFAQKRFC------GAEGLENVIT-LSDFRDHSFGKAYGVAIAEGPLKGLL 130
Query: 475 YRGLFIID 482
R +F++D
Sbjct: 131 ARAVFVLD 138
|
Length = 167 |
| >gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 52/246 (21%), Positives = 90/246 (36%), Gaps = 53/246 (21%)
Query: 109 AASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPI 165
A+ + W++++L +LP++ S + GTLT + LG+ TP+
Sbjct: 174 ASGTLLLDVAKRDWSDELLDALG--IDRAILPELYESSEVTGTLTAEAAAELGLPAGTPV 231
Query: 166 NVALGDLQCSVLATLQYHS-DAIVNISTSAQI-AFIDE---------------------- 201
GD + DA V++ TS + A D
Sbjct: 232 VAGGGDNAAGAVGNGVVRPGDAFVSLGTSGVVFAVSDSPAPDPEGRVHTFCHAVPGRWYL 291
Query: 202 MGASMNGGNCLATFVCTLQNWFKE-FGFNVPQNQIWAKLINASDPINHITRHHSTLRVTP 260
MG +++ G L WF++ FG + ++ P + L P
Sbjct: 292 MGVTLSAGGSL--------KWFRDTFGPDDSYEEL-LAEAEQVPPGSE------GLLFLP 336
Query: 261 TLLGDR--HVIAE-SASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--IN 315
L G+R H + +T+ + L A+ EG+ ++ D + +L G I+
Sbjct: 337 YLSGERTPHNDPNARGAFIGLTLSH-TRAHLTRAVLEGVAFSLRDSLE--ILRELGVPID 393
Query: 316 RIIGIG 321
RII IG
Sbjct: 394 RIIAIG 399
|
This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482 |
| >gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 7 LGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCI 66
LG+D+GTTSVK L D L+ S++ + + P PG EQ+ +I L +
Sbjct: 3 LGLDVGTTSVKAVLFDEQGN-ILAEASREYEVSYP-----KPGWVEQDPEEIWQALCEVL 56
Query: 67 LRLPKDH 73
Sbjct: 57 REAAAQA 63
|
This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435 |
| >gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 108 NAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW--LGINKDTP- 164
NA++ + + W+ ++L + P L P + GT++G L + KD P
Sbjct: 172 NASTTQLLDPRTRDWDTELLE--KLGIPEELFPPLVEPGTVLGPLKPEVAEELGGKDIPV 229
Query: 165 INVALGDLQCSVLAT 179
I VA D +V A
Sbjct: 230 IAVASHDTASAVAAV 244
|
This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 440 |
| >gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 86 LSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPS-FPLHLLPKIQP 144
L D+I+ L PV A+ F+ + W+E++L E P LP++ P
Sbjct: 150 LHIPDYILFRLT--GRPVTDFTLASRTLLFDIRAREWSEELL---EMFGIPPDALPELVP 204
Query: 145 SGTIVGTLTRD---WLGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFI 199
SGTI+G +++D LG++ TP+ + D A I++ +A+
Sbjct: 205 SGTIIGEVSKDAAESLGLSTGTPVVLGGHDHPVGSYAAGVIDPGDILDSMGTAEALLA 262
|
This subfamily is composed of uncharacterized carbohydrate kinases. They are sequence homologous to bacterial glycerol kinase and have been classified as members of the FGGY family of carbohydrate kinases. The monomers of FGGY proteins contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 430 |
| >gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 7 LGIDIGTTSVKVCLIDANTREELSSESK-DTQANIPSAHDSNPGAHEQNVRKIVSTLHNC 65
LG DIG++S+K L+DA T + L+S S + + I S PG EQ+
Sbjct: 3 LGYDIGSSSIKAALVDAETGKSLASVSYPEQEMEILSPQ---PGWAEQDPEIWWDYTCAA 59
Query: 66 ILRL---PKDHLKQVKHI 80
+L K+ L ++ I
Sbjct: 60 TKQLINQGKEDLSNIQAI 77
|
This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 490 |
| >gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTI 148
+IV L E + + +A+ G ++ + W+E++L P LLPK+ G I
Sbjct: 157 NSYIVYKLTG--ELAVDHSSASGSGLYDIRKGEWSEELLDLLGI--PEDLLPKLVRPGDI 212
Query: 149 VGTLTRDW---LGINKDTPINVALGDLQCSVLAT-LQYHSDAIVNISTSAQIAFI 199
VGT+T + G+ TP+ D + L + DA+ + TS I +
Sbjct: 213 VGTVTEEAAEETGLPAGTPVVAGGADAAAAALGAGVVEPGDAMEMLGTSGVIIVV 267
|
This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492 |
| >gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQN----VRKIVS 60
LGID+GT+ VK L+D + ++S S + + P PG EQ+ +
Sbjct: 1 YYLGIDLGTSGVKALLVDEDGE-VVASASAEYPLSQP-----KPGWSEQDPEDWWEATKA 54
Query: 61 TLHNCILRLPKDHLKQVKHI 80
+ + + +V+ I
Sbjct: 55 AIRELLAKSGIA-GGEVRGI 73
|
This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 66/321 (20%), Positives = 120/321 (37%), Gaps = 63/321 (19%)
Query: 90 DFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIV 149
D++ L E V +A+ G+F+ W++++L P LP++ S
Sbjct: 156 DYLRYRLTG--EYVTEYSDASGTGWFDVAKRAWSKELL--DALDLPESQLPELIESSEKA 211
Query: 150 GTLT---RDWLGINKDTPINVALGDLQCSVLATLQYHS-DAIVNISTSAQI-AFIDE--- 201
GT+ LG++ P+ GD + T DA++++ TS + A D+
Sbjct: 212 GTVRPEVAARLGLSAGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLP 271
Query: 202 -------------------MGASMNGGNCLATFVCTLQNWFKEFGFNVPQNQIWAKLINA 242
MG +++ + L WF+E + +L
Sbjct: 272 DPAGAVHGFCHALPGGWLPMGVTLSATSSL--------EWFRELFGKEDVEAL-NELAEQ 322
Query: 243 SDPINHITRHHSTLRVTPTLLGDR--HVIAESASVTHITIQNLGVTKLFVALCEGIINNI 300
S P + P L G+R H+ ++ N L A+ EG+ +
Sbjct: 323 SPPGAE------GVTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFAL 376
Query: 301 HDIMNRSVLHRSGIN----RIIGIGSCLTRNHILQHYIERIYGLQLIV-EQDQ-----AM 350
D ++ + GI R+IG G+ ++ + + I+G + V E ++ A
Sbjct: 377 RDSLD-ILREAGGIPIQSIRLIGGGA---KSPAWRQMLADIFGTPVDVPEGEEGPALGAA 432
Query: 351 RDASYAL-EKPAPEFEGQAVV 370
A++AL EK +AVV
Sbjct: 433 ILAAWALGEKDLAALCSEAVV 453
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 108 NAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTP 164
+A+ FN K W+E++L P LLP + S I GTL + G+++ P
Sbjct: 174 DASGTMMFNIKTLEWDEELL--AILGIPPDLLPPLVESSEIYGTLNPEHAALFGLDEGIP 231
Query: 165 INVALGDLQCSVL 177
+ GD Q + L
Sbjct: 232 VVGGGGDNQAAAL 244
|
This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245 |
| >gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHN 64
+LG+DIGTTS K L D + R ++ SK P GA EQ+ +I +
Sbjct: 1 YILGVDIGTTSTKAVLFDEDGR-IVAGVSK----RYPLETPP-DGAAEQDPDEIFDAVLE 54
Query: 65 CILRLPK 71
+ +
Sbjct: 55 ILDEVVA 61
|
This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440 |
| >gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 108 NAASWGYFNCKLST--WNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPI 165
NA+ N L T W+E++L P LP+I+ S + G L + PI
Sbjct: 181 NASRTMLMN--LHTLQWDEELLELF--GIPSECLPEIRSSSEVYGYTNEGGLL-GEGIPI 235
Query: 166 NVALGDLQ 173
LGD Q
Sbjct: 236 AGCLGDQQ 243
|
This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484 |
| >gnl|CDD|198369 cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-like proteins; belongs to the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 109 AASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTR---DWLGINKDTPI 165
A F+ + W+E++ + +LP++ +GT +G + + D LG+++D +
Sbjct: 171 ACETLLFDVESKEWSERLCGIF--GISMDILPELVRAGTSLGKIKKEMADELGLSEDAEV 228
Query: 166 NVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDE 201
GD Q ++ + D ++ T+ I I +
Sbjct: 229 IAGGGDTQLALKSVGAGVGDIVIVSGTTTPITKITD 264
|
This subgroup consists of uncharacterized hypothetical bacterial proteins with similarity to bacterial autoinducer-2 (AI-2) kinases, which catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, leading to the inactivation of lsrR, the repressor of the lsr operon. Members of this subgroup belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 437 |
| >gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHN 64
VLGID GTTS K + + + ++S S P PG EQ+ +I L
Sbjct: 1 YVLGIDCGTTSTKAIVFNKQGK-VVASASAPYALISPK-----PGWAEQDPEEIWQALAQ 54
Query: 65 CILRLPKDH---LKQVKHIESTN 84
I ++ + KQ+K I +
Sbjct: 55 AIRKILQQSGISPKQIKGIGISG 77
|
This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 26/125 (20%)
Query: 373 QFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427
K + LS KG+ V++ F+ P C E+ A+E+K +V+ + D
Sbjct: 8 DGKPVSLSDLKGKVVLVNFWASWCPP------CRAEMPELEALAKEYKDDGVEVVGVNVD 61
Query: 428 SHFSHLAWCNIPRNKGGLGDMAI--PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQ 485
+ K L I P+L D +A++YGV G+P F+ID
Sbjct: 62 DD-------DPAAVKAFLKKYGITFPVLLDPDGELAKAYGV----RGLPT--TFLIDRDG 108
Query: 486 NLRQI 490
+R
Sbjct: 109 RIRAR 113
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|239268 cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 25/160 (15%), Positives = 45/160 (28%), Gaps = 48/160 (30%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP---TEIIAFSDRAEEFKK 416
AP+FE + VV+ FY F CP + A S E
Sbjct: 1 TAPDFELPDAGGETV--TLSALLGEGPVVVVFYR---GFGCPFCREYLRALSKLLPELDA 55
Query: 417 INTQVIACSTDS-----HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET 471
+ +++A +S F + P+ +D + R+ G++
Sbjct: 56 LGVELVAVGPESPEKLEAFDKGKFLP------------FPVYADPDRKLYRALGLVRSLP 103
Query: 472 -----------------------GIPYRGLFIIDDKQNLR 488
G+ G+F+I +
Sbjct: 104 WSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTIL 143
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. Length = 149 |
| >gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 87 SFQDFIVAMLCDL--QEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQP 144
D+I+ L + EP NA + G F+ K W+ ++L + P +
Sbjct: 157 MISDWILYKLSGVLAVEP----SNAGTTGLFDLKTRDWSPEMLD--IVGLRDDIFPPVVE 210
Query: 145 SGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLAT 179
+GT++GT+T + G+ TP+ GD+Q L
Sbjct: 211 TGTVIGTVTNEAASETGLAAGTPVVAGGGDVQLGALGL 248
|
This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452 |
| >gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNV----RKIVST 61
+LGIDIGT+S K L D + E L+ S++ + + P PG EQ+ +
Sbjct: 2 LLGIDIGTSSTKAVLFDLD-GEVLAQASREYELSTPQ-----PGWAEQDPEVWWDAVCEI 55
Query: 62 LHNCI 66
+ +
Sbjct: 56 IRELV 60
|
This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492 |
| >gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 108 NAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINV 167
NA+ N K W+E++L ++ P LP+I+ S GT++ + + + + PI
Sbjct: 186 NASRTFLMNIKTLKWDEELL--NKFGIPKETLPEIKSSSENFGTISGEAVPLLEGVPITG 243
Query: 168 ALGDLQCSVL 177
+GD Q +++
Sbjct: 244 CIGDQQAALI 253
|
Length = 504 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| PRK15027 | 484 | xylulokinase; Provisional | 100.0 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 100.0 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 100.0 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 100.0 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 100.0 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 100.0 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 100.0 | |
| PLN02295 | 512 | glycerol kinase | 100.0 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 100.0 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 100.0 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 100.0 | |
| PRK04123 | 548 | ribulokinase; Provisional | 100.0 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 100.0 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 100.0 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 100.0 | |
| PLN02669 | 556 | xylulokinase | 100.0 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 100.0 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 100.0 | |
| KOG2517|consensus | 516 | 100.0 | ||
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 100.0 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 100.0 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 100.0 | |
| PRK15000 | 200 | peroxidase; Provisional | 100.0 | |
| KOG0852|consensus | 196 | 100.0 | ||
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 100.0 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 100.0 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 100.0 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 100.0 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 100.0 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 100.0 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 100.0 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.98 | |
| KOG2531|consensus | 545 | 99.98 | ||
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.97 | |
| PF00370 | 245 | FGGY_N: FGGY family of carbohydrate kinases, N-ter | 99.97 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.96 | |
| KOG0854|consensus | 224 | 99.94 | ||
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.91 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.9 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.89 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.89 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.89 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.89 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.87 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.87 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.86 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.86 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 99.85 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.84 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.83 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.83 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.83 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.83 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.83 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.82 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.81 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.81 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.8 | |
| KOG0855|consensus | 211 | 99.79 | ||
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.79 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.78 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.78 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.75 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.75 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.75 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.73 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.72 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.71 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.69 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.67 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.66 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.65 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.63 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.61 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.51 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 99.43 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 99.42 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.38 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.34 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.31 | |
| KOG2792|consensus | 280 | 99.24 | ||
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.21 | |
| KOG1651|consensus | 171 | 99.21 | ||
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 99.19 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.09 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.07 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.0 | |
| KOG2501|consensus | 157 | 98.98 | ||
| KOG0541|consensus | 171 | 98.98 | ||
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 98.96 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 98.96 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 98.91 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 98.86 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 98.82 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 98.8 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.73 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 98.71 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.71 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 98.7 | |
| KOG0910|consensus | 150 | 98.68 | ||
| PHA02278 | 103 | thioredoxin-like protein | 98.67 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 98.63 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 98.58 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 98.57 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 98.56 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 98.56 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 98.55 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 98.54 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 98.54 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 98.53 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 98.51 | |
| KOG0907|consensus | 106 | 98.51 | ||
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 98.49 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 98.49 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 98.46 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 98.45 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 98.44 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 98.42 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 98.42 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 98.42 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 98.42 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 98.41 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 98.37 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 98.36 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 98.35 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 98.32 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 98.32 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.32 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 98.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.29 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.28 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 98.28 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.25 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 98.25 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 98.25 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 98.22 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.21 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 98.21 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.18 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 98.12 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.11 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 98.1 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.09 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.03 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.0 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 97.99 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 97.96 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 97.95 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 97.95 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 97.95 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 97.91 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 97.85 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 97.8 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.76 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 97.7 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 97.67 | |
| PF10417 | 40 | 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredox | 97.66 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 97.66 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 97.64 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 97.64 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 97.63 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 97.6 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 97.6 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 97.56 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 97.55 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 97.48 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 97.45 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 97.43 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 97.33 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 97.33 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.27 | |
| PHA02125 | 75 | thioredoxin-like protein | 97.24 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.16 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 97.09 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 97.07 | |
| KOG0908|consensus | 288 | 97.04 | ||
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 96.86 | |
| smart00594 | 122 | UAS UAS domain. | 96.86 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 96.77 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 96.67 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 96.65 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 96.64 | |
| KOG4498|consensus | 197 | 96.46 | ||
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 96.44 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 96.22 | |
| KOG0190|consensus | 493 | 96.21 | ||
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 95.6 | |
| smart00732 | 99 | YqgFc Likely ribonuclease with RNase H fold. YqgF | 95.41 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 95.29 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 94.92 | |
| COG2971 | 301 | Predicted N-acetylglucosamine kinase [Carbohydrate | 94.82 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 94.61 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 94.46 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 94.44 | |
| KOG0191|consensus | 383 | 94.35 | ||
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 93.79 | |
| KOG1731|consensus | 606 | 93.75 | ||
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 93.71 | |
| COG1940 | 314 | NagC Transcriptional regulator/sugar kinase [Trans | 93.7 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 93.33 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 93.32 | |
| KOG0912|consensus | 375 | 93.19 | ||
| PRK13311 | 256 | N-acetyl-D-glucosamine kinase; Provisional | 93.09 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 93.0 | |
| COG3054 | 184 | Predicted transcriptional regulator [General funct | 92.98 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 92.94 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 92.65 | |
| KOG0190|consensus | 493 | 92.01 | ||
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 91.82 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 91.69 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 91.48 | |
| PF13941 | 457 | MutL: MutL protein | 90.76 | |
| PF03702 | 364 | UPF0075: Uncharacterised protein family (UPF0075); | 90.69 | |
| PRK09698 | 302 | D-allose kinase; Provisional | 90.4 | |
| PRK13310 | 303 | N-acetyl-D-glucosamine kinase; Provisional | 90.29 | |
| PRK09557 | 301 | fructokinase; Reviewed | 90.13 | |
| PRK00292 | 316 | glk glucokinase; Provisional | 90.07 | |
| COG0533 | 342 | QRI7 Metal-dependent proteases with possible chape | 89.68 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 89.65 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 89.61 | |
| PRK09585 | 365 | anmK anhydro-N-acetylmuramic acid kinase; Reviewed | 89.12 | |
| PRK12408 | 336 | glucokinase; Provisional | 88.99 | |
| PRK13318 | 258 | pantothenate kinase; Reviewed | 88.95 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 88.94 | |
| PF00480 | 179 | ROK: ROK family; InterPro: IPR000600 A family of b | 88.57 | |
| PRK13321 | 256 | pantothenate kinase; Reviewed | 88.44 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 88.29 | |
| KOG0191|consensus | 383 | 87.77 | ||
| PRK05082 | 291 | N-acetylmannosamine kinase; Provisional | 87.73 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 87.44 | |
| PF00349 | 206 | Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo | 86.4 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 86.17 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 86.09 | |
| COG2377 | 371 | Predicted molecular chaperone distantly related to | 85.41 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 85.37 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 85.3 | |
| COG3734 | 306 | DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate | 85.07 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 84.83 | |
| PTZ00340 | 345 | O-sialoglycoprotein endopeptidase-like protein; Pr | 84.71 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 84.7 | |
| PF05378 | 176 | Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r | 84.39 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 84.11 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 83.9 | |
| TIGR00329 | 305 | gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami | 83.17 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 82.95 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 82.83 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 81.53 | |
| PRK14101 | 638 | bifunctional glucokinase/RpiR family transcription | 81.31 | |
| TIGR03723 | 314 | bact_gcp putative glycoprotease GCP. This model re | 81.21 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 81.08 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 80.59 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 80.4 | |
| PF07976 | 169 | Phe_hydrox_dim: Phenol hydroxylase, C-terminal dim | 80.4 |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-55 Score=467.34 Aligned_cols=321 Identities=20% Similarity=0.269 Sum_probs=267.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHH---------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLH--------------------- 63 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~--------------------- 63 (547)
++||||+||||+|++|+|.+|++ +++++.+|+... +.+|+.||||++||+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~v-va~~~~~~~~~~-----~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~~~I~aI~is 74 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEV-VASQTEKLTVSR-----PHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIA 74 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCE-EEEEeecccccC-----CCCCccccCHHHHHHHHHHHHHHHHHhCCccceeEEEEe
Confidence 48999999999999999999998 999988886543 467999999999998543
Q ss_pred -----------------HHHhhCCchhhhhhceeccC------------------------------------CCcchhh
Q psy224 64 -----------------NCILRLPKDHLKQVKHIEST------------------------------------NDLSFQD 90 (547)
Q Consensus 64 -----------------~~i~~~d~r~~~~~~~i~~~------------------------------------~~l~~~d 90 (547)
++|.|.|.|+.++++.+... .+++++|
T Consensus 75 ~q~~~~v~~D~~g~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~~~~~d 154 (484)
T PRK15027 75 GQMHGATLLDAQQRVLRPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKD 154 (484)
T ss_pred cCCCceEEECCCcCCccccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhhcChHH
Confidence 44678999988776554310 1578999
Q ss_pred HHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeEEe
Q psy224 91 FIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINV 167 (547)
Q Consensus 91 ~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~ 167 (547)
||.|+||| +.++|+|+||+|++||+++++|++++++.+ +|++++||+++++++++|+|++++ +||+ ++||++
T Consensus 155 yl~~~LTG--~~~~d~s~as~t~l~d~~~~~w~~~ll~~~--gi~~~~lP~v~~~~~~~G~l~~~~a~~~GL~-~~pV~~ 229 (484)
T PRK15027 155 YLRLRMTG--EFASDMSDAAGTMWLDVAKRDWSDVMLQAC--HLSRDQMPALYEGSEITGALLPEVAKAWGMA-TVPVVA 229 (484)
T ss_pred HHHhhhcC--CccccHHHhhcccccccccCCCcHHHHHHh--CCCHHHCCCCCCCccccccccHHHHHHhCCC-CCeEEe
Confidence 99999999 999999999999999999999999999999 599999999999999999999987 9997 699999
Q ss_pred cCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------ccc------ccccchhH---HHHHhHHHHHHHHhCCCCc
Q psy224 168 ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGA------SMNGGNCL---ATFVCTLQNWFKEFGFNVP 231 (547)
Q Consensus 168 g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~------~~~gg~~~---~~~~g~~~~w~~~~~~~~~ 231 (547)
|++|++|+++|+|+. +|++++|+|||.++..+++ .+. ..++.+.+ ..++|.+++|+++.+.. .
T Consensus 230 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-~ 308 (484)
T PRK15027 230 GGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-S 308 (484)
T ss_pred cccHHHHHHhccCcccCCcEEEEecCceEEEEecCCcccCchhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-c
Confidence 999999999999997 7999999999988765432 110 11222211 24577889999997532 2
Q ss_pred hhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q psy224 232 QNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSV 308 (547)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~ 308 (547)
. ++++.+. .+++++++++++|+|||.|+|+|++++ |+|+|++.+| +++||+||++||++|.+|++++ .
T Consensus 309 ~---~~~~~~~---a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~-~~~~l~rAvlEgia~~~~~~~~--~ 379 (484)
T PRK15027 309 N---VPALIAA---AQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQH-GPNELARAVLEGVGYALADGMD--V 379 (484)
T ss_pred c---HHHHHHH---HhhCCCCCCceEEecccccCCCcCCCCCcceEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH--H
Confidence 1 2222221 234567889999999999999999885 8999999997 9999999999999999999999 4
Q ss_pred hhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecc
Q psy224 309 LHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQD 347 (547)
Q Consensus 309 l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~ 347 (547)
+++.| +++|+++||| +||++|+|++||++|+||.+...
T Consensus 380 l~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv~g~pv~~~~~ 419 (484)
T PRK15027 380 VHACGIKPQSVTLIGGG-ARSEYWRQMLADISGQQLDYRTG 419 (484)
T ss_pred HHHcCCCccEEEEeCcc-cCCHHHHHHHHHHhCCeEEeecC
Confidence 76655 6899999998 99999999999999999976543
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-55 Score=467.90 Aligned_cols=331 Identities=21% Similarity=0.304 Sum_probs=272.0
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH----------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL---------------------- 62 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~---------------------- 62 (547)
|+||||+|||++|++++|.+|++ ++..+.+++... +.+|+.|||+++||+.+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i-~~~~~~~~~~~~-----~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~I~~Igi 74 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKI-VAKSSIGYPLYT-----PASGMAEENPEEIFEAVLVTIREVSINLEDEDEILFVSF 74 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCE-EEEEEeeccccc-----CCCCCeeeCHHHHHHHHHHHHHHHHHhCCCcCceEEEEE
Confidence 58999999999999999999998 888888876433 46799999999999843
Q ss_pred -----------------HHHHhhCCchhhhhhceeccC--------------------------------------CCcc
Q psy224 63 -----------------HNCILRLPKDHLKQVKHIEST--------------------------------------NDLS 87 (547)
Q Consensus 63 -----------------~~~i~~~d~r~~~~~~~i~~~--------------------------------------~~l~ 87 (547)
.++|.|.|.|+.++++.+... .+++
T Consensus 75 s~~~~~~v~~D~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~l~ 154 (505)
T TIGR01314 75 STQMHSLIAFDENWQPLTRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAAKYLE 154 (505)
T ss_pred ecccceeEEECCCcCCcccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhcEEEC
Confidence 344678899987665544210 1578
Q ss_pred hhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCe
Q psy224 88 FQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTP 164 (547)
Q Consensus 88 ~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~ 164 (547)
++|||.|+||| +.++|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|+|++++ +||++|+|
T Consensus 155 ~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~ell~~~--gi~~~~lP~l~~~g~~iG~l~~~~a~~~GL~~g~p 230 (505)
T TIGR01314 155 IKGYIFQRLFG--TYKIDYSTASATGMFNLFELDWDKEALELT--GIKESQLPKLVPTTEIEENLPHEYAKKMGIQSSTP 230 (505)
T ss_pred HHHHHHHHHcC--CceeEhhhhhhhcceeCCCCCCCHHHHHhc--CCCHHHCCCCcCcccccCCcCHHHHHHhCCCCCCe
Confidence 99999999999 999999999999999999999999999999 599999999999999999999987 99999999
Q ss_pred EEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cccc----cc-cchhH---HHHHhHHHHHHHHhCCC
Q psy224 165 INVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGAS----MN-GGNCL---ATFVCTLQNWFKEFGFN 229 (547)
Q Consensus 165 V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~~----~~-gg~~~---~~~~g~~~~w~~~~~~~ 229 (547)
|++|++|++|+++|+|+. +|++++|+|||+++.++.+ .+.. .. +.+.. ..++|.+++||++.+..
T Consensus 231 V~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~ 310 (505)
T TIGR01314 231 FVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKGRIFCYALTKEHWVIGGPVNNGGDVLRWARDEIFD 310 (505)
T ss_pred EEEeccHHHHHHhcCCCCCCCcEEEEechhheeeeccCcCccCCCCceEEEEecCCcEEEEeeecchHhHHHHHHHHhhh
Confidence 999999999999999997 8999999999999876532 1111 11 11111 24577889999997542
Q ss_pred Cch-------hHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHH
Q psy224 230 VPQ-------NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINN 299 (547)
Q Consensus 230 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~ 299 (547)
... ...++.+.+. ++++++++++++|+|||.|+|.|++++ |+|+|++..| +++||+||++||++|.
T Consensus 311 ~~~~~~~~~~~~~y~~l~~~---a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~-~~~~l~rAvlEgia~~ 386 (505)
T TIGR01314 311 SEIETATRLGIDPYDVLTEI---AARVSPGADGLLFHPYLAGERAPLWNANARGSFFGLTYSH-KKEHMIRAALEGVIYN 386 (505)
T ss_pred hhhhhhhhcCCCHHHHHHHH---HhhCCCCCCceEEecccccCCCCCCCCCccEEEECCCCCC-CHHHHHHHHHHHHHHH
Confidence 100 0123333221 235667888999999999999999885 7999999997 9999999999999999
Q ss_pred HHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 300 IHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 300 ~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+|++++. +++ .+ +++|+++||+ +||+.|+|++||++|+||.+...++..+
T Consensus 387 ~~~~~~~--~~~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv~g~pv~~~~~~e~~a 439 (505)
T TIGR01314 387 LYTVALA--LVEVMGDPLNMIQATGGF-ASSEVWRQMMSDIFEQEIVVPESYESSC 439 (505)
T ss_pred HHHHHHH--HHHhcCCCCcEEEEecCc-ccCHHHHHHHHHHcCCeeEecCCCCcch
Confidence 9999984 544 45 6899999998 9999999999999999999988766443
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=462.91 Aligned_cols=327 Identities=17% Similarity=0.250 Sum_probs=268.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH---------------------
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL--------------------- 62 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~--------------------- 62 (547)
+|+||||+||||+|++|+|.+|++ ++.++.+++... ..+.+|+.||||++||+++
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~-~~~~~~~~~~~~---~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~~~~~I~~I~i 77 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKI-VARASTPNASDI---AAENSDWHQWSLDAILQRFADCCRQINSELTECHIRGITV 77 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcE-EEEEeccccccc---CCCCCCCcccCHHHHHHHHHHHHHHHHHhCCccceEEEEE
Confidence 589999999999999999999998 899888875321 2357899999999999854
Q ss_pred -----------------HHHHhhCCchhhhhhceeccC--------------------------------------CCcc
Q psy224 63 -----------------HNCILRLPKDHLKQVKHIEST--------------------------------------NDLS 87 (547)
Q Consensus 63 -----------------~~~i~~~d~r~~~~~~~i~~~--------------------------------------~~l~ 87 (547)
+++|.|+|+|+.++++.+... .+++
T Consensus 78 s~~~~~~v~~D~~G~pl~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~~~~~~l~ 157 (470)
T PRK10331 78 TTFGVDGALVDKQGNLLYPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLEQAHAWLF 157 (470)
T ss_pred eccccceEEECCCcCCccCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHHHHHHhhhhcC
Confidence 344778999987665443210 1579
Q ss_pred hhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCe
Q psy224 88 FQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTP 164 (547)
Q Consensus 88 ~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~ 164 (547)
++|||.|+||| ++++|+|+||+|++||+++++|++++++.+ ||++++||+++++++++|+|++++ +||++|+|
T Consensus 158 ~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~ell~~~--gi~~~~lP~i~~~g~~~G~v~~~~a~~~GL~~g~p 233 (470)
T PRK10331 158 ISSLINHRLTG--EFTTDITMAGTSQMLDIQQRDFSPEILQAT--GLSRRLFPRLVEAGEQIGTLQPSAAALLGLPVGIP 233 (470)
T ss_pred HHHHHHHhhcC--ccccchhhccceeeeecccCCCCHHHHHHc--CCCHHHCCCcccccccccccCHHHHHHhCCCCCCe
Confidence 99999999999 999999999999999999999999999999 599999999999999999999987 99999999
Q ss_pred EEecCCchhhhhhcccccCCCcEEEeccchhhhhhcc--c--------cccc----ccchh---HHHHHhHHHHHHHHhC
Q psy224 165 INVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDE--M--------GASM----NGGNC---LATFVCTLQNWFKEFG 227 (547)
Q Consensus 165 V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~--~--------~~~~----~gg~~---~~~~~g~~~~w~~~~~ 227 (547)
|++|+||++|+++|+|+.++++++++|||.++.++++ . +... ..+.. .....|.+++|+++.+
T Consensus 234 V~~g~~D~~aa~~g~g~~~g~~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~ 313 (470)
T PRK10331 234 VISAGHDTQFALFGSGAGQNQPVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQSGLYNPGMQWLASGVLEWVRKLF 313 (470)
T ss_pred EEEccccHHHHHhCCCCCCCCEEEecchhhhheeecCCCcccccccccccceeccccCceeeechhhHHHHHHHHHHHHh
Confidence 9999999999999999878999999999998865532 1 1000 01111 1233455899999976
Q ss_pred CCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhh
Q psy224 228 FNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRS 307 (547)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~ 307 (547)
... ...++.+.+. ++++++++++++|+|+|.|+| +|+|+||+..| +++||+||++|||+|++|++++
T Consensus 314 ~~~--~~~y~~l~~~---a~~~~~g~~gl~~~p~~~g~~-----rg~~~Gl~~~~-~~~~l~rAvlEgia~~~~~~~~-- 380 (470)
T PRK10331 314 WTA--ETPYQTMIEE---ARAIPPGADGVKMQCDLLACQ-----NAGWQGVTLNT-TRGHFYRAALEGLTAQLKRNLQ-- 380 (470)
T ss_pred ccc--CchHHHHHHH---HhcCCCCCCceEecccccccC-----ceeEECCCCCc-CHHHHHHHHHHHHHHHHHHHHH--
Confidence 421 1233433322 234567889999999999998 79999999997 9999999999999999999999
Q ss_pred hhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 308 VLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 308 ~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
.+++. + +++|+++||| +||+.|+|++||++|+||.+....+..+
T Consensus 381 ~l~~~~~~~~~~i~~~GGg-a~s~~w~Qi~Advlg~pV~~~~~~e~~a 427 (470)
T PRK10331 381 VLEKIGHFKASELLLVGGG-SRNALWNQIKANMLDIPIKVLDDAETTV 427 (470)
T ss_pred HHHHhcCCCCceEEEEccc-ccCHHHHHHHHHhcCCeeEecCcccchH
Confidence 47664 3 6899999998 9999999999999999999888766443
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=464.81 Aligned_cols=332 Identities=18% Similarity=0.246 Sum_probs=269.2
Q ss_pred CCC-ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH-----------------
Q psy224 1 MSS-QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL----------------- 62 (547)
Q Consensus 1 M~~-~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~----------------- 62 (547)
|+| +|+||||+||||+|++|+|.+|++ +++.+.+|+... +.+|+.||||++||+++
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d~~g~~-~~~~~~~~~~~~-----~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDHDGNI-VSVAQKEFTQIF-----PQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQ 74 (498)
T ss_pred CCccCEEEEEecCCCceEEEEECCCCCE-EEEEeeeccccC-----CCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 544 689999999999999999999998 899888886544 47899999999999843
Q ss_pred ------------------------HHHHhhCCchhhhhhceecc----------C-------------------------
Q psy224 63 ------------------------HNCILRLPKDHLKQVKHIES----------T------------------------- 83 (547)
Q Consensus 63 ------------------------~~~i~~~d~r~~~~~~~i~~----------~------------------------- 83 (547)
+++|.|+|.|+.++++.+.. +
T Consensus 75 I~~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~ 154 (498)
T PRK00047 75 IAAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARE 154 (498)
T ss_pred eeEEEEecCcceEEEEECCCCcCCcccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHH
Confidence 34478999998766544321 0
Q ss_pred -------CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc
Q psy224 84 -------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW 156 (547)
Q Consensus 84 -------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~ 156 (547)
.+++++|||.|+|||....++|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|.|+++
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~As~t~l~d~~~~~W~~ell~~~--gi~~~~lP~i~~~g~~~G~v~~~- 231 (498)
T PRK00047 155 RAEKGELLFGTIDTWLVWKLTGGKVHVTDYTNASRTMLFNIHTLDWDDELLELL--DIPRSMLPEVRPSSEVYGKTNPY- 231 (498)
T ss_pred HHhcCCeEEeChHHhHhhhhcCCCeeEeechHHhhhhccccccCccCHHHHHhc--CCCHHHCCCccCCcccccccccc-
Confidence 03468899999999721289999999999999999999999999999 59999999999999999999998
Q ss_pred cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc--c-----cc------cccccc--hhH---HHHHh
Q psy224 157 LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID--E-----MG------ASMNGG--NCL---ATFVC 217 (547)
Q Consensus 157 ~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~--~-----~~------~~~~gg--~~~---~~~~g 217 (547)
.|+.+||||++|++|++|+++|+|+. +|++++++|||+++.+.. . .+ ...++. +.. ..++|
T Consensus 232 ~~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g 311 (498)
T PRK00047 232 GFFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVAG 311 (498)
T ss_pred ccCCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhHH
Confidence 88889999999999999999999997 799999999999854332 1 11 111221 111 35678
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHH
Q psy224 218 TLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCE 294 (547)
Q Consensus 218 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~E 294 (547)
.+++|+++.+.....+..++++++ . .+++++++|+|||.|+|+|+|++ |.|+|++..| +++||+||++|
T Consensus 312 ~~l~W~~~~~~~~~~~~~~~~~a~------~-~~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~rAvlE 383 (498)
T PRK00047 312 SAIQWLRDGLKIISDASDSEALAR------K-VEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGT-TKEHIIRATLE 383 (498)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHh------c-CCCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCC-CHHHHHHHHHH
Confidence 899999997642222223333321 2 24678999999999999999875 7999999998 99999999999
Q ss_pred HHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 295 GIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 295 gia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
||+|.+|++++ .+++ .| +++|+++||| +||++|+|++||++|+||++...++..+
T Consensus 384 gia~~~r~~~e--~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvlg~pV~~~~~~e~~a 441 (498)
T PRK00047 384 SIAYQTRDVLD--AMQADSGIRLKELRVDGGA-VANNFLMQFQADILGVPVERPVVAETTA 441 (498)
T ss_pred HHHHHHHHHHH--HHHHhcCCCCceEEEecCc-ccCHHHHHHHHHhhCCeeEecCcccchH
Confidence 99999999999 4764 35 7899999998 9999999999999999999987766443
|
|
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=430.32 Aligned_cols=333 Identities=17% Similarity=0.225 Sum_probs=280.8
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHH----------------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS---------------------- 60 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~---------------------- 60 (547)
++|+++||.||||+|+++||.+|++ ++.++.+++..+ |.+||+||||.++|+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~i-va~~q~e~~Q~y-----P~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaa 77 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNI-VAIAQREFTQIY-----PQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAA 77 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCc-hhhhhhhhhhhC-----CCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 5899999999999999999999998 999999996655 599999999999998
Q ss_pred -------------------HHHHHHhhCCchhhhhhceeccC--------------------------------------
Q psy224 61 -------------------TLHNCILRLPKDHLKQVKHIEST-------------------------------------- 83 (547)
Q Consensus 61 -------------------~~~~~i~~~d~r~~~~~~~i~~~-------------------------------------- 83 (547)
+++++|.|+|+|+.+.|+++...
T Consensus 78 IGITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~ae 157 (499)
T COG0554 78 IGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAE 157 (499)
T ss_pred EEeeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhhHhh
Confidence 46677899999998888777532
Q ss_pred ----CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCC
Q psy224 84 ----NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGI 159 (547)
Q Consensus 84 ----~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl 159 (547)
.+.++.+||.|+|||+..+++|+||||+|+|||+++.+||+++|+.| +||++.||+++++.++.|.+... .+
T Consensus 158 ~Gel~fGTiDtWLiw~LTgg~~h~TD~sNASRT~L~ni~~l~WD~elL~il--~Ip~~~LPev~~ss~~~G~t~~~--~~ 233 (499)
T COG0554 158 KGELLFGTIDTWLIWKLTGGKVHVTDYSNASRTMLFNIHSLEWDDELLELL--GIPRSMLPEVRPSSEIYGVTGIG--FL 233 (499)
T ss_pred cCCeEEecchhhheeeccCCceeccccchhHHHhcccccccCCCHHHHHHh--CCChHhCcccccccccccccccc--cc
Confidence 04699999999999988999999999999999999999999999999 69999999999999999987663 23
Q ss_pred CCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc--ccc-----------ccccchhH-----HHHHhHHH
Q psy224 160 NKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE--MGA-----------SMNGGNCL-----ATFVCTLQ 220 (547)
Q Consensus 160 ~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~--~~~-----------~~~gg~~~-----~~~~g~~~ 220 (547)
...+||..-.||++||.+|.||+ +|++..+.||...+.+++. .-. ..+|...| ...+|.++
T Consensus 234 g~~vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~gk~~YALEGsif~aGaav 313 (499)
T COG0554 234 GAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDGKVTYALEGSIFVAGAAV 313 (499)
T ss_pred CCceeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccCCeEEEEEecceeehhhHH
Confidence 46799999999999999999998 8999999999999887742 111 11221112 13478899
Q ss_pred HHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHH
Q psy224 221 NWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGII 297 (547)
Q Consensus 221 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia 297 (547)
+|++|.+.-.+.....+.++. ....++|++|.|.|.|-..|+|++ |.|+||+..+ +++|++||++||||
T Consensus 314 qWLrd~L~~i~~a~~~e~~A~-------~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt-~~~hi~RA~LEsia 385 (499)
T COG0554 314 QWLRDGLGLIDDASDSEELAE-------SVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGT-TKAHIARATLESIA 385 (499)
T ss_pred HHHHHhcCccCchhHHHHHHh-------ccCCCCceEEEcccccCCCCCcCcccceeEEeeCCCC-CHHHHHHHHHHHHH
Confidence 999995433444344444443 234568999999999999999995 8999999998 99999999999999
Q ss_pred HHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhhhc
Q psy224 298 NNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDASYA 356 (547)
Q Consensus 298 ~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~~~ 356 (547)
|..|++++. |++ .+ +++++|.||+ ++|+++||++||+++.||.++...|..+.+++
T Consensus 386 yQ~~dv~~a--M~~d~~~~~~~LrvDGG~-s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA 444 (499)
T COG0554 386 YQTRDVLEA--MEKDSGIKLTRLRVDGGA-SRNNFLMQFQADILGVPVERPVVLETTALGAA 444 (499)
T ss_pred HHHHHHHHH--HHHhcCCCceeEEEcCcc-ccchhHHHHHHHHhCCeeeccccchhhHHHHH
Confidence 999999995 554 55 7899999996 99999999999999999999998887765443
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=453.52 Aligned_cols=333 Identities=23% Similarity=0.326 Sum_probs=274.1
Q ss_pred CCCceEEEEEeCCceeEEEEEecC-CCeeecccccccccCCCCcCCCCCCccccCHHHHHHH------------------
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDAN-TREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVST------------------ 61 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~-g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~------------------ 61 (547)
|+|+|+||||+|||++|++++|.+ |++ ++..+..++... +.+|+.||||++||++
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~-~~~~~~~~~~~~-----~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~ 74 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEV-VATARFENPVST-----PQPGWAEQDPDELWQAILEALRQLLEESKIDPDA 74 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeE-EEEeeccccccC-----CCCCCcccCHHHHHHHHHHHHHHHHHhcccChhh
Confidence 778999999999999999999999 666 888888886543 5899999999999984
Q ss_pred ----------------------HHHHHhhCCchhhhhhceeccC------------------------------------
Q psy224 62 ----------------------LHNCILRLPKDHLKQVKHIEST------------------------------------ 83 (547)
Q Consensus 62 ----------------------~~~~i~~~d~r~~~~~~~i~~~------------------------------------ 83 (547)
+.++|.|.|.|+..+++.+...
T Consensus 75 I~aI~is~~~~g~vllD~~g~~L~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~~~k 154 (502)
T COG1070 75 IAAIGISGQGHGLVLLDANGEPLRPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDLFAK 154 (502)
T ss_pred ceEEEEeccccceEEECCCCCCccccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcHHHHh
Confidence 4455788899987666555321
Q ss_pred --CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCC-CCCCCCcccCCccceeecccc---c
Q psy224 84 --NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFP-LHLLPKIQPSGTIVGTLTRDW---L 157 (547)
Q Consensus 84 --~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~-~~~Lp~i~~~~~~~G~v~~~~---~ 157 (547)
.+++++|||.|+||| ++++|+|+||+|+|||+++++|+.++|+.+ +++ .++|||++++++++|+|++++ +
T Consensus 155 ~~~il~~~dyl~~rLTG--~~~~e~s~as~t~l~d~~~~~w~~~~l~~~--gl~~~~~lp~vv~~g~~~G~l~~e~A~~~ 230 (502)
T COG1070 155 AAKILLIKDYLRYRLTG--EFATEISDASGTGLLDIRTRKWDWELLAAL--GLPERDLLPPVVEPGEVLGTLTPEAAEEL 230 (502)
T ss_pred hhheechHHHHHHHHhC--CcccccccccccccccccccccCHHHHHHc--CCChHHhCCCccCccceeccccHHHHHHh
Confidence 158999999999999 999999999999999999999999999999 588 499999999999999999997 9
Q ss_pred CCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cccccc-----cchhH----HHHHhHHHH
Q psy224 158 GINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGASMN-----GGNCL----ATFVCTLQN 221 (547)
Q Consensus 158 Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~~~~-----gg~~~----~~~~g~~~~ 221 (547)
||+.++||++|+||++++++|+|.. ++++..++||+.++....+ .+...+ .+..+ ..+++.+++
T Consensus 231 Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (502)
T COG1070 231 GLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLE 310 (502)
T ss_pred CCCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeeccccccCCccceeeecccCCCeEEEEEEecccHHHHH
Confidence 9999999999999999999999998 7889999999998764432 111111 11111 244667889
Q ss_pred HHHHhCCCCc-hhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHH
Q psy224 222 WFKEFGFNVP-QNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGII 297 (547)
Q Consensus 222 w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia 297 (547)
|+++.+.... ..+...+.. ....+.++.++.|+||+.|||.|.+++ +.|.|++..+ +++|++||++||++
T Consensus 311 w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~-~~~~l~ravlEgva 384 (502)
T COG1070 311 WLRELFGLAESYPELLEEAL-----AVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPH-TRAHLARAVLEGVA 384 (502)
T ss_pred HHHHHhccccCcHHHHHHHH-----hccCCCCCCCcEEeccccCCcCCCCCccceeEEEcccccc-CHHHHHHHHHHHHH
Confidence 9999865431 112222211 112335778999999999999999986 6999999997 99999999999999
Q ss_pred HHHHHhhhhhhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 298 NNIHDIMNRSVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 298 ~~~~~~~~~~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
|.++..++ .+++. + +++|+++||| +||+.|+|++||++|+||.++...|..+
T Consensus 385 ~~l~~~~~--~l~~~~g~~~~~i~~~GGg-ars~~w~Qi~Ad~~g~~v~~~~~~e~~a 439 (502)
T COG1070 385 FALADGLE--ALEELGGKPPSRVRVVGGG-ARSPLWLQILADALGLPVVVPEVEEAGA 439 (502)
T ss_pred HHHHHHHH--HHHHhcCCCccEEEEECCc-ccCHHHHHHHHHHcCCeeEecCcccchH
Confidence 99999999 57775 4 6789999998 9999999999999999999987665543
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=457.12 Aligned_cols=331 Identities=19% Similarity=0.283 Sum_probs=269.4
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHH-------------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLH------------------- 63 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~------------------- 63 (547)
|+++||||+||||+|++|+|.+|++ ++..+.+++... +.+|+.||||++||++++
T Consensus 1 ~~~~lgiDiGTts~Ka~l~d~~G~~-v~~~~~~~~~~~-----~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I 74 (504)
T PTZ00294 1 MKYIGSIDQGTTSTRFIIFDEKGNV-VSSHQIPHEQIT-----PHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKI 74 (504)
T ss_pred CcEEEEEecCCCceEEEEECCCCCE-EEEEEEeecccC-----CCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCce
Confidence 4499999999999999999999998 899988886533 478999999999998432
Q ss_pred ------------------------HHHhhCCchhhhhhceecc-----------C-------------------------
Q psy224 64 ------------------------NCILRLPKDHLKQVKHIES-----------T------------------------- 83 (547)
Q Consensus 64 ------------------------~~i~~~d~r~~~~~~~i~~-----------~------------------------- 83 (547)
++|.|+|+|+.++++++.. +
T Consensus 75 ~aIgis~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~ 154 (504)
T PTZ00294 75 KAIGITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKD 154 (504)
T ss_pred EEEEeecCcceEEEEECCCCCCcccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHHHHH
Confidence 3356788887665443210 0
Q ss_pred ---C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc
Q psy224 84 ---N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW 156 (547)
Q Consensus 84 ---~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~ 156 (547)
. +++++|||.|+|||..++++|+|+||+|++||+++++|++++++.+ ||++++||+++++++++|+|+++.
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~As~tgl~D~~~~~W~~~ll~~~--gi~~~~LP~v~~~~~~~G~l~~~~ 232 (504)
T PTZ00294 155 AVKEGTLLFGTIDTWLIWNLTGGKSHVTDVTNASRTFLMNIKTLKWDEELLNKF--GIPKETLPEIKSSSENFGTISGEA 232 (504)
T ss_pred hhhcCCeEEEcHHHHHHHHhcCCceEEEEhhhhHHhhccCcccCccCHHHHHHh--CCCHHHCCCccCCccccCccchhh
Confidence 1 3568999999999865689999999999999999999999999999 599999999999999999999888
Q ss_pred cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhh-h-cc-----cccc------c-cc---chhH---HHH
Q psy224 157 LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAF-I-DE-----MGAS------M-NG---GNCL---ATF 215 (547)
Q Consensus 157 ~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~-~-~~-----~~~~------~-~g---g~~~---~~~ 215 (547)
+|+++|+||++|++|++|+++|+|+. +|++.+++|||+++.+ + +. .+.. . ++ .+.+ ..+
T Consensus 233 ~~~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (504)
T PTZ00294 233 VPLLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAV 312 (504)
T ss_pred cCCCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhh
Confidence 99999999999999999999999997 8999999999988532 2 11 1110 0 11 1111 345
Q ss_pred HhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHH
Q psy224 216 VCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVAL 292 (547)
Q Consensus 216 ~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~ 292 (547)
+|.+++|+++.+.....+..+++++ +++ +++++++|+|||.|+|.|++++ |.|+|++..| +++||+||+
T Consensus 313 ~g~~~~W~~~~~~~~~~~~~~~~~a------~~~-~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~-~~~~i~rAv 384 (504)
T PTZ00294 313 AGAGVEWLRDNMGLISHPSEIEKLA------RSV-KDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKT-TRAHIVRAA 384 (504)
T ss_pred hHHHHHHHHHHhCCCCCHHHHHHHH------HhC-CCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCC-CHHHHHHHH
Confidence 7889999999753222223333333 223 3778999999999999999875 8999999998 999999999
Q ss_pred HHHHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 293 CEGIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 293 ~Egia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+|||+|.+|++++ .+++ .| +++|+++||+ +||+.|+|++||++|+||.+...++..+
T Consensus 385 lEgia~~~r~~~~--~l~~~~g~~~~~i~~~GG~-a~s~~w~Qi~Adv~g~pV~~~~~~e~~a 444 (504)
T PTZ00294 385 LEAIALQTNDVIE--SMEKDAGIELNSLRVDGGL-TKNKLLMQFQADILGKDIVVPEMAETTA 444 (504)
T ss_pred HHHHHHHHHHHHH--HHHHhhCCCcceEEEeccc-ccCHHHHHHHHHHhCCceEecCcccchH
Confidence 9999999999999 4765 45 6799999998 9999999999999999999988776544
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=457.31 Aligned_cols=330 Identities=18% Similarity=0.243 Sum_probs=264.3
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHH---------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLH--------------------- 63 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~--------------------- 63 (547)
|+||||+|||++|++|+|.+|++ +++++.+|+... +.+|+.||||++||++++
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~-~~~~~~~~~~~~-----~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i 74 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARP-VASHQVEFTQIY-----PQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGL 74 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCE-EEEEeecccccC-----CCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccce
Confidence 68999999999999999999998 999998886544 579999999999997433
Q ss_pred ------------------------HHHhhCCchhhhhhceecc------------C------------------------
Q psy224 64 ------------------------NCILRLPKDHLKQVKHIES------------T------------------------ 83 (547)
Q Consensus 64 ------------------------~~i~~~d~r~~~~~~~i~~------------~------------------------ 83 (547)
++|.|+|.|+.++++.+.. +
T Consensus 75 ~aIg~s~q~~~~v~~dd~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~ 154 (512)
T PLN02295 75 KAIGITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAVK 154 (512)
T ss_pred EEEEEecCcceEEEEECCCCCCcccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCHHHH
Confidence 3356889998655433210 0
Q ss_pred --------CCcchhhHHHHHHhCCC---CCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceee
Q psy224 84 --------NDLSFQDFIVAMLCDLQ---EPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTL 152 (547)
Q Consensus 84 --------~~l~~~d~l~~~LtG~~---~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v 152 (547)
.+++++|||.|+|||.. ++++|+|+||+|+|||+++++||+++++.+ +|++++|||++++++++|+|
T Consensus 155 ~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~--gi~~~~lP~l~~~~~~~G~v 232 (512)
T PLN02295 155 EAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEAL--GIPAEILPKIVSNSEVIGTI 232 (512)
T ss_pred HhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHc--CCCHHHCCCcccCccceecc
Confidence 14678999999999932 469999999999999999999999999999 59999999999999999999
Q ss_pred cccccCCCCCCeEEecCCchhhhhhcccccCCCcEEEeccchhhhhhc-c------ccc------cc----ccchhH---
Q psy224 153 TRDWLGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFID-E------MGA------SM----NGGNCL--- 212 (547)
Q Consensus 153 ~~~~~Gl~~g~~V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~-~------~~~------~~----~gg~~~--- 212 (547)
++++.. .|+||++|++|++|+++|+|+.+|++.+++|||.++.+.. . .+. .. ++.+.+
T Consensus 233 ~~~~a~--~g~pV~~g~~D~~aa~~G~G~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (512)
T PLN02295 233 AKGWPL--AGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGS 310 (512)
T ss_pred cccccc--CCCcEEEEechHHHHHhhCcCCCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEech
Confidence 987522 4999999999999999999996689999999998854321 1 111 01 222222
Q ss_pred HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHH
Q psy224 213 ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLF 289 (547)
Q Consensus 213 ~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ 289 (547)
..++|.+++|+++.+.....++.+++++. +. +++++++|+|||.|+|.|+|++ |.|+||+..| +++||+
T Consensus 311 ~~~~G~~~~W~~~~~~~~~~~~~~~~~a~------~~-~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~-~~~~l~ 382 (512)
T PLN02295 311 VAIAGAAVQWLRDNLGIIKSASEIEALAA------TV-DDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFT-NKAHIA 382 (512)
T ss_pred hhhhHHHHHHHHHHcCCCCCHHHHHHHHH------hC-CCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCC-CHHHHH
Confidence 35678899999997642222223333321 23 3677899999999999999985 8999999997 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhc--------CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhhh
Q psy224 290 VALCEGIINNIHDIMNRSVLHRS--------GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDASY 355 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~~--------g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~~ 355 (547)
||++||++|.+|++++. +++. .+++|+++||| +||++|+|++||++|+||.+....+..+.++
T Consensus 383 RAvlEgia~~~r~~l~~--l~~~~~~~~~~~~~~~i~~~GGg-a~s~~w~Qi~ADv~g~pV~~~~~~e~~alGa 453 (512)
T PLN02295 383 RAVLESMCFQVKDVLDA--MRKDAGEEKSHKGLFLLRVDGGA-TANNLLMQIQADLLGSPVVRPADIETTALGA 453 (512)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhhcccccCCCcceEEEeccc-hhCHHHHHHHHHhcCCceEecCccccHHHHH
Confidence 99999999999999994 6543 26789999998 9999999999999999999888766544333
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=444.79 Aligned_cols=328 Identities=16% Similarity=0.235 Sum_probs=263.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH----------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL---------------------- 62 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~---------------------- 62 (547)
++||||+||||+|++|+|.+|++ ++..+.+++... ..+.+|+.||||++||+++
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~-va~~~~~~~~~~---~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~~~I~aI~~s 77 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKI-VASASTPNATKQ---AIENNDYHIWDLEAIWQKLADCCQQINSELTEKHIRGIAVT 77 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCE-EEEEecccccCC---CCCCCCceeeCHHHHHHHHHHHHHHHHhhcChhceEEEEEe
Confidence 68999999999999999999998 888888765321 2357899999999999844
Q ss_pred ----------------HHHHhhCCchhhhhhceeccC--------------------------------------CCcch
Q psy224 63 ----------------HNCILRLPKDHLKQVKHIEST--------------------------------------NDLSF 88 (547)
Q Consensus 63 ----------------~~~i~~~d~r~~~~~~~i~~~--------------------------------------~~l~~ 88 (547)
+++|.|.|+|+.++++.+... .++++
T Consensus 78 ~~~~~~v~~D~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~l~~ 157 (465)
T TIGR02628 78 TFGVDGAPFDKQGNQLYPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFERMHKFVFI 157 (465)
T ss_pred ccccceEEECCCCCCccccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChHHHHHHHHhhCc
Confidence 344678899987665444210 15789
Q ss_pred hhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeE
Q psy224 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPI 165 (547)
Q Consensus 89 ~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V 165 (547)
+|||.|+||| +..+|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|+|++++ +||++|+||
T Consensus 158 ~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~w~~ell~~~--gi~~~~lP~l~~~~~~~G~v~~~~a~~~Gl~~g~pV 233 (465)
T TIGR02628 158 SSMITHRLTG--EFTTDITMAGTSMMTDLTQRNWSPQILQAL--GLSRRLFPPLVEAGEQIGTLQNSAAAMLGLPVGVPV 233 (465)
T ss_pred HHHHHHHHhC--CcccchhhhhcceeeecCcCCCCHHHHHHc--CCCHHHCCCcccCCccceeeCHHHHHHhCCCCCCCE
Confidence 9999999999 999999999999999999999999999999 599999999999999999999887 999999999
Q ss_pred EecCCchhhhhhcccccCCCcEEEeccchhhhhhcc------cc----cc-----cccchh--HHHHHhHHHHHHHHhCC
Q psy224 166 NVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDE------MG----AS-----MNGGNC--LATFVCTLQNWFKEFGF 228 (547)
Q Consensus 166 ~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~------~~----~~-----~~gg~~--~~~~~g~~~~w~~~~~~ 228 (547)
++|+||++++++|+|+.++++++++|||.++.+..+ .+ .. ..+.+. ..+..|.+++|+++.++
T Consensus 234 ~~g~~D~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~W~~~~~~ 313 (465)
T TIGR02628 234 ISAGHDTQFALFGSGAEQNQPVLSSGTWEILMARSQQVDTSLLSQYAGSTCELDSQAGLYNPAMQWLASGVLEWVRKLFF 313 (465)
T ss_pred EecCccHHHHHhccCCCCCcEEEeccchhhheeccCcCCCCccccccccccccccCCceeeehhhhhhhhHHHHHHHHhc
Confidence 999999999999999878899999999998765532 01 00 011111 12344558999999753
Q ss_pred CC--chhHHHHHHHhccCcccccccCCCCeE-EecCccCcccCCCCCceEEecccCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy224 229 NV--PQNQIWAKLINASDPINHITRHHSTLR-VTPTLLGDRHVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMN 305 (547)
Q Consensus 229 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~G~r~p~~~~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~ 305 (547)
.. ...+.++++.+. ++++++++++++ |.|++. | ..+|+|+|++.+| +++||+||++||++|.+|++++
T Consensus 314 ~~~~~~~~~~~~l~~~---a~~~~~g~~gl~~~~p~~~----~-~a~g~~~Gl~~~~-~~~~l~rAvlEgia~~~r~~~e 384 (465)
T TIGR02628 314 TAETPSDHYYQMMIEE---ARLIANGADGVVNFQCDLL----S-CGQGGIQGLTLNT-TRGHIYRAALEGLTAQLKRNLQ 384 (465)
T ss_pred chhhccccHHHHHHHH---HHhCCCCCCcceeecccCC----c-ccceeEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 21 101123443322 335667888998 999875 3 2359999999997 9999999999999999999999
Q ss_pred hhhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 306 RSVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 306 ~~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
.+++. + +++|+++||| +||+.|+|++||++++||.+...++..+
T Consensus 385 --~l~~~~~~~~~~i~~~GGg-a~s~~w~Qi~Adv~g~pV~~~~~~e~~~ 431 (465)
T TIGR02628 385 --MLEQIGQFKASELLLVGGG-SKNTLWNQIRANMLDIPVKVVDDAETTV 431 (465)
T ss_pred --HHHHhcCCCcceEEEecCc-cCCHHHHHHhhhhcCCeeEeccCCcchH
Confidence 47764 3 6899999998 9999999999999999999988766443
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-52 Score=446.02 Aligned_cols=330 Identities=17% Similarity=0.251 Sum_probs=268.0
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH---------------------
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL--------------------- 62 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~--------------------- 62 (547)
+|+||||+|||++|++|+|.+|++ ++..+.+++... +.+|+.|||+++||+.+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~-l~~~~~~~~~~~-----~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aI 74 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNI-VAIHQKEFTQIF-----PKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAI 74 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCE-EEEEeeeccccC-----CCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEE
Confidence 489999999999999999999998 899988886544 47899999999999843
Q ss_pred --------------------HHHHhhCCchhhhhhceeccC---------------------------------------
Q psy224 63 --------------------HNCILRLPKDHLKQVKHIEST--------------------------------------- 83 (547)
Q Consensus 63 --------------------~~~i~~~d~r~~~~~~~i~~~--------------------------------------- 83 (547)
+++|.|.|+|+.++++.+...
T Consensus 75 gis~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~~~~ 154 (493)
T TIGR01311 75 GITNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAER 154 (493)
T ss_pred EEecCcceEEEEECCCCcCcccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHHhhc
Confidence 344678899987665443210
Q ss_pred ---CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCC
Q psy224 84 ---NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGIN 160 (547)
Q Consensus 84 ---~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~ 160 (547)
.+++++|||.|+|||.++.++|+|+||+|+|||+++++|++++++.+ ++++++||+++++++++|+++++ |+.
T Consensus 155 ~~~~~~~~~dyl~~~LtG~~~~~~d~s~As~t~l~d~~~~~W~~~~l~~~--gi~~~~lP~l~~~g~~~G~v~~~--~l~ 230 (493)
T TIGR01311 155 GELLFGTIDTWLIWNLTGGKVHVTDVTNASRTMLFNIHTLDWDDELLELF--GIPREILPEVRSSSEVYGYTDPG--LLG 230 (493)
T ss_pred CCeEEECHhHhhhhhccCCceEEeccchhhhhhcccccccccCHHHHHHc--CCCHHHCCCccCCccceeccccc--ccC
Confidence 03468999999999954688999999999999999999999999999 59999999999999999999998 787
Q ss_pred CCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhh-c------cccc------ccccc--hhH----HHHHhHHH
Q psy224 161 KDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFI-D------EMGA------SMNGG--NCL----ATFVCTLQ 220 (547)
Q Consensus 161 ~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~-~------~~~~------~~~gg--~~~----~~~~g~~~ 220 (547)
+|+||++|++|++|+++|+|+. +|++++++|||.++.+. . +.+. ...+. .++ ...+|.++
T Consensus 231 ~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~ 310 (493)
T TIGR01311 231 AEIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPVYALEGSVFVAGAAV 310 (493)
T ss_pred CCceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEEEecCCCCceEEEEeehhhhHHHH
Confidence 9999999999999999999997 79999999999885432 1 1110 11110 011 24578899
Q ss_pred HHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHH
Q psy224 221 NWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGII 297 (547)
Q Consensus 221 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia 297 (547)
+|+++.+.....++..++++. + .+++++++|+|||.|+|+|++++ |+|+|++..| +++||+||++|||+
T Consensus 311 ~W~~~~~~~~~~~~~~~~~a~------~-~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~-~~~~l~rAvlEgia 382 (493)
T TIGR01311 311 QWLRDNLKLIKHAAESEALAR------S-VEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGT-TKAHIARAALEAIA 382 (493)
T ss_pred HHHHHHhCCCCCHHHHHHHHh------c-CCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCC-CHHHHHHHHHHHHH
Confidence 999997643222233333321 2 24778999999999999999875 7999999998 99999999999999
Q ss_pred HHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhh
Q psy224 298 NNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDAS 354 (547)
Q Consensus 298 ~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~ 354 (547)
|.+|.+++ .+++ .| +++|+++||| +||+.|+|++||++|+||.+...++..+.+
T Consensus 383 ~~~~~~~~--~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADv~g~pv~~~~~~e~~alG 439 (493)
T TIGR01311 383 FQTRDVLE--AMEKDAGVEITKLRVDGGM-TNNNLLMQFQADILGVPVVRPKVTETTALG 439 (493)
T ss_pred HHHHHHHH--HHHHhcCCCCceEEEeccc-ccCHHHHHHHHHhcCCeeEecCCCcchHHH
Confidence 99999999 4664 35 6899999998 999999999999999999998776654433
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=448.28 Aligned_cols=334 Identities=17% Similarity=0.230 Sum_probs=264.6
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHH----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCI---------------- 66 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i---------------- 66 (547)
|+|+||||+||||+|++++|.+|++ ++..+.+|+... ..+.+|+.||||++||+++..++
T Consensus 2 m~~~lgID~GTts~Ka~l~d~~G~~-l~~~~~~~~~~~---~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~a 77 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDLNGNQ-IAVGQAEWRHLA---VPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAA 77 (520)
T ss_pred CcEEEEEecCCCceEEEEECCCCCE-EEEEeccccccC---CCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 5699999999999999999999998 888888875332 12468999999999998766552
Q ss_pred -----------------------hhCCchhhhhhceecc------------C---------------------------C
Q psy224 67 -----------------------LRLPKDHLKQVKHIES------------T---------------------------N 84 (547)
Q Consensus 67 -----------------------~~~d~r~~~~~~~i~~------------~---------------------------~ 84 (547)
.|.|.|+.++++++.. + .
T Consensus 78 I~~s~~~~~~v~~D~~g~pl~~~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~kl~Wl~~~~pe~~~~~~~ 157 (520)
T PRK10939 78 VSATSMREGIVLYDRNGTEIWACANVDARASREVSELKELHNNFEEEVYRCSGQTLALGALPRLLWLAHHRPDIYRQAHT 157 (520)
T ss_pred EEEECCcccEEEECCCCCEeeCCcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcCCcchHHHHHHHHHcCcHHHHHhhe
Confidence 2348887766544310 0 1
Q ss_pred CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCC
Q psy224 85 DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINK 161 (547)
Q Consensus 85 ~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~ 161 (547)
+++++|||.|+||| ++++|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|+|++++ +||++
T Consensus 158 ~~~~~dyl~~~LTG--~~~~d~s~As~tgl~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~g~~~G~v~~~~A~~~GL~~ 233 (520)
T PRK10939 158 ITMISDWIAYMLSG--ELAVDPSNAGTTGLLDLVTRDWDPALLEMA--GLRADILPPVKETGTVLGHVTAKAAAETGLRA 233 (520)
T ss_pred EechhHhhhheeeC--ceeeEhhhhhceeeeecCCCCCCHHHHHHc--CCCHHHCCCCccCCceeeeecHHHHHhhCCCC
Confidence 57899999999999 999999999999999999999999999999 599999999999999999999887 99999
Q ss_pred CCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cccc------cccchhH---HHHHhHHHHHHHH
Q psy224 162 DTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGAS------MNGGNCL---ATFVCTLQNWFKE 225 (547)
Q Consensus 162 g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~~------~~gg~~~---~~~~g~~~~w~~~ 225 (547)
|+||++|++|++|+++|+|+. +|++++++|||.++.++.+ .... .++.+.+ ..++|.+++||++
T Consensus 234 g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~ 313 (520)
T PRK10939 234 GTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFRD 313 (520)
T ss_pred CCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccccccCccccceeceeeeCCcceEeeeeccceeeeehHHh
Confidence 999999999999999999997 8999999999998654321 1110 1111111 2346778899999
Q ss_pred hCCCCch-------hHHHHHHHhccCcccccccCCCCeEEecCccCcccC-CCC--CceEEecccCC--CCHHHHHHHHH
Q psy224 226 FGFNVPQ-------NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHV-IAE--SASVTHITIQN--LGVTKLFVALC 293 (547)
Q Consensus 226 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p-~~~--~~~~~gl~~~~--~~~~~l~ra~~ 293 (547)
.+..... ...++.+.+. +++.+++++++ +|||.|+|.| .|+ +|.|+|++.+| ++++||+||++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~---a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~~RAvl 388 (520)
T PRK10939 314 AFCAEEKLLAERLGIDAYSLLEEM---ASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATLFRALE 388 (520)
T ss_pred hhchHHHHHHHhcCCCHHHHHHHH---HhhCCCCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHHHHHHHH
Confidence 7532110 0123333221 23456677776 5999999874 444 38999999874 37999999999
Q ss_pred HHHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 294 EGIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 294 Egia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
|||+|.+|++++ .+++ .| +++|+++||| +||+.|+|++||++|+||.+.+..+..+
T Consensus 389 Egia~~~~~~l~--~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvlg~pV~~~~~~e~~a 447 (520)
T PRK10939 389 ENAAIVSACNLQ--QIAAFSGVFPSSLVFAGGG-SKGKLWSQILADVTGLPVKVPVVKEATA 447 (520)
T ss_pred HHHHHHHHHHHH--HHHHhcCCCCcEEEEeCCc-ccCHHHHHHHHHhcCCeeEEecccCchH
Confidence 999999999999 4665 35 6899999998 9999999999999999999988776544
|
|
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=450.71 Aligned_cols=344 Identities=18% Similarity=0.238 Sum_probs=271.9
Q ss_pred CceEEEEEeCCceeEEEEEec-CCCeeecccccccccCCCC-cCCCCCCccccCHHHHHHH-------------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDA-NTREELSSESKDTQANIPS-AHDSNPGAHEQNVRKIVST------------------- 61 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~~~~~~~~p~-~~~~~~g~~e~d~~~~~~~------------------- 61 (547)
|+|+||||+||||+|++|+|. +|++ +++++.+|+..... ...+.+|+.||||++||++
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I 80 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEE-LATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAV 80 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcE-eEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhE
Confidence 469999999999999999995 9998 89988888642100 1236889999999999973
Q ss_pred ---------------------HH-----------HHHhhCCchhhhhhceecc------------C--------------
Q psy224 62 ---------------------LH-----------NCILRLPKDHLKQVKHIES------------T-------------- 83 (547)
Q Consensus 62 ---------------------~~-----------~~i~~~d~r~~~~~~~i~~------------~-------------- 83 (547)
++ ++|.|+|.|+.++++.+.. .
T Consensus 81 ~aIgis~~~~~~v~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl 160 (548)
T PRK04123 81 VGIGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKI 160 (548)
T ss_pred EEEEEecccceeEEECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHH
Confidence 44 5677899998665533210 0
Q ss_pred ---------------CCcchhhHHHHHHhCCC---CCcccccccccccccccc-CCCccHHHHHhcCCC----CCCCCCC
Q psy224 84 ---------------NDLSFQDFIVAMLCDLQ---EPVMSNQNAASWGYFNCK-LSTWNEQILRNHEPS----FPLHLLP 140 (547)
Q Consensus 84 ---------------~~l~~~d~l~~~LtG~~---~~~~d~s~As~tgl~d~~-~~~W~~~ll~~~g~~----i~~~~Lp 140 (547)
.+++++|||.|+|||.. ...+|.++|+.+++||.+ ++.||+++++.+|+. +++++||
T Consensus 161 ~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~~i~~~llP 240 (548)
T PRK04123 161 LHVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPLLARGLRDKLFT 240 (548)
T ss_pred HHHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCccccccchhhcccccccccccCCCCCHHHHHHhccchhhhhHhhcCC
Confidence 15789999999999932 345789999999999999 666699999998422 7789999
Q ss_pred CcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhcccccCCCcEEEeccchhhhhhccc-----cc-------c
Q psy224 141 KIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDEM-----GA-------S 205 (547)
Q Consensus 141 ~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~~-----~~-------~ 205 (547)
+++++++++|+|++++ +||++|+||++|+||++|+++|+|+.+|++++++|||.++.++.+. +. .
T Consensus 241 ~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~ 320 (548)
T PRK04123 241 ETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVMGTSTCDILLADKQRAVPGICGQVDGSI 320 (548)
T ss_pred ccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCcCCCcEEEEecCceEEEEecCCccccCceeecccCcc
Confidence 9999999999999987 9999999999999999999999999668999999999987655321 10 0
Q ss_pred cccchhH---HHHHhHHHHHHHHhCCCCch--------hHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC--
Q psy224 206 MNGGNCL---ATFVCTLQNWFKEFGFNVPQ--------NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES-- 272 (547)
Q Consensus 206 ~~gg~~~---~~~~g~~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~-- 272 (547)
.++.+.+ .+++|.+++||++.+..... ...++.+.+. +++.++++++++|+|||.|+|.|++++
T Consensus 321 ~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~---a~~~~~g~~gl~f~P~l~Ger~P~~~~~a 397 (548)
T PRK04123 321 VPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEA---AAKQPPGEHGLVALDWFNGRRTPLADQRL 397 (548)
T ss_pred cCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHH---HHhcCCCCCceEEcccccCCCCCCCCCCC
Confidence 1111111 25578899999997632110 0123333221 335677899999999999999999985
Q ss_pred -ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh
Q psy224 273 -ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA 349 (547)
Q Consensus 273 -~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~ 349 (547)
|.|+|++..| +++||+||++||++|.+|++++ .+++.+ +++|+++|||.+||++|+|++||++|+||.+....+
T Consensus 398 rg~~~Gl~~~~-~~~~l~RAvlEgia~~~~~~~e--~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e 474 (548)
T PRK04123 398 KGVITGLTLGT-DAPDIYRALIEATAFGTRAIME--CFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQ 474 (548)
T ss_pred ceEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCccc
Confidence 7999999998 9999999999999999999999 476655 689999999647999999999999999999888776
Q ss_pred hhhh
Q psy224 350 MRDA 353 (547)
Q Consensus 350 ~~~a 353 (547)
..+.
T Consensus 475 ~~al 478 (548)
T PRK04123 475 CPAL 478 (548)
T ss_pred cchH
Confidence 5443
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=450.99 Aligned_cols=334 Identities=19% Similarity=0.240 Sum_probs=265.5
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHH------------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS------------------------ 60 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~------------------------ 60 (547)
++||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i-~~~~~~~~~~~~-----~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Ig 74 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDI-LALAAQNIKTWT-----PSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIG 74 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCE-EEEEEeeeeecc-----CCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEE
Confidence 47999999999999999999998 898888886544 578999999999997
Q ss_pred ---------------HH---------HHHHhhCCchhhhhhceeccC---------------------------------
Q psy224 61 ---------------TL---------HNCILRLPKDHLKQVKHIEST--------------------------------- 83 (547)
Q Consensus 61 ---------------~~---------~~~i~~~d~r~~~~~~~i~~~--------------------------------- 83 (547)
++ +++|.|+|.|+.++++.+...
T Consensus 75 is~~~s~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~ 154 (541)
T TIGR01315 75 FDATCSLVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELF 154 (541)
T ss_pred ecccccceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHH
Confidence 24 567789999988776555320
Q ss_pred ---CCcchhhHHHHHHhCCCCCcccccccccccccc---ccCCCccHHHHHhcCCCCCC---CCC----CCcccCCccce
Q psy224 84 ---NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFN---CKLSTWNEQILRNHEPSFPL---HLL----PKIQPSGTIVG 150 (547)
Q Consensus 84 ---~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d---~~~~~W~~~ll~~~g~~i~~---~~L----p~i~~~~~~~G 150 (547)
.+++++|||.|+||| +.++|+++|+.+++|| +++++||+++++.+| |+. ++| |+++++++++|
T Consensus 155 ~~~~~l~~~dyl~~~LTG--~~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~G--i~~~~~~~l~~~lp~i~~~~~~~G 230 (541)
T TIGR01315 155 ARCKFFDLTDFLTWRATG--KEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIG--LGELVTDNFIRMGGSWMSPGELVG 230 (541)
T ss_pred Hhhhhcchhhhheeeeec--chhHhHhHHhHhhhccccccccCCCCHHHHHHcC--ChhhhhccccccCCcccCCCcccc
Confidence 158999999999999 9999999999999988 699999999999995 763 234 99999999999
Q ss_pred e-ecccc---cCCCCCCeEEecCCchhhhhhcccc---c-CC-------CcEEEeccchhhhhhcc-----ccc------
Q psy224 151 T-LTRDW---LGINKDTPINVALGDLQCSVLATLQ---Y-HS-------DAIVNISTSAQIAFIDE-----MGA------ 204 (547)
Q Consensus 151 ~-v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~---~-~~-------~~~is~GTs~~~~~~~~-----~~~------ 204 (547)
+ |++++ +||++|+||++|++|++|+++|+|. . +| ++.+++|||+++..+.+ .+.
T Consensus 231 ~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~ 310 (541)
T TIGR01315 231 GGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMTKGPVFVPGVWGPYRD 310 (541)
T ss_pred cccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEecCCCccCCceeecccC
Confidence 9 99886 9999999999999999999999964 4 45 78899999988765422 111
Q ss_pred -ccccchhH---HHHHhHHHHHHHHhCCCCch---------hHHHHHHHhccC-ccccccc-----CCCCeEEecCccCc
Q psy224 205 -SMNGGNCL---ATFVCTLQNWFKEFGFNVPQ---------NQIWAKLINASD-PINHITR-----HHSTLRVTPTLLGD 265 (547)
Q Consensus 205 -~~~gg~~~---~~~~g~~~~w~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~P~~~G~ 265 (547)
..++.+.+ ..++|.+++|+++.+....+ ...++.+.+..+ ..++.++ +++|++|+|||.|+
T Consensus 311 ~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~flP~l~G~ 390 (541)
T TIGR01315 311 ALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGN 390 (541)
T ss_pred ccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCceEEccccccC
Confidence 11222111 35678999999997421100 012222211111 1112232 35899999999999
Q ss_pred ccCCCCC---ceEEecccCCCCH---HHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHH
Q psy224 266 RHVIAES---ASVTHITIQNLGV---TKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERI 337 (547)
Q Consensus 266 r~p~~~~---~~~~gl~~~~~~~---~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~ 337 (547)
|+|+|++ |.|+||+..| ++ .||+||++|||+|.+|++++ .+++.| +++|+++||+ +||+.|+|++||+
T Consensus 391 r~P~~dp~arG~~~Gl~~~~-~~~~~~~~~rAvlEgiaf~~r~~~e--~l~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADv 466 (541)
T TIGR01315 391 RSPIADPNMRGVIIGLSMDR-SKDGLALLYYATMEFIAYGTRQIVE--AMNTAGHTIKSIFMSGGQ-CQNPLLMQLIADA 466 (541)
T ss_pred cCCCCCCCCceEEECCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCccEEEEecCc-ccCHHHHHHHHHH
Confidence 9999986 8999999997 88 89999999999999999999 577655 7899999998 9999999999999
Q ss_pred hCCceEEecchhhhh
Q psy224 338 YGLQLIVEQDQAMRD 352 (547)
Q Consensus 338 l~~~v~~~~~~~~~~ 352 (547)
+++||.+....+..+
T Consensus 467 lg~pV~~~~~~e~~a 481 (541)
T TIGR01315 467 CDMPVLIPYVNEAVL 481 (541)
T ss_pred HCCeeEecChhHHHH
Confidence 999999998777544
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=438.12 Aligned_cols=326 Identities=22% Similarity=0.344 Sum_probs=267.7
Q ss_pred EEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH---------------------
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC--------------------- 65 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~--------------------- 65 (547)
||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.+||+++||+.+..+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i-~~~~~~~~~~~~-----~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs 74 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEV-IASGSAPHTVIS-----PHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGIS 74 (481)
T ss_pred CceeecCcceEEEEECCCCCE-EEEEeecccccC-----CCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEe
Confidence 689999999999999999998 999988886533 47899999999999854433
Q ss_pred -------------------HhhCCchhhhhhceeccC--------------------------------------CCcch
Q psy224 66 -------------------ILRLPKDHLKQVKHIEST--------------------------------------NDLSF 88 (547)
Q Consensus 66 -------------------i~~~d~r~~~~~~~i~~~--------------------------------------~~l~~ 88 (547)
+.|.|.|..++.+.+... .++++
T Consensus 75 ~~~~g~v~~d~~g~~l~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~ 154 (481)
T TIGR01312 75 GQMHGLVLLDANGEVLRPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKVMLP 154 (481)
T ss_pred cCCceeEEECCCcCCCccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhheeeCc
Confidence 457777763332222110 15788
Q ss_pred hhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeE
Q psy224 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPI 165 (547)
Q Consensus 89 ~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V 165 (547)
+|||.|+||| +.++|+|+||+|||||+++++|++++++.+ ++++++||+++++++++|++++++ +||++|+||
T Consensus 155 ~~yi~~~LtG--~~~~d~t~as~tgl~d~~~~~W~~~~l~~~--gi~~~~Lp~iv~~~~~~G~v~~~~a~~~Gl~~g~pV 230 (481)
T TIGR01312 155 KDYLRYRLTG--EYVTEYSDASGTGWFDVAKRAWSKELLDAL--DLPESQLPELIESSEKAGTVRPEVAARLGLSAGVPV 230 (481)
T ss_pred hHHHhhhhcC--CeeeeHHHhhcccccccCCCCCCHHHHHHh--CCCHHHCCCccCCCCeeeeEcHHHHHHhCCCCCCeE
Confidence 9999999999 899999999999999999999999999999 599999999999999999999886 999999999
Q ss_pred EecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------ccc------ccccchhH---HHHHhHHHHHHHHhCCC
Q psy224 166 NVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGA------SMNGGNCL---ATFVCTLQNWFKEFGFN 229 (547)
Q Consensus 166 ~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~------~~~gg~~~---~~~~g~~~~w~~~~~~~ 229 (547)
++|+||++|+++|+|+. ++++++++|||+++...++ .+. ..++.+.. ..++|.+++|+++.+..
T Consensus 231 ~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~~~~~ 310 (481)
T TIGR01312 231 AAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELFGK 310 (481)
T ss_pred EecchHHHHHhhCCCcccCCcEEEEecCceEEEEecCCcccCcccceeeeeeecCCceEEEeEehhhHHHHHHHHHHhCC
Confidence 99999999999999986 8999999999998865532 110 11122211 35678899999997632
Q ss_pred CchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhh
Q psy224 230 VPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNR 306 (547)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~ 306 (547)
.+++.+++++ +++++++++++|+||+.|+|.|++++ |+|+|++..| +++|++||++||++|.+|++++
T Consensus 311 -~~~~~l~~~~------~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~-~~~~l~railEgia~~~~~~~~- 381 (481)
T TIGR01312 311 -EDVEALNELA------EQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLTHNT-TRADLTRAVLEGVTFALRDSLD- 381 (481)
T ss_pred -CcHHHHHHHH------hcCCCCCCCeEEecccccCCCCCCCCCcceEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH-
Confidence 2233333332 34566888999999999999999964 7999999987 9999999999999999999999
Q ss_pred hhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 307 SVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 307 ~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
.+++. + +++|+++||+ +||+.|+|++||++|+||.+.+.++..+.
T Consensus 382 -~l~~~~~~~~~~i~~~GG~-s~s~~~~Q~~Adv~g~pv~~~~~~e~~a~ 429 (481)
T TIGR01312 382 -ILREAGGIPIQSIRLIGGG-AKSPAWRQMLADIFGTPVDVPEGEEGPAL 429 (481)
T ss_pred -HHHHhcCCCcceEEEeccc-cCCHHHHHHHHHHhCCceeecCCCcchHH
Confidence 47663 3 6899999998 99999999999999999999887665443
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=441.99 Aligned_cols=339 Identities=17% Similarity=0.222 Sum_probs=269.5
Q ss_pred eEEEEEeCCceeEEEEEe-cCCCeeeccccccccc-----CCCCc-CCCCCCccccCHHHHHHH----------------
Q psy224 5 VVLGIDIGTTSVKVCLID-ANTREELSSESKDTQA-----NIPSA-HDSNPGAHEQNVRKIVST---------------- 61 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d-~~g~~~l~~~~~~~~~-----~~p~~-~~~~~g~~e~d~~~~~~~---------------- 61 (547)
|+||||+||||+|++||| .+|++ ++.++.+|+. ..|.- ....+|+.||||++||++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~-~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~ 80 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEE-IATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDP 80 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcE-eeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 799999999999999999 89998 8999888863 22210 111389999999999972
Q ss_pred ------------------------HHH-----------HHhhCCchhhhhhceecc------------C-----------
Q psy224 62 ------------------------LHN-----------CILRLPKDHLKQVKHIES------------T----------- 83 (547)
Q Consensus 62 ------------------------~~~-----------~i~~~d~r~~~~~~~i~~------------~----------- 83 (547)
+++ +|.|+|+|+.++++.+.. +
T Consensus 81 ~~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~ 160 (536)
T TIGR01234 81 ADVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWA 160 (536)
T ss_pred HHEEEEEEecCcceeEEECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHH
Confidence 442 777999998877654421 0
Q ss_pred -----------------CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCC----CCCCCCCCc
Q psy224 84 -----------------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPS----FPLHLLPKI 142 (547)
Q Consensus 84 -----------------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~----i~~~~Lp~i 142 (547)
.+++++|||.|+||| +.++|+++|+.++++|..-+.|++++++.+|+. +++++||++
T Consensus 161 kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG--~~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~~~lp~~~~p~i 238 (536)
T TIGR01234 161 KILQITEEDPAIYQAADRWIELADWIVAQLSG--DIRRGRCTAGYKALWHESWGYPSASFFDELNPILNRHLPDKLFTDI 238 (536)
T ss_pred HHHHHHhhChHHHHHHhhhcCHHHHHHHHHhC--CccccchhcccceeccccccCCCHHHHHHhcchhhhhhhhhcCCce
Confidence 157999999999999 999999999999988765555599999999531 478999999
Q ss_pred ccCCccceeecccc---cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-----cc--c-----cc
Q psy224 143 QPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-----MG--A-----SM 206 (547)
Q Consensus 143 ~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-----~~--~-----~~ 206 (547)
+++++++|+|++++ +||++|+||++|+||++|+++|+|+. +|++++++|||.++.++.+ .+ . ..
T Consensus 239 ~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (536)
T TIGR01234 239 WTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIV 318 (536)
T ss_pred ecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEecCccccCCceeeeccCccc
Confidence 99999999999886 99999999999999999999999987 7999999999998765432 11 0 01
Q ss_pred ccchhH---HHHHhHHHHHHHHhCCCCch--------hHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---
Q psy224 207 NGGNCL---ATFVCTLQNWFKEFGFNVPQ--------NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES--- 272 (547)
Q Consensus 207 ~gg~~~---~~~~g~~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~--- 272 (547)
.+.+.+ ..++|.+++||++.+..... .+.++.+.+ .+++.++++++++|+|||.|+|.|++++
T Consensus 319 ~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~---~a~~~p~g~~gllflP~l~Ger~P~~d~~ar 395 (536)
T TIGR01234 319 PGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSE---AAAKQPSGEHGLVALDWFNGNRSPLVDQRLK 395 (536)
T ss_pred CCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHH---HHHhCCCCCCCeEecchhccCCCCCCCCcce
Confidence 111111 35678999999998632110 012333322 1335677899999999999999999985
Q ss_pred ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 273 ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 273 ~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
|.|+|++..| ++.||+||++||++|.+|++++ .+++.| +++|+++|||++||+.|+|++||++|+||.+....+.
T Consensus 396 G~~~Gl~~~~-~~~~~~RAvlEgia~~~~~~l~--~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~ 472 (536)
T TIGR01234 396 GVITGLTLAT-DAPLLYRALIEATAFGTRMIME--TFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQA 472 (536)
T ss_pred EEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcc
Confidence 7999999997 9999999999999999999999 466655 6899999996479999999999999999998877664
Q ss_pred hh
Q psy224 351 RD 352 (547)
Q Consensus 351 ~~ 352 (547)
.+
T Consensus 473 ~a 474 (536)
T TIGR01234 473 PA 474 (536)
T ss_pred hh
Confidence 43
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=434.13 Aligned_cols=334 Identities=16% Similarity=0.206 Sum_probs=268.4
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHH----------HHHHHHH---------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVR----------KIVSTLH--------- 63 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~----------~~~~~~~--------- 63 (547)
++|+||||+|||++|++|+|.+|++ +++++.+|+..+|.. ..+|++||||+ .||+++.
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~v-v~~a~~~~~~~~~~~--~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~~ 83 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRI-VASEIVHFDSDLPHY--GTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAKE 83 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCE-EEEEEecCCcccCcC--CCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHHc
Confidence 5799999999999999999999998 999999997555432 34566778777 6777432
Q ss_pred --------------------------------------------------HHHhhCCchhhhhhceeccC----------
Q psy224 64 --------------------------------------------------NCILRLPKDHLKQVKHIEST---------- 83 (547)
Q Consensus 64 --------------------------------------------------~~i~~~d~r~~~~~~~i~~~---------- 83 (547)
+++.|+|.|+.++++.+...
T Consensus 84 ~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~ 163 (556)
T PLN02669 84 KFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKL 163 (556)
T ss_pred CCChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHH
Confidence 33469999988777554210
Q ss_pred -----------------------------CCcchhhHHHHHHhCCCCC-ccccccccccccccccCCCccHHHHHhcCCC
Q psy224 84 -----------------------------NDLSFQDFIVAMLCDLQEP-VMSNQNAASWGYFNCKLSTWNEQILRNHEPS 133 (547)
Q Consensus 84 -----------------------------~~l~~~d~l~~~LtG~~~~-~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~ 133 (547)
.++.++|||.|+||| +. .+|+|+||+|+|||+++++|++++|+.++++
T Consensus 164 tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG--~~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~~~ 241 (556)
T PLN02669 164 TGSRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVG--DYASIDETDGAGMNLMDIEKRCWSKAALEATAPG 241 (556)
T ss_pred HCCcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcC--CCccccchhhhhhhhhccccCCcCHHHHHhhCcc
Confidence 157899999999999 85 6999999999999999999999999999655
Q ss_pred CCCCCCCCcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cc
Q psy224 134 FPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MG 203 (547)
Q Consensus 134 i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~ 203 (547)
++ ++||+++++++++|+|++++ +||++||||++|++|++|+++|+|+. +|++.+|+|||+++.++++ .+
T Consensus 242 l~-~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~~~~~~~~~ 320 (556)
T PLN02669 242 LE-EKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITREPQPSLEG 320 (556)
T ss_pred HH-HHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecCCCCCCCCc
Confidence 54 78999999999999999997 99999999999999999999999996 7999999999998765532 11
Q ss_pred cc----c-ccchhH---HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCC----C
Q psy224 204 AS----M-NGGNCL---ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIA----E 271 (547)
Q Consensus 204 ~~----~-~gg~~~---~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~----~ 271 (547)
.. . ++.+.. ..++|.+++|+++.+.. ..++.+++++. ..++++++++++||+.||+.|+. .
T Consensus 321 ~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~~-~~~~~~~~~~~------~~~~g~~g~l~~~~~~~e~~P~~~~~~~ 393 (556)
T PLN02669 321 HVFPNPVDPESYMVMLCYKNGSLTREDIRNRCAD-GSWDVFNKLLE------QTPPLNGGKLGFYYKEHEILPPLPVGFH 393 (556)
T ss_pred ceeeCccCCCCeEEEEEecchHHHHHHHHHHhcc-CcHHHHHHHHH------hCCCCCCCEEEeeccCcccCCCCCCccc
Confidence 11 1 222211 35678899999998632 23455555543 24567889998899999999963 2
Q ss_pred C---ceEEecccCC--------CCHHHHHHHHHHHHHHHHHHhhhhhhhhh-cCCcEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 272 S---ASVTHITIQN--------LGVTKLFVALCEGIINNIHDIMNRSVLHR-SGINRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 272 ~---~~~~gl~~~~--------~~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g~~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
+ |.|.|++..+ +++.|++||++||++|.+|.+++. +.. ..+++|+++||| +||+.|+|++||++|
T Consensus 394 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~--l~~~~~~~~i~~~GGg-s~s~~w~Qi~ADVlg 470 (556)
T PLN02669 394 RYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAER--FGMPVPPKRIIATGGA-SANQSILKLIASIFG 470 (556)
T ss_pred hhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHH--HhCCCCCcEEEEEcCh-hcCHHHHHHHHHHcC
Confidence 2 6788887762 389999999999999999999995 533 237899999998 999999999999999
Q ss_pred CceEEecchhhhh
Q psy224 340 LQLIVEQDQAMRD 352 (547)
Q Consensus 340 ~~v~~~~~~~~~~ 352 (547)
+||.+.+.++..+
T Consensus 471 ~pV~~~~~~ea~a 483 (556)
T PLN02669 471 CDVYTVQRPDSAS 483 (556)
T ss_pred CCeEecCCCCchH
Confidence 9999988766433
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-46 Score=393.31 Aligned_cols=310 Identities=14% Similarity=0.189 Sum_probs=236.8
Q ss_pred EEEEeCCceeEEEEEecC---CCeee-cccccccccCCCCcCCCCCCccccCHHHHHHHHH-------------------
Q psy224 7 LGIDIGTTSVKVCLIDAN---TREEL-SSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLH------------------- 63 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~---g~~~l-~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~------------------- 63 (547)
||||+|||++|++|+|.+ |++ + ++...+++.. .+.+++.+||++.||+++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~i~~Igis 74 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKL-TLEEIHRFKNGL-----VSQNGHECWDIDALEQEIRLGLNKVDAEGIAPDSIGID 74 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceE-EEEEEEeCCCCC-----EeECCEEEEehHHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 589999999999999998 444 4 4555554332 3577899999999998543
Q ss_pred -----------------HHHhhCCchhhhhhceeccC--------------------------------------CCcch
Q psy224 64 -----------------NCILRLPKDHLKQVKHIEST--------------------------------------NDLSF 88 (547)
Q Consensus 64 -----------------~~i~~~d~r~~~~~~~i~~~--------------------------------------~~l~~ 88 (547)
++|.|.|.|+.++++.+... .++++
T Consensus 75 ~q~~~~v~~D~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~ 154 (454)
T TIGR02627 75 TWGVDFVLLDQNGQRVGDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVAHFLLI 154 (454)
T ss_pred ccceeEEEEcCCCCCccCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHHHHHhCCH
Confidence 44678999987766554211 15789
Q ss_pred hhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCCCCCeEEe-
Q psy224 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINV- 167 (547)
Q Consensus 89 ~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~~g~~V~~- 167 (547)
+|||.|+||| +.++|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|.+++ .|+ +++||++
T Consensus 155 ~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~l~~~~~~~G~~~~--~gl-~g~pVv~~ 227 (454)
T TIGR02627 155 PDYLNYRLTG--KKVWEYTNATTTQLVNINTDDWDEDLLAYL--GVPAAWFGRPTHPGNVIGLWEC--PQG-NQIPVVAV 227 (454)
T ss_pred HHHHHHheeC--CceeeeehhhhcccccCCCCCcCHHHHHHc--CCCHHHcCCccCCCCeeEEeec--ccC-CCCCEEEE
Confidence 9999999999 999999999999999999999999999999 5999999999999999999865 466 7899998
Q ss_pred cCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cc----ccc----ccchhH--HHHHhHHHHHHHHhCCCC
Q psy224 168 ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MG----ASM----NGGNCL--ATFVCTLQNWFKEFGFNV 230 (547)
Q Consensus 168 g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~----~~~----~gg~~~--~~~~g~~~~w~~~~~~~~ 230 (547)
|+||++|+++|+|+. +|++++++|||.++...++ .+ ..+ .+.+.+ ...++ |+++.+...
T Consensus 228 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----W~~~~~~~~ 303 (454)
T TIGR02627 228 ATHDTASAVVAAPLQGENAAYLSSGTWSLMGFESQTPITNEQALAANITNEGGADGRYRVLKNIMGL----WLLQRVCRE 303 (454)
T ss_pred CCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccCCCCCCCHHHHHhccccccccccEEEeecchhhh----HHHHHHHhh
Confidence 999999999999997 7999999999998765432 11 001 111111 12223 555532110
Q ss_pred chhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCc----------eEEecccCCCCHHHHHHHHHHHHHHHH
Q psy224 231 PQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESA----------SVTHITIQNLGVTKLFVALCEGIINNI 300 (547)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~----------~~~gl~~~~~~~~~l~ra~~Egia~~~ 300 (547)
.....++++.+.. ...++ +.|++.|++.|++++. .|+|++..| +++||+||++||++|.+
T Consensus 304 ~~~~~~~~l~~~a---~~~p~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~-~~~~l~RAv~Egva~~~ 373 (454)
T TIGR02627 304 RDINDLPALIEQA---QALPA------FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPE-SDAELARCIFDSLALLY 373 (454)
T ss_pred hccccHHHHHHHh---cCCCC------CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHHH
Confidence 0112234443221 12222 4466788888887763 459999998 99999999999999999
Q ss_pred HHhhhhhhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 301 HDIMNRSVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 301 ~~~~~~~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
|++++ .+++. + +++|+++||| +||+.|+|++||++|+||....
T Consensus 374 r~~~e--~l~~~~~~~~~~i~~~GGg-a~s~~w~Qi~ADvlg~pV~~~~ 419 (454)
T TIGR02627 374 RQVLL--ELAELRGKPISQLHIVGGG-SQNAFLNQLCADACGIRVIAGP 419 (454)
T ss_pred HHHHH--HHHHhhCCCcCEEEEECCh-hhhHHHHHHHHHHhCCceEcCC
Confidence 99999 47653 4 6899999998 9999999999999999998765
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=358.68 Aligned_cols=338 Identities=18% Similarity=0.235 Sum_probs=276.9
Q ss_pred CceEEEEEeCCceeEEEEEecC-CCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN-TREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC---------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~-g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~---------------- 65 (547)
|.|+||||+||.|.|+++||.. |++ ++.+.++|+... +.+...||+++++|++++.+
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~-la~a~~p~~~~~-----~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~ 75 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTL-LARAVRPYPMWQ-----PGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVV 75 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcc-hhhcccceeccc-----cCccccccCHHHHHHHHHHHHHHHHHHcCCChhHee
Confidence 6899999999999999999987 998 999999998765 46777899999999977655
Q ss_pred --------------------------------HhhCCchhhhhhceeccC------------------------------
Q psy224 66 --------------------------------ILRLPKDHLKQVKHIEST------------------------------ 83 (547)
Q Consensus 66 --------------------------------i~~~d~r~~~~~~~i~~~------------------------------ 83 (547)
|.|+|.|+.++++.|+.+
T Consensus 76 gIGvDaTcSlvv~d~~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~ 155 (544)
T COG1069 76 GIGVDATCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPA 155 (544)
T ss_pred EEEEcceeeeEEECCCCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChH
Confidence 568888888887777643
Q ss_pred ------CCcchhhHHHHHHhCCCCCccccccccccccccc-cCCCccHHHHHhcCCCCCC---CCCC-CcccCCccceee
Q psy224 84 ------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNC-KLSTWNEQILRNHEPSFPL---HLLP-KIQPSGTIVGTL 152 (547)
Q Consensus 84 ------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~-~~~~W~~~ll~~~g~~i~~---~~Lp-~i~~~~~~~G~v 152 (547)
.++.+.|||.|+||| +..-+.+++.....|.- +++-|++++++.+|++.-. .+|| ++++.|+.+|.+
T Consensus 156 ~~~~a~~~fdl~D~l~~~ltG--~~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~L 233 (544)
T COG1069 156 VWERAAHIFDLADWLTWKLTG--SIARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGL 233 (544)
T ss_pred HHHHhhhhhhHHHHHHHHhhc--chhhccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCcccccCCcccccc
Confidence 157899999999999 88888888877778888 5566999999999754332 4577 889999999999
Q ss_pred cccc---cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------------cccccccchhH---H
Q psy224 153 TRDW---LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------------MGASMNGGNCL---A 213 (547)
Q Consensus 153 ~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------------~~~~~~gg~~~---~ 213 (547)
++++ +||+++|.|++|..|..++++|++.. ++.++..+|||+|.+..++ .++..+|-..+ |
T Consensus 234 t~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQ 313 (544)
T COG1069 234 TPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQ 313 (544)
T ss_pred CHHHHHHhCCCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccc
Confidence 9998 99999999999999999999999965 8999999999999876643 12233433222 5
Q ss_pred HHHhHHHHHHHHhC--------CCCc-hhHHHHHHHhc----cCcccccccCCCCeEEecCccCcccCCCCC---ceEEe
Q psy224 214 TFVCTLQNWFKEFG--------FNVP-QNQIWAKLINA----SDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTH 277 (547)
Q Consensus 214 ~~~g~~~~w~~~~~--------~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~g 277 (547)
+.+|.+++||.+.. .... ..+.++.+.+. ........+.+++++++|+++|.|+|+.|+ |.|+|
T Consensus 314 SatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~f~GNRsP~aDp~l~G~i~G 393 (544)
T COG1069 314 SATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITG 393 (544)
T ss_pred hhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEecccccCCcCCCCCccceeEEec
Confidence 78899999999973 1111 11222222111 112335667899999999999999999986 89999
Q ss_pred cccCCCCHH---HHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 278 ITIQNLGVT---KLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 278 l~~~~~~~~---~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
++++| +.+ .+|+|.+|+++|..|++++ .+++.| +++|+++||. .||++|||++||++|+|++++..++...
T Consensus 394 ltL~T-~~~~l~~lY~a~l~a~A~GtR~Iie--~~~~~g~~Id~l~~sGG~-~KN~llmql~aDvtg~~v~i~~s~~a~l 469 (544)
T COG1069 394 LTLDT-SPESLALLYRALLEATAFGTRAIIE--TFEDQGIAIDTLFASGGI-RKNPLLMQLYADVTGRPVVIPASDQAVL 469 (544)
T ss_pred cccCC-CcHHHHHHHHHHHHHHHHhHHHHHH--HHHHcCCeeeEEEecCCc-ccCHHHHHHHHHhcCCeEEeecccchhh
Confidence 99998 888 9999999999999999999 588887 7999999997 9999999999999999999997766544
|
|
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=350.04 Aligned_cols=335 Identities=25% Similarity=0.365 Sum_probs=271.7
Q ss_pred CceEEEEEeCCceeEEEEEe-cCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLID-ANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC---------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d-~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~---------------- 65 (547)
+++++|||+||||.|++|+| .+|+. ++.+..++.... +.+||.||+|.++|+++++|
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~-l~~~~~~i~~~~-----~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~ 78 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGEL-LSLAQKEITQEF-----PKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVV 78 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCcc-ceeeeeeeeeec-----CCCCeEEeCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 58999999999999999999 68887 899988886644 58999999999999977766
Q ss_pred ----------------------------HhhCCchhhhhhceeccCC---------------------------------
Q psy224 66 ----------------------------ILRLPKDHLKQVKHIESTN--------------------------------- 84 (547)
Q Consensus 66 ----------------------------i~~~d~r~~~~~~~i~~~~--------------------------------- 84 (547)
|.|+|.|+..+++.+....
T Consensus 79 ~~~~igv~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~ 158 (516)
T KOG2517|consen 79 GATCIGVVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNVPE 158 (516)
T ss_pred ccEEEEEEecCCceEEeecCCCCcccceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhCHH
Confidence 5678888877777664220
Q ss_pred --------Ccchhh---HHHHHHhCCCC-CccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceee
Q psy224 85 --------DLSFQD---FIVAMLCDLQE-PVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTL 152 (547)
Q Consensus 85 --------~l~~~d---~l~~~LtG~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v 152 (547)
++..++ |+.+++|+... +.+|.++||++++||..++.||..+++.+ ++|.+.||++..+++++|++
T Consensus 159 ~~~~~~~~~~~~~~~~twl~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~--~lp~~llp~i~s~~e~~g~~ 236 (516)
T KOG2517|consen 159 VLKAKEEGGFDLGTFDTWLATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKLLDFF--GLPLNLLPDIRSSSEVYGTT 236 (516)
T ss_pred HHHHHHhcccchhhhhhheeecCCccceeccccccccccccccchhhhhhhhhhhhhh--CCCcccCCcccccccccccc
Confidence 234444 45555555323 67899999999999999999999999999 69999999999999999998
Q ss_pred cccccCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-------cc-------cccccch---hH--
Q psy224 153 TRDWLGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-------MG-------ASMNGGN---CL-- 212 (547)
Q Consensus 153 ~~~~~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-------~~-------~~~~gg~---~~-- 212 (547)
....+|+.+|+||.+..+|++|+++|..+. +++...++||+..+..+.. .| .+-.|.. .+
T Consensus 237 ~~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg 316 (516)
T KOG2517|consen 237 AAGDLGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEG 316 (516)
T ss_pred cccccccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhc
Confidence 777788999999999999999999999887 6899999999998865531 11 1111211 11
Q ss_pred -HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHH
Q psy224 213 -ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKL 288 (547)
Q Consensus 213 -~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l 288 (547)
...++.+++|+++.+.-..+...+++++.. .....+++|.|.|.|.|+|+|++ |.+.|++.++ +.+||
T Consensus 317 ~~a~~~~~v~w~~d~~~i~~~~~~i~~~~~~-------~~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~t-s~~hi 388 (516)
T KOG2517|consen 317 HAAFAGALVQWLRDNLGIIEELNEIEKLAAE-------VNLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDT-SKEHL 388 (516)
T ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHh-------hcccCceEEEccccCCCCCCCCcccceeEEEecCCC-CHHHH
Confidence 244778999999975333333444554432 23678999999999999999996 8999999998 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh-c--CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhhhc
Q psy224 289 FVALCEGIINNIHDIMNRSVLHR-S--GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDASYA 356 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~-~--g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~~~ 356 (547)
.||++|+|+|+.|++++. ++. . +++++++.|| ++||++++|++||++|+||.+++..+..+.+++
T Consensus 389 a~A~leai~fqtr~Il~a--m~~~~~~~i~~L~~~GG-~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA 456 (516)
T KOG2517|consen 389 ARAALEAIAFQTREILEA--MERDGGHPISTLRVCGG-LSKNPLLMQLQADILGLPVVRPQDVEAVALGAA 456 (516)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhcCCCcceeeeccc-cccCHHHHHHHHHHhCCccccccchhHHHHHHH
Confidence 999999999999999995 544 3 4889999999 599999999999999999999998887655544
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=348.27 Aligned_cols=282 Identities=16% Similarity=0.192 Sum_probs=213.5
Q ss_pred CCCCccccCHHHHHHHH------------------------------------HHHHhhCCchhhhhhceeccC------
Q psy224 46 SNPGAHEQNVRKIVSTL------------------------------------HNCILRLPKDHLKQVKHIEST------ 83 (547)
Q Consensus 46 ~~~g~~e~d~~~~~~~~------------------------------------~~~i~~~d~r~~~~~~~i~~~------ 83 (547)
+.+++.++||+.||+++ +++|.|+|+|+.++++.+...
T Consensus 26 ~~~~~~~~d~~~~~~~i~~~l~~~~~~~~~I~~Igis~q~~~~v~lD~~G~pL~pai~w~D~Ra~~~~~~l~~~~~~~~~ 105 (471)
T PRK10640 26 SQDGFDTWDVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDYVLLDKQGQRVGLPVSYRDSRTDGVMAQAQQQLGKRDI 105 (471)
T ss_pred eeCCeeEECHHHHHHHHHHHHHHHhhcCCCccEEEEcCCcccEEEECCCCCCcCCceeccCCCCHHHHHHHHHhcCHHHH
Confidence 57789999999999854 444788999987666544211
Q ss_pred --------------------------------CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcC
Q psy224 84 --------------------------------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE 131 (547)
Q Consensus 84 --------------------------------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g 131 (547)
.+++++|||.|+||| +.++|+|+||+|+|||+++++||+++++.+
T Consensus 106 ~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG--~~~~d~s~as~t~l~d~~~~~W~~ell~~~- 182 (471)
T PRK10640 106 YRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYRLTG--KMNWEYTNATTTQLVNINSDDWDESLLAWS- 182 (471)
T ss_pred HHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHHHhC--CcceeecHhhhccccCCCcCCcCHHHHHHc-
Confidence 157999999999999 999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCccceeecccccCCCCCCeEEe-cCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-c------
Q psy224 132 PSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINV-ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-M------ 202 (547)
Q Consensus 132 ~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~~g~~V~~-g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-~------ 202 (547)
+|++++||+++++++++|.+++++ | .|+||++ |+||++|+++|+|+. ++++++|+|||+++.++++ .
T Consensus 183 -Gi~~~~LP~lv~~~~~~G~v~~~~-g--~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GT~~~~~~~~~~p~~~~~~ 258 (471)
T PRK10640 183 -GAPKAWFGRPTHPGNVIGHWICPQ-G--NEIPVVAVASHDTASAVIASPLNDSDAAYLSSGTWSLMGFESQTPFTNDTA 258 (471)
T ss_pred -CCCHHHcCCCcCCCccceeeeccc-C--CCCCEEEeCCCcHHHHhhccCCCCCCeEEEEeccHhhhheecCCCcCCHHH
Confidence 599999999999999999998764 5 6899998 699999999999997 7999999999998865532 0
Q ss_pred ---cccc----ccchhH-HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCC--CC
Q psy224 203 ---GASM----NGGNCL-ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIA--ES 272 (547)
Q Consensus 203 ---~~~~----~gg~~~-~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~--~~ 272 (547)
+..+ ++.+.+ ....| .|+++.+........++++.+. +.+. +++++++ +| .|+|.+.. .+
T Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~g---~W~~~~~~~~~~~~~~~~l~~~---a~~~-~g~~gli-~p--~ger~~~~~~ar 328 (471)
T PRK10640 259 LAANITNEGGAEGRYRVLKNIMG---LWLLQRVLQERQITDLPALIAA---TAAL-PACRFLI-NP--NDDRFINPPSMC 328 (471)
T ss_pred HHhccCccCCCCceEEEecchhH---HHHHHHHHHHhccCCHHHHHHH---HHhC-CCCCcee-CC--CcccccCchhhH
Confidence 1111 111111 11222 7999864311000112233221 1223 3677876 58 79995321 13
Q ss_pred ceEEecccCC-----CCHHHHHHHHHHHHHHHHHHhhhhhhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEE
Q psy224 273 ASVTHITIQN-----LGVTKLFVALCEGIINNIHDIMNRSVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 273 ~~~~gl~~~~-----~~~~~l~ra~~Egia~~~~~~~~~~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
|+|+|++..| ++++||+||++||++|.+|.+++ .+++. + +++|+++||| +||++|+|++||++|+||..
T Consensus 329 g~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~--~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvlg~pV~~ 405 (471)
T PRK10640 329 SEIQAACRETAQPVPESDAELARCIFDSLALLYADVLH--ELAQLRGEPFSQLHIVGGG-CQNALLNQLCADACGIRVIA 405 (471)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHhCCCcceEEEECCh-hhhHHHHHHHHHHhCCCeee
Confidence 7885555542 28999999999999999999999 47653 4 6899999998 99999999999999999987
Q ss_pred ecc
Q psy224 345 EQD 347 (547)
Q Consensus 345 ~~~ 347 (547)
.+.
T Consensus 406 ~~~ 408 (471)
T PRK10640 406 GPV 408 (471)
T ss_pred CCh
Confidence 664
|
|
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=267.93 Aligned_cols=189 Identities=54% Similarity=0.951 Sum_probs=174.9
Q ss_pred hccCCCCCCeeeccc-cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAV-VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~-~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
.++|+++|+|+.+.. .++.+.+++++++.|||+||+|||+.++++|++|+..++++|++|+++|++||++|+|+.+.+.
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~ 82 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHK 82 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHH
Confidence 459999999999984 2333458999999889999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.+..++.....+++||+++|.++++++.||+..++.|.+.|.+|||||+|.|++..+++.+.+|+++|+|+.++++|.
T Consensus 83 aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~ 162 (194)
T COG0450 83 AWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQF 162 (194)
T ss_pred HHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 99999777776667999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred hhhcCccccCCccCCCcccccCccchhcccc
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADPSGSQEYFK 544 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 544 (547)
.+++|+.||+||++|+++|++..+. .++++
T Consensus 163 ~~~hg~vcPanW~~G~~~i~p~~~~-~~~~~ 192 (194)
T COG0450 163 VAKHGEVCPANWKPGDKTIKPSPDL-GEYLK 192 (194)
T ss_pred HHHhCCCccCCCCCCCccccCCccc-hhhhh
Confidence 9999999999999999999998776 66654
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=266.07 Aligned_cols=181 Identities=34% Similarity=0.665 Sum_probs=164.7
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
+.+|.++|+|+.+.+.+|++..+++++++||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|++..+++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 34999999999998777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.+..+.. .+++||+++|++.++++.||+..+..+...|++||||++|+|++.++.+...+++.+++|+.|+++|+.
T Consensus 82 ~~~~~~~~---~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~ 158 (187)
T PRK10382 82 WHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYV 158 (187)
T ss_pred HHHhhccc---cCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhH
Confidence 99764321 278999999999999999999765556667999999999999999988888888999999999999999
Q ss_pred hhc-CccccCCccCCCcccccCccc
Q psy224 515 AEH-GEVCPAGWKPGSKTMKADPSG 538 (547)
Q Consensus 515 ~~~-~~~~~~~w~~~~~~~~~~~~~ 538 (547)
+++ |..||+||++|+++|...+..
T Consensus 159 ~~~~g~~~p~~w~~~~~~~~~~~~~ 183 (187)
T PRK10382 159 ASHPGEVCPAKWKEGEATLAPSLDL 183 (187)
T ss_pred hhcCCeEeCCCCCcCCcceecCHHH
Confidence 999 899999999999999887643
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=270.33 Aligned_cols=190 Identities=43% Similarity=0.856 Sum_probs=167.6
Q ss_pred ccCCCCCCeeeccccC--Cce-eeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhh
Q psy224 356 ALEKPAPEFEGQAVVN--GQF-KNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~--G~~-~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~ 431 (547)
.+|+++|+|++++ .. |+. +.++++++ +||++||+|||++|||+|+.|+++|++++++|+++|++|++||+|+...
T Consensus 3 ~vg~~aPdF~~~~-~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~ 81 (200)
T PRK15000 3 LVTRQAPDFTAAA-VLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV 81 (200)
T ss_pred cCCCcCCCCEeec-ccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 4899999999998 43 421 24566766 8999999999889999999999999999999999999999999999988
Q ss_pred HHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++|.+...+.....+++||+++|++.++++.||+..+..+...|++||||++|+|++.+.++.+.+++++++|+.|+++
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88887653332222257999999999999999999866667779999999999999999999999999999999999999
Q ss_pred HhhhhcCccccCCccCCCcccccCccchhcccccC
Q psy224 512 QFVAEHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 512 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
|...++|+.||++|++|+++|.+..++.++||.++
T Consensus 162 ~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 196 (200)
T PRK15000 162 QFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLAEN 196 (200)
T ss_pred hhHHhcCCCcCCCCCCCCceeccCHHHHHHHHHHh
Confidence 99999999999999999999999999999998764
|
|
| >KOG0852|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=248.24 Aligned_cols=191 Identities=72% Similarity=1.202 Sum_probs=184.1
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
+..++|+|+-..+++|.++.++|++|+||+++++|||..+.-+|++++-.++..+++|++.|.+|+++|+|+.+.+.+|.
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ 85 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWI 85 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHh
Confidence 56677999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhhh
Q psy224 437 NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAE 516 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~ 516 (547)
+.-++...-..+++|+++|.+.++++.||+..++.|.+.+..||||++|.+|++.+++.+.+|+++|++++++++|.+.+
T Consensus 86 ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~td~ 165 (196)
T KOG0852|consen 86 NTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQFTDE 165 (196)
T ss_pred cCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhhhhc
Confidence 99888877777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCccCCCcccccCccchhcccccCC
Q psy224 517 HGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 517 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
+|..||++|+||+++|+++++++|+||..+|
T Consensus 166 ~geVcPagW~pgs~tikp~~~~skeyf~k~~ 196 (196)
T KOG0852|consen 166 HGEVCPAGWKPGSDTIKPDVKDSKEYFSKHN 196 (196)
T ss_pred cCccccCCCCCCCcccCCCcchhHHHHhhcC
Confidence 9999999999999999999999999999887
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=274.06 Aligned_cols=189 Identities=40% Similarity=0.795 Sum_probs=168.5
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
..+|+++|+|+++++.+|+++.++++++ +||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|+++.++
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~ 147 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHK 147 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 4599999999998744675567999998 899999999999999999999999999999999999999999999988888
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.+...+.....+++||+++|++.+++++||+..+ .|.+.|++||||++|+|++.++.+.+.+++++|+|+.|+++|.
T Consensus 148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~ 226 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQF 226 (261)
T ss_pred HHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhch
Confidence 888742222222378999999999999999998753 3557899999999999999998888999999999999999999
Q ss_pred hhhcCccccCCccCCCcccccCccchhcccc
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADPSGSQEYFK 544 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 544 (547)
..++|+.||++|++|+++|.+.+...++||.
T Consensus 227 ~~~~g~~cPanW~~g~~~~~~~~~~~~~~~~ 257 (261)
T PTZ00137 227 AEKTGNVCPVNWKQGDQAMKPDSQSVKQYLS 257 (261)
T ss_pred hhhcCCCcCCCCCcCCceecCCcccHHHHHh
Confidence 9999999999999999999999988888875
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=259.01 Aligned_cols=183 Identities=37% Similarity=0.681 Sum_probs=161.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|++++ ..| .+++++++||++||+|||++|||+|+.+++.|++++++|+++|++|++||+|+.+.+.+|
T Consensus 3 ~vG~~aP~F~~~~-~~g---~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w 78 (202)
T PRK13190 3 KLGQKAPDFTVNT-TKG---PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAW 78 (202)
T ss_pred CCCCCCCCcEEec-CCC---cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 3899999999998 777 699999999999998888999999999999999999999999999999999999888888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.++..+.... .++||+++|++++++++||+.....+...|++||||++|+|++...++...+++++|+++.|+++|...
T Consensus 79 ~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~ 157 (202)
T PRK13190 79 LRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNW 157 (202)
T ss_pred HHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHH
Confidence 8754332211 378999999999999999997655566789999999999999999888888999999999999999999
Q ss_pred hcCccccCCccCCCcccccCc---cchhccc
Q psy224 516 EHGEVCPAGWKPGSKTMKADP---SGSQEYF 543 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~---~~~~~~~ 543 (547)
++|+.||+||++|+++|++.. ++.+.+|
T Consensus 158 ~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 188 (202)
T PRK13190 158 KRKVATPANWQPGQEGIVPAPSTLDEAEMRI 188 (202)
T ss_pred hcCCCcCCCCCcCCceecCCCCCHHHHHHHh
Confidence 999999999999999999964 4445555
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=259.53 Aligned_cols=177 Identities=38% Similarity=0.674 Sum_probs=157.1
Q ss_pred hccCCCCCCeeeccccCCceeeEecc-CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLS-QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~-~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
..+|+++|+|++++ .+| .+++. +++||++||+|||++|||+|+.+++.|++++++|+++|++|++||+|+...+.
T Consensus 7 ~~iG~~aPdF~l~~-~~G---~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~ 82 (215)
T PRK13191 7 PLIGEKFPEMEVIT-THG---KIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHI 82 (215)
T ss_pred ccCCCcCCCCEeec-CCC---CEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 34999999999998 788 46664 47999999999999999999999999999999999999999999999998888
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC-CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET-GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~-g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|.+..++.... +++||+++|++.++++.||+..+.. +...|++||||++|+|++.++++.+.+++++|+|+.|+++|
T Consensus 83 aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 83 EWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred HHHhhHHHhcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 887654332222 7899999999999999999975432 45689999999999999999999999999999999999999
Q ss_pred hhhhcCccccCCccC----CCcccccCc
Q psy224 513 FVAEHGEVCPAGWKP----GSKTMKADP 536 (547)
Q Consensus 513 ~~~~~~~~~~~~w~~----~~~~~~~~~ 536 (547)
...++|+.||+||++ |+++|++..
T Consensus 162 ~~~~~~~~~P~~w~~~~~~g~~~~~~~~ 189 (215)
T PRK13191 162 LVDKAGVVTPANWPNNELIGDKVINPAP 189 (215)
T ss_pred hhhhcCCCcCCCCCCCCCCCCceecCCC
Confidence 999999999999997 999999965
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=258.63 Aligned_cols=190 Identities=64% Similarity=1.127 Sum_probs=166.8
Q ss_pred ccCCCCCCeeecccc-CCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~-~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|+++++. +++++.+++++++||++||+|||++||++|+.++++|++++++|+++|++|++||.|+...+.+
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~ 86 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQ 86 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHH
Confidence 389999999987621 3444689999999999999999999999999999999999999999999999999999888777
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|....+......+++||+++|+++++++.||+...+.+...|++||||++|+|++.++++.+.+++++++++.|+++|..
T Consensus 87 ~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~ 166 (199)
T PTZ00253 87 WTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFV 166 (199)
T ss_pred HHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhH
Confidence 76533221112258999999999999999999866556678999999999999999999888999999999999999999
Q ss_pred hhcCccccCCccCCCcccccCccchhccccc
Q psy224 515 AEHGEVCPAGWKPGSKTMKADPSGSQEYFKT 545 (547)
Q Consensus 515 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 545 (547)
.+++++||++|++|+++|++.++..+.++..
T Consensus 167 ~~~~~~cp~~w~~g~~~~~~~~~~~~~~~~~ 197 (199)
T PTZ00253 167 EKHGEVCPANWKKGDPTMKPDPNKSKEGFFS 197 (199)
T ss_pred HhcCCEeCCCCCcCCccccCChHHHHHHhhc
Confidence 9999999999999999999998888887754
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=257.10 Aligned_cols=183 Identities=36% Similarity=0.623 Sum_probs=161.9
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
+|+.+|+|++++ .+| .+++++++| |++||+|||++|||+|+.+++.|++++++|+++|++|++||.|+.+.+.+|
T Consensus 1 vG~~aP~F~~~~-~~g---~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADT-THG---PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEec-CCC---cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 588999999998 777 689999998 788888888999999999999999999999999999999999999888888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccC--CCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE--TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~--~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
.++.+.+.+ .+++||+++|+++++++.||+.... .+...|++||||++|+|++.++++...+++++++++.|+++|.
T Consensus 77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 887554443 4899999999999999999987543 2345689999999999999999898889999999999999999
Q ss_pred hhhcCccccCCccCCCcccccCc---cchhcccc
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADP---SGSQEYFK 544 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~ 544 (547)
+.++++.||+||++|+++|++.. ++.+..|+
T Consensus 156 ~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 189 (203)
T cd03016 156 TDKHKVATPANWKPGDDVIVPPSVSDEEAKKKFP 189 (203)
T ss_pred HhhcCcCcCCCCCCCCceecCCCCCHHHHHHhcc
Confidence 99999999999999999999953 55555553
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=251.61 Aligned_cols=178 Identities=41% Similarity=0.773 Sum_probs=158.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|+++++.+|+.+.+++++++||++||+|||++|||+|+.+++.|++++++|+++|++|++||.|+.+.+++|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~ 82 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW 82 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence 48999999999984467444788999999999999999999999999999999999999999999999999998888888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+..... .+++||+++|++.++++.||+..+..+...|++||||++|+|++.++...+..++++++++.|++++.+.
T Consensus 83 ~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 159 (187)
T TIGR03137 83 HDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYVA 159 (187)
T ss_pred Hhhhhhc---cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHH
Confidence 7753211 2689999999999999999998655555679999999999999999877777789999999999999999
Q ss_pred hc-CccccCCccCCCcccccCc
Q psy224 516 EH-GEVCPAGWKPGSKTMKADP 536 (547)
Q Consensus 516 ~~-~~~~~~~w~~~~~~~~~~~ 536 (547)
++ |+.||++|.+++++|..++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (187)
T TIGR03137 160 AHPGEVCPAKWKEGAETLKPSL 181 (187)
T ss_pred hcCCeeeCCCCCcCCccccCCh
Confidence 99 8999999999999998875
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=254.85 Aligned_cols=185 Identities=30% Similarity=0.534 Sum_probs=161.4
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|++.+ .+| +...+++++||++||+|||++|||+|+.+++.|++++++|+++|++|++||+|+.+.+.+|
T Consensus 3 ~~Gd~aPdF~l~t-~~G--~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVVT-TQG--VKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeEC-CCC--cEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 4899999999998 788 4666789999999888888999999999999999999999999999999999999888888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC-cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g-~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
.+..++.. ..+++||+++|++.++++.||+..+..+ ...|++||||++|+|++.++++...+++++++++.|+++|.+
T Consensus 80 ~~~i~~~~-~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~ 158 (215)
T PRK13599 80 VEWIKDNT-NIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTA 158 (215)
T ss_pred HHhHHHhc-CCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 77543221 1278999999999999999998754322 257999999999999999988888889999999999999999
Q ss_pred hhcCccccCCccC----CCcccccC---ccchhcccc
Q psy224 515 AEHGEVCPAGWKP----GSKTMKAD---PSGSQEYFK 544 (547)
Q Consensus 515 ~~~~~~~~~~w~~----~~~~~~~~---~~~~~~~~~ 544 (547)
.++++.||+||++ |++||++. .++.+..|+
T Consensus 159 ~~~~~~~p~~w~~~~~~g~~~~~~~~~~~~~~~~~~~ 195 (215)
T PRK13599 159 DQYGVALPEKWPNNYLIKDHVIVPPSTDEASANERKE 195 (215)
T ss_pred hhcCCCcCCCCCCCCCCCCcEEEcCCCCHHHHHHhcc
Confidence 9999999999999 99999994 256566665
|
|
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=254.75 Aligned_cols=185 Identities=37% Similarity=0.636 Sum_probs=162.4
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
..+|+.+|+|++++ .+| .++++++ +||++||+|||++|||+|+++++.|++++++|+++|++|++||+|+...+.
T Consensus 9 ~~vG~~aPdF~~~~-~~g---~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~ 84 (222)
T PRK13189 9 PLIGDKFPEFEVKT-THG---PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHI 84 (222)
T ss_pred ccCCCcCCCcEeEc-CCC---CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH
Confidence 34899999999998 788 5788775 999999999999999999999999999999999999999999999998888
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC-CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET-GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~-g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|.+..++.... +++||+++|.+.+++++||+..... +...|++||||++|+|++.++++.+.+++++++++.|+++|
T Consensus 85 aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 85 KWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 888865432211 5899999999999999999875332 34689999999999999999989989999999999999999
Q ss_pred hhhhcCccccCCccCCC----cccccCc---cchhcccc
Q psy224 513 FVAEHGEVCPAGWKPGS----KTMKADP---SGSQEYFK 544 (547)
Q Consensus 513 ~~~~~~~~~~~~w~~~~----~~~~~~~---~~~~~~~~ 544 (547)
...++|+.||+||++|+ ++|++.. ++.+..|+
T Consensus 164 ~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~ 202 (222)
T PRK13189 164 TSDEKGVATPANWPPNDLIKDKVIVPPASSVEEAKKRLE 202 (222)
T ss_pred hHhhcCcCcCCCCCCCCCCCCceeeCCCCCHHHHHHhhc
Confidence 99999999999999999 9999963 56666664
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=262.70 Aligned_cols=336 Identities=15% Similarity=0.193 Sum_probs=250.6
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCC----C---CccccCHHHHHHHHH-------------
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSN----P---GAHEQNVRKIVSTLH------------- 63 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~----~---g~~e~d~~~~~~~~~------------- 63 (547)
..+||+|++|+.+|++++|.+.++ +.++.+.+...+|.+.... . ...++..-+|++++.
T Consensus 9 ~~fLG~DlSTQqlKaviids~LnV-v~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~~~~~d~ 87 (545)
T KOG2531|consen 9 RSFLGFDLSTQQLKAVIIDSNLNV-VHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLREAGFDL 87 (545)
T ss_pred ceeeeeecccceeEEEEEcCCccE-EEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHHHcCCCH
Confidence 358999999999999999999998 9999999998888763321 1 223444557777421
Q ss_pred ----------------------------------------H------HHhhCCchhhhhhceeccC--------------
Q psy224 64 ----------------------------------------N------CILRLPKDHLKQVKHIEST-------------- 83 (547)
Q Consensus 64 ----------------------------------------~------~i~~~d~r~~~~~~~i~~~-------------- 83 (547)
. +-.|+|+.+..+|+++...
T Consensus 88 ~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSR 167 (545)
T KOG2531|consen 88 SKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSR 167 (545)
T ss_pred HHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcch
Confidence 1 1257888877777766421
Q ss_pred -------------------------CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCC
Q psy224 84 -------------------------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHL 138 (547)
Q Consensus 84 -------------------------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~ 138 (547)
..-.+++|++.+|-|. ...+|+|++|+|.|+|++++.|+.++|++..+++ +++
T Consensus 168 Ay~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~-~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apdL-~~K 245 (545)
T KOG2531|consen 168 AYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGS-YAPIDESDGSGMNLLDIRKKKWSKALLDACAPDL-EEK 245 (545)
T ss_pred hhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhcc-ccceecccccCchHHHHhhhhhhHHHHhhhChhH-HHH
Confidence 1347899999999992 5569999999999999999999999999986555 567
Q ss_pred CCCcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhcccccCCCcEEEeccchhhhhhcc------cccc----
Q psy224 139 LPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDE------MGAS---- 205 (547)
Q Consensus 139 Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~------~~~~---- 205 (547)
|.+++++..++|+|+.++ +|++++|.|++-.||++++..|.-..++++.+|+|||..+.+.++ .++.
T Consensus 246 L~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~~~~p~~egHvf~hP 325 (545)
T KOG2531|consen 246 LGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTKEYHPSPEGHVFCHP 325 (545)
T ss_pred hCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccccCCceEEEecCcceEEEEcCCCCCCCCcceeccC
Confidence 889999999999999998 999999999999999999999998889999999999999876643 1111
Q ss_pred --cccchhH--HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCceE------
Q psy224 206 --MNGGNCL--ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASV------ 275 (547)
Q Consensus 206 --~~gg~~~--~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~------ 275 (547)
.+....+ .-|++++++-+|+..-. ..++-++++++. -+.++++-+-+-|-.+|-.|....|..
T Consensus 326 ~~~~~YM~mlCfkNgSL~RE~ir~~~~~-~sWd~Fne~L~~------t~~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~ 398 (545)
T KOG2531|consen 326 TDPNHYMGMLCFKNGSLTRERIRNESAN-GSWDKFNEILDS------TPSGNNGNLGVYFPEREIVPSVPKGTLRFIFEN 398 (545)
T ss_pred CCccceEEEEEecCChHHHHHHhhcccC-CCHHHHHHHhcc------CcCCCCCceeEecccccccCCCCccceEEEecC
Confidence 1110011 24566777999986433 345666666543 344666554332334555664333311
Q ss_pred -------EecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 276 -------THITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 276 -------~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
.++-... ++++-+||++||..+..|...+.|.+......+|+++||+ ++|+.+.|++||+++.||...+.+
T Consensus 399 ~~~~~~~~~v~kf~-~p~~e~rAlvEgQ~L~~r~~~~~lg~~~~~~~rilvtGGA-S~N~~Ilq~iadVf~apVy~~~~~ 476 (545)
T KOG2531|consen 399 KELSAERIEVAKFS-DPEIEARALVEGQFLSKRARAEPLGFKSNPPTRILVTGGA-SRNEAILQIIADVFGAPVYTIEGP 476 (545)
T ss_pred CccchhhcccccCC-CchHHHHHHHHHhHhHhhhhhccccCCCCCCceEEEecCc-cccHHHHHHHHHHhCCCeEeecCC
Confidence 1222322 5899999999999999999988654444457899999998 999999999999999999998765
Q ss_pred hhh
Q psy224 349 AMR 351 (547)
Q Consensus 349 ~~~ 351 (547)
+..
T Consensus 477 ~sa 479 (545)
T KOG2531|consen 477 NSA 479 (545)
T ss_pred chh
Confidence 543
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=236.71 Aligned_cols=171 Identities=67% Similarity=1.169 Sum_probs=150.7
Q ss_pred cCCCCCCeeeccccCC--ceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 357 LEKPAPEFEGQAVVNG--QFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G--~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
+|+++|+|++++ .+| +++.+++++++||++||+|||++|||+|+.+++.|++++++|++.|+++++||.|+.+..++
T Consensus 1 vG~~aP~f~~~~-~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATA-VVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeec-ccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 588999999998 554 33589999999999999999999999999999999999999999999999999999877777
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.+...+.....+++||+++|++.++++.||+.....+...|++||||++|+|++.+++..+..++.+++++.|+.++.+
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~ 159 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFV 159 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhh
Confidence 87754321111278999999999999999999866556678999999999999999988877788999999999999999
Q ss_pred hhcCccccCCccCC
Q psy224 515 AEHGEVCPAGWKPG 528 (547)
Q Consensus 515 ~~~~~~~~~~w~~~ 528 (547)
.++++.||.+|++|
T Consensus 160 ~~~~~~~~~~~~~~ 173 (173)
T cd03015 160 EEHGEVCPANWKPG 173 (173)
T ss_pred hhcCCCcCCCCCCC
Confidence 99999999999986
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=258.92 Aligned_cols=164 Identities=30% Similarity=0.514 Sum_probs=141.1
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC------------------- 65 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~------------------- 65 (547)
|+||||+||||+|++|+|.+|++ ++..+.+++... +.+|+.||||++||+.+..+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~i-v~~~~~~~~~~~-----~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~ 74 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKI-VASASRPYPYYT-----PEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIG 74 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCE-EEEEEEEETEBC-----SSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCCE-EEEEEEeeeecc-----ccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEE
Confidence 78999999999999999999998 899988887644 46799999999999965544
Q ss_pred ---------------------HhhCCchhhhhhceeccC--------------------------------------CCc
Q psy224 66 ---------------------ILRLPKDHLKQVKHIEST--------------------------------------NDL 86 (547)
Q Consensus 66 ---------------------i~~~d~r~~~~~~~i~~~--------------------------------------~~l 86 (547)
|.|.|.|+.++++.+... .++
T Consensus 75 is~~~~~~v~~D~~~~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~ 154 (245)
T PF00370_consen 75 ISGQGHGLVLLDKDGKPLRPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAAKFL 154 (245)
T ss_dssp EEE-SSEEEEEETTSSBSSCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHHEEE
T ss_pred eccccCCcceeccccccccccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCchhhhhhhhcc
Confidence 577888877666655321 158
Q ss_pred chhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCC
Q psy224 87 SFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDT 163 (547)
Q Consensus 87 ~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~ 163 (547)
+++|||.|+||| +.++|+|+||+||+||+++++|++++++.+ ++++++||+++++|+++|++++++ +||++|+
T Consensus 155 ~~~dyl~~~LtG--~~~~d~s~as~tgl~d~~~~~w~~~~l~~~--gi~~~~lP~i~~~g~~~G~~~~~~a~~~Gl~~~~ 230 (245)
T PF00370_consen 155 TLSDYLAYKLTG--RAATDYSNASRTGLYDIRTGQWDEELLEAL--GIPEELLPEIVPPGEIIGTLTPEAAKELGLPEGT 230 (245)
T ss_dssp EHHHHHHHHHHS--C-EEEHHHHCTSSSEETTTTEE-HHHHHHT--TSGGGGSCEEE-TTSEEEEEEHHHHHHHTSTTTE
T ss_pred cHHHHHHhhccc--cccccccchhccccccccccccCHHHHHhh--CCChhhCCcEecCCCeeEEECHHHHHHhCCCCCC
Confidence 999999999999 999999999999999999999999999999 599999999999999999999997 9999999
Q ss_pred eEEecCCchhhhhhc
Q psy224 164 PINVALGDLQCSVLA 178 (547)
Q Consensus 164 ~V~~g~~D~~aa~~g 178 (547)
||++|+||++|+++|
T Consensus 231 pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 231 PVIAGGGDQAAAALG 245 (245)
T ss_dssp EEEEEEEHHHHHHHH
T ss_pred EEEEEchHHHHhhcC
Confidence 999999999999987
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X .... |
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=213.90 Aligned_cols=146 Identities=34% Similarity=0.544 Sum_probs=134.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+|++ .+| +.++|++++||++||+|||..++|+|+.|+..++..+++|++.|++|+|||.|++..+++|
T Consensus 5 ~~G~~aPdF~Lp~-~~g--~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 5 KVGDKAPDFELPD-QDG--ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred CCCCcCCCeEeec-CCC--CEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 4899999999999 888 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC------cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG------IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g------~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+++ +++||+|+|++.+++++||+..++.. ...|++||||++|+|++.| .......+.+++++.|+
T Consensus 82 ~~k~-------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~ 153 (157)
T COG1225 82 AEKH-------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAALK 153 (157)
T ss_pred HHHh-------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHHHH
Confidence 9988 99999999999999999999886541 2469999999999999999 45556668999999998
Q ss_pred hhH
Q psy224 510 AFQ 512 (547)
Q Consensus 510 ~l~ 512 (547)
++.
T Consensus 154 ~l~ 156 (157)
T COG1225 154 KLA 156 (157)
T ss_pred Hhc
Confidence 765
|
|
| >KOG0854|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=199.73 Aligned_cols=184 Identities=33% Similarity=0.569 Sum_probs=167.4
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
+|+.+|+|+..+ ..| .+++-||.| -|.||+-.|+.++|+|++|+-++++++.+|.++|+..|++|+|+.++++.|
T Consensus 8 lgd~~PNfea~T-t~g---~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~W 83 (224)
T KOG0854|consen 8 LGDTVPNFEADT-TVG---KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKDW 83 (224)
T ss_pred ccCcCCCccccc-ccc---ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHHH
Confidence 899999999988 778 799999976 599999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCC--cceeeecCCChHHHHHhCCcccCC------CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy224 436 CNIPRNKGGLGD--MAIPILSDKSMSIARSYGVLNEET------GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 436 ~~~~~~~~~~~~--~~fp~l~D~~~~~~~~~~v~~~~~------g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~ 507 (547)
.++.+.|..... ++||++.|++.+++-.|++..... +...++.||||++-+|+.++.++.+.+|+++|+|+.
T Consensus 84 i~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLRv 163 (224)
T KOG0854|consen 84 IKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILRV 163 (224)
T ss_pred HHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHHHH
Confidence 998866655444 999999999999999999885432 455789999999999999999999999999999999
Q ss_pred HHhhHhhhhcCccccCCccCCCccccc-C--ccchhcccc
Q psy224 508 VQAFQFVAEHGEVCPAGWKPGSKTMKA-D--PSGSQEYFK 544 (547)
Q Consensus 508 l~~l~~~~~~~~~~~~~w~~~~~~~~~-~--~~~~~~~~~ 544 (547)
+..||.++++++.+|.||+++++||.. . .||.+..|+
T Consensus 164 idsLqlt~~k~VaTP~nWkpg~~vmilPtV~~eeakklFp 203 (224)
T KOG0854|consen 164 IDSLQLTDKKGVATPVNWKPGDKVMILPTVSDEEAKKLFP 203 (224)
T ss_pred HHHHhhhcccccccccccCCCCceEEcCcCChHHHHHhcc
Confidence 999999999999999999999999987 3 377777777
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=188.34 Aligned_cols=143 Identities=34% Similarity=0.598 Sum_probs=127.6
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
+|+.+|+|++.+ .+| +.+++++++| |++||+||+++|||.|+.+++.|++++++|+++|+++++||.|+++.+++|
T Consensus 3 ~G~~~p~~~l~~-~~g--~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 79 (149)
T cd03018 3 VGDKAPDFELPD-QNG--QEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAW 79 (149)
T ss_pred CCCcCCCcEecC-CCC--CEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHH
Confidence 789999999999 888 6999999999 999999999999999999999999999999999999999999999899999
Q ss_pred hhccccCCCCCCcceeeecCCC--hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKS--MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~--~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+++ +++||+++|.+ .++++.|++.....+...|++||||++|+|++.+.++....++..++.+.|+
T Consensus 80 ~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 80 AEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred HHhc-------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 9876 89999999987 9999999998644345567999999999999999888755666677777664
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=188.68 Aligned_cols=142 Identities=26% Similarity=0.447 Sum_probs=123.1
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|++.+ .+| +.+++++++||++||+|||+.|||+|+.+++.|++++++|. +++|++||.|++..+++|
T Consensus 19 ~~G~~~P~f~l~~-~~g--~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f 93 (167)
T PRK00522 19 QVGDKAPDFTLVA-NDL--SDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRF 93 (167)
T ss_pred CCCCCCCCeEEEc-CCC--cEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHH
Confidence 4899999999999 888 68999999999999999955559999999999999999983 899999999999889999
Q ss_pred hhccccCCCCCCcc-eeeecC-CChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecC-CCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMA-IPILSD-KSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITIND-LPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~-fp~l~D-~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~-~~~~~~~~~il~~l~ 509 (547)
.+++ +++ |++++| ++.++++.||+.... .|...|++||||++|+|++.+++. .....+++++++.|+
T Consensus 94 ~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 94 CGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred HHhC-------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 9876 776 799999 456999999997543 456678999999999999999754 455568999998876
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-23 Score=182.25 Aligned_cols=137 Identities=33% Similarity=0.469 Sum_probs=121.2
Q ss_pred CCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhc
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNI 438 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 438 (547)
+++|+|++++ .+| +.+++++++||++||+||+++|||.|+.+++.|++++++|+++++++++|+.|+++...+|.++
T Consensus 1 ~~~p~f~l~~-~~g--~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 1 DKAPDFTLPD-QDG--ETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCCccccC-CCC--CEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 3689999999 888 6999999999999999998899999999999999999999999999999999999999999987
Q ss_pred cccCCCCCCcceeeecCCChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 439 PRNKGGLGDMAIPILSDKSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 439 ~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
+ +++||+++|++.++++.||+.... .+...|++||||++|+|++.+.+.. ..++++++++
T Consensus 78 ~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~~~ 140 (140)
T cd03017 78 Y-------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEVLE 140 (140)
T ss_pred h-------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC-ccchHHHHhC
Confidence 6 889999999999999999988531 1223499999999999999997666 6667887763
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=181.07 Aligned_cols=138 Identities=25% Similarity=0.451 Sum_probs=120.0
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
+|+.+|+|++++ .+| +.+++++++||++||+||++.|||+|+.+++.|++++++|+ |+.+++||.|..+.+++|.
T Consensus 2 ~G~~aP~f~l~~-~~g--~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVT-SDL--SEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEEC-CCC--cEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHH
Confidence 689999999999 888 59999999999999999966668999999999999999984 8999999999988889998
Q ss_pred hccccCCCCCCc-ceeeecCCC-hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC-CCCCCHHHHHH
Q psy224 437 NIPRNKGGLGDM-AIPILSDKS-MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL-PVGRSVDETLR 506 (547)
Q Consensus 437 ~~~~~~~~~~~~-~fp~l~D~~-~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~~~il~ 506 (547)
+++ +. +||+++|.. .+++++||+..+..+...|++||||++|+|++.+++.. ....+++++++
T Consensus 77 ~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 77 GAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred Hhc-------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 876 54 799999986 99999999987655666799999999999999998654 34456777664
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=184.03 Aligned_cols=144 Identities=24% Similarity=0.389 Sum_probs=125.1
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|++.+ .+| +.+++++++||++||+||++.|||.|+.+++.|.+++++|+++|+++|+|+.|++++..+|
T Consensus 5 ~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~ 81 (154)
T PRK09437 5 KAGDIAPKFSLPD-QDG--EQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRF 81 (154)
T ss_pred CCCCcCCCcEeeC-CCC--CEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 3899999999999 888 5899999999999999997789999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCC--C----cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--G----IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--g----~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+++ +++||+++|+++.++++||+..... + ...|++||||++|+|++.+.+..+ .+..++++++++
T Consensus 82 ~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~-~~~~~~~~~~~~ 153 (154)
T PRK09437 82 AEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKT-SNHHDVVLDYLK 153 (154)
T ss_pred HHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCc-chhHHHHHHHHh
Confidence 9876 8899999999999999999875321 1 113789999999999999966544 446788888776
Q ss_pred h
Q psy224 510 A 510 (547)
Q Consensus 510 ~ 510 (547)
+
T Consensus 154 ~ 154 (154)
T PRK09437 154 E 154 (154)
T ss_pred C
Confidence 3
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-23 Score=178.34 Aligned_cols=124 Identities=28% Similarity=0.513 Sum_probs=114.6
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
+|+++|+|++++ .+| +.+++++++||++||+||+.+|||.|..+++.|++++++|+++|+++++|+.|+.+.+++|.
T Consensus 1 vG~~~P~f~l~~-~~g--~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTD-SDG--KTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEET-TTS--EEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred CcCCCCCcEeEC-CCC--CEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence 689999999999 888 69999999999999999966699999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEE
Q psy224 437 NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
+++ +++||+++|++.++.+.|++.........|++||||++|+|++.
T Consensus 78 ~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEY-------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHH-------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhh-------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 987 89999999999999999999865444458999999999999974
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-22 Score=177.64 Aligned_cols=131 Identities=24% Similarity=0.402 Sum_probs=115.4
Q ss_pred cCCCCCCeeeccccC-CceeeEeccC-CCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHhhCCc-EEEEEeCCChhhH
Q psy224 357 LEKPAPEFEGQAVVN-GQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCPTE-IIAFSDRAEEFKKINT-QVIACSTDSHFSH 432 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~-G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~-~vi~is~d~~~~~ 432 (547)
+|+++|+|++++ .+ |+++.+++++ ++||++||+|||+.|||+|+.| ++.|++.+++|++.|+ +|++||.|+++.+
T Consensus 1 vG~~aPdF~l~~-~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~ 79 (155)
T cd03013 1 VGDKLPNVTLFE-YVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVM 79 (155)
T ss_pred CCCcCCCeEeee-eccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHH
Confidence 589999999998 54 2226899999 5999999999999999999999 9999999999999999 6999999999999
Q ss_pred HHHhhccccCCCCCCc--ceeeecCCChHHHHHhCCcccCC--C---cceeEEEEEcCCCcEEEEEecCCC
Q psy224 433 LAWCNIPRNKGGLGDM--AIPILSDKSMSIARSYGVLNEET--G---IPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~--~fp~l~D~~~~~~~~~~v~~~~~--g---~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
++|.++. ++ +||+++|++.+++++||+..++. + ...|++|||| +|+|++.++...+
T Consensus 80 ~~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 80 KAWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred HHHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 9999986 65 89999999999999999986543 2 2479999999 7999999976654
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-22 Score=177.65 Aligned_cols=130 Identities=25% Similarity=0.416 Sum_probs=112.2
Q ss_pred cCCCCCCeeecc-ccCCceeeEeccCCCCCeEEEEEEeCC-CCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 357 LEKPAPEFEGQA-VVNGQFKNIKLSQYKGQYVVLFFYPLD-FTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~-~~~G~~~~~~l~~~~gk~~ll~f~~~~-~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
+|+++|+|++++ ..+| +++++++++||++||+|| ++ |||+|..++|.+.+++++|+++++++++|+.+......+
T Consensus 2 ~G~~~P~~~~~~~~~~g--~~~~l~~~~gk~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDG--KPVSLSDFKGKPVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp TTSB--CCEEEEEETTS--EEEEGGGGTTSEEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCeEEEeecCCC--CEecHHHhCCCeEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 689999999953 1667 799999999999999999 77 999999999999999999999999999999987766888
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
|.+++ +.+||++.|++.+++++|++.... .+..+|+++|||++|+|++.+.+..+
T Consensus 79 ~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 79 FLKKY-------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHT-------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHhh-------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 88875 899999999999999999976211 12358999999999999999987776
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-21 Score=170.15 Aligned_cols=134 Identities=46% Similarity=0.802 Sum_probs=116.9
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
.+|+|++.+ .+| +++++++++||++||+||+++|||+|..+++.|++++++|++.++++++|+.|+++..++|.+++
T Consensus 1 ~~p~f~l~~-~~g--~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPA-TDG--GEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCceecc-CCC--cEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 369999999 888 59999999999999999999999999999999999999999889999999999988888888764
Q ss_pred ccCCCCCCcceeeecCCChHHHHHhCCcccCC---CcceeEEEEEcCCCcEEEEEecCCCCCCCHH
Q psy224 440 RNKGGLGDMAIPILSDKSMSIARSYGVLNEET---GIPYRGLFIIDDKQNLRQITINDLPVGRSVD 502 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~---g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~ 502 (547)
. +.+||++.|+++.+++.||+..... +...|++||||++|+|++.+.+..+.....+
T Consensus 78 ~------~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~ 137 (140)
T cd02971 78 G------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAE 137 (140)
T ss_pred c------CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChH
Confidence 2 6789999999999999999885432 3346899999999999999988776443333
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-21 Score=175.41 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=124.6
Q ss_pred CCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------
Q psy224 358 EKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-------- 428 (547)
Q Consensus 358 g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-------- 428 (547)
|+.+|+|++.+ .+| +.++++++ ++|++||+|| ++|||.|..+++.|.+++++|+++++++++|+.|+
T Consensus 1 g~~~p~f~l~~-~~g--~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~ 76 (171)
T cd02969 1 GSPAPDFSLPD-TDG--KTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS 76 (171)
T ss_pred CCcCCCccccC-CCC--CEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence 57899999999 888 58999998 8999999999 99999999999999999999998899999999875
Q ss_pred hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC-----CCCCHHH
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP-----VGRSVDE 503 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~-----~~~~~~~ 503 (547)
++..++|.+++ +++||++.|++..+.+.|++. ..|++||||++|+|++....... .....++
T Consensus 77 ~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 77 PENMKAKAKEH-------GYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHHHHHHHHC-------CCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 45566666654 889999999999999999997 47999999999999988632211 1124566
Q ss_pred HHHHHHhhH------hhhhcCccccCCc
Q psy224 504 TLRLVQAFQ------FVAEHGEVCPAGW 525 (547)
Q Consensus 504 il~~l~~l~------~~~~~~~~~~~~w 525 (547)
+.++|+++. .....+.+|+++|
T Consensus 144 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 144 LRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred HHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 777776644 3344588999998
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=178.31 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=119.3
Q ss_pred cEEEeccchhhhhhccc------ccc-------cccchhH---HHHHhHHHHHHHHhCCC-----Cchh--HHHHHHHhc
Q psy224 186 AIVNISTSAQIAFIDEM------GAS-------MNGGNCL---ATFVCTLQNWFKEFGFN-----VPQN--QIWAKLINA 242 (547)
Q Consensus 186 ~~is~GTs~~~~~~~~~------~~~-------~~gg~~~---~~~~g~~~~w~~~~~~~-----~~~~--~~~~~~~~~ 242 (547)
+++|+|||+++.++++. +.. ..+.+.+ ...+|.+++|+++.+.. .... +.++....
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEA- 79 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHH-
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHh-
Confidence 47899999999766321 100 0111221 24567778999998521 1111 22222111
Q ss_pred cCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhc-C--CcE
Q psy224 243 SDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRS-G--INR 316 (547)
Q Consensus 243 ~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~-g--~~~ 316 (547)
...++++++++|+|++.|+|.|.+++ ++|.|++.++ ++.+++||++||++|.+|++++ .+++. + +++
T Consensus 80 ----~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~-~~~~~~rAv~Egia~~~~~~~~--~l~~~~~~~~~~ 152 (198)
T PF02782_consen 80 ----AASPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDT-TRADLARAVLEGIAFSLRQILE--ELEELTGIPIRR 152 (198)
T ss_dssp ----HHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTT-SHHHHHHHHHHHHHHHHHHHHH--HHHHHHTSCESE
T ss_pred ----hhccCcccceeeeeccccCcccccccccccccccCCccc-CHHHHHHHHHHhHHHHHHHhhh--hcccccccccee
Confidence 12346778999999999999999886 7999999987 8999999999999999999999 47664 4 789
Q ss_pred EEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhh
Q psy224 317 IIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDAS 354 (547)
Q Consensus 317 I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~ 354 (547)
|+++||+ +||+.|+|++||++++||.+....+..+.+
T Consensus 153 i~~~GG~-~~n~~~~q~~Advl~~~V~~~~~~e~~a~G 189 (198)
T PF02782_consen 153 IRVSGGG-AKNPLWMQILADVLGRPVVRPEVEEASALG 189 (198)
T ss_dssp EEEESGG-GGSHHHHHHHHHHHTSEEEEESSSTHHHHH
T ss_pred eEecccc-ccChHHHHHHHHHhCCceEeCCCCchHHHH
Confidence 9999998 999999999999999999999876655433
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=168.02 Aligned_cols=124 Identities=21% Similarity=0.320 Sum_probs=108.4
Q ss_pred CCCCeeeccccCCceeeEeccCCC-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYK-GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNI 438 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~-gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 438 (547)
.+|+|++++ .+| +.+++++++ +|++||+||+++|||+|..+++.|++++++|+++|+++++|+.|..+...+|.++
T Consensus 1 ~~p~f~l~~-~~g--~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELPD-AGG--ETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCccccC-CCC--CEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 378999999 888 589999985 5788888888999999999999999999999999999999999988777778776
Q ss_pred cccCCCCCCcceeeecCCChHHHHHhCCcccC-----------------------CCcceeEEEEEcCCCcEEEEEec
Q psy224 439 PRNKGGLGDMAIPILSDKSMSIARSYGVLNEE-----------------------TGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 439 ~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~-----------------------~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
. +++||+++|++.++.+.||+.... .+...|++||||++|+|++.+++
T Consensus 78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 5 899999999999999999985322 12458999999999999999864
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-20 Score=176.52 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=110.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
..|+.+|+|++++ .+| +.+++++++||++||+|| ++|||+|..++|.|++++++|+++|++|++|++|
T Consensus 74 ~~g~~aPdF~l~d-~~G--~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 74 ATEKSVHDFTVKD-IDG--KDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 149 (236)
T ss_pred hcCCCCCceEEEC-CCC--CEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCC
Confidence 3788999999999 899 699999999999999999 9999999999999999999999999999999974
Q ss_pred ChhhHHHHh-hccccCCCCCCcceeeecC--CCh-HHHHHhCCcccC-------CCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 428 SHFSHLAWC-NIPRNKGGLGDMAIPILSD--KSM-SIARSYGVLNEE-------TGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 428 ~~~~~~~~~-~~~~~~~~~~~~~fp~l~D--~~~-~~~~~~~v~~~~-------~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+.++..+|. +++ +++||++.| .++ .+++.|++.... .-...|++||||++|+|++.+.+..+
T Consensus 150 s~~ei~~f~~~~~-------g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~ 222 (236)
T PLN02399 150 SNPEIKQFACTRF-------KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTS 222 (236)
T ss_pred CHHHHHHHHHHhc-------CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCC
Confidence 334566765 344 899999864 333 555666532110 01236999999999999999976653
Q ss_pred CCCCHHHHHHHHHhh
Q psy224 497 VGRSVDETLRLVQAF 511 (547)
Q Consensus 497 ~~~~~~~il~~l~~l 511 (547)
.+++.+.|+++
T Consensus 223 ----~~~le~~I~~l 233 (236)
T PLN02399 223 ----PFQIEKDIQKL 233 (236)
T ss_pred ----HHHHHHHHHHH
Confidence 34555555544
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=163.56 Aligned_cols=111 Identities=21% Similarity=0.344 Sum_probs=98.7
Q ss_pred ccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC------CChhhHHHHhhccccC
Q psy224 369 VVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST------DSHFSHLAWCNIPRNK 442 (547)
Q Consensus 369 ~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~------d~~~~~~~~~~~~~~~ 442 (547)
|.+++ +++++++++||++||+|| ++|||+|..++|.|++++++|+++++++++|+. ++.++.++|.+++
T Consensus 9 w~~~~-~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~--- 83 (126)
T cd03012 9 WLNTD-KPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY--- 83 (126)
T ss_pred hhcCC-CccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc---
Confidence 34442 589999999999999999 999999999999999999999999999999986 3456777778776
Q ss_pred CCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 443 GGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 443 ~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+++||++.|++.++++.|++. .+|++||||++|+|++++.|+
T Consensus 84 ----~~~~p~~~D~~~~~~~~~~v~------~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 84 ----GITYPVANDNDYATWRAYGNQ------YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred ----CCCCCEEECCchHHHHHhCCC------cCCeEEEECCCCcEEEEEecC
Confidence 899999999999999999987 489999999999999999764
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-20 Score=170.83 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=107.1
Q ss_pred CCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hh
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HF 430 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~ 430 (547)
..+|+|++++ .+| +.+++++++||++||+|| ++|||+|..++|.|++++++|+++|++|++|+.|+ .+
T Consensus 7 ~~~pdf~l~d-~~G--~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTVKD-IGG--NDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEEEC-CCC--CEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 5789999999 899 689999999999999999 99999999999999999999999999999999753 22
Q ss_pred hH-HHHhhccccCCCCCCcceeeecC--CC-hHHHHHhCCcccCC-------CcceeEEEEEcCCCcEEEEEecCCCCCC
Q psy224 431 SH-LAWCNIPRNKGGLGDMAIPILSD--KS-MSIARSYGVLNEET-------GIPYRGLFIIDDKQNLRQITINDLPVGR 499 (547)
Q Consensus 431 ~~-~~~~~~~~~~~~~~~~~fp~l~D--~~-~~~~~~~~v~~~~~-------g~~~p~~~lid~~G~v~~~~~~~~~~~~ 499 (547)
.. +.|.+++ +++||++.| .+ ....+.|++...+. -...|++||||++|+|++++.+..+.
T Consensus 83 ~~~~~~~~~~-------~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~-- 153 (167)
T PLN02412 83 EIQQTVCTRF-------KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSP-- 153 (167)
T ss_pred HHHHHHHHcc-------CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCH--
Confidence 33 3334554 899999874 44 36667776432110 11368999999999999999777643
Q ss_pred CHHHHHHHHHhh
Q psy224 500 SVDETLRLVQAF 511 (547)
Q Consensus 500 ~~~~il~~l~~l 511 (547)
+++.+.++++
T Consensus 154 --~~l~~~i~~~ 163 (167)
T PLN02412 154 --LKIEKDIQNL 163 (167)
T ss_pred --HHHHHHHHHH
Confidence 3444444443
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=173.25 Aligned_cols=129 Identities=9% Similarity=0.096 Sum_probs=102.4
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--------CC
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--------DS 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--------d~ 428 (547)
.+..+|+|++++ .+| +.+++++++||++||+|| ++|||+|..++|.|++++++|+++|++|++|++ ++
T Consensus 15 ~~~~~pdf~l~d-~~G--~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~ 90 (199)
T PTZ00056 15 LRKSIYDYTVKT-LEG--TTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPN 90 (199)
T ss_pred cCCCCCceEEEC-CCC--CEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCC
Confidence 678899999999 889 699999999999999999 999999999999999999999999999999996 34
Q ss_pred hhhHHHHhhccccCCCCCCcceeeecCC------ChHHHHH--------hCCcccCCCc-ceeEEEEEcCCCcEEEEEec
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILSDK------SMSIARS--------YGVLNEETGI-PYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~D~------~~~~~~~--------~~v~~~~~g~-~~p~~~lid~~G~v~~~~~~ 493 (547)
+++.++|.+++ +++||+++|. ...+.+. |+........ ..|++||||++|+|++.+.+
T Consensus 91 ~e~~~~f~~~~-------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g 163 (199)
T PTZ00056 91 TKDIRKFNDKN-------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSP 163 (199)
T ss_pred HHHHHHHHHHc-------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCC
Confidence 56778888766 8999998762 2233222 2221110011 12589999999999999966
Q ss_pred CCC
Q psy224 494 DLP 496 (547)
Q Consensus 494 ~~~ 496 (547)
..+
T Consensus 164 ~~~ 166 (199)
T PTZ00056 164 RTE 166 (199)
T ss_pred CCC
Confidence 554
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=168.61 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=102.9
Q ss_pred CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--------CChhhHH
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--------DSHFSHL 433 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--------d~~~~~~ 433 (547)
-+|++++ .+| +.+++++++||++||+|| ++|||+|..++|.|++++++|+++|++|++|++ |+.+.++
T Consensus 3 ~~f~l~~-~~G--~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 3 YSFEVKD-ARG--RTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred ccceeEC-CCC--CEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence 4789998 889 699999999999999999 999999999999999999999999999999995 4567778
Q ss_pred HHhhc-cccCCCCCCcceeeecCC---ChHHHHHhCCcccCCCcceeE----EEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy224 434 AWCNI-PRNKGGLGDMAIPILSDK---SMSIARSYGVLNEETGIPYRG----LFIIDDKQNLRQITINDLPVGRSVDETL 505 (547)
Q Consensus 434 ~~~~~-~~~~~~~~~~~fp~l~D~---~~~~~~~~~v~~~~~g~~~p~----~~lid~~G~v~~~~~~~~~~~~~~~~il 505 (547)
+|.++ + +++||+++|. +......|+......+ ..|+ +||||++|+|++.+.++.+ .+++.
T Consensus 79 ~f~~~~~-------~~~fp~~~d~~~~~~~~~~~~~~~~~~~~-~~p~~~~~tflID~~G~v~~~~~g~~~----~~~l~ 146 (153)
T TIGR02540 79 SFARRNY-------GVTFPMFSKIKILGSEAEPAFRFLVDSSK-KEPRWNFWKYLVNPEGQVVKFWRPEEP----VEEIR 146 (153)
T ss_pred HHHHHhc-------CCCCCccceEecCCCCCCcHHHHHHhcCC-CCCCCccEEEEEcCCCcEEEEECCCCC----HHHHH
Confidence 88864 4 8999999872 2233333332211111 2455 9999999999999976653 45555
Q ss_pred HHHHh
Q psy224 506 RLVQA 510 (547)
Q Consensus 506 ~~l~~ 510 (547)
+.|++
T Consensus 147 ~~i~~ 151 (153)
T TIGR02540 147 PEITA 151 (153)
T ss_pred HHHHH
Confidence 55554
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=169.57 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=99.5
Q ss_pred CCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hhhH
Q psy224 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HFSH 432 (547)
Q Consensus 361 ~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~~~ 432 (547)
+|+|++++ .+| +.+++++++||++||+|| ++||| |..++|.|++++++|+++|++|++|+.++ ++.+
T Consensus 2 ~~~f~l~d-~~G--~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSVKD-IDG--EPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEEEC-CCC--CEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 68999999 899 699999999999999999 99999 99999999999999999999999998743 4667
Q ss_pred HHHhhc-cccCCCCCCcceeeecCC--ChH-HHHHhCCcccCC-------CcceeEEEEEcCCCcEEEEEecCCC
Q psy224 433 LAWCNI-PRNKGGLGDMAIPILSDK--SMS-IARSYGVLNEET-------GIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 433 ~~~~~~-~~~~~~~~~~~fp~l~D~--~~~-~~~~~~v~~~~~-------g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
++|.++ + +++||++.|. +.. ..+.|++..... ....|++||||++|+|++.+.|..+
T Consensus 77 ~~f~~~~~-------~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~ 144 (152)
T cd00340 77 KEFCETNY-------GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTD 144 (152)
T ss_pred HHHHHHhc-------CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCC
Confidence 788875 4 8899999864 222 455565321100 0013489999999999999987764
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-20 Score=170.16 Aligned_cols=124 Identities=17% Similarity=0.246 Sum_probs=105.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-ChhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~~~ 433 (547)
.+|+++|+|++++ .+|+++.++++++ +||++||+|| ++|||+|+.++|.|.+++ +++++|++|+.+ +.++..
T Consensus 40 ~~g~~~p~f~l~~-~~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~~ 113 (185)
T PRK15412 40 LIGKPVPKFRLES-LENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAI 113 (185)
T ss_pred hcCCCCCCcCCcc-CCCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHHH
Confidence 3799999999999 7753356777766 7999999999 999999999999998765 358999999975 456778
Q ss_pred HHhhccccCCCCCCcceee-ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC
Q psy224 434 AWCNIPRNKGGLGDMAIPI-LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG 498 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~-l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~ 498 (547)
+|.+++ +++||+ +.|++.++.+.|++. ..|++||||++|+|++++.|+.+..
T Consensus 114 ~~~~~~-------~~~~~~~~~D~~~~~~~~~gv~------~~P~t~vid~~G~i~~~~~G~~~~~ 166 (185)
T PRK15412 114 SWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDLNPR 166 (185)
T ss_pred HHHHHc-------CCCCceEEEcCCccHHHhcCCC------cCCeEEEECCCceEEEEEecCCCHH
Confidence 888876 889984 789999999999988 5899999999999999998877544
|
|
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=168.53 Aligned_cols=131 Identities=13% Similarity=0.192 Sum_probs=97.6
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEE-EEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-------
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVV-LFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------- 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~l-l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------- 428 (547)
.++.+|+|++++ .+| +.+++++++||++| +++| ++|||+|..++|.|++++++|+++|++|++|++|+
T Consensus 16 ~~~~~p~f~l~d-~~G--~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 16 PTKSFFEFEAID-IDG--QLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPW 91 (183)
T ss_pred CCCcccceEeEc-CCC--CEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCC
Confidence 456789999999 889 69999999999654 5567 99999999999999999999999999999999753
Q ss_pred -hhhHHHHhh-ccccCCCCCCcceeeecC--CChHH-HHHhCCcccCC---------Cccee---EEEEEcCCCcEEEEE
Q psy224 429 -HFSHLAWCN-IPRNKGGLGDMAIPILSD--KSMSI-ARSYGVLNEET---------GIPYR---GLFIIDDKQNLRQIT 491 (547)
Q Consensus 429 -~~~~~~~~~-~~~~~~~~~~~~fp~l~D--~~~~~-~~~~~v~~~~~---------g~~~p---~~~lid~~G~v~~~~ 491 (547)
.++..+|.. ++ +++||++.| .++.. .+.|+...... ...+| ++||||++|+|++.+
T Consensus 92 ~~~~~~~f~~~~~-------~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 92 DEPEIKEYVQKKF-------NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred CHHHHHHHHHHhc-------CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 244555643 33 899999965 33322 33442111110 11356 579999999999999
Q ss_pred ecCCCCC
Q psy224 492 INDLPVG 498 (547)
Q Consensus 492 ~~~~~~~ 498 (547)
.+..+..
T Consensus 165 ~g~~~~~ 171 (183)
T PTZ00256 165 SPKVNPN 171 (183)
T ss_pred CCCCCHH
Confidence 8766433
|
|
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-19 Score=163.53 Aligned_cols=134 Identities=22% Similarity=0.414 Sum_probs=117.1
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~ 435 (547)
+|..+|+|++.+ .+| +.+++++++||+++|+|| ++|||.|+.+++.|.+++++|++.++++++|+.|. .+..++|
T Consensus 37 ~g~~~p~~~~~~-~~g--~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~ 112 (173)
T PRK03147 37 VGKEAPNFVLTD-LEG--KKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNF 112 (173)
T ss_pred CCCCCCCcEeec-CCC--CEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHH
Confidence 899999999999 888 589999999999999999 99999999999999999999998899999999975 4566788
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+++ +++||++.|.+.++.+.|++. ..|++|+||++|+|++.+.|..+ .+++.+.|+++
T Consensus 113 ~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~~~----~~~l~~~l~~~ 171 (173)
T PRK03147 113 VNRY-------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGEMT----EEQLEEYLEKI 171 (173)
T ss_pred HHHh-------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCCCC----HHHHHHHHHHh
Confidence 8766 889999999999999999997 48999999999999999876664 34444444443
|
|
| >KOG0855|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-19 Score=150.40 Aligned_cols=145 Identities=31% Similarity=0.485 Sum_probs=130.9
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+.+|||+|.| .+| ++|+|.++.| |++|++|||+..+|+|+.|...+..-|++|++.+.+|+++|.|+...+++
T Consensus 64 ~~Gd~iPD~tL~d-edg--~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKa 140 (211)
T KOG0855|consen 64 NKGDAIPDFTLKD-EDG--KSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKA 140 (211)
T ss_pred ecCCcCCCccccc-CCC--CeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHH
Confidence 3899999999999 899 6999999977 59999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccC-CCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE-TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~-~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|..+. +++|.+|+|+..++.+.+|+..+. .|.+.+.+||+|+.|.........+.+..++++.++.|.+
T Consensus 141 F~sKq-------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~ 210 (211)
T KOG0855|consen 141 FASKQ-------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA 210 (211)
T ss_pred hhhhc-------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence 99876 999999999999999999999854 4667899999998887777776677777789998888764
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=163.09 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=107.1
Q ss_pred cCCCCCCeeeccccCCceeeEecc--CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~--~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
+|+++|+|++++ .+| +.++++ +++||++||+|| ++|||+|+.++|.+++++++ .++++++|+.+++++.++
T Consensus 48 vG~~aP~f~l~d-~~G--~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~~~ 120 (189)
T TIGR02661 48 VGDAAPIFNLPD-FDG--EPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEHRR 120 (189)
T ss_pred CCCcCCCcEecC-CCC--CEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHHHH
Confidence 899999999999 899 689994 569999999999 99999999999999998765 378899999888888899
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
|.+++ +++|+.+. .++++.+.|++. ..|++||||++|+|++.. .....+++++++++++
T Consensus 121 ~~~~~-------~~~~~~~~-~~~~i~~~y~v~------~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 121 FLKDH-------ELGGERYV-VSAEIGMAFQVG------KIPYGVLLDQDGKIRAKG--LTNTREHLESLLEADR 179 (189)
T ss_pred HHHhc-------CCCcceee-chhHHHHhccCC------ccceEEEECCCCeEEEcc--CCCCHHHHHHHHHHHH
Confidence 99876 67776544 468899999987 489999999999999864 3333334666665543
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-19 Score=153.42 Aligned_cols=119 Identities=21% Similarity=0.265 Sum_probs=103.5
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC-CChhhHHHHhhc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST-DSHFSHLAWCNI 438 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~-d~~~~~~~~~~~ 438 (547)
++|+|++++ .+|+.+.+++++++||++||+|| ++|||+|..++|.|+++.+++ +++|++|+. +..++.++|.++
T Consensus 2 ~~p~f~~~~-~~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPA-LPGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCccccc-ccCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHh
Confidence 579999999 77743589999999999999999 999999999999999988765 599999996 466777888877
Q ss_pred cccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 439 PRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 439 ~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+ +++|+ ++.|.+.++++.|++. .+|++|+||++|+|++.+.|..+
T Consensus 77 ~-------~~~~~~~~~D~~~~~~~~~~v~------~~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 77 H-------GNPYAAVGFDPDGRVGIDLGVY------GVPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred c-------CCCCceEEECCcchHHHhcCCC------CCCeEEEECCCceEEEEEeccCC
Confidence 5 77886 6689999999999998 48999999999999999987665
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=159.60 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=107.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~ 433 (547)
.+|..+|+|++++ .+|+.+.++++++ +||+++|+|| ++|||+|+.++|.++++++ +++++++|+.+. .++..
T Consensus 35 ~vG~~ap~f~l~~-~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 35 LIGKPVPAFPLAA-LREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQSQNAL 108 (173)
T ss_pred hcCCCCCCccccc-cCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCChHHHH
Confidence 4899999999999 8884335666676 7999999999 9999999999999887654 489999999754 45566
Q ss_pred HHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 434 AWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|.+++ +++|| ++.|+++++.+.|++. ..|++|+||++|+|++.+.|..+ .+++.+.+++
T Consensus 109 ~~~~~~-------~~~f~~v~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~~----~~~l~~~l~~ 169 (173)
T TIGR00385 109 KFLKEL-------GNPYQAILIDPNGKLGLDLGVY------GAPETFLVDGNGVILYRHAGPLN----NEVWTEGFLP 169 (173)
T ss_pred HHHHHc-------CCCCceEEECCCCchHHhcCCe------eCCeEEEEcCCceEEEEEeccCC----HHHHHHHHHH
Confidence 787765 88998 5689999999999997 48999999999999999987664 3444444443
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-18 Score=150.25 Aligned_cols=102 Identities=9% Similarity=0.100 Sum_probs=85.2
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-------CcEEEEEeCCCh-hhHHHHhhccccCCCCCC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-------NTQVIACSTDSH-FSHLAWCNIPRNKGGLGD 447 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-------~~~vi~is~d~~-~~~~~~~~~~~~~~~~~~ 447 (547)
.+++++++||+++|+|| |+|||+|+.++|.|.+++++++++ +++|++||.|.. ++.++|.++. +
T Consensus 17 ~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~-------~ 88 (146)
T cd03008 17 REIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM-------P 88 (146)
T ss_pred cccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------C
Confidence 56889999999999999 999999999999999999988754 699999999854 4466777765 6
Q ss_pred cce---eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 448 MAI---PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 448 ~~f---p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
++| |+..+.+.++++.|++. .+|++||||++|+|+...
T Consensus 89 ~~~~~~p~~~~~~~~l~~~y~v~------~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 89 KKWLFLPFEDEFRRELEAQFSVE------ELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCceeecccchHHHHHHHHcCCC------CCCEEEEECCCCcEEeeC
Confidence 555 33333346899999997 589999999999999775
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=149.16 Aligned_cols=121 Identities=20% Similarity=0.323 Sum_probs=102.8
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhhCC---cEEEEEeCCC----hhh
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKKIN---TQVIACSTDS----HFS 431 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~~---~~vi~is~d~----~~~ 431 (547)
++|+|++.+ .+| +.+++++++||++||+|| ++||+. |..+++.|++++++|++++ +++++|+.|+ ++.
T Consensus 1 ~~p~f~l~~-~~g--~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTD-QDG--RPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEEEc-CCC--CEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 478999999 888 689999999999999999 999997 9999999999999998865 9999999865 466
Q ss_pred HHHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCcccCCC-------c-ceeEEEEEcCCCcEEEEE
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNEETG-------I-PYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~~~g-------~-~~p~~~lid~~G~v~~~~ 491 (547)
+++|.+++ +.+|+++.|++ ..+++.||+...... . ..|++||||++|+|++.+
T Consensus 77 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 77 LKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 77777765 78999999875 799999998753210 0 146899999999999987
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=142.35 Aligned_cols=110 Identities=16% Similarity=0.269 Sum_probs=95.3
Q ss_pred CCeeeccccCCceeeEeccCCC-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccc
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYK-GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPR 440 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~-gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 440 (547)
|+|++.+ .+| +.+++++++ ||++||+|| ++|||+|+.++|.++++++++++ ++.+++++.+..++..+|.+++
T Consensus 1 p~f~l~~-~~G--~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~- 74 (114)
T cd02967 1 PTFDLTT-IDG--APVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKH- 74 (114)
T ss_pred CCceeec-CCC--CEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHh-
Confidence 7899999 888 589999997 999999999 99999999999999999888754 6888888866777888888876
Q ss_pred cCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 441 NKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 441 ~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
++ .||++.+ ..+.+.|++. ..|++||||++|+|++..
T Consensus 75 ------~~~~~p~~~~--~~~~~~~~~~------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 75 ------GLEAFPYVLS--AELGMAYQVS------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred ------CCCCCcEEec--HHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence 66 4888874 5688999987 489999999999999864
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=151.57 Aligned_cols=140 Identities=11% Similarity=0.176 Sum_probs=106.9
Q ss_pred cCCCCCCeeeccc----cCCc---eeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEE------EE
Q psy224 357 LEKPAPEFEGQAV----VNGQ---FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQV------IA 423 (547)
Q Consensus 357 ~g~~~p~~~l~~~----~~G~---~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~v------i~ 423 (547)
+|.++|.+++.+- .+|+ .+.++.++++||+.||+|| |+||++|+.++|.|.++ +++|+.+ ++
T Consensus 25 ~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~~ 99 (184)
T TIGR01626 25 VEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQTTTI 99 (184)
T ss_pred cCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccceEE
Confidence 8999999887761 1221 3567888899999999999 99999999999999988 4558888 99
Q ss_pred EeCCC-hhhHHHHhhccccCCCCCCccee---eecCCChHHHHHhCCcccCCCcceeEE-EEEcCCCcEEEEEecCCCCC
Q psy224 424 CSTDS-HFSHLAWCNIPRNKGGLGDMAIP---ILSDKSMSIARSYGVLNEETGIPYRGL-FIIDDKQNLRQITINDLPVG 498 (547)
Q Consensus 424 is~d~-~~~~~~~~~~~~~~~~~~~~~fp---~l~D~~~~~~~~~~v~~~~~g~~~p~~-~lid~~G~v~~~~~~~~~~~ 498 (547)
|+.|. ......|.+.+.+. .+..|| ++.|.++.+...|++. ..|++ ||||++|+|++.+.|..+..
T Consensus 100 IN~dd~~~~~~~fVk~fie~---~~~~~P~~~vllD~~g~v~~~~gv~------~~P~T~fVIDk~GkVv~~~~G~l~~e 170 (184)
T TIGR01626 100 INADDAIVGTGMFVKSSAKK---GKKENPWSQVVLDDKGAVKNAWQLN------SEDSAIIVLDKTGKVKFVKEGALSDS 170 (184)
T ss_pred EECccchhhHHHHHHHHHHH---hcccCCcceEEECCcchHHHhcCCC------CCCceEEEECCCCcEEEEEeCCCCHH
Confidence 99885 33333444322111 155666 8999999999999998 47887 99999999999999887644
Q ss_pred CCHHHHHHHHHhh
Q psy224 499 RSVDETLRLVQAF 511 (547)
Q Consensus 499 ~~~~~il~~l~~l 511 (547)
.+++++..++++
T Consensus 171 -e~e~~~~li~~l 182 (184)
T TIGR01626 171 -DIQTVISLVNGL 182 (184)
T ss_pred -HHHHHHHHHHHH
Confidence 456667766654
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=167.94 Aligned_cols=130 Identities=16% Similarity=0.298 Sum_probs=108.1
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC------hh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------HF 430 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------~~ 430 (547)
.++++|+|++.| .+| +.++++ +||++||+|| |+|||+|..++|.|.+++++++..+++||+|+.+. ..
T Consensus 34 ~~~~lP~f~l~D-~dG--~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 34 VPHTLSTLKTAD-NRP--ASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDG 107 (521)
T ss_pred ccCCCCCeEeec-CCC--ceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHH
Confidence 667899999999 888 578887 8999999999 99999999999999999999988889999998732 23
Q ss_pred hHHHHhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 431 SHLAWCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+..+|.+.. ++ ++|++.|.+.++++.|++. .+|+++|||++|+|+..+.|..+ .+++.+.|+
T Consensus 108 ~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~~----~eeL~a~Ie 170 (521)
T PRK14018 108 DFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSIS----EAQALALIR 170 (521)
T ss_pred HHHHHHHhC-------CCcccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCCC----HHHHHHHHH
Confidence 344555433 33 6899999999999999998 59999999999999999988775 345555444
|
|
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-17 Score=148.60 Aligned_cols=138 Identities=9% Similarity=0.115 Sum_probs=99.8
Q ss_pred CCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------Chh
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--------SHF 430 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--------~~~ 430 (547)
..+++|++.+ .+| +.++|++|+||++||+|| |+||+.|. +++.|++++++|+++|++|++|+++ +.+
T Consensus 3 ~~~~~f~~~~-~~G--~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVTT-IDG--EVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeEC-CCC--CEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 3578999999 899 699999999999999999 99999885 8999999999999999999999984 446
Q ss_pred hHHHHhh-ccccCCCCCCcceeeecCCC------hHHHHHhCCccc------------------------CCCcceeEEE
Q psy224 431 SHLAWCN-IPRNKGGLGDMAIPILSDKS------MSIARSYGVLNE------------------------ETGIPYRGLF 479 (547)
Q Consensus 431 ~~~~~~~-~~~~~~~~~~~~fp~l~D~~------~~~~~~~~v~~~------------------------~~g~~~p~~~ 479 (547)
++++|++ ++ +++||++.+.+ ..+.+.+.-... ..-...-+.|
T Consensus 78 ei~~f~~~~~-------g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KF 150 (183)
T PRK10606 78 EIKTYCRTTW-------GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKF 150 (183)
T ss_pred HHHHHHHHcc-------CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEE
Confidence 6778876 34 89999995432 223333321100 0001123599
Q ss_pred EEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 480 IIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 480 lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|||++|+++.++.....+ .-.++.++|++
T Consensus 151 Lv~~~G~vv~r~~~~~~p--~~~~i~~~i~~ 179 (183)
T PRK10606 151 LVGRDGQVIQRFSPDMTP--EDPIVMESIKL 179 (183)
T ss_pred EECCCCcEEEEECCCCCC--CHHHHHHHHHH
Confidence 999999999999433322 22334445443
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=134.83 Aligned_cols=113 Identities=25% Similarity=0.441 Sum_probs=102.3
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--hhhHHHHhhccc
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--HFSHLAWCNIPR 440 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--~~~~~~~~~~~~ 440 (547)
+|++.+ .+| +.+++++++||+++|+|| ++||+.|...++.|.++.+++++.++.+++|+.|+ ++..+++.+++
T Consensus 1 ~~~~~~-~~g--~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~- 75 (116)
T cd02966 1 DFSLPD-LDG--KPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY- 75 (116)
T ss_pred CccccC-CCC--CEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence 466777 788 589999999999999999 99999999999999999999987789999999998 78888888776
Q ss_pred cCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 441 NKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 441 ~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
+.+|+++.|.+.++.+.|++. ..|+++|+|++|+|++.+.
T Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 76 ------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred ------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEec
Confidence 789999999999999999997 4899999999999998874
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=137.11 Aligned_cols=112 Identities=18% Similarity=0.330 Sum_probs=98.6
Q ss_pred CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--hhhHHHHhhcc
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--HFSHLAWCNIP 439 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--~~~~~~~~~~~ 439 (547)
|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++ +++++|+.|+ .+..++|.+++
T Consensus 1 p~f~l~~-~~g--~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTATT-LDG--EQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCceeec-CCC--CEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 7899999 888 589999999999999999 99999999999999999876 5778888764 56777888776
Q ss_pred ccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 440 RNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+++||++.|+++++.+.|++. ..|+.+|+|++| +++.+.|..+
T Consensus 72 -------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~g~~~ 114 (123)
T cd03011 72 -------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTTGVTS 114 (123)
T ss_pred -------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEeccCC
Confidence 889999999999999999997 589999999999 9988866554
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-16 Score=138.18 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=86.6
Q ss_pred ccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCCh-hhHHHHhhccccCC
Q psy224 367 QAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSH-FSHLAWCNIPRNKG 443 (547)
Q Consensus 367 ~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~-~~~~~~~~~~~~~~ 443 (547)
.+ .+| +.+++++++||++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|.. ++.+++.++...
T Consensus 4 ~~-~~G--~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~-- 77 (131)
T cd03009 4 LR-NDG--GKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPW-- 77 (131)
T ss_pred cc-cCC--CCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCe--
Confidence 35 677 699999999999999999 999999999999999999999865 799999999864 333444443210
Q ss_pred CCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 444 GLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 444 ~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
..++|+. .|.+..+++.|++. .+|+++|||++|+|+...
T Consensus 78 --~~~~~~~-~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 78 --LAVPFSD-RERRSRLNRTFKIE------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred --eEcccCC-HHHHHHHHHHcCCC------CCCEEEEECCCCCEEccc
Confidence 0233332 34557899999997 489999999999999766
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-16 Score=135.51 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=87.1
Q ss_pred cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCCh-hhHHHHhhccccCCCCC
Q psy224 370 VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSH-FSHLAWCNIPRNKGGLG 446 (547)
Q Consensus 370 ~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~-~~~~~~~~~~~~~~~~~ 446 (547)
++|+ +++++++++||++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|.. ...++|.+++
T Consensus 4 ~~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~------- 74 (132)
T cd02964 4 LDGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM------- 74 (132)
T ss_pred ccCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------
Confidence 4565 589999999999999999 999999999999999999999875 799999999853 5667777765
Q ss_pred Ccceeee--cC--CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 447 DMAIPIL--SD--KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 447 ~~~fp~l--~D--~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
+ +++.+ .| ....+.+.|++. .+|+++|||++|+|++..
T Consensus 75 ~-~~~~~~~~d~~~~~~~~~~~~v~------~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 75 P-PWLAVPFEDEELRELLEKQFKVE------GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred C-CeEeeccCcHHHHHHHHHHcCCC------CCCEEEEECCCCCEEchh
Confidence 3 33332 33 235778889987 589999999999999776
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=175.84 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=110.3
Q ss_pred cCCCCCCeeecc-ccCCceeeEec-cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC---CC---
Q psy224 357 LEKPAPEFEGQA-VVNGQFKNIKL-SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST---DS--- 428 (547)
Q Consensus 357 ~g~~~p~~~l~~-~~~G~~~~~~l-~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~---d~--- 428 (547)
.|.++|+|...+ +.+| +++++ ++++||++||+|| ++||++|+.++|.|++++++|++++++|++|+. |.
T Consensus 393 ~g~~~p~f~~~~~~~~g--~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~ 469 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNT--APLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKD 469 (1057)
T ss_pred cCCcCCCCcccccccCC--ccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccccc
Confidence 788999999875 3567 58888 6899999999999 999999999999999999999998999999984 32
Q ss_pred hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~ 507 (547)
.++.+++.+++ +++||++.|.+.++++.|++. .+|+++|||++|+|+..+.|+.... .++++++.
T Consensus 470 ~~~~~~~~~~~-------~i~~pvv~D~~~~~~~~~~V~------~iPt~ilid~~G~iv~~~~G~~~~~-~l~~~l~~ 534 (1057)
T PLN02919 470 LEAIRNAVLRY-------NISHPVVNDGDMYLWRELGVS------SWPTFAVVSPNGKLIAQLSGEGHRK-DLDDLVEA 534 (1057)
T ss_pred HHHHHHHHHHh-------CCCccEEECCchHHHHhcCCC------ccceEEEECCCCeEEEEEecccCHH-HHHHHHHH
Confidence 23344555544 899999999999999999987 5899999999999999987765322 34444443
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=135.83 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=87.4
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
.....|+|++.+ | +.+++++++ ||+|| ++|||+|+.++|.|++++++| ++.|++|+.|...
T Consensus 51 ~~~~~~~f~l~d---G--~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------ 111 (181)
T PRK13728 51 EKPAPRWFRLSN---G--RQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------ 111 (181)
T ss_pred CCCCCCccCCCC---C--CEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC------
Confidence 444678898864 8 699999997 78899 999999999999999999997 7999999987421
Q ss_pred hccccCCCCCCcceeeecC-CChHHHHHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCCC
Q psy224 437 NIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDLP 496 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D-~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~~ 496 (547)
...||++.| ....+.+.|++.. ..+|++||||++|+++ ..++|..+
T Consensus 112 ----------~~~fPv~~dd~~~~~~~~~g~~~----~~iPttfLId~~G~i~~~~~~G~~~ 159 (181)
T PRK13728 112 ----------DTAFPEALPAPPDVMQTFFPNIP----VATPTTFLVNVNTLEALPLLQGATD 159 (181)
T ss_pred ----------CCCCceEecCchhHHHHHhCCCC----CCCCeEEEEeCCCcEEEEEEECCCC
Confidence 358999885 5677888899521 1589999999999996 57878775
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-14 Score=117.10 Aligned_cols=90 Identities=17% Similarity=0.318 Sum_probs=71.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeCCCh-hhHHHHhhccccCCCCCCcceee---ecCCCh
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACSTDSH-FSHLAWCNIPRNKGGLGDMAIPI---LSDKSM 458 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~d~~-~~~~~~~~~~~~~~~~~~~~fp~---l~D~~~ 458 (547)
||+++|+|| ++||++|..++|.|.+++++|+ +.++++|+||.|.. ++.+++.++. +.+++. ..+...
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN-------NFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC-------TTSSEEEETTTHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc-------CCCceEEeeCcchHH
Confidence 799999999 9999999999999999999999 67899999999853 4445555543 344444 333458
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcE
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNL 487 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v 487 (547)
++.+.|++. .+|+++|+|++|+|
T Consensus 73 ~l~~~~~i~------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGIN------GIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-T------SSSEEEEEETTSBE
T ss_pred HHHHHCCCC------cCCEEEEECCCCCC
Confidence 899999998 58999999999987
|
... |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=111.00 Aligned_cols=125 Identities=26% Similarity=0.468 Sum_probs=111.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++.+ .+. +.+++++++||..||..||+=.+|.|-.+...+++...++. ++.|+.||.|-|+.+.+|
T Consensus 19 ~vGd~ap~ftl~~-~dL--~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~Rf 93 (158)
T COG2077 19 QVGDKAPDFTLVG-KDL--NDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRF 93 (158)
T ss_pred ccCCcCCceEEEc-Ccc--cceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhh
Confidence 3999999999988 666 68999999999999999999999999999999999988886 599999999999999999
Q ss_pred hhccccCCCCCCcc-eeeecCC-ChHHHHHhCCcccCC---CcceeEEEEEcCCCcEEEEEe
Q psy224 436 CNIPRNKGGLGDMA-IPILSDK-SMSIARSYGVLNEET---GIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 436 ~~~~~~~~~~~~~~-fp~l~D~-~~~~~~~~~v~~~~~---g~~~p~~~lid~~G~v~~~~~ 492 (547)
+... ++. ...++|. +.++.++||+...+. |+..|+.|++|.+|+|.|..+
T Consensus 94 C~ae-------Gi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 94 CGAE-------GIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred hhhc-------CcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 9876 665 7788885 477999999987665 787899999999999999884
|
|
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=110.87 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=94.1
Q ss_pred CCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hhhH
Q psy224 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HFSH 432 (547)
Q Consensus 361 ~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~~~ 432 (547)
+-+|++.+ .+| ++++|++|+||++||+-- |+.|..-+ ++..|+++|++|+++|+.|+++.+++ .+++
T Consensus 5 ~yd~~~~~-~~G--~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 5 IYDFSVKD-IDG--EPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred cccceeec-cCC--CCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 44788888 899 699999999999999999 99997666 99999999999999999999999865 3677
Q ss_pred HHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCccc--------CCCcceeEEEEEcCCCcEEEEEe
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNE--------ETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~--------~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
.+|++. +| ++.||++...+ ...+..|..... +.-...-+.||||++|+|+.++.
T Consensus 80 ~~fC~~--~Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 80 AKFCQL--NY----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred HHHHHh--cc----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 888874 45 99999987532 222222322211 11123467999999999999994
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=114.60 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=67.1
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeec
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILS 454 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~ 454 (547)
+.++++++ .||+|| ++|||+|+.++|.|++++++| +++|++|+.|.... -.||...
T Consensus 45 ~~~~l~~~----~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~----------------~~fp~~~ 100 (153)
T TIGR02738 45 RHANQDDY----ALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL----------------TGFPDPL 100 (153)
T ss_pred hhhhcCCC----EEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc----------------ccccccc
Confidence 45665554 499999 999999999999999999887 68999999875321 1344444
Q ss_pred CCChHHH-HHh---CCcccCCCcceeEEEEEcCCCcE-EEEEecCCC
Q psy224 455 DKSMSIA-RSY---GVLNEETGIPYRGLFIIDDKQNL-RQITINDLP 496 (547)
Q Consensus 455 D~~~~~~-~~~---~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~ 496 (547)
|.+.... +.| ++. .+|++||||++|++ +..+.|..+
T Consensus 101 ~~~~~~~~~~~~~~~v~------~iPTt~LID~~G~~i~~~~~G~~s 141 (153)
T TIGR02738 101 PATPEVMQTFFPNPRPV------VTPATFLVNVNTRKAYPVLQGAVD 141 (153)
T ss_pred CCchHHHHHHhccCCCC------CCCeEEEEeCCCCEEEEEeecccC
Confidence 4443443 445 554 58999999999886 446777664
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=117.33 Aligned_cols=125 Identities=22% Similarity=0.353 Sum_probs=92.7
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCC-CCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCCh----
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFT-FVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSH---- 429 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~c-p~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~---- 429 (547)
.....|+|+|.| .+| +.+++++++||++||+|. .+.| ..|+..+..|+++++++.+. .++++.||.||.
T Consensus 28 ~~~~~~~f~L~d-~~G--~~~~~~~~~Gk~~lv~F~-yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTD-QDG--KTVTLDDLKGKWVLVFFG-YTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTP 103 (174)
T ss_dssp TSCSSST-EEEE-TTS--SEEEGGGGTTSEEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-H
T ss_pred CCccCCCcEEEc-CCC--CEecHHHhCCCeEEEEEE-EcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCH
Confidence 344678999999 999 699999999999999999 5555 59999999999999999864 699999999875
Q ss_pred hhHHHHhhccccCCCCCCcceeeec---CCChHHHHHhCCcccCC------C--c--ceeEEEEEcCCCcEEEEEe
Q psy224 430 FSHLAWCNIPRNKGGLGDMAIPILS---DKSMSIARSYGVLNEET------G--I--PYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~fp~l~---D~~~~~~~~~~v~~~~~------g--~--~~p~~~lid~~G~v~~~~~ 492 (547)
+.+++|.+.+ +.+|..+. +.-.++++.|++...+. + . -...++||||+|+++..+.
T Consensus 104 ~~L~~Y~~~~-------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 104 EVLKKYAKKF-------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHCH-------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHhc-------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 4555666554 44444433 33377889999774321 0 0 0245899999999999984
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=114.98 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=105.9
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCC-CCcHHHHHHHHHHHHHHh---hCCcEEEEEeCCChhhHHHHhhc
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFT-FVCPTEIIAFSDRAEEFK---KINTQVIACSTDSHFSHLAWCNI 438 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~c-p~C~~~~~~l~~~~~~~~---~~~~~vi~is~d~~~~~~~~~~~ 438 (547)
+|++.+ .+| +.+++.+++||+.||+|. .+.| ..|+.++..|.++++++. ..+++++.||+|+..+..+..++
T Consensus 49 ~f~l~d-~~G--~~~~~~~l~Gk~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~ 124 (207)
T COG1999 49 DFELTD-QDG--KPFTLKDLKGKPSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKK 124 (207)
T ss_pred ceeeec-CCC--CEeeccccCCCEEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHH
Confidence 799999 899 699999999999999999 5555 599999999999999998 45689999999998777776666
Q ss_pred ccc-CCCCCCcceeeecC---CChHHHHHhCCcccCC---C--cc----eeEEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy224 439 PRN-KGGLGDMAIPILSD---KSMSIARSYGVLNEET---G--IP----YRGLFIIDDKQNLRQITINDLPVGRSVDETL 505 (547)
Q Consensus 439 ~~~-~~~~~~~~fp~l~D---~~~~~~~~~~v~~~~~---g--~~----~p~~~lid~~G~v~~~~~~~~~~~~~~~~il 505 (547)
+.. ++ ...|..+.. ...+++++|++..... + .. ....||||++|+++..+.+..+ .++++
T Consensus 125 Y~~~~~---~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~----~~~i~ 197 (207)
T COG1999 125 YAELNF---DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP----PEEIA 197 (207)
T ss_pred HhcccC---CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC----hHHHH
Confidence 655 33 334544443 3489999999985221 1 00 1358999999999999954443 57777
Q ss_pred HHHHhhH
Q psy224 506 RLVQAFQ 512 (547)
Q Consensus 506 ~~l~~l~ 512 (547)
+.|+.+-
T Consensus 198 ~~l~~l~ 204 (207)
T COG1999 198 ADLKKLL 204 (207)
T ss_pred HHHHHHh
Confidence 7777653
|
|
| >KOG2792|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=113.25 Aligned_cols=138 Identities=14% Similarity=0.196 Sum_probs=100.7
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhhC-C--cEEEEEeCCChhhHHHHhhc
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKKI-N--TQVIACSTDSHFSHLAWCNI 438 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~~-~--~~vi~is~d~~~~~~~~~~~ 438 (547)
.|+|.| .+| +.++-.+|+|||+||||. .+.|| .|+.|+..|.+..+++.++ + +..++|++|+..+..+-+.+
T Consensus 121 pF~L~d-~~G--k~~te~df~Gkw~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~e 196 (280)
T KOG2792|consen 121 PFSLVD-HDG--KRVTEKDFLGKWSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAE 196 (280)
T ss_pred ceEEEe-cCC--CeecccccccceEEEEec-ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHH
Confidence 699999 999 699999999999999999 66665 9999999999999999864 3 44789999885444433333
Q ss_pred cccCCCCCCcceeeecCCChHHHHHhCCcccCC------Ccc---eeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 439 PRNKGGLGDMAIPILSDKSMSIARSYGVLNEET------GIP---YRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 439 ~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~------g~~---~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
+-+-|+.+-+.+..-.+.-..+++.|.|++... ... .=.+|||||+|+++.-+ |. .++.+++.+.+
T Consensus 197 Y~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~-Gr---N~~~~~~~~~I 271 (280)
T KOG2792|consen 197 YVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY-GR---NYDADELADSI 271 (280)
T ss_pred HHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh-cc---cCCHHHHHHHH
Confidence 333445556666666666689999999987441 110 12489999999999887 32 23455655543
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-11 Score=104.75 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=75.9
Q ss_pred eEeccC--CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeee
Q psy224 376 NIKLSQ--YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPIL 453 (547)
Q Consensus 376 ~~~l~~--~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l 453 (547)
...+++ .+||++||+|| ++||++|....|.+.+++++|.. .+.++.|..|...
T Consensus 10 ~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~----------------------- 64 (142)
T cd02950 10 STPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK----------------------- 64 (142)
T ss_pred cCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc-----------------------
Confidence 444444 37899999999 99999999999999999999865 4788888776421
Q ss_pred cCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 454 SDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 454 ~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
..++.+.|++. .+|+++++|++|+++..+.|..+ .+++.+.|+++.
T Consensus 65 ---~~~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G~~~----~~~l~~~l~~l~ 110 (142)
T cd02950 65 ---WLPEIDRYRVD------GIPHFVFLDREGNEEGQSIGLQP----KQVLAQNLDALV 110 (142)
T ss_pred ---cHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCCCC----HHHHHHHHHHHH
Confidence 12456789987 58999999999999999977653 345555555544
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >KOG1651|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-11 Score=103.43 Aligned_cols=124 Identities=15% Similarity=0.246 Sum_probs=94.7
Q ss_pred CCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hh
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HF 430 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~ 430 (547)
..+-+|+..| .+| +.++|+.|+||++|+.-. |+.|..-..++.+|..++++|+++|++|+++.+++ ..
T Consensus 12 ~siydf~~~d-~~G--~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 12 GSIYDFSAKD-LDG--EYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred cceeeeEEec-CCC--CCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 3456899999 999 699999999999999999 99999999999999999999999999999999975 23
Q ss_pred hHHHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCcccCCC-------cceeEEEEEcCCCcEEEEEe
Q psy224 431 SHLAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNEETG-------IPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~~~g-------~~~p~~~lid~~G~v~~~~~ 492 (547)
++..+.. ..+ +..||++..-+ ...+..|+..+...+ ...-+.||||++|+++.++.
T Consensus 88 Ei~~f~~--~r~----~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 88 EILNFVK--VRY----GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHHHHH--hcc----CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 4445554 223 88888876432 233344443332211 12357999999999999993
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=98.48 Aligned_cols=133 Identities=21% Similarity=0.402 Sum_probs=108.9
Q ss_pred ccCCCCCCeeeccccCCc-----eeeEeccCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHhhCCc-EEEEEeCC
Q psy224 356 ALEKPAPEFEGQAVVNGQ-----FKNIKLSQY-KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEFKKINT-QVIACSTD 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~-----~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~-~vi~is~d 427 (547)
.+|+++|+.++.. ..++ ...++.+++ +||.+||+-.|+.++|.|.. ++|.+.+++++|+++|+ +|+.||++
T Consensus 4 ~vg~klP~vtf~t-r~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 4 MVGKKLPAVTFKT-RVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred ccCCcCCceEeEE-eeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 4899999988876 3221 134556665 89999999999999999998 79999999999999998 69999999
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC--C---cceeEEEEEcCCCcEEEEEecCC
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--G---IPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--g---~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+.+...+|.+..-. .-+..++.|.+.++.+.+|+..+.. | ++.|...|+ +||.|.+.++.+.
T Consensus 83 D~FVm~AWak~~g~-----~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p 149 (165)
T COG0678 83 DAFVMNAWAKSQGG-----EGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPP 149 (165)
T ss_pred cHHHHHHHHHhcCC-----CccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCC
Confidence 99999999987511 2278899999999999999887664 2 345778888 5999999997653
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=92.39 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=65.6
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++.+||++||+|| ++||++|+..+|.|.++++++ .++.++.|+.|.... ..+
T Consensus 11 ~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~-------------------------~~~ 62 (103)
T cd02985 11 KKAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDS-------------------------TME 62 (103)
T ss_pred HHcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChH-------------------------HHH
Confidence 4457999999999 999999999999999999998 468888888765211 136
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
++++|++. .+|+++++ ++|+++..+.|..
T Consensus 63 l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~ 91 (103)
T cd02985 63 LCRREKII------EVPHFLFY-KDGEKIHEEEGIG 91 (103)
T ss_pred HHHHcCCC------cCCEEEEE-eCCeEEEEEeCCC
Confidence 77888988 58997666 8999999996644
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-10 Score=110.54 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=81.6
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeec
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILS 454 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~ 454 (547)
+...+++++||++||+|| ++|||+|..++|.|++++++| |++|++|+.|.... -.||..
T Consensus 157 ~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~----------------~~fp~~- 215 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL----------------PGFPNA- 215 (271)
T ss_pred HHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc----------------ccCCcc-
Confidence 357889999999999999 999999999999999999987 69999999986321 125554
Q ss_pred CCChHHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 455 DKSMSIARSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 455 D~~~~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+..+++.||+. .+|++||+|++ |++.....|..+ .+++.+.+..+
T Consensus 216 ~~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~~s----~~eL~~~i~~~ 263 (271)
T TIGR02740 216 RPDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGVMS----ADELVDRILLA 263 (271)
T ss_pred cCCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCCCC----HHHHHHHHHHH
Confidence 3456788999997 58999999994 666656656553 34555555443
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=92.84 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=75.3
Q ss_pred CC-CeEEEEEEeCCCCCCcHHHHHHHH---HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 383 KG-QYVVLFFYPLDFTFVCPTEIIAFS---DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 383 ~g-k~~ll~f~~~~~cp~C~~~~~~l~---~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
.| |+++|+|| ++||++|....+.+. ++.+.++ .++.++.|+.+.......| +.....+.
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~---------------~~~~~~~~ 74 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDF---------------DGEALSEK 74 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeecc---------------CCCCccHH
Confidence 57 89999999 999999999998875 5555555 3688888887754322221 11123568
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++++|++. .+|+++++|++ |+++....|..+ .+++.+.|+.+.
T Consensus 75 ~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~~----~~~~~~~l~~~~ 119 (125)
T cd02951 75 ELARKYRVR------FTPTVIFLDPEGGKEIARLPGYLP----PDEFLAYLEYVQ 119 (125)
T ss_pred HHHHHcCCc------cccEEEEEcCCCCceeEEecCCCC----HHHHHHHHHHHH
Confidence 899999987 58999999999 899999876653 355666666554
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >KOG2501|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=93.58 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=87.0
Q ss_pred eeeccccCCceeeEecc-CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCC-hhhHHHHhhcc
Q psy224 364 FEGQAVVNGQFKNIKLS-QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDS-HFSHLAWCNIP 439 (547)
Q Consensus 364 ~~l~~~~~G~~~~~~l~-~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~-~~~~~~~~~~~ 439 (547)
..+.. .+| ..+..+ .++||++.++|- |.|||+|+.-.|.|.++|++.++. .+.||.||.|. .++..++.+++
T Consensus 15 ~~l~~-~~~--~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 15 NRLRK-QDG--TEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred Ceeec-cCC--ccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc
Confidence 34444 556 345554 569999999998 999999999999999999999864 49999999985 45666666654
Q ss_pred ccCCCCCCcceeee---cCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 440 RNKGGLGDMAIPIL---SDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 440 ~~~~~~~~~~fp~l---~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
+.+|..+ .+..+++.+.|++. .+|+..+++++|+++...
T Consensus 91 -------~~~W~~iPf~d~~~~~l~~ky~v~------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 -------HGDWLAIPFGDDLIQKLSEKYEVK------GIPALVILKPDGTVVTED 132 (157)
T ss_pred -------CCCeEEecCCCHHHHHHHHhcccC------cCceeEEecCCCCEehHh
Confidence 5555544 33448999999998 589999999999998766
|
|
| >KOG0541|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=91.65 Aligned_cols=137 Identities=18% Similarity=0.314 Sum_probs=106.8
Q ss_pred hhccCCCCCCeeeccccCCc-----eeeEeccCC-CCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHhhCCc-EEEEEe
Q psy224 354 SYALEKPAPEFEGQAVVNGQ-----FKNIKLSQY-KGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEFKKINT-QVIACS 425 (547)
Q Consensus 354 ~~~~g~~~p~~~l~~~~~G~-----~~~~~l~~~-~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~~-~vi~is 425 (547)
+..+|+..|+.++.. ...+ ..+++++++ +||.+||+=.|+.+.|.|. .++|.+....++|+++|+ +||.||
T Consensus 8 ~i~vGd~~p~~~is~-~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISL-FEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred cccccCccccccchh-hccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 445899999933221 1111 027888887 8999999999999999964 559999999999999998 589999
Q ss_pred CCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC-----cceeEEEEEcCCCcEEEEEecCCCC
Q psy224 426 TDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-----IPYRGLFIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g-----~~~p~~~lid~~G~v~~~~~~~~~~ 497 (547)
+|+++....|.+.+.. +-...++.|++.++.+.+|+..+... ++-|..++++ ||+|....+.+...
T Consensus 87 VnDpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vve-ngkV~~~nvE~~g~ 157 (171)
T KOG0541|consen 87 VNDPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVE-NGKVTVVNVEEGGT 157 (171)
T ss_pred cCcHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeeccccCccccccEEEEEe-CCeEEEEEeccCCC
Confidence 9999999999988721 44678899999999999998876431 3346677775 99999999766544
|
|
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.9e-09 Score=88.14 Aligned_cols=90 Identities=10% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
..++++++|+|| ++||++|....|.+.++.++++..++.++.|.+|. +..+
T Consensus 21 ~~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----------------------------~~~l 71 (111)
T cd02963 21 KSFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----------------------------ERRL 71 (111)
T ss_pred ccCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----------------------------cHHH
Confidence 346899999999 99999999999999999999986667777776552 3467
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+++|++. .+|++++++ +|+++....|.. ..+++.+.|++
T Consensus 72 ~~~~~V~------~~Pt~~i~~-~g~~~~~~~G~~----~~~~l~~~i~~ 110 (111)
T cd02963 72 ARKLGAH------SVPAIVGII-NGQVTFYHDSSF----TKQHVVDFVRK 110 (111)
T ss_pred HHHcCCc------cCCEEEEEE-CCEEEEEecCCC----CHHHHHHHHhc
Confidence 7889987 589999995 999888775544 34566666654
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-09 Score=87.82 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=65.1
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++++||+++|+|| ++||++|+..+|.+.+++++|+ ++.++.|..+. ....
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~---------------------------~~~~ 63 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS---------------------------IKPS 63 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC---------------------------CCHH
Confidence 4679999999999 9999999999999999999986 46677664331 1347
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++++|++. .+||+++++ +| .+..+.|.. +.+++.+
T Consensus 64 l~~~~~V~------~~PT~~lf~-~g-~~~~~~G~~----~~~~l~~ 98 (100)
T cd02999 64 LLSRYGVV------GFPTILLFN-ST-PRVRYNGTR----TLDSLAA 98 (100)
T ss_pred HHHhcCCe------ecCEEEEEc-CC-ceeEecCCC----CHHHHHh
Confidence 78999998 589999997 45 556665543 4455443
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=85.33 Aligned_cols=87 Identities=9% Similarity=0.117 Sum_probs=66.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++||++|+...|.+.++++++++..++++.+..| +.++++
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----------------------------~~~~~~ 65 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----------------------------TIDTLK 65 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----------------------------CHHHHH
Confidence 5789999999 9999999999999999999886545566666544 134568
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. ..|+.+++ ++|+++....|. +.+++++.|+++
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~-----~~~~~~~~i~~~ 102 (102)
T cd02948 66 RYRGK------CEPTFLFY-KNGELVAVIRGA-----NAPLLNKTITEL 102 (102)
T ss_pred HcCCC------cCcEEEEE-ECCEEEEEEecC-----ChHHHHHHHhhC
Confidence 99988 58977666 699999888663 346677766643
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=82.63 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=65.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.+.++++.++. .+.++.|.++ ...++++
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~l~~ 60 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCD----------------------------AQPQIAQ 60 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEecc----------------------------CCHHHHH
Confidence 5789999999 99999999999999999998864 3566666543 2357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
+|++. .+|++++++ +|+++..+.|.. +.+++.+.|
T Consensus 61 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~l 95 (96)
T cd02956 61 QFGVQ------ALPTVYLFA-AGQPVDGFQGAQ----PEEQLRQML 95 (96)
T ss_pred HcCCC------CCCEEEEEe-CCEEeeeecCCC----CHHHHHHHh
Confidence 89987 589999997 999988876544 344544443
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.8e-08 Score=82.21 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=69.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++||+|| |+||++|+...|.|.++.+++.+. +.++-|..| ..+++++
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD----------------------------~~~~la~ 62 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDID----------------------------EVPDFNK 62 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECC----------------------------CCHHHHH
Confidence 4679999999 999999999999999999988632 455555443 3568889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC------CCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG------RSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~------~~~~~il~~l~~l 511 (547)
.|+|. .+||++++ ++|+.+.+..|..+.. .+-++.++.+..+
T Consensus 63 ~~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 63 MYELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred HcCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 99998 58999999 6999999997755432 2445555555433
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=83.74 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=67.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+|++||+|| ++||++|....+.+ .++.+.+++ +++++.|..+.... ...+
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~------------------------~~~~ 63 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP------------------------EITA 63 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH------------------------HHHH
Confidence 5799999999 99999999998877 567777765 78888877653211 1246
Q ss_pred HHHHhCCcccCCCcceeEEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDD-KQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~-~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
++++|++. .+|+++++++ +|+++.++.|.. +.+++.+.|
T Consensus 64 ~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~~----~~~~l~~~l 103 (104)
T cd02953 64 LLKRFGVF------GPPTYLFYGPGGEPEPLRLPGFL----TADEFLEAL 103 (104)
T ss_pred HHHHcCCC------CCCEEEEECCCCCCCCccccccc----CHHHHHHHh
Confidence 77889987 5899999999 899988886555 345555544
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-08 Score=81.14 Aligned_cols=82 Identities=16% Similarity=0.352 Sum_probs=67.6
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hhhHHH
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HFSHLA 434 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~~~~~ 434 (547)
+|++.+ ++| +.++|++|+||++||+-. |+.|+.-. ++..|++++++|+++|++|+++.+++ .+++++
T Consensus 3 df~~~~-~~G--~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAKD-IDG--KPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEEB-TTS--SEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeeeC-CCC--CEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence 678888 899 699999999999999999 99999888 99999999999999999999999875 234455
Q ss_pred HhhccccCCCCCCcceeeecC
Q psy224 435 WCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D 455 (547)
++... + +..||+...
T Consensus 78 ~~~~~--~----~~~F~vf~k 92 (108)
T PF00255_consen 78 FCKEK--F----GVTFPVFEK 92 (108)
T ss_dssp HHCHC--H----T-SSEEBS-
T ss_pred HHHhc--c----CCcccceEE
Confidence 55531 2 788888764
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-08 Score=83.88 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=70.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh--hCCcEEEEEeCCChhh-HHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK--KINTQVIACSTDSHFS-HLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~--~~~~~vi~is~d~~~~-~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.||++|++|| ..|||+|....+.+.+..+--. +.++.++.+..+...+ ...+.+.. +.+++.. ...+
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFD-------GQKNVRL--SNKE 73 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHT-------CHSSCHH--HHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccc-------cchhhhH--HHHH
Confidence 5799999999 9999999998888886554222 2358888888876543 23344422 2222222 3468
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
+++.||+. .+|+.+++|++|+++....|..+ .+++++.|
T Consensus 74 l~~~~~v~------gtPt~~~~d~~G~~v~~~~G~~~----~~~l~~~L 112 (112)
T PF13098_consen 74 LAQRYGVN------GTPTIVFLDKDGKIVYRIPGYLS----PEELLKML 112 (112)
T ss_dssp HHHHTT--------SSSEEEECTTTSCEEEEEESS------HHHHHHHH
T ss_pred HHHHcCCC------ccCEEEEEcCCCCEEEEecCCCC----HHHHHhhC
Confidence 99999998 58999999999999988877664 45555543
|
... |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-07 Score=90.20 Aligned_cols=74 Identities=16% Similarity=0.320 Sum_probs=60.6
Q ss_pred ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCc-EEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhh
Q psy224 273 ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGIN-RIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMR 351 (547)
Q Consensus 273 ~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~-~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~ 351 (547)
..+..+.... +++++++++++++++.++..+. ..+++ +|+++||+ ++|+.|++.+++.++.++.+++.++.+
T Consensus 168 ~vi~~l~~g~-~~~di~~~~~~~va~~i~~~~~-----~~~~~~~Vvl~GGv-a~n~~l~~~l~~~lg~~v~~~~~~~~~ 240 (248)
T TIGR00241 168 ELISLLAAGV-KKEDILAGVYESIAERVAEMLQ-----RLKIEAPIVFTGGV-SKNKGLVKALEKKLGMKVITPPEPQIV 240 (248)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHh-----hcCCCCCEEEECcc-ccCHHHHHHHHHHhCCcEEcCCCccHH
Confidence 3444556665 8999999999999999998665 22355 89999997 999999999999999999999888654
Q ss_pred hh
Q psy224 352 DA 353 (547)
Q Consensus 352 ~a 353 (547)
++
T Consensus 241 ~A 242 (248)
T TIGR00241 241 GA 242 (248)
T ss_pred HH
Confidence 43
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=79.64 Aligned_cols=86 Identities=13% Similarity=0.254 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++|||+|....|.++++.++++. ++.++.+.++. ...+.+
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 69 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAP 69 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCC----------------------------ChhHHH
Confidence 3689999999 99999999999999999999975 47777776543 234567
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+|++. ..|+++++ ++|+++....|..+ .+++.+.++
T Consensus 70 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~i~ 105 (109)
T PRK09381 70 KYGIR------GIPTLLLF-KNGEVAATKVGALS----KGQLKEFLD 105 (109)
T ss_pred hCCCC------cCCEEEEE-eCCeEEEEecCCCC----HHHHHHHHH
Confidence 88887 58999999 69999998866543 345555444
|
|
| >KOG0910|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=81.88 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=64.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++||||.|| |.||.+|....|.|+++.++|.. .++++-|.+ |+..+++.
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdt----------------------------D~~~ela~ 109 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDT----------------------------DEHPELAE 109 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcc----------------------------ccccchHh
Confidence 4689999999 99999999999999999999843 356655544 34578889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.|+|. +.|+++++ ++|..+.+++|..+
T Consensus 110 ~Y~I~------avPtvlvf-knGe~~d~~vG~~~ 136 (150)
T KOG0910|consen 110 DYEIS------AVPTVLVF-KNGEKVDRFVGAVP 136 (150)
T ss_pred hccee------eeeEEEEE-ECCEEeeeecccCC
Confidence 99998 69999999 59999999977765
|
|
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=77.83 Aligned_cols=80 Identities=10% Similarity=0.055 Sum_probs=62.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| |+||++|+...|.+.++.+++.. .+.++-|..|.... | ..++++
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~-----------------------d-~~~l~~ 66 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDV-----------------------D-REKAVK 66 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCcccc-----------------------c-cHHHHH
Confidence 5789999999 99999999999999999877532 35666666654210 1 246889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+|+|. .+||.+++ ++|+.+.+..|..
T Consensus 67 ~~~I~------~iPT~i~f-k~G~~v~~~~G~~ 92 (103)
T PHA02278 67 LFDIM------STPVLIGY-KDGQLVKKYEDQV 92 (103)
T ss_pred HCCCc------cccEEEEE-ECCEEEEEEeCCC
Confidence 99998 58999999 5899999997754
|
|
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=76.44 Aligned_cols=85 Identities=8% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+|+ .+|+|| ++||++|....|.+.+++++++..++.+..|.++ .+..+++
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~~~~ 65 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVT----------------------------QEPGLSG 65 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc----------------------------CCHhHHH
Confidence 566 579999 9999999999999999998876555666655432 2345778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+|++. .+|+++++ ++|++ ..+.|.. ..+++.+.++
T Consensus 66 ~~~i~------~~Pt~~~~-~~g~~-~~~~G~~----~~~~l~~~i~ 100 (101)
T cd02994 66 RFFVT------ALPTIYHA-KDGVF-RRYQGPR----DKEDLISFIE 100 (101)
T ss_pred HcCCc------ccCEEEEe-CCCCE-EEecCCC----CHHHHHHHHh
Confidence 89987 58999887 78986 5554533 4556666554
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-07 Score=76.73 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=62.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++++++|+|| ++|||+|+...|.+.+++++++..+ +.+..+.++ ....+
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~----------------------------~~~~~ 64 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT----------------------------AYSSI 64 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc----------------------------cCHhH
Confidence 4578999999 9999999999999999999997544 334333332 23467
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
++.|++. .+|+.++++ +|. ...+.|.. ..+++.+.++++
T Consensus 65 ~~~~~I~------~~Pt~~l~~-~~~-~~~~~G~~----~~~~l~~~~~~~ 103 (104)
T cd03000 65 ASEFGVR------GYPTIKLLK-GDL-AYNYRGPR----TKDDIVEFANRV 103 (104)
T ss_pred HhhcCCc------cccEEEEEc-CCC-ceeecCCC----CHHHHHHHHHhh
Confidence 7889987 589999994 454 34454433 456666666543
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.2e-07 Score=79.37 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|+++|+|| ++||++|....+.|.++++++.. ++.++.|..+ .+.++++
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~----------------------------~~~~l~~ 100 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTE----------------------------AERELSA 100 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCC----------------------------CCHHHHH
Confidence 4789999999 99999999999999999988764 4666665432 2457888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|++. .+|+.++++ +|+++..+.|.. ..+++.+.|++
T Consensus 101 ~~~V~------~~Ptlii~~-~G~~v~~~~G~~----~~e~l~~~l~~ 137 (139)
T PRK10996 101 RFRIR------SIPTIMIFK-NGQVVDMLNGAV----PKAPFDSWLNE 137 (139)
T ss_pred hcCCC------ccCEEEEEE-CCEEEEEEcCCC----CHHHHHHHHHH
Confidence 99988 589988884 999999886654 34556666654
|
|
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.4e-07 Score=81.07 Aligned_cols=81 Identities=9% Similarity=0.082 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.+.++.+++...+++++.|.+|.. .++++
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~----------------------------~~la~ 96 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF----------------------------PNVAE 96 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC----------------------------HHHHH
Confidence 4679999999 999999999999999999999766788888877552 34455
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
+|++.....-..+||.+++ ++|+.+.+..|
T Consensus 97 ~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 97 KFRVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred HcCceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 5665410000137999999 49999999976
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-07 Score=77.35 Aligned_cols=87 Identities=15% Similarity=0.266 Sum_probs=65.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|.|| ++|||+|....|.+.+++++++..++.++.|.+|.. +..+++
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---------------------------~~~~~~ 71 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---------------------------QREFAK 71 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---------------------------chhhHH
Confidence 5789999999 999999999999999999999876788888877651 112333
Q ss_pred -HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 463 -SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 463 -~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
.|++. .+|+.++++++++....+.++ .++.+.++.
T Consensus 72 ~~~~v~------~~Pti~~f~~~~~~~~~y~g~---~~~~~~l~~ 107 (109)
T cd02993 72 EELQLK------SFPTILFFPKNSRQPIKYPSE---QRDVDSLLM 107 (109)
T ss_pred hhcCCC------cCCEEEEEcCCCCCceeccCC---CCCHHHHHh
Confidence 47876 489999998887766666432 135555543
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-07 Score=75.68 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=61.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|.|| ++||++|....|.+.++.++++. .+.++.|.++ .+.++++
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~~~~ 67 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQ----------------------------KYESLCQ 67 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECC----------------------------chHHHHH
Confidence 4679999999 99999999999999999999853 4666666544 2356778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
.|++. .+|+.++++++|+....+.|..
T Consensus 68 ~~~i~------~~Pt~~~~~~g~~~~~~~~G~~ 94 (104)
T cd03004 68 QANIR------AYPTIRLYPGNASKYHSYNGWH 94 (104)
T ss_pred HcCCC------cccEEEEEcCCCCCceEccCCC
Confidence 89987 5899999976668888886544
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-06 Score=77.15 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=72.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||.|| ++||++|....|.|.++.+++++. +.|+-|.+| ..+++++
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVD----------------------------e~~dla~ 71 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDIT----------------------------EVPDFNT 71 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECC----------------------------CCHHHHH
Confidence 4689999999 999999999999999999988532 455555554 3467888
Q ss_pred HhCCcccCCCcceeEEE-EEcCCCc-EEEEEecCCC----CCCCHHHHHHHHHhhHhhhhcCcc
Q psy224 463 SYGVLNEETGIPYRGLF-IIDDKQN-LRQITINDLP----VGRSVDETLRLVQAFQFVAEHGEV 520 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~-lid~~G~-v~~~~~~~~~----~~~~~~~il~~l~~l~~~~~~~~~ 520 (547)
.|++. ..|+++ ++ ++|+ .+....|..+ ...+.+++++.++.+.-.+..|..
T Consensus 72 ~y~I~------~~~t~~~ff-k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~ 128 (142)
T PLN00410 72 MYELY------DPCTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRG 128 (142)
T ss_pred HcCcc------CCCcEEEEE-ECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCe
Confidence 89987 245555 66 6888 5666655321 123678888888887766666543
|
|
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.3e-07 Score=73.33 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=60.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|+++++|| ++||+.|....+.+.++.+++.. ++.++.|..| .+.++++
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d----------------------------~~~~l~~ 61 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID----------------------------EDQEIAE 61 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC----------------------------CCHHHHH
Confidence 4689999999 99999999999999999988864 4566555543 2356778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
.|++. ..|+.++++ +|+++....+..
T Consensus 62 ~~~v~------~vPt~~i~~-~g~~v~~~~g~~ 87 (97)
T cd02949 62 AAGIM------GTPTVQFFK-DKELVKEISGVK 87 (97)
T ss_pred HCCCe------eccEEEEEE-CCeEEEEEeCCc
Confidence 88887 589999995 899998886544
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-07 Score=76.15 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=60.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++||++|....|.+.++.++++. .+.+..|.+|. +..+++
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 66 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD----------------------------DRMLCR 66 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc----------------------------cHHHHH
Confidence 5689999999 99999999999999999999874 36777776643 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+|++. .+|+.+++ ++|+....+.|.
T Consensus 67 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~ 91 (101)
T cd03003 67 SQGVN------SYPSLYVF-PSGMNPEKYYGD 91 (101)
T ss_pred HcCCC------ccCEEEEE-cCCCCcccCCCC
Confidence 88987 58999999 688877666443
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.6e-07 Score=76.48 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=65.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++||++|....|.+.+++++++. .+.++.|+++.. .+.++.+
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------~~~~~~~ 68 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------KNKPLCG 68 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------ccHHHHH
Confidence 4788999999 99999999999999999998864 477888877641 1357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCc----EEEEEecCCCCCCCHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQN----LRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~----v~~~~~~~~~~~~~~~~il~~ 507 (547)
.|++. .+|+.+++++++. +...+.|+ +..+++.+.
T Consensus 69 ~~~i~------~~Pt~~~~~~~~~~~~~~~~~~~G~----~~~~~l~~f 107 (109)
T cd03002 69 KYGVQ------GFPTLKVFRPPKKASKHAVEDYNGE----RSAKAIVDF 107 (109)
T ss_pred HcCCC------cCCEEEEEeCCCcccccccccccCc----cCHHHHHHH
Confidence 99988 5899999987763 34444333 245555544
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >KOG0907|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.6e-07 Score=73.72 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=64.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|.+|++|+ ++||++|+.-.|.+.++..+|.+ +.++-|.+|. ..++++
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde----------------------------~~~~~~ 68 (106)
T KOG0907|consen 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE----------------------------LEEVAK 68 (106)
T ss_pred CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc----------------------------CHhHHH
Confidence 3689999999 99999999999999999999985 7888887765 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.|++. ..||+.++ ++|+.+...+|...
T Consensus 69 ~~~V~------~~PTf~f~-k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 69 EFNVK------AMPTFVFY-KGGEEVDEVVGANK 95 (106)
T ss_pred hcCce------EeeEEEEE-ECCEEEEEEecCCH
Confidence 99998 58999999 79999999976553
|
|
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=72.46 Aligned_cols=92 Identities=11% Similarity=0.132 Sum_probs=69.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||.|+ ++||++|...-|.|.++.++|++. +.++-|.+|. .+++++
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe----------------------------v~dva~ 62 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK----------------------------VPVYTQ 62 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc----------------------------cHHHHH
Confidence 5899999999 999999999999999999999632 6677766653 356778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC------CCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG------RSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~------~~~~~il~~l~~l 511 (547)
.|++. +.|+++++ ++|+-+....|..+.. .+-++.++.++.+
T Consensus 63 ~y~I~------amPtfvff-kngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 63 YFDIS------YIPSTIFF-FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred hcCce------eCcEEEEE-ECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 88987 57999988 6888888886654321 1345666665544
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.1e-07 Score=73.90 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=59.4
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++|+|| ++||++|....|.+.+++++++. .++.++.|.++ .+..+++.
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~----------------------------~~~~~~~~ 68 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT----------------------------QHRELCSE 68 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC----------------------------CChhhHhh
Confidence 5899999 99999999999999999999975 34666655433 23467788
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
|++. ..|+.+++ ++|+.+..+.|..+
T Consensus 69 ~~v~------~~Pt~~~~-~~g~~~~~~~G~~~ 94 (102)
T cd03005 69 FQVR------GYPTLLLF-KDGEKVDKYKGTRD 94 (102)
T ss_pred cCCC------cCCEEEEE-eCCCeeeEeeCCCC
Confidence 9987 58999999 68888888866653
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=72.95 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=59.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++++++|+|| ++||++|+...|.+.++.+++++. .+.++.+.++. +.+..+.
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------------------------~~~~~~~ 68 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--------------------------PEHDALK 68 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--------------------------CccHHHH
Confidence 4678999999 999999999999999999998752 34555554432 1245778
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+.|++. .+|+.+++ ++|+++..+.|..
T Consensus 69 ~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~ 95 (104)
T cd02997 69 EEYNVK------GFPTFKYF-ENGKFVEKYEGER 95 (104)
T ss_pred HhCCCc------cccEEEEE-eCCCeeEEeCCCC
Confidence 899987 48987666 6899888775544
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-07 Score=77.04 Aligned_cols=83 Identities=12% Similarity=0.178 Sum_probs=57.2
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
+.+..++|+++|+|| ++||++|+...|.+.+..+... .+..++.|..|....
T Consensus 13 ~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~-------------------------- 64 (117)
T cd02959 13 KEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE-------------------------- 64 (117)
T ss_pred HHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC--------------------------
Confidence 344457899999999 9999999999999988766543 344566665553210
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
.....|++. +..+|+++++|++|+++..+++
T Consensus 65 -~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 65 -PKDEEFSPD----GGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred -chhhhcccC----CCccceEEEECCCCCCchhhcc
Confidence 111244443 1137999999999999886543
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-06 Score=72.25 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=64.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC-cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN-TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++++++|+|| ++||+.|+...+.+.++.+.++..+ +.++.+.. |.+..+.
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~----------------------------~~~~~~~ 62 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA----------------------------TAEKDLA 62 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc----------------------------cchHHHH
Confidence 6899999999 9999999999999999998886543 44444433 2346778
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.|++. .+|+.+++++++. ...+.|.. ..+++.+.+++
T Consensus 63 ~~~~i~------~~P~~~~~~~~~~-~~~~~g~~----~~~~l~~~i~~ 100 (102)
T TIGR01126 63 SRFGVS------GFPTIKFFPKGKK-PVDYEGGR----DLEAIVEFVNE 100 (102)
T ss_pred HhCCCC------cCCEEEEecCCCc-ceeecCCC----CHHHHHHHHHh
Confidence 889987 5899999998877 55564543 34555555543
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-06 Score=78.34 Aligned_cols=184 Identities=11% Similarity=0.137 Sum_probs=121.0
Q ss_pred cHHHHHHHHHHhCCceEEecchhhhhhh--hc-cCCCCCCeeeccccCCceeeEeccCC-CCCe-EEEEEEe-----CCC
Q psy224 327 NHILQHYIERIYGLQLIVEQDQAMRDAS--YA-LEKPAPEFEGQAVVNGQFKNIKLSQY-KGQY-VVLFFYP-----LDF 396 (547)
Q Consensus 327 ~~~~~q~~Ad~l~~~v~~~~~~~~~~a~--~~-~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~-~ll~f~~-----~~~ 396 (547)
...|.......+.+........+..++. .+ .+..-.++.+.. .+| +++|+|+ .||- +||+.|. ..-
T Consensus 9 ~eew~~Ar~~LL~~EKeltR~~dalaa~RR~LP~v~v~~~Y~F~g-~~G---~v~L~dLF~Gr~qLivyhfM~~p~~~~~ 84 (211)
T PF05988_consen 9 REEWLAARDALLAREKELTRARDALAAERRRLPMVEVDKDYVFDG-PDG---PVSLADLFEGRRQLIVYHFMFGPDWDEG 84 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeEEeC-CCC---cccHHHHcCCCceEEEEeeccCCCCCCC
Confidence 4456666655555444443333222221 11 334444576765 667 7999997 7763 4444443 468
Q ss_pred CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC-cce
Q psy224 397 TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-IPY 475 (547)
Q Consensus 397 cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g-~~~ 475 (547)
||.|...+..++.....+.++++.+++||-.+.+++..|.+.. ++.||.++..+..+...|++..+..+ ...
T Consensus 85 C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g 157 (211)
T PF05988_consen 85 CPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGGEMPG 157 (211)
T ss_pred CCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhc-------CCCceEEEcCCCcccccccceeccCCCcee
Confidence 9999999999988888899999999999999999999999987 99999999888888889998664322 212
Q ss_pred eEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhhhcCcc-ccCCc
Q psy224 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEV-CPAGW 525 (547)
Q Consensus 476 p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~~~~~-~~~~w 525 (547)
=+.|+-| +|+|.+.+.. ..+-.+.+.-...-|-.++...+. -|.+|
T Consensus 158 ~svF~Rd-g~~VfhTyst---~~RG~e~l~~~~~lLDlTP~GR~E~~~~~W 204 (211)
T PF05988_consen 158 LSVFLRD-GGRVFHTYST---YGRGGERLMPTWNLLDLTPLGRQEDPPMDW 204 (211)
T ss_pred EEEEEEc-CCEEEEEeec---CCCCchhhhhHHHHHhcCCCCCCCCCCCCc
Confidence 2456555 4888888842 333344444444444444444333 46677
|
|
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=73.98 Aligned_cols=76 Identities=5% Similarity=0.062 Sum_probs=59.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH-
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA- 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~- 461 (547)
.++++||.|| ++||++|+...|.+.++.+++++ .+.++.|.+|. +..++
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~----------------------------~~~l~~ 77 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWW----------------------------PQGKCR 77 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------ChHHHH
Confidence 4689999999 99999999999999999999864 26666665543 23455
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
++|++. .+|+..++ ++|+....+.|..
T Consensus 78 ~~~~I~------~~PTl~lf-~~g~~~~~y~G~~ 104 (113)
T cd03006 78 KQKHFF------YFPVIHLY-YRSRGPIEYKGPM 104 (113)
T ss_pred HhcCCc------ccCEEEEE-ECCccceEEeCCC
Confidence 578887 58999988 6888776665544
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-06 Score=70.73 Aligned_cols=74 Identities=11% Similarity=0.195 Sum_probs=58.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+|+++|+|| ++||++|....+.|.++.+++ ..++.++.+..+ ...++.++
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~----------------------------~~~~~~~~ 63 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE----------------------------ELPEISEK 63 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc----------------------------cCHHHHHh
Confidence 689999999 999999999999999999887 335666655321 13577889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
|++. ..|+.++++ +|+++....|.
T Consensus 64 ~~i~------~~Pt~~~~~-~g~~~~~~~g~ 87 (97)
T cd02984 64 FEIT------AVPTFVFFR-NGTIVDRVSGA 87 (97)
T ss_pred cCCc------cccEEEEEE-CCEEEEEEeCC
Confidence 9987 589999885 89999888553
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-06 Score=70.67 Aligned_cols=87 Identities=15% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++||+|| +.||+.|....|.+.++.+++++ ++.++-|..+. +..+++
T Consensus 16 ~~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 65 (103)
T PF00085_consen 16 SDKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE----------------------------NKELCK 65 (103)
T ss_dssp TSSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------SHHHHH
T ss_pred cCCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc----------------------------cchhhh
Confidence 3689999999 99999999999999999999887 77777776542 357889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|++. .+|+.+++ ++|+....+.+.. +.+++.+.|++
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~i~~ 102 (103)
T PF00085_consen 66 KYGVK------SVPTIIFF-KNGKEVKRYNGPR----NAESLIEFIEK 102 (103)
T ss_dssp HTTCS------SSSEEEEE-ETTEEEEEEESSS----SHHHHHHHHHH
T ss_pred ccCCC------CCCEEEEE-ECCcEEEEEECCC----CHHHHHHHHHc
Confidence 99998 58999999 4888888776553 46677776653
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-06 Score=72.99 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=60.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCccee-eecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP-ILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~ 461 (547)
.+++++|+|| ++||++|+...|.+.++++++++.. .+. ..+.|. +-.|.+.+++
T Consensus 17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~-----------------~~~-------~~~~~~~vd~d~~~~l~ 71 (108)
T cd02996 17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEF-----------------PDA-------GKVVWGKVDCDKESDIA 71 (108)
T ss_pred cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhcc-----------------CCC-------CcEEEEEEECCCCHHHH
Confidence 3678999999 9999999999999999998886421 000 022332 2245567889
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCCCCCCCHHHHHH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDLPVGRSVDETLR 506 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~~~~~~~~~il~ 506 (547)
++|++. .+|+.+++ ++|++. ..+.| .++.+++.+
T Consensus 72 ~~~~v~------~~Ptl~~~-~~g~~~~~~~~g----~~~~~~l~~ 106 (108)
T cd02996 72 DRYRIN------KYPTLKLF-RNGMMMKREYRG----QRSVEALAE 106 (108)
T ss_pred HhCCCC------cCCEEEEE-eCCcCcceecCC----CCCHHHHHh
Confidence 999998 58999999 688854 44433 234555544
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=71.07 Aligned_cols=74 Identities=9% Similarity=0.240 Sum_probs=59.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++||++|....+.+.++.+++. ++.++.|..+ ....+.+
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~----------------------------~~~~~~~ 65 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVD----------------------------ELSEVAE 65 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECc----------------------------chHHHHH
Confidence 4689999999 9999999999999999998764 4666665432 2357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+|++. ..|+.+++ ++|+++..+.|.
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~ 90 (98)
T PTZ00051 66 KENIT------SMPTFKVF-KNGSVVDTLLGA 90 (98)
T ss_pred HCCCc------eeeEEEEE-eCCeEEEEEeCC
Confidence 99987 58987766 799999999764
|
|
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.6e-06 Score=72.64 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=52.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-C-cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-N-TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~-~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
+|+++|+|| ++||++|....|.+.++.++|++. + +.+..|.++. +.+.++.
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--------------------------~~~~~~~ 71 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--------------------------EENVALC 71 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--------------------------hhhHHHH
Confidence 479999999 999999999999999999988642 2 4444443322 1235778
Q ss_pred HHhCCcccCCCcceeEEEEEcCCC
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQ 485 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G 485 (547)
+.|++. .+|+.+++.+..
T Consensus 72 ~~~~i~------~~Pt~~lf~~~~ 89 (114)
T cd02992 72 RDFGVT------GYPTLRYFPPFS 89 (114)
T ss_pred HhCCCC------CCCEEEEECCCC
Confidence 889987 589999996544
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=80.22 Aligned_cols=143 Identities=21% Similarity=0.263 Sum_probs=100.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-C-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEe----CC-
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-K-GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACS----TD- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~-gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is----~d- 427 (547)
.+|..+||..+.+ .+|+ +..++-|| + ++|+||+|. +-.||+-...+..++++.++|.+. ++-+|-|- .|
T Consensus 74 ~~G~~APns~vv~-l~g~-~~~~ildf~~g~RPLVlnFG-S~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDg 150 (237)
T PF00837_consen 74 KLGGPAPNSPVVT-LDGQ-RSCRILDFAKGNRPLVLNFG-SCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDG 150 (237)
T ss_pred eCCCCCCCCceEe-eCCC-cceeHHHhccCCCCeEEEcc-cccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCC
Confidence 3899999999999 8884 33899999 4 489999999 666999999999999999999862 33333331 11
Q ss_pred -----------ChhhHHHHhhccccCCCCCCcceeeecCC-ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 428 -----------SHFSHLAWCNIPRNKGGLGDMAIPILSDK-SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 428 -----------~~~~~~~~~~~~~~~~~~~~~~fp~l~D~-~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+...+++-++. ++.+..+...+|++.|. +....+.||... -..||| ++|+|.+.- ++-
T Consensus 151 W~~~~~~~~i~qh~sledR~~a-A~~l~~~~~~~pi~vD~mdN~~~~~YgA~P-------eRlyIi-~~gkv~Y~G-g~G 220 (237)
T PF00837_consen 151 WAFGNNPYEIPQHRSLEDRLRA-AKLLKEEFPQCPIVVDTMDNNFNKAYGALP-------ERLYII-QDGKVVYKG-GPG 220 (237)
T ss_pred ccCCCCceeecCCCCHHHHHHH-HHHHHhhCCCCCEEEEccCCHHHHHhCCCc-------ceEEEE-ECCEEEEeC-CCC
Confidence 11111111111 11112225788988875 588889999873 126777 499999988 566
Q ss_pred CCCCCHHHHHHHHHhh
Q psy224 496 PVGRSVDETLRLVQAF 511 (547)
Q Consensus 496 ~~~~~~~~il~~l~~l 511 (547)
+..-+++|+.+.|++.
T Consensus 221 P~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 221 PFGYSPEELREWLEKY 236 (237)
T ss_pred CCcCCHHHHHHHHHhc
Confidence 6666789998888764
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.6e-06 Score=68.40 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=64.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|| ++||++|....+.+.++.+++.. ++.++.|..+. +.++.++
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 63 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE----------------------------NPDIAAK 63 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHH
Confidence 568999999 99999999999999999988853 47777765432 3466788
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
|++. ..|+.+++ ++|++.....|.. +.+++.+.|+
T Consensus 64 ~~v~------~~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~l~ 98 (101)
T TIGR01068 64 YGIR------SIPTLLLF-KNGKEVDRSVGAL----PKAALKQLIN 98 (101)
T ss_pred cCCC------cCCEEEEE-eCCcEeeeecCCC----CHHHHHHHHH
Confidence 8987 58999999 6888887775544 3455555554
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.7e-06 Score=70.72 Aligned_cols=87 Identities=7% Similarity=0.071 Sum_probs=63.5
Q ss_pred CCeEEEEEEeCCCCCC--cH--HHHHHHHHHHHHH-hhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 384 GQYVVLFFYPLDFTFV--CP--TEIIAFSDRAEEF-KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~--C~--~~~~~l~~~~~~~-~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
.+++|++|| +.||++ |+ ...|.+.++..++ ++.++.++-|.+| .+.
T Consensus 27 ~~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d----------------------------~~~ 77 (120)
T cd03065 27 DVLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK----------------------------KDA 77 (120)
T ss_pred CceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC----------------------------CCH
Confidence 358888888 999987 99 5677777777776 2345666666554 357
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++++|+|. .+||.+++ ++|+++. +.|.. ..+.+.+.|+++
T Consensus 78 ~La~~~~I~------~iPTl~lf-k~G~~v~-~~G~~----~~~~l~~~l~~~ 118 (120)
T cd03065 78 KVAKKLGLD------EEDSIYVF-KDDEVIE-YDGEF----AADTLVEFLLDL 118 (120)
T ss_pred HHHHHcCCc------cccEEEEE-ECCEEEE-eeCCC----CHHHHHHHHHHH
Confidence 889999998 58999999 5999886 65554 345666666654
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.4e-06 Score=72.72 Aligned_cols=90 Identities=8% Similarity=0.057 Sum_probs=60.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.|+..+|+|+ ++|||+|+...|.|.++.++ .++.++-|..|...... ..+. +.-.++.+
T Consensus 22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~-~~~~----------------~~~~~~~~ 80 (122)
T TIGR01295 22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFE-MSSL----------------NDLTAFRS 80 (122)
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcC-cccH----------------HHHHHHHH
Confidence 3677899999 99999999999999999887 35778898887421100 0000 00034445
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.|++... ...+|+.+++ ++|+.+....|...
T Consensus 81 ~~~i~~~--i~~~PT~v~~-k~Gk~v~~~~G~~~ 111 (122)
T TIGR01295 81 RFGIPTS--FMGTPTFVHI-TDGKQVSVRCGSST 111 (122)
T ss_pred HcCCccc--CCCCCEEEEE-eCCeEEEEEeCCCC
Confidence 5554310 1247999999 69999999877643
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-06 Score=70.02 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=61.7
Q ss_pred CCCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDF--TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.|.++||.|| +.| ||.|....|.|.++.++|.++ +.++-|..| .++++
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid----------------------------~~~~l 75 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRA----------------------------DEQAL 75 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECC----------------------------CCHHH
Confidence 5678899999 997 999999999999999998642 444444433 34688
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+.+|+|. .+||.+++ ++|+++....|..+
T Consensus 76 a~~f~V~------sIPTli~f-kdGk~v~~~~G~~~ 104 (111)
T cd02965 76 AARFGVL------RTPALLFF-RDGRYVGVLAGIRD 104 (111)
T ss_pred HHHcCCC------cCCEEEEE-ECCEEEEEEeCccC
Confidence 8999998 58999999 59999999977553
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-06 Score=81.53 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=63.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+-+||||+|| ++||++|..-+|.|.++..+|+. .+.+.-|++ |..+.++.
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~----------------------------D~~p~vAa 91 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNC----------------------------DAEPMVAA 91 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecC----------------------------CcchhHHH
Confidence 5579999999 99999999999999999999863 244444444 34578889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+|||. ++|++|++ ++|+-+.-+.|..+
T Consensus 92 qfgiq------sIPtV~af-~dGqpVdgF~G~qP 118 (304)
T COG3118 92 QFGVQ------SIPTVYAF-KDGQPVDGFQGAQP 118 (304)
T ss_pred HhCcC------cCCeEEEe-eCCcCccccCCCCc
Confidence 99998 69999999 79999999976664
|
|
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-05 Score=68.72 Aligned_cols=101 Identities=9% Similarity=-0.068 Sum_probs=60.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHH-H--HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIA-F--SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~-l--~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++|+++|+|+ ++||+.|+..-+. + .++.+.+. +++.++-|..+...+..+. + ...
T Consensus 14 ~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~---~-----------------~~~ 71 (124)
T cd02955 14 EDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKI---Y-----------------MNA 71 (124)
T ss_pred cCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHH---H-----------------HHH
Confidence 6899999999 9999999977553 2 23333332 2455555544332221110 0 012
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC----CCCCHHHHHHHHHhh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP----VGRSVDETLRLVQAF 511 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~----~~~~~~~il~~l~~l 511 (547)
....|++. ..|+++++|++|++++...+-.. ....+.++++.++++
T Consensus 72 ~~~~~~~~------G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 72 AQAMTGQG------GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred HHHhcCCC------CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 22245665 58999999999999988833221 223577777777653
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-06 Score=73.19 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=60.6
Q ss_pred CCCCeEEEEEEeC-------CCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeec
Q psy224 382 YKGQYVVLFFYPL-------DFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILS 454 (547)
Q Consensus 382 ~~gk~~ll~f~~~-------~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~ 454 (547)
.+|++++|+|| | +|||+|+...|.+.++.++++. ++.++-|..|... .| .
T Consensus 19 ~~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~---~w------------------~ 75 (119)
T cd02952 19 HEGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP---YW------------------R 75 (119)
T ss_pred cCCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc---cc------------------c
Confidence 35899999999 9 9999999999999999998863 5788888776522 11 2
Q ss_pred CCChHHHHHhCCcccCCCcceeEEEEEcCCCcEE
Q psy224 455 DKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR 488 (547)
Q Consensus 455 D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~ 488 (547)
|.+..+...|++.. .+||.++++..++++
T Consensus 76 d~~~~~~~~~~I~~-----~iPT~~~~~~~~~l~ 104 (119)
T cd02952 76 DPNNPFRTDPKLTT-----GVPTLLRWKTPQRLV 104 (119)
T ss_pred CcchhhHhccCccc-----CCCEEEEEcCCceec
Confidence 34567888888861 389999996555544
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.25 E-value=4e-06 Score=68.96 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++++++|+|| ++||++|....+.+.++.+.++ ..++.++.|..+ .+.++.
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------------~~~~~~ 64 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT----------------------------ANNDLC 64 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc----------------------------chHHHH
Confidence 4568999999 9999999999999999998885 335666555432 246778
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++|++. ..|+.++++++|+....+.+.. +.+++.+
T Consensus 65 ~~~~i~------~~Pt~~~~~~~~~~~~~~~g~~----~~~~i~~ 99 (101)
T cd02961 65 SEYGVR------GYPTIKLFPNGSKEPVKYEGPR----TLESLVE 99 (101)
T ss_pred HhCCCC------CCCEEEEEcCCCcccccCCCCc----CHHHHHh
Confidence 889987 5899999998876666654333 4555544
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.4e-06 Score=69.72 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++++||+|| ++||++|....|.+.++.++|. ++.++-|..+ .. .+++.
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~----------------------------~~-~l~~~ 71 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAE----------------------------KA-FLVNY 71 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch----------------------------hh-HHHHh
Confidence 589999999 9999999999999999998874 3444433322 12 66788
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
|++. .+|+.+++ ++|+++.+..|..
T Consensus 72 ~~i~------~~Pt~~~f-~~G~~v~~~~G~~ 96 (113)
T cd02957 72 LDIK------VLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred cCCC------cCCEEEEE-ECCEEEEEEecHH
Confidence 8987 58998888 6899999997643
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-06 Score=80.16 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=62.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|| ++||++|+...|.+.+++++++. .+.+..|.+ |.+.++.++
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~----------------------------~~~~~l~~~ 101 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDA----------------------------TRALNLAKR 101 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecC----------------------------cccHHHHHH
Confidence 578999999 99999999999999999998864 244433322 223578889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|++. .+|+.++++ +|+++....|.. +.+++.+.+.+
T Consensus 102 ~~I~------~~PTl~~f~-~G~~v~~~~G~~----s~e~L~~fi~~ 137 (224)
T PTZ00443 102 FAIK------GYPTLLLFD-KGKMYQYEGGDR----STEKLAAFALG 137 (224)
T ss_pred cCCC------cCCEEEEEE-CCEEEEeeCCCC----CHHHHHHHHHH
Confidence 9998 589999997 788876553332 45565555444
|
|
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.9e-06 Score=69.41 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+|+++|+|| ++||++|+...+.+.++.++++. .++.++.+.++.+ ...+.+
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~~ 69 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---------------------------NKDLAK 69 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------chhhHH
Confidence 578999999 99999999999999999999873 3466666655431 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+|++. .+|+.++++++|+....+.+.
T Consensus 70 ~~~i~------~~P~~~~~~~~~~~~~~~~g~ 95 (105)
T cd02998 70 KYGVS------GFPTLKFFPKGSTEPVKYEGG 95 (105)
T ss_pred hCCCC------CcCEEEEEeCCCCCccccCCc
Confidence 89887 589999998877666666443
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.6e-06 Score=68.98 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=57.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++.++|+|| ++|||+|....|.+.++.+++. .+++.-|..|. +.+++++
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~----------------------------~~~l~~~ 70 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDE----------------------------DKEKAEK 70 (113)
T ss_pred CeEEEEEeC-CCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCc----------------------------CHHHHHH
Confidence 456777788 9999999999999999987752 45665554432 3578889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEE-EEecCCCCCCCHHHHHHHH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQ-ITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~-~~~~~~~~~~~~~~il~~l 508 (547)
|++. ..|+.++++.+|.... .+.| .+.+..+.+.++.|
T Consensus 71 ~~v~------~vPt~~i~~~g~~~~~~~~~G-~~~~~el~~~i~~i 109 (113)
T cd02975 71 YGVE------RVPTTIFLQDGGKDGGIRYYG-LPAGYEFASLIEDI 109 (113)
T ss_pred cCCC------cCCEEEEEeCCeecceEEEEe-cCchHHHHHHHHHH
Confidence 9998 5899999975332211 3434 33333444444443
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.8e-05 Score=67.29 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=60.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++++++|+|| ++||++|....|.|.++.+++. ++.++-|..+ ....+++
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~----------------------------~~~~l~~ 69 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAE----------------------------KAPFLVE 69 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcc----------------------------cCHHHHH
Confidence 3578999999 9999999999999999998874 3555554433 2456889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~ 497 (547)
+|++. ..|+.+++ ++|+++.+..+....
T Consensus 70 ~~~v~------~vPt~l~f-k~G~~v~~~~g~~~~ 97 (113)
T cd02989 70 KLNIK------VLPTVILF-KNGKTVDRIVGFEEL 97 (113)
T ss_pred HCCCc------cCCEEEEE-ECCEEEEEEECcccc
Confidence 99998 58999999 599999988665443
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6e-06 Score=90.07 Aligned_cols=95 Identities=14% Similarity=0.212 Sum_probs=67.8
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
..+||+++|+|| ++||++|+...+.. .++.++++ ++.++-+..+... +.+
T Consensus 471 ~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~~~ 523 (571)
T PRK00293 471 KGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------AED 523 (571)
T ss_pred HhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------hhh
Confidence 346899999999 99999999876653 45555554 5666666654311 124
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHhhH
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLR--QITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~--~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++.++|++. ..|+++++|++|+++ .++.|.. +.+++++.|++++
T Consensus 524 ~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G~~----~~~~f~~~L~~~~ 570 (571)
T PRK00293 524 VALLKHYNVL------GLPTILFFDAQGQEIPDARVTGFM----DAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHHcCCC------CCCEEEEECCCCCCcccccccCCC----CHHHHHHHHHHhc
Confidence 6788899988 589999999999995 4454444 4567777777654
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-05 Score=65.40 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=59.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|| ++||++|....|.+.++.++++. .+.++.+..+ .+.++.++
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~----------------------------~~~~~~~~ 67 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDAD----------------------------VHQSLAQQ 67 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECc----------------------------chHHHHHH
Confidence 567999999 99999999999999999988863 3566655442 24577889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
|++. ..|+.++++++.+....+.++ ++.+++.+
T Consensus 68 ~~i~------~~P~~~~~~~~~~~~~~~~g~----~~~~~l~~ 100 (103)
T cd03001 68 YGVR------GFPTIKVFGAGKNSPQDYQGG----RTAKAIVS 100 (103)
T ss_pred CCCC------ccCEEEEECCCCcceeecCCC----CCHHHHHH
Confidence 9987 589999997553444444333 34455543
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=83.22 Aligned_cols=93 Identities=11% Similarity=0.183 Sum_probs=68.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.+.++.++|+..++.++.|.+|.. ......+
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~--------------------------~~~~~~~ 422 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD--------------------------QKEFAKQ 422 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC--------------------------ccHHHHH
Confidence 6789999999 999999999999999999999877788888877641 0122346
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|+|. .+|+.+++.++..-...| . ...++++.++..++.+
T Consensus 423 ~~~I~------~~PTii~Fk~g~~~~~~Y--~-~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 423 ELQLG------SFPTILFFPKHSSRPIKY--P-SEKRDVDSLMSFVNLL 462 (463)
T ss_pred HcCCC------ccceEEEEECCCCCceeC--C-CCCCCHHHHHHHHHhh
Confidence 78887 589999996443222222 1 1346888988888765
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00018 Score=70.98 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecchhhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQDQAMRDA 353 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~~~~~~a 353 (547)
.+++++++++..++..+-...-. ..+..++++|+.+||++++|+.+++.+++.+ +..+.+++.+....|
T Consensus 194 ~~eDIaasl~~~v~~~I~~lA~~-~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gA 265 (277)
T PRK13317 194 TSSDILAGVIGLVGEVITTLSIQ-AAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGA 265 (277)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHH
Confidence 79999999999998888776431 1122457899999965799999999999999 688888888776554
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.5e-06 Score=77.38 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=74.3
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.-.+.++.+++.|++|| .+.||+|..+.|.|+.+.++| |+.|+.||.|..... .||-..
T Consensus 112 ~~~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~----------------~fp~~~- 170 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIP----------------SFPNPR- 170 (215)
T ss_pred HHHHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCc----------------CCCCCC-
Confidence 34566777889999999 889999999999999999998 899999999863211 222211
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCC-cEEEEEecCCCCCCCHHHHHH
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQ-NLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G-~v~~~~~~~~~~~~~~~~il~ 506 (547)
.+..+++.||+. ..|++||+++++ ++.-...|..+ .+++++
T Consensus 171 ~~~g~~~~l~v~------~~Pal~Lv~~~~~~~~pv~~G~~s----~~~L~~ 212 (215)
T PF13728_consen 171 PDPGQAKRLGVK------VTPALFLVNPNTKKWYPVSQGFMS----LDELED 212 (215)
T ss_pred CCHHHHHHcCCC------cCCEEEEEECCCCeEEEEeeecCC----HHHHHH
Confidence 267788899997 589999999988 44444445553 455543
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.8e-05 Score=60.69 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=57.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|| ++||+.|....+.+.++.++ ..++.++.+..+. +.++.+.
T Consensus 10 ~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------~~~~~~~ 58 (93)
T cd02947 10 AKPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------NPELAEE 58 (93)
T ss_pred CCcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------ChhHHHh
Confidence 388999999 99999999999999998877 4467777776543 3456677
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
|++. ..|+.++++ +|+++..+.+..
T Consensus 59 ~~v~------~~P~~~~~~-~g~~~~~~~g~~ 83 (93)
T cd02947 59 YGVR------SIPTFLFFK-NGKEVDRVVGAD 83 (93)
T ss_pred cCcc------cccEEEEEE-CCEEEEEEecCC
Confidence 8887 489999885 778888886544
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.9e-05 Score=76.33 Aligned_cols=105 Identities=18% Similarity=0.296 Sum_probs=76.3
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.-.++++..++.|++|| .+.||+|....|.|+.+.++| |+.|+.||.|.... -.||-..
T Consensus 142 ~~~i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~----------------p~fp~~~- 200 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLI----------------PGLPNSR- 200 (256)
T ss_pred HHHHHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCC----------------CCCCCcc-
Confidence 34567777889999999 899999999999999999998 89999999986311 1133221
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHH
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~ 507 (547)
.+...++.+|+. ..|++||++++ ++..-.-+|..+.....+.++..
T Consensus 201 ~d~gqa~~l~v~------~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 201 SDSGQAQHLGVK------YFPALYLVNPKSQKMSPLAYGFISQDELKERILNV 247 (256)
T ss_pred CChHHHHhcCCc------cCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHH
Confidence 256778899997 48999999999 55555555666543333344433
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.4e-05 Score=77.02 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=54.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh-----CCceEEecchhhhh
Q psy224 278 ITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY-----GLQLIVEQDQAMRD 352 (547)
Q Consensus 278 l~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l-----~~~v~~~~~~~~~~ 352 (547)
+.... ++++++.++..+++-.+...+.. +... -++|+++||. ++|+.+.+.+.+.+ +.+|.+++.+..+.
T Consensus 350 la~G~-~reDIaAGL~~SIA~Rv~s~l~r--~~~i-~~~VvftGGv-A~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~G 424 (432)
T TIGR02259 350 LALGD-KREDILAGLHRAIILRAISIISR--SGGI-TDQFTFTGGV-AKNEAAVKELRKLIKENYGEVQINIDPDSIYTG 424 (432)
T ss_pred HHCCC-CHHHHHHHHHHHHHHHHHHHHhc--ccCC-CCCEEEECCc-cccHHHHHHHHHHHccccCCCeEecCCCccHHH
Confidence 34444 89999999999999887766542 2111 3589999996 99999999999999 46788887777665
Q ss_pred h
Q psy224 353 A 353 (547)
Q Consensus 353 a 353 (547)
|
T Consensus 425 A 425 (432)
T TIGR02259 425 A 425 (432)
T ss_pred H
Confidence 4
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.1e-05 Score=69.27 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=58.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++++||+|| ++||++|....|.|.++..+|. .+.++-|..+. . .++..
T Consensus 83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~----------------------------~-~l~~~ 130 (175)
T cd02987 83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA----------------------------T-GASDE 130 (175)
T ss_pred CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc----------------------------h-hhHHh
Confidence 468999999 9999999999999999998875 46666665542 1 45567
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
|++. .+|+.+|+ ++|+++....+..
T Consensus 131 f~v~------~vPTllly-k~G~~v~~~vG~~ 155 (175)
T cd02987 131 FDTD------ALPALLVY-KGGELIGNFVRVT 155 (175)
T ss_pred CCCC------CCCEEEEE-ECCEEEEEEechH
Confidence 8877 58999999 6999999887654
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.4e-05 Score=75.19 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=75.0
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
-.++++..++.|++|| .+.||+|....|.|+.+.++| |+.|+.||.|.... -.||.-. .
T Consensus 136 ~~i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~----------------p~fp~~~-~ 194 (248)
T PRK13703 136 QAIAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVIN----------------PLLPDSR-T 194 (248)
T ss_pred HHHHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCC----------------CCCCCCc-c
Confidence 3467777789999999 899999999999999999998 89999999986321 1233211 3
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCC-cEEEEEecCCCCCCCHHHHHHHHH
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQ-NLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G-~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+...++.+|+. ..|++||++++. ++.-..+|..+ .+++.+-+.
T Consensus 195 d~gqa~~l~v~------~~PAl~Lv~~~t~~~~pv~~G~iS----~deL~~Ri~ 238 (248)
T PRK13703 195 DQGQAQRLGVK------YFPALMLVDPKSGSVRPLSYGFIT----QDDLAKRFL 238 (248)
T ss_pred ChhHHHhcCCc------ccceEEEEECCCCcEEEEeeccCC----HHHHHHHHH
Confidence 44555889997 489999999985 66656666664 344444433
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.1e-05 Score=79.63 Aligned_cols=92 Identities=13% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.++|+..++.++.|.+|.. +..+++
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---------------------------~~~la~ 415 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---------------------------QKEFAK 415 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---------------------------chHHHH
Confidence 5789999999 999999999999999999999877788888776621 123343
Q ss_pred -HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 -SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 -~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|+|. .+||.+++.+...-...+ ....++++.++..++++
T Consensus 416 ~~~~I~------~~PTil~f~~g~~~~v~Y---~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 416 QELQLG------SFPTILLFPKNSSRPIKY---PSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hhCCCc------eeeEEEEEeCCCCCeeec---CCCCcCHHHHHHHHHHh
Confidence 58887 589999996544322222 12356888998888875
|
|
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=57.85 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=54.2
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
.|..|| ++|||+|....+.+.++.++++. .+.++-|..+. +.+..++|++
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~~v 51 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME----------------------------NPQKAMEYGI 51 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc----------------------------CHHHHHHcCC
Confidence 467888 99999999999999999988853 35666554432 2345678998
Q ss_pred cccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 467 ~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
. .+|+.++ +|+. .+.|.. +.+++.+.|++
T Consensus 52 ~------~vPt~~~---~g~~--~~~G~~----~~~~l~~~l~~ 80 (82)
T TIGR00411 52 M------AVPAIVI---NGDV--EFIGAP----TKEELVEAIKK 80 (82)
T ss_pred c------cCCEEEE---CCEE--EEecCC----CHHHHHHHHHh
Confidence 7 4899775 5664 343433 34566666554
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.6e-05 Score=62.83 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTD 427 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d 427 (547)
+++++|+|| ++||++|....|.+.++.+.++. ..+.+..|.++
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 588999999 99999999999999999999875 34556555543
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.2e-05 Score=63.47 Aligned_cols=79 Identities=15% Similarity=0.288 Sum_probs=65.3
Q ss_pred HHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC---------------
Q psy224 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--------------- 471 (547)
Q Consensus 407 l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--------------- 471 (547)
|.+..+++++.|+++++|++.+++..++|++.. .+++|++.|++.++.+++|+.....
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~ 74 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNI 74 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHH
Confidence 667788999999999999999987799999875 8999999999999999999775210
Q ss_pred -------C----------cceeEEEEEcCCCcEEEEEe
Q psy224 472 -------G----------IPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 472 -------g----------~~~p~~~lid~~G~v~~~~~ 492 (547)
+ .....+||+|++|+|++.|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 0 11235899999999999984
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.7e-05 Score=79.90 Aligned_cols=91 Identities=10% Similarity=0.146 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC-cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN-TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.||+++|+|| ++||++|+...|.+.++.+.+++.+ +.++-+..+. +...+
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~----------------------------~~~~~ 424 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA----------------------------NETPL 424 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC----------------------------Cccch
Confidence 5799999999 9999999999999999999887543 4555444432 22345
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.|++. .+|+.+++++++++...+.|.. +.+++.+.|++..
T Consensus 425 ~~~~v~------~~Pt~~~~~~~~~~~~~~~G~~----~~~~l~~~i~~~~ 465 (477)
T PTZ00102 425 EEFSWS------AFPTILFVKAGERTPIPYEGER----TVEGFKEFVNKHA 465 (477)
T ss_pred hcCCCc------ccCeEEEEECCCcceeEecCcC----CHHHHHHHHHHcC
Confidence 677776 5899999998887755664443 5677777777544
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00074 Score=67.49 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=57.6
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCc-EEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 278 ITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGIN-RIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 278 l~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~-~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
+.... +++++..++..+++.++... .+++..++ .|++.||- ++|..+.+.+.+.+++.|.+++.+..|.|
T Consensus 311 ~~~G~-~~EdI~AGl~~Sv~~~v~~~----~~~~~~i~~~iv~~GGv-a~n~av~~ale~~lg~~V~vP~~~ql~GA 381 (396)
T COG1924 311 LAEGA-SPEDILAGLAYSVAENVAEK----VIKRVDIEEPIVLQGGV-ALNKAVVRALEDLLGRKVIVPPYAQLMGA 381 (396)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHHHH----HhhccCCCCCEEEECcc-hhhHHHHHHHHHHhCCeeecCCccchhhH
Confidence 45555 89999999999998877662 13454544 49999995 99999999999999999999999998876
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00021 Score=66.97 Aligned_cols=65 Identities=9% Similarity=-0.043 Sum_probs=52.3
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
..+|++|| ++|||+|....+.|.++.++|. .++++-|..| |
T Consensus 18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d------------------------------------~ 58 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA------------------------------------D 58 (204)
T ss_pred CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc------------------------------------c
Confidence 45788999 9999999999999999999885 4666555321 7
Q ss_pred CCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 465 GVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 465 ~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+|. .+|+++++ ++|+++.+..|..
T Consensus 59 ~V~------~vPtfv~~-~~g~~i~r~~G~~ 82 (204)
T PTZ00062 59 ANN------EYGVFEFY-QNSQLINSLEGCN 82 (204)
T ss_pred Ccc------cceEEEEE-ECCEEEeeeeCCC
Confidence 877 68999999 5999999986543
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=62.66 Aligned_cols=93 Identities=9% Similarity=0.090 Sum_probs=54.3
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHH--HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFS--DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~--~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
-++|+++|+|+ +.||++|...-..+- .-..++-+++ ++.|..+.... +. +.. +
T Consensus 21 ~~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~--Fv~V~l~~d~t-----d~--------~~~-~-------- 75 (130)
T cd02960 21 KSNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQED--FIMLNLVHETT-----DK--------NLS-P-------- 75 (130)
T ss_pred HCCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhC--eEEEEEEeccC-----CC--------CcC-c--------
Confidence 36899999999 999999988766532 1112222223 34444432101 00 111 0
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV------GRSVDETLRLVQA 510 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~------~~~~~~il~~l~~ 510 (547)
.+ ..+|+++++|++|+++....|..+. ..+++.+.+-.++
T Consensus 76 ----~g-------~~vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~ 121 (130)
T cd02960 76 ----DG-------QYVPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKK 121 (130)
T ss_pred ----cC-------cccCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHH
Confidence 11 1479999999999999888665432 2255566555443
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols [] | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.6e-05 Score=52.40 Aligned_cols=25 Identities=44% Similarity=0.925 Sum_probs=22.3
Q ss_pred hhHhhhhcCccccCCccCCCccccc
Q psy224 510 AFQFVAEHGEVCPAGWKPGSKTMKA 534 (547)
Q Consensus 510 ~l~~~~~~~~~~~~~w~~~~~~~~~ 534 (547)
+||.+.++++.||+||++|+++|++
T Consensus 1 ALQ~~d~~~v~tPanW~pGd~~ivp 25 (40)
T PF10417_consen 1 ALQFTDKHGVATPANWKPGDDVIVP 25 (40)
T ss_dssp HHHHHHHHSSBBCTTTCTTSGEBE-
T ss_pred CceehhhhCcccCcCCCCCCCeEcC
Confidence 4788999999999999999999965
|
The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C .... |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00025 Score=62.32 Aligned_cols=141 Identities=12% Similarity=0.181 Sum_probs=87.3
Q ss_pred cCCCCCCeeecc----ccCCc---eeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHH-HhhCCcEEEEE-eCC
Q psy224 357 LEKPAPEFEGQA----VVNGQ---FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEE-FKKINTQVIAC-STD 427 (547)
Q Consensus 357 ~g~~~p~~~l~~----~~~G~---~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~-~~~~~~~vi~i-s~d 427 (547)
+|.++|.+++.+ .++|+ .++.+.+.+.||+.||... |--...-....|-+.++.+. |.....+..+| +.|
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 677888887765 12221 2345556678998877766 33332222224444455444 55555665555 343
Q ss_pred C-h----hhHHHHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCH
Q psy224 428 S-H----FSHLAWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSV 501 (547)
Q Consensus 428 ~-~----~~~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~ 501 (547)
+ . .-.+...++.+ +.+++. ++.|.++.+.++|++... .-+.+|+|++|+|++...|..++. ++
T Consensus 82 DAi~gt~~fVrss~e~~k-----k~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~Ls~~-Ev 150 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSK-----KEFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGALSPA-EV 150 (160)
T ss_pred cccccchHHHHHHHHHhh-----hhCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCCCCHH-HH
Confidence 2 1 12233333321 156777 578999999999998742 356889999999999998888755 57
Q ss_pred HHHHHHHH
Q psy224 502 DETLRLVQ 509 (547)
Q Consensus 502 ~~il~~l~ 509 (547)
+++++.|+
T Consensus 151 ~qVi~Ll~ 158 (160)
T PF09695_consen 151 QQVIALLK 158 (160)
T ss_pred HHHHHHHh
Confidence 77777765
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00028 Score=75.54 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=65.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++++++|+|| ++||++|....|.+.++++.+++.+ +.++.|.++ .+.++
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l 67 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT----------------------------EEKDL 67 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC----------------------------CcHHH
Confidence 4678999999 9999999999999999999988665 555555443 23578
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL-RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
++.|++. .+|+.+++ ++|+. +..+.|.. +.+++.+.++..
T Consensus 68 ~~~~~i~------~~Pt~~~~-~~g~~~~~~~~g~~----~~~~l~~~i~~~ 108 (462)
T TIGR01130 68 AQKYGVS------GYPTLKIF-RNGEDSVSDYNGPR----DADGIVKYMKKQ 108 (462)
T ss_pred HHhCCCc------cccEEEEE-eCCccceeEecCCC----CHHHHHHHHHHh
Confidence 8899998 58988888 57776 56665543 345555555543
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00032 Score=65.44 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=62.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....+.|.+++.+|. .+.++-|..+. ...
T Consensus 101 ~~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~-------------------------------~~~ 146 (192)
T cd02988 101 KDTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ-------------------------------CIP 146 (192)
T ss_pred CCCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH-------------------------------hHh
Confidence 3568999999 9999999999999999999985 46666655431 124
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC---CCHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG---RSVDETLRLV 508 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~---~~~~~il~~l 508 (547)
.|++. ..|+.+++ ++|+++...+|..+.+ ...+++-..|
T Consensus 147 ~~~i~------~lPTlliy-k~G~~v~~ivG~~~~gg~~~~~~~lE~~L 188 (192)
T cd02988 147 NYPDK------NLPTILVY-RNGDIVKQFIGLLEFGGMNTTMEDLEWLL 188 (192)
T ss_pred hCCCC------CCCEEEEE-ECCEEEEEEeCchhhCCCCCCHHHHHHHH
Confidence 67766 48999999 6999999998765443 2344444444
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00045 Score=54.11 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=24.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHh
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFK 415 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~ 415 (547)
.|.|| ++|||+|....|.+.++.+++.
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~ 28 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELG 28 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcC
Confidence 37889 9999999999999999998874
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0004 Score=59.06 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=61.3
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHH-HH--HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIA-FS--DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~-l~--~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
+.-++|+++|+|+ +.||+.|...... ++ ++.+.+.+ ++.++.+..+.+ .
T Consensus 13 Ak~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~--------------------------e 64 (114)
T cd02958 13 AKSEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSS--------------------------E 64 (114)
T ss_pred HHhhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCc--------------------------c
Confidence 3336899999999 9999999876443 21 22222222 333333333221 1
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDD-KQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~-~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
..++++.|++. ..|+.+++|+ +|+++....|..+ .++.++.|++.
T Consensus 65 ~~~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~~~----~~~f~~~L~~~ 110 (114)
T cd02958 65 GQRFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGNIT----PEDLLSQLIEF 110 (114)
T ss_pred HHHHHHHhCcc------CCCeEEEEeCccCcEeEEEcCCCC----HHHHHHHHHHH
Confidence 24566778876 5899999999 8999999976663 56777776654
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00047 Score=64.49 Aligned_cols=124 Identities=11% Similarity=0.135 Sum_probs=85.3
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC---cEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN---TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~---~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.-.+.+.+|+|+||-+. .++|..|..++.+|..|..+|++.| +.++.|+.........+.+...+. ...||+
T Consensus 18 ~~pm~~~~G~VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~----~~~ipV 92 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRV----SEHIPV 92 (238)
T ss_pred chHhhhcCCcEEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhC----CCCCce
Confidence 45688889999999999 7799999999999999999998765 577777765433322221111111 455999
Q ss_pred ec-C-CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 453 LS-D-KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 453 l~-D-~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+- | ....++..++-.+++ +||+|+-|++.+...-+.+.- ...-+.++|+...
T Consensus 93 yqq~~~q~dvW~~L~G~kdD-------~~iyDRCGrL~~~i~~P~S~l-~~~~ve~Ai~~ty 146 (238)
T PF04592_consen 93 YQQDENQPDVWELLNGSKDD-------FLIYDRCGRLTYHIPLPYSFL-QFPYVEAAIKSTY 146 (238)
T ss_pred ecCCccccCHHHHhCCCcCc-------EEEEeccCcEEEEecCcHHHh-cCHHHHHHHHHHH
Confidence 85 3 347888888877544 899999999999984343322 2334445555433
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0009 Score=63.89 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=58.4
Q ss_pred CCCCCeEEEEEEeC---CCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 381 QYKGQYVVLFFYPL---DFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 381 ~~~gk~~ll~f~~~---~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
..++...++.|+ + +|||+|....|.+.++.+++. ++++..+..|. |.+
T Consensus 16 ~~~~~~~i~~f~-~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~--------------------------~~~ 66 (215)
T TIGR02187 16 ELKNPVEIVVFT-DNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDT--------------------------PED 66 (215)
T ss_pred hcCCCeEEEEEc-CCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCC--------------------------ccc
Confidence 345555677787 7 999999999999999998874 35555555543 235
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCC
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDL 495 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~ 495 (547)
.++++.|++. ..|+.++++ +|+.+ .++.|..
T Consensus 67 ~~l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G~~ 98 (215)
T TIGR02187 67 KEEAEKYGVE------RVPTTIILE-EGKDGGIRYTGIP 98 (215)
T ss_pred HHHHHHcCCC------ccCEEEEEe-CCeeeEEEEeecC
Confidence 6889999998 589999996 67776 4676644
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00038 Score=74.90 Aligned_cols=89 Identities=16% Similarity=0.285 Sum_probs=64.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+++.++|.|| ++||++|....|.+.++.+.+++.+ +.+.-|.+ +.+.++
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~----------------------------~~~~~l 98 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA----------------------------TEEMEL 98 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC----------------------------CCCHHH
Confidence 5788999999 9999999999999999988886543 34443332 234678
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++|++. .+|+.++++.+ +.+ .+.|. ++.+++.+.+++..
T Consensus 99 ~~~~~i~------~~Pt~~~~~~g-~~~-~y~g~----~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 99 AQEFGVR------GYPTIKFFNKG-NPV-NYSGG----RTADGIVSWIKKLT 138 (477)
T ss_pred HHhcCCC------cccEEEEEECC-ceE-EecCC----CCHHHHHHHHHHhh
Confidence 8999987 58999999755 444 55343 35667777766543
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0031 Score=64.62 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC-cEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGI-NRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~-~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
++++++.++..+++-.+... .+++.++ ++|+++||. ++|+.+.+.+.+.++.++.+++.+..+.|
T Consensus 329 ~~eDIaAGl~~SIa~rv~~~----l~~~~~i~~~VvftGGv-a~N~gvv~ale~~Lg~~iivPe~pq~~GA 394 (404)
T TIGR03286 329 SPEDVAAAACHSVAEQVYEQ----QLQEIDVREPVILVGGT-SLIEGLVKALGDLLGIEVVVPEYSQYIGA 394 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhhcCCCCCcEEEECCh-hhhHHHHHHHHHHhCCcEEECCcccHHHH
Confidence 89999999999999888752 1344554 469999996 99999999999999999999999888765
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00044 Score=63.47 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=102.6
Q ss_pred cHHHHHHHHHHhCCceEEecchhhhhhh--hccCCC-CCCeeeccccCCceeeEeccCC-CCCeEEEE--EEe----CCC
Q psy224 327 NHILQHYIERIYGLQLIVEQDQAMRDAS--YALEKP-APEFEGQAVVNGQFKNIKLSQY-KGQYVVLF--FYP----LDF 396 (547)
Q Consensus 327 ~~~~~q~~Ad~l~~~v~~~~~~~~~~a~--~~~g~~-~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~--f~~----~~~ 396 (547)
+..|...--+.|.+........+..++. .+++-. --++.++. .+| +.+|+|+ .||-.||. |+. ..-
T Consensus 15 ~e~w~~AR~~lL~kEkeLtR~rd~vaaeRR~LPw~~V~K~Y~Fe~-~~G---~~sLadLF~grsqLIvYhfmF~P~~~~~ 90 (247)
T COG4312 15 REEWLAAREALLAKEKELTRARDAVAAERRALPWGEVDKDYVFET-ENG---KKSLADLFGGRSQLIVYHFMFGPGWDHG 90 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceecceeEeec-CCc---chhHHHHhCCCceEEEEEEecCCCccCC
Confidence 3455555555555444433333222211 112221 12455555 667 7899998 77644433 322 347
Q ss_pred CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC----C
Q psy224 397 TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET----G 472 (547)
Q Consensus 397 cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~----g 472 (547)
||.|..-+..+.-....+...++.+++||--+.+++..+.+.. ++.||.+++.+..+-+.|.+.+.+. |
T Consensus 91 C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm-------GW~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G 163 (247)
T COG4312 91 CPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM-------GWQFPWVSSTDSDFNRDFQVSFTEDQQAPG 163 (247)
T ss_pred CCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc-------CCcceeEeccCcccccccccccchhhccCc
Confidence 9999999999988888888899999999999999999998876 9999999999999999998865432 1
Q ss_pred -------------ccee--EEEEEcCCCcEEEEE
Q psy224 473 -------------IPYR--GLFIIDDKQNLRQIT 491 (547)
Q Consensus 473 -------------~~~p--~~~lid~~G~v~~~~ 491 (547)
.-.| +.|.=+.+|+|-+.+
T Consensus 164 ~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty 197 (247)
T COG4312 164 VVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTY 197 (247)
T ss_pred eeEeecccCCCccccCCCeeEEEEcCCCcccccc
Confidence 1111 245447788888777
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0029 Score=62.28 Aligned_cols=68 Identities=19% Similarity=0.374 Sum_probs=52.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC-cEEEeeCCchhhcHHHHHHHHHHhCCceE-Eecchhhhhh
Q psy224 279 TIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGI-NRIIGIGSCLTRNHILQHYIERIYGLQLI-VEQDQAMRDA 353 (547)
Q Consensus 279 ~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~-~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~-~~~~~~~~~a 353 (547)
.... .++++++++..+++-.+...+ +..++ ++|+++||. ++|+.+.+.+.+.++.++. .+..+..+.|
T Consensus 210 ~~G~-~~edI~aGl~~sia~rv~~~~-----~~~~i~~~v~~~GGv-a~N~~l~~al~~~Lg~~v~~~p~~p~~~GA 279 (293)
T TIGR03192 210 KAGY-TKNMVIAAYCQAMAERVVSLL-----ERIGVEEGFFITGGI-AKNPGVVKRIERILGIKAVDTKIDSQIAGA 279 (293)
T ss_pred HCCC-CHHHHHHHHHHHHHHHHHHHh-----cccCCCCCEEEECcc-cccHHHHHHHHHHhCCCceeCCCCccHHHH
Confidence 4444 899999999999997764433 34453 579999995 9999999999999999988 4555666554
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=53.37 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=51.7
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
+.++++.+.|..|+ +.||++|+...+.+.++.+++. ++++..+..+ ...
T Consensus 7 ~~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~----------------------------~~~ 55 (89)
T cd03026 7 IRRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA----------------------------LFQ 55 (89)
T ss_pred HHhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH----------------------------hCH
Confidence 34667777888888 9999999999888888886653 3444444332 235
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEE
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
+.+..|++. ..|++++ +|++++.
T Consensus 56 e~a~~~~V~------~vPt~vi---dG~~~~~ 78 (89)
T cd03026 56 DEVEERGIM------SVPAIFL---NGELFGF 78 (89)
T ss_pred HHHHHcCCc------cCCEEEE---CCEEEEe
Confidence 677899998 5899864 6887764
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0015 Score=49.61 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=42.8
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
.|..|+ ++|||+|....+.|+++.+++ .++++.-+..+ .++++++.||+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~----------------------------~~~~l~~~~~i 50 (67)
T cd02973 2 NIEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAA----------------------------EFPDLADEYGV 50 (67)
T ss_pred EEEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc----------------------------cCHhHHHHcCC
Confidence 477888 999999999988888886543 24555444332 23456778888
Q ss_pred cccCCCcceeEEEEEcCCCcEEEE
Q psy224 467 LNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 467 ~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
. ..|+.+ + +|++++.
T Consensus 51 ~------~vPti~-i--~~~~~~~ 65 (67)
T cd02973 51 M------SVPAIV-I--NGKVEFV 65 (67)
T ss_pred c------ccCEEE-E--CCEEEEe
Confidence 6 478865 4 4566543
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0013 Score=48.25 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
|+.|| ..||+.|....+.+.++ ++...+++++.++.+.....
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 42 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPAL 42 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHH
Confidence 47788 99999999999999998 56667899999998875443
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0034 Score=48.90 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=47.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCc
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVL 467 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~ 467 (547)
|++|+ ++||++|+...|.|.++. +.++ . +-.|...+++++|++.
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~------------------------~----vd~~~~~~l~~~~~v~ 45 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVE-------YTYV------------------------D----VDTDEGVELTAKHHIR 45 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHHh-------heEE------------------------e----eeCCCCHHHHHHcCCc
Confidence 68899 999999999888775431 1111 1 1124567899999998
Q ss_pred ccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 468 NEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 468 ~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+|+.+ +|+.+....|.. +++.++.+.|
T Consensus 46 ------~~PT~~----~g~~~~~~~G~~---~~~~~l~~~~ 73 (75)
T PHA02125 46 ------SLPTLV----NTSTLDRFTGVP---RNVAELKEKL 73 (75)
T ss_pred ------eeCeEE----CCEEEEEEeCCC---CcHHHHHHHh
Confidence 589865 577777775532 2455555544
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00049 Score=59.80 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=46.7
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
++.+..+..++.|. .+|||.|...+|.|.++.+.-. ++++=.++.|. +.
T Consensus 36 l~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~----------------------------~~ 84 (129)
T PF14595_consen 36 LKSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDE----------------------------NK 84 (129)
T ss_dssp HHT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHH----------------------------HH
T ss_pred HHhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecC----------------------------Ch
Confidence 44455667899999 9999999999999999998754 44443333322 12
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
++..+|-. ..+..+|+.+++|++|+++.++ ++.+
T Consensus 85 el~~~~lt---~g~~~IP~~I~~d~~~~~lg~w-gerP 118 (129)
T PF14595_consen 85 ELMDQYLT---NGGRSIPTFIFLDKDGKELGRW-GERP 118 (129)
T ss_dssp HHTTTTTT----SS--SSEEEEE-TT--EEEEE-ESS-
T ss_pred hHHHHHHh---CCCeecCEEEEEcCCCCEeEEE-cCCC
Confidence 22222221 1123589999999999999999 4443
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0026 Score=52.65 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=51.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.|+++++.|+ +.||++|....+.+.++.++|+. .+.++-|..+. ...+++
T Consensus 11 ~~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~----------------------------~~~~~~ 60 (103)
T cd02982 11 SGKPLLVLFY-NKDDSESEELRERFKEVAKKFKG-KLLFVVVDADD----------------------------FGRHLE 60 (103)
T ss_pred cCCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHh----------------------------hHHHHH
Confidence 3789999999 99999999999999999999974 35666554432 234667
Q ss_pred HhCCcccCCCcceeEEEEEcCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDK 484 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~ 484 (547)
.||+... ..|+.++++..
T Consensus 61 ~~~i~~~----~~P~~~~~~~~ 78 (103)
T cd02982 61 YFGLKEE----DLPVIAIINLS 78 (103)
T ss_pred HcCCChh----hCCEEEEEecc
Confidence 7777621 37998888763
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.051 Score=53.52 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhh-cCCcEEEeeCCchhhcHHHHHHHHHHhC---CceEEecchhhhhh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHR-SGINRIIGIGSCLTRNHILQHYIERIYG---LQLIVEQDQAMRDA 353 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g~~~I~~~GG~~~k~~~~~q~~Ad~l~---~~v~~~~~~~~~~a 353 (547)
.+++|++++++..++.++-+..- .... .+.++|+..||-+..++..++.++..+. ..+..++..+...|
T Consensus 201 ~~~eDiAaSLl~mV~~nIg~lA~--~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gA 273 (279)
T TIGR00555 201 FSPEDIAASLLGLIGNNIGQIAY--LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGA 273 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHH
Confidence 47999999999999998877654 1222 4588999999965789999999988776 44666666666544
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >KOG0908|consensus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0024 Score=60.00 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=58.2
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
+.--+|.++|.|. ++||.+|..-.|.++.+.++|. +..++=|.+|. -+.
T Consensus 17 s~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~----------------------------c~~ 65 (288)
T KOG0908|consen 17 SAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE----------------------------CRG 65 (288)
T ss_pred hccCceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH----------------------------hhc
Confidence 3334689999999 9999999999999999999995 55665554433 234
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
++..+||. +.||++++ ++|.-+....|
T Consensus 66 taa~~gV~------amPTFiff-~ng~kid~~qG 92 (288)
T KOG0908|consen 66 TAATNGVN------AMPTFIFF-RNGVKIDQIQG 92 (288)
T ss_pred hhhhcCcc------cCceEEEE-ecCeEeeeecC
Confidence 55678887 68998888 68888877743
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0037 Score=66.86 Aligned_cols=89 Identities=10% Similarity=0.219 Sum_probs=63.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.++.++|+|| ++||++|....|.+.++.++++.. ++.++.|.++.. ++
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-----------------------------~~ 412 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-----------------------------DV 412 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-----------------------------cc
Confidence 4789999999 999999999999999999999862 577777765421 01
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL-RQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.. |++. .+|+.++++++++. ...+.| .++.+++++.|++..
T Consensus 413 ~~-~~i~------~~Pt~~~~~~~~~~~~~~~~g----~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 413 PP-FEVE------GFPTIKFVPAGKKSEPVPYDG----DRTLEDFSKFIAKHA 454 (462)
T ss_pred CC-CCcc------ccCEEEEEeCCCCcCceEecC----cCCHHHHHHHHHhcC
Confidence 11 5555 48999999766653 233333 235778888877544
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0063 Score=52.42 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH-H--HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF-S--DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l-~--~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+|.++|+|+ +.||+.|......+ . ++.+.+ ++++.++.+..+.. ...+
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~--------------------------eg~~ 77 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTS--------------------------EGQR 77 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCCh--------------------------hHHH
Confidence 5789999999 99999998875542 1 222222 22444444433321 1256
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCC-----cEEEEEecCCCCCCCHHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQ-----NLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G-----~v~~~~~~~~~~~~~~~~il~~l 508 (547)
+++.|++. ..|+..++|++| +++....|.. +.++++..|
T Consensus 78 l~~~~~~~------~~P~~~~l~~~~g~~~~~~~~~~~G~~----~~~~l~~~l 121 (122)
T smart00594 78 VSQFYKLD------SFPYVAIVDPRTGQRVIEWVGVVEGEI----SPEELMTFL 121 (122)
T ss_pred HHHhcCcC------CCCEEEEEecCCCceeEEEeccccCCC----CHHHHHHhh
Confidence 77888887 489999999997 2333333333 467777654
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.015 Score=55.43 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=51.7
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+..+.+.|+.|| ++|||+|+...+.++++..+.. .+.+.-| | .|.+.++
T Consensus 130 ~~~~pv~I~~F~-a~~C~~C~~~~~~l~~l~~~~~--~i~~~~v--D--------------------------~~~~~~~ 178 (215)
T TIGR02187 130 SLDEPVRIEVFV-TPTCPYCPYAVLMAHKFALAND--KILGEMI--E--------------------------ANENPDL 178 (215)
T ss_pred hcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHhcC--ceEEEEE--e--------------------------CCCCHHH
Confidence 344455666688 9999999987777766665421 2332222 1 1235778
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
++.|++. .+|+.++. ++|+. +.|.. ..+++.+.|.
T Consensus 179 ~~~~~V~------~vPtl~i~-~~~~~---~~G~~----~~~~l~~~l~ 213 (215)
T TIGR02187 179 AEKYGVM------SVPKIVIN-KGVEE---FVGAY----PEEQFLEYIL 213 (215)
T ss_pred HHHhCCc------cCCEEEEe-cCCEE---EECCC----CHHHHHHHHH
Confidence 8899998 58998765 56753 44433 2345555554
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.16 Score=53.61 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhh--hhhhcC-----CcEEEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRS--VLHRSG-----INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~--~l~~~g-----~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
...+++++-+|.+.-.+++.++.. .+++.+ +..|+++||+ ++-+.+.+++.+.++.|+.+..
T Consensus 292 ~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~-a~lpgi~e~~~~~f~~~vri~~ 360 (420)
T PRK09472 292 TLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGA-AQIEGLAACAQRVFHTQVRIGA 360 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCch-hccccHHHHHHHHhCCCeEEeC
Confidence 356778888888877777766421 123333 4579999998 9999999999999999998865
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0039 Score=51.93 Aligned_cols=48 Identities=29% Similarity=0.481 Sum_probs=40.1
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
.....+++++++.|| +.|||+|...+|.+.++.+++.. .+.++.+...
T Consensus 26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344445889999999 99999999999999999999976 5777777764
|
|
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=56.83 Aligned_cols=139 Identities=12% Similarity=0.183 Sum_probs=85.1
Q ss_pred CCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hC--CcEEEEEeCCChhhHHH
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KI--NTQVIACSTDSHFSHLA 434 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~--~~~vi~is~d~~~~~~~ 434 (547)
..+|++...+ ++| +.+++.+. +||+.||..+...|-..|....-. ...++|. .. .++++-|+....- .+.
T Consensus 99 lyFP~l~g~t-L~g--~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~-~k~ 172 (252)
T PF05176_consen 99 LYFPNLQGKT-LAG--NKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENW-LKS 172 (252)
T ss_pred CcCCCCcccc-CCC--CCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHH-HHH
Confidence 3689999998 888 47777665 899998888856666555555332 3334443 33 6899999875421 111
Q ss_pred Hh-----hccccCCCCC-CcceeeecCC--ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 435 WC-----NIPRNKGGLG-DMAIPILSDK--SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 435 ~~-----~~~~~~~~~~-~~~fp~l~D~--~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
|+ ...++..... ...|-+..+. ...+-+.+++.... .-.+||||.+|+||+.-.|..++. .++.+.+
T Consensus 173 ~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~----~GYvyLVD~~grIRWagsG~At~~-E~~~L~k 247 (252)
T PF05176_consen 173 WLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSY----VGYVYLVDPNGRIRWAGSGPATPE-ELESLWK 247 (252)
T ss_pred HHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCC----cCeEEEECCCCeEEeCccCCCCHH-HHHHHHH
Confidence 11 1112221111 3334444433 46788889988543 566999999999999997766533 3344444
Q ss_pred HH
Q psy224 507 LV 508 (547)
Q Consensus 507 ~l 508 (547)
.+
T Consensus 248 ~~ 249 (252)
T PF05176_consen 248 CV 249 (252)
T ss_pred HH
Confidence 33
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >KOG4498|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.018 Score=52.01 Aligned_cols=131 Identities=14% Similarity=0.226 Sum_probs=88.3
Q ss_pred cCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCc
Q psy224 370 VNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDM 448 (547)
Q Consensus 370 ~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~ 448 (547)
..| +.+.+.++ +.+..+|.|-+-.-|-.|+.+...|..+.+-+++.|+.+|+|-..+....+.|.++. .+
T Consensus 37 ~rg--~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f 107 (197)
T KOG4498|consen 37 SRG--ESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YF 107 (197)
T ss_pred hcC--ceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Cc
Confidence 456 58999888 667788999989999999999999999988888999999999864444444444432 23
Q ss_pred ceeeecCCChHHHHHhCCc----------------------ccCC----CcceeEEEEEcCCCcEEEEEecCC-CCCCCH
Q psy224 449 AIPILSDKSMSIARSYGVL----------------------NEET----GIPYRGLFIIDDKQNLRQITINDL-PVGRSV 501 (547)
Q Consensus 449 ~fp~l~D~~~~~~~~~~v~----------------------~~~~----g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~ 501 (547)
.=.++.|++..+...++.. ...+ +......+++.+.++|.+.+.... .+..++
T Consensus 108 ~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i 187 (197)
T KOG4498|consen 108 SGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPI 187 (197)
T ss_pred ceeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCH
Confidence 3356666654433333221 1110 122344788888889999996443 234478
Q ss_pred HHHHHHHH
Q psy224 502 DETLRLVQ 509 (547)
Q Consensus 502 ~~il~~l~ 509 (547)
+++++.+.
T Consensus 188 ~~Vl~v~~ 195 (197)
T KOG4498|consen 188 DSVLQVVG 195 (197)
T ss_pred HHHHHHhh
Confidence 88887754
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=47.08 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=32.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChh
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHF 430 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~ 430 (547)
.+|+++|+|+ +.||+.|...-..+ .++.+.+. +++..+-|..+...
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDED 64 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCC
Confidence 5899999999 99999999887665 22333233 46777777665543
|
... |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.045 Score=46.37 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+.+.+||-|+ ++| |.|-. .|...++..+|.+. .+.+.-|.++..... .+.++
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~-----------------------~~~~L 70 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEK-----------------------LNMEL 70 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccch-----------------------hhHHH
Confidence 4578899999 966 66665 48888888888543 244444443321110 24689
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL--RQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v--~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+++|+|..+ .+|+.+++. +|.. ...+.| .+|..+.|++.+++
T Consensus 71 ~~~y~I~~~----gyPTl~lF~-~g~~~~~~~Y~G---~~r~~~~lv~~v~~ 114 (116)
T cd03007 71 GERYKLDKE----SYPVIYLFH-GGDFENPVPYSG---ADVTVDALQRFLKG 114 (116)
T ss_pred HHHhCCCcC----CCCEEEEEe-CCCcCCCccCCC---CcccHHHHHHHHHh
Confidence 999999732 389999995 5531 122211 22678888877654
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >KOG0190|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.012 Score=61.81 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=65.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
...++|-|| |.||.+|....|++.+....+.+.+-.+-..-+|. ..++.++.+
T Consensus 42 ~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDa--------------------------t~~~~~~~~ 94 (493)
T KOG0190|consen 42 HEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA--------------------------TEESDLASK 94 (493)
T ss_pred CceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec--------------------------chhhhhHhh
Confidence 356788899 99999999999999999999986531111111111 134788999
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|++. .+||.-|+ ++|+....+.| .|..+.|+.-|++-.
T Consensus 95 y~v~------gyPTlkiF-rnG~~~~~Y~G----~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 95 YEVR------GYPTLKIF-RNGRSAQDYNG----PREADGIVKWLKKQS 132 (493)
T ss_pred hcCC------CCCeEEEE-ecCCcceeccC----cccHHHHHHHHHhcc
Confidence 9998 58998877 79998555533 346788888877644
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.11 Score=44.23 Aligned_cols=88 Identities=10% Similarity=0.163 Sum_probs=60.0
Q ss_pred CCCeEEEEEEeCC----CCCCcHHHH--HHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 383 KGQYVVLFFYPLD----FTFVCPTEI--IAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 383 ~gk~~ll~f~~~~----~cp~C~~~~--~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.+|.++|+++ .. ||-.|+..+ |++.+..+ .++-+++.+.+.++
T Consensus 16 e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~~e-------------------------- 64 (116)
T cd02991 16 ELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAKPE-------------------------- 64 (116)
T ss_pred hCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCChH--------------------------
Confidence 5799999999 88 677776553 34444443 35555555554432
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEE---cCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFII---DDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~li---d~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
..++++.+++. .+|+..++ +.+.+|+.+..|.. +.++++..|+.+
T Consensus 65 g~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G~~----~~~~ll~~L~~~ 112 (116)
T cd02991 65 GYRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEGLI----QPEDLINRLTFI 112 (116)
T ss_pred HHHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeCCC----CHHHHHHHHHHH
Confidence 25788888887 58999999 66677788887766 466777777654
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >smart00732 YqgFc Likely ribonuclease with RNase H fold | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.028 Score=46.11 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.6
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeeccccc
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESK 34 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~ 34 (547)
.+||||+|+|.+|++++|.+|++ +.....
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~-~~~~~~ 30 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKL-ADPLEV 30 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCE-ecCEEE
Confidence 38999999999999999999997 654443
|
YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions. |
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.087 Score=47.32 Aligned_cols=104 Identities=6% Similarity=-0.044 Sum_probs=47.4
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHH------HHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcce
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEII------AFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI 450 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~------~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~f 450 (547)
+..+.-.+|+++|.++ .+||..|+.... ++.++.++ ++.-|-|..+...++.....
T Consensus 30 ~~~Ak~e~KpIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN~----~FI~VkvDree~Pdid~~y~------------- 91 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIG-YSWCHWCHVMERESFSDPEVAEYLNR----NFIPVKVDREERPDIDKIYM------------- 91 (163)
T ss_dssp HHHHHHHT--EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHHH----H-EEEEEETTT-HHHHHHHH-------------
T ss_pred HHHHHhcCCcEEEEEE-ecCCcchhhhcccCcCCHHHHHHHhC----CEEEEEeccccCccHHHHHH-------------
Confidence 3344446899999999 999999987643 22222222 22222222222222221111
Q ss_pred eeecCCChHHHHH-hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC----CCHHHHHHHHHhhH
Q psy224 451 PILSDKSMSIARS-YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG----RSVDETLRLVQAFQ 512 (547)
Q Consensus 451 p~l~D~~~~~~~~-~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~----~~~~~il~~l~~l~ 512 (547)
...+. .|.- .+|++++++++|+..+...+-.+.. ..+.++|+.+.++-
T Consensus 92 --------~~~~~~~~~g------GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w 144 (163)
T PF03190_consen 92 --------NAVQAMSGSG------GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELW 144 (163)
T ss_dssp --------HHHHHHHS---------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHH
T ss_pred --------HHHHHhcCCC------CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHH
Confidence 11111 1332 4899999999999998874333221 24566666655443
|
; PDB: 3IRA_A. |
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.091 Score=44.84 Aligned_cols=111 Identities=11% Similarity=0.126 Sum_probs=72.0
Q ss_pred eccCCCCCeE-EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 378 KLSQYKGQYV-VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 378 ~l~~~~gk~~-ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.|+++++|-. ||+|-|...-+.-..++..|.+....+.++.+.++.+..+...... .++-...
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~----------------~~~~~~~ 65 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG----------------KPLSPED 65 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc----------------CcCCHHH
Confidence 3667777533 4444444444555667778888777888888988888554432211 0010112
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
...+.+.|++.. ..-+.+||++||.+..++..+. +.+++-+.+.+.+-
T Consensus 66 ~~~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~p~----~~~~lf~~ID~MPm 113 (118)
T PF13778_consen 66 IQALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPEPI----DPEELFDTIDAMPM 113 (118)
T ss_pred HHHHHHHhCCCC-----CceEEEEEeCCCcEEEecCCCC----CHHHHHHHHhCCcc
Confidence 368888898873 2467999999999999984333 57788888776653
|
|
| >COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.061 Score=52.84 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh-hhcCCcEEEeeCCchhhc-HHHHHHHHHHhCCce
Q psy224 288 LFVALCEGIINNIHDIMNRSVL-HRSGINRIIGIGSCLTRN-HILQHYIERIYGLQL 342 (547)
Q Consensus 288 l~ra~~Egia~~~~~~~~~~~l-~~~g~~~I~~~GG~~~k~-~~~~q~~Ad~l~~~v 342 (547)
....+++-.+..+...+++ + ...+..++.+.||. .++ +.|....-..+..+.
T Consensus 224 ~A~~Il~~aa~~i~~~~~~--l~~~~g~~~l~l~GG~-~~~~~~~~~~~~~~l~~~~ 277 (301)
T COG2971 224 VAIRILKEAAAYIATLLEA--LSIFNGSEKLSLLGGL-APSYPYYLSLFRRALLVPP 277 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcccCCceEEEeccc-cccchhhHHHHHHHhcCCc
Confidence 3446777777888888874 5 35567899999995 665 788877776666655
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.07 Score=56.91 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=59.1
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHH-HHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIA-FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~-l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
-++|+++|+|+ |.||-.|+..-+. +++-..+++-.|+..+=...... ...+.++
T Consensus 472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~------------------------~p~~~~l 526 (569)
T COG4232 472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAN------------------------DPAITAL 526 (569)
T ss_pred CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCC------------------------CHHHHHH
Confidence 35579999999 9999999876443 43444444444444443322110 1123677
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.++|++. ..|+.++++++|+-.....+-. +.+..++.+++
T Consensus 527 Lk~~~~~------G~P~~~ff~~~g~e~~~l~gf~----~a~~~~~~l~~ 566 (569)
T COG4232 527 LKRLGVF------GVPTYLFFGPQGSEPEILTGFL----TADAFLEHLER 566 (569)
T ss_pred HHHcCCC------CCCEEEEECCCCCcCcCCccee----cHHHHHHHHHH
Confidence 7889988 5899999999998776632223 34455555543
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.37 Score=36.42 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|+ ++|||+|....+.|.+ .++.+..+..+.
T Consensus 2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 45667 9999999987665543 467776665544
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.37 Score=42.39 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=61.7
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
....+|+.++.|- ...|++|...-..+ .++++.+.. .+.++-+........ .|.. +.. ...-+
T Consensus 38 i~~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv-~f~~---------g~k--ee~~s 103 (182)
T COG2143 38 ISPNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPV-LFKV---------GDK--EEKMS 103 (182)
T ss_pred cCccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcce-Eeec---------Cce--eeeec
Confidence 3446899999999 99999997664433 344544443 355544443221111 1111 111 11113
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
..++++.|++. +.|+.++.|++|+-+...-|..+
T Consensus 104 ~~ELa~kf~vr------stPtfvFfdk~Gk~Il~lPGY~p 137 (182)
T COG2143 104 TEELAQKFAVR------STPTFVFFDKTGKTILELPGYMP 137 (182)
T ss_pred HHHHHHHhccc------cCceEEEEcCCCCEEEecCCCCC
Confidence 57999999998 69999999999999988855564
|
|
| >KOG0191|consensus | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.095 Score=54.69 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=50.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++.+|.|| ++||.+|....|.+.++...++. .+....+|. +..+.+.+
T Consensus 46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~--------------------------~~~~~~~~ 95 (383)
T KOG0191|consen 46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG---KVKIGAVDC--------------------------DEHKDLCE 95 (383)
T ss_pred cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcC---ceEEEEeCc--------------------------hhhHHHHH
Confidence 4578899999 99999999999999999988875 222223332 23467788
Q ss_pred HhCCcccCCCcceeEEEEEcCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDK 484 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~ 484 (547)
.|++. ..|+..++.++
T Consensus 96 ~y~i~------gfPtl~~f~~~ 111 (383)
T KOG0191|consen 96 KYGIQ------GFPTLKVFRPG 111 (383)
T ss_pred hcCCc------cCcEEEEEcCC
Confidence 88888 47888888766
|
|
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.24 Score=48.34 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe-----CCChhh---------HHHHhhccccCCCCCCc
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS-----TDSHFS---------HLAWCNIPRNKGGLGDM 448 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is-----~d~~~~---------~~~~~~~~~~~~~~~~~ 448 (547)
.+|.+|..|. -..||+|+....++..+.+. .++++.-+. .++... ..+..+.+...+...++
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~~---g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVDS---GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhhc---CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 4678888899 99999999999888776543 125554442 222111 11111111111000011
Q ss_pred ceee--------ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 449 AIPI--------LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 449 ~fp~--------l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
.-+. ..+.+.++++.+|+. ..|+.|+.|.+|++...-
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~------GTPaiv~~d~~G~~~~v~ 236 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGAN------ATPAIYYMDKDGTLQQVV 236 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCEEEec
Confidence 1111 112245677788887 589999999999876554
|
|
| >KOG1731|consensus | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.04 Score=58.10 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=63.9
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-C-cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-N-TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~-~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
|.-+|-|| ++||+.|+...|.++++.+.+++- + +.|.+|.+-.. .+..+.+
T Consensus 58 ~~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~--------------------------~N~~lCR 110 (606)
T KOG1731|consen 58 KAKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE--------------------------ENVKLCR 110 (606)
T ss_pred hhHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch--------------------------hhhhhHh
Confidence 45689999 999999999999999999888752 2 56777776432 3578888
Q ss_pred HhCCcccCCCcceeEEEEEcCC------CcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDK------QNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~------G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
.|+|. .+|+...+-++ |.-+. ++.......+.+++.|.+..+.
T Consensus 111 ef~V~------~~Ptlryf~~~~~~~~~G~~~~---~~~~~~ei~~~l~~~la~~~~~ 159 (606)
T KOG1731|consen 111 EFSVS------GYPTLRYFPPDSQNKTDGSDVS---GPVIPSEIRDQLIRTLAEEDAQ 159 (606)
T ss_pred hcCCC------CCceeeecCCccccCcCCCccc---CCcchhhHHHHHHHHHHHHHhh
Confidence 99988 47887777665 33332 2222232345555666665554
|
|
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.084 Score=54.97 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=24.8
Q ss_pred ceEEEEEeCCceeEEEEEec-CCCeeeccccccccc
Q psy224 4 QVVLGIDIGTTSVKVCLIDA-NTREELSSESKDTQA 38 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~~~~~~ 38 (547)
+|-++||||||++.+.++|. +|++ ++..+...+.
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~-l~~~s~~NpQ 35 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEV-LATASFLNPQ 35 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--E-EEEEEEE-GG
T ss_pred CEEEEEEcchhheeeEEEECCCCCE-EEeecccCCC
Confidence 46789999999999999996 6777 8888777754
|
|
| >COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.14 Score=51.91 Aligned_cols=35 Identities=43% Similarity=0.565 Sum_probs=30.9
Q ss_pred CCceEEEEEeCCceeEEEEEecCCCeeecccccccc
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQ 37 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~ 37 (547)
++.+++|||||.|++|++++|.+|++ +...+.+++
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~-l~~~~~~~~ 38 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEI-LLRERIPTP 38 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcE-EEEEEEecC
Confidence 36799999999999999999999998 777777774
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.65 Score=40.26 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=37.2
Q ss_pred cCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 454 SDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 454 ~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|.+.+++.+|||. .+|+.+++ ++|+.+....|..+ -+++.+.|+++-
T Consensus 77 iD~~~~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~~~----k~~l~~~I~~~L 124 (132)
T PRK11509 77 LEQSEAIGDRFGVF------RFPATLVF-TGGNYRGVLNGIHP----WAELINLMRGLV 124 (132)
T ss_pred CCCCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCcCC----HHHHHHHHHHHh
Confidence 35578999999998 58999999 69999999976554 356666666544
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.77 Score=35.64 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=40.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCc
Q psy224 394 LDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473 (547)
Q Consensus 394 ~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~ 473 (547)
+..||.|+.....+++..+++ ++.+-.+.. .| .+++ ..||+.
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~---------------------------~~-~~~~-~~ygv~------ 48 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDI---------------------------ED-FEEI-EKYGVM------ 48 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEET---------------------------TT-HHHH-HHTT-S------
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEc---------------------------cC-HHHH-HHcCCC------
Confidence 777999998787777777665 333311111 01 2344 899998
Q ss_pred ceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 474 PYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 474 ~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
..|+. +| ||++++. |..+ +.+++.++|+
T Consensus 49 ~vPal-vI--ng~~~~~--G~~p---~~~el~~~l~ 76 (76)
T PF13192_consen 49 SVPAL-VI--NGKVVFV--GRVP---SKEELKELLE 76 (76)
T ss_dssp SSSEE-EE--TTEEEEE--SS-----HHHHHHHHHH
T ss_pred CCCEE-EE--CCEEEEE--ecCC---CHHHHHHHhC
Confidence 58988 56 4777643 3333 3456655553
|
... |
| >KOG0912|consensus | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.21 Score=48.70 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=61.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC---CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI---NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~---~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
...+.|+|+ |.||+....-.|.+.+..++|+++ |-.|.+ .+-+|.+..+
T Consensus 13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg---------------------------~VDcd~e~~i 64 (375)
T KOG0912|consen 13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG---------------------------KVDCDKEDDI 64 (375)
T ss_pred ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE---------------------------EcccchhhHH
Confidence 467899999 999999999999999998888743 111111 1224556788
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+.+|.|.+ +||.=|+ ++|.+..+.+.. .|+++.+++-++
T Consensus 65 a~ky~I~K------yPTlKvf-rnG~~~~rEYRg---~RsVeaL~efi~ 103 (375)
T KOG0912|consen 65 ADKYHINK------YPTLKVF-RNGEMMKREYRG---QRSVEALIEFIE 103 (375)
T ss_pred hhhhcccc------Cceeeee-eccchhhhhhcc---chhHHHHHHHHH
Confidence 88999984 8998777 689888755322 234555544444
|
|
| >PRK13311 N-acetyl-D-glucosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.2 Score=49.08 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=37.2
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
++|||||.|++|++++|.+|++ +.+.+.+.+ ..+++++.+.+.+.+...
T Consensus 2 ~lgidiggt~i~~~l~d~~g~i-~~~~~~~~~--------------~~~~~~~~~~i~~~i~~~ 50 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQR-IWHKRVPTP--------------REDYPQLLQILRDLTEEA 50 (256)
T ss_pred EEEEEECCCcEEEEEECCCCCE-EEEEEecCC--------------CcCHHHHHHHHHHHHHHH
Confidence 6999999999999999999998 766654441 235667777777666544
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.29 Score=41.69 Aligned_cols=76 Identities=9% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCCeEEEEEEe------CCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 383 KGQYVVLFFYP------LDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 383 ~gk~~ll~f~~------~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.++++.|+|.- .+|||.|....|.+.+..+.. ..+..+|-+.+.+. ..|.+ +
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~-~~~~~lv~v~VG~r---~~Wkd------------------p 75 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA-PENARLVYVEVGDR---PEWKD------------------P 75 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H---HHHC-------------------T
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC-CCCceEEEEEcCCH---HHhCC------------------C
Confidence 46778888882 259999999999999887773 34778877776543 45543 2
Q ss_pred ChHH--HHHhCCcccCCCcceeEEEEEcCCCc
Q psy224 457 SMSI--ARSYGVLNEETGIPYRGLFIIDDKQN 486 (547)
Q Consensus 457 ~~~~--~~~~~v~~~~~g~~~p~~~lid~~G~ 486 (547)
+... ...+++. .+||.+-++..++
T Consensus 76 ~n~fR~~p~~~l~------~IPTLi~~~~~~r 101 (119)
T PF06110_consen 76 NNPFRTDPDLKLK------GIPTLIRWETGER 101 (119)
T ss_dssp TSHHHH--CC---------SSSEEEECTSS-E
T ss_pred CCCceEcceeeee------ecceEEEECCCCc
Confidence 2222 2247776 5899888876544
|
; PDB: 1V9W_A 1WOU_A. |
| >COG3054 Predicted transcriptional regulator [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.39 Score=41.78 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=76.9
Q ss_pred cCCCCCCeeecc----ccCCc---eeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHH-HHHhhCCcE-EEEEeCC
Q psy224 357 LEKPAPEFEGQA----VVNGQ---FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRA-EEFKKINTQ-VIACSTD 427 (547)
Q Consensus 357 ~g~~~p~~~l~~----~~~G~---~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~-~~~~~~~~~-vi~is~d 427 (547)
++.+.|...+.+ ..+++ .+...-+++.||+.||.-- |--...=....+-+..+. .+|.....+ --.|+.|
T Consensus 25 ~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hi-AGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIiN~D 103 (184)
T COG3054 25 LGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHI-AGRTSAKEKNATLIEAIKSAKFPHDRYQTTTIINTD 103 (184)
T ss_pred cCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhh-hcccchhhhchHHHHHHHhccCChHHceeeEEeccC
Confidence 666677665554 11221 2234445678888887655 322221111122233221 122211122 2223444
Q ss_pred C-hhhHHHHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy224 428 S-HFSHLAWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETL 505 (547)
Q Consensus 428 ~-~~~~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il 505 (547)
+ ..-.-.|.+.-.+.. ++..|+. ++.|..+....+|++.-+ -.+.+++|++|+|.+...|..+.. ++.+++
T Consensus 104 DAi~GtgmFVkssae~~-Kke~pwSq~vlD~~gvak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaLt~a-evQ~Vi 176 (184)
T COG3054 104 DAIPGTGMFVKSSAESN-KKEYPWSQFVLDSNGVAKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGALTQA-EVQQVI 176 (184)
T ss_pred Cccccccceeecchhhc-cccCCceeeEEccchhhhhhhccccc-----cceEEEEcCCCcEEEEecCCccHH-HHHHHH
Confidence 3 222223332211111 1145554 567888855558998742 367899999999999998777654 678888
Q ss_pred HHHHhh
Q psy224 506 RLVQAF 511 (547)
Q Consensus 506 ~~l~~l 511 (547)
..|..+
T Consensus 177 ~ll~~l 182 (184)
T COG3054 177 DLLQKL 182 (184)
T ss_pred HHHHHh
Confidence 877654
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.7 Score=44.53 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=60.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEE--eCC---C--hhh-HHHHhhcc-----ccCCCCCCcc
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIAC--STD---S--HFS-HLAWCNIP-----RNKGGLGDMA 449 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~i--s~d---~--~~~-~~~~~~~~-----~~~~~~~~~~ 449 (547)
.||.+|+.|. -..||+|+...+++.++.+ .+++|..+ ... + ... ..-|+.+- ...+.....+
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 4788899999 9999999999888776643 46766554 221 1 111 11222210 0000111111
Q ss_pred e---eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 450 I---PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 450 f---p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
- ....+.+.++++++|+. ..|+.+ + ++|+++ .|.. +.+++.+.|++.|
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~------gTPtiv-~-~~G~~~---~G~~----~~~~L~~~l~~~~ 231 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQ------GTPAIV-L-SNGTLV---PGYQ----GPKEMKAFLDEHQ 231 (232)
T ss_pred cccccchHHHhHHHHHHcCCc------cccEEE-E-cCCeEe---eCCC----CHHHHHHHHHHcc
Confidence 1 11123357888889988 589877 3 478765 2222 3456666665443
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.28 Score=47.55 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
..++++..++.+.-.+++.+ ++.+++.|+++||+ ++.+.+.+.+.+.++.|+.....+....
T Consensus 171 ~~~~i~~~~~~i~~~i~~~l-----~~~~~~~v~LtGG~-a~ipgl~e~l~~~lg~~v~~~~~P~~~v 232 (239)
T TIGR02529 171 IFPVVKPVYQKMASIVKRHI-----EGQGVKDLYLVGGA-CSFSGFADVFEKQLGLNVIKPQHPLYVT 232 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhCCCCEEEEECch-hcchhHHHHHHHHhCCCcccCCCCCeeh
Confidence 34556666666666666544 35567899999998 9999999999999999998877665543
|
|
| >KOG0190|consensus | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.17 Score=53.46 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~ 417 (547)
.+|-+||-|| |.||++|..-.|.+++|.+.|++.
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 4688999999 999999999999999999999873
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.28 Score=47.80 Aligned_cols=54 Identities=7% Similarity=0.200 Sum_probs=43.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-C-cEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 279 TIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG-I-NRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 279 ~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~-~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
.... .+++++.++..+++-.+...++ ..+ . ++|+++||. ++|+.+.+.+.+.++
T Consensus 181 ~~G~-~~edI~aGl~~sia~r~~~~~~-----~~~~~~~~v~~~GGv-a~n~~~~~~le~~l~ 236 (262)
T TIGR02261 181 SRGI-SAPNILKGIHESMADRLAKLLK-----SLGALDGTVLCTGGL-ALDAGLLEALKDAIQ 236 (262)
T ss_pred HCCC-CHHHHHHHHHHHHHHHHHHHHh-----ccCCCCCcEEEECcc-cccHHHHHHHHHHhc
Confidence 4444 8999999999999987755444 333 3 469999995 999999999999884
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.37 Score=37.06 Aligned_cols=22 Identities=5% Similarity=0.138 Sum_probs=17.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
|..|| ++|||+|....+.|.++
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHHc
Confidence 56788 99999999987766543
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.45 Score=46.97 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
...++++..++-+.-.+++.++ +..++.|+++||+ ++.+.+.+++.+.++.|+.....++...
T Consensus 197 ~~~~ii~~~~~~i~~~i~~~l~-----~~~~~~IvLtGG~-s~lpgl~e~l~~~lg~~v~~~~~P~~~~ 259 (267)
T PRK15080 197 EIFPVVKPVVEKMASIVARHIE-----GQDVEDIYLVGGT-CCLPGFEEVFEKQTGLPVHKPQHPLFVT 259 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cCCCCEEEEECCc-ccchhHHHHHHHHhCCCcccCCCchHHH
Confidence 3456777777777777666554 3457899999998 9999999999999999999887776544
|
|
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.23 Score=52.35 Aligned_cols=31 Identities=39% Similarity=0.526 Sum_probs=25.1
Q ss_pred EEEEEeCCceeEEEEEe---cCCCeeecccccccc
Q psy224 6 VLGIDIGTTSVKVCLID---ANTREELSSESKDTQ 37 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d---~~g~~~l~~~~~~~~ 37 (547)
+|.+|||+|.+|+.+|| .+.++ ++..+.++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~-ig~a~apTT 35 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRL-IGQAEAPTT 35 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEE-EEEEeCCCC
Confidence 68899999999999999 34454 888877763
|
|
| >PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.87 Score=46.80 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCC-ceEEe
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGL-QLIVE 345 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~-~v~~~ 345 (547)
+++|+++-+.|-+|.++.+.++. +... +.+|+++||| ++|+.+++.+...+.. +|...
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~--~~~~-~~~v~v~GGG-a~N~~L~~~L~~~l~~~~v~~~ 316 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRR--FPPQ-PDEVYVCGGG-ARNPFLMERLQERLPGIPVKTT 316 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH--H-TT--EEEEEESGG-GG-HHHHHHHHHH-TTCEEEEG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh--cCCC-CceEEEECCC-cCCHHHHHHHHhhCCCCEEecH
Confidence 58999999999999999888773 3222 6899999999 9999999999998865 66553
|
It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B. |
| >PRK09698 D-allose kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.61 Score=46.83 Aligned_cols=33 Identities=48% Similarity=0.801 Sum_probs=28.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
..+++|||+|.|++|++++|.+|++ +.+...++
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~i-~~~~~~~~ 35 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGEI-LHCEKKRT 35 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCCE-EEEEEeCC
Confidence 3689999999999999999999998 77666555
|
|
| >PRK13310 N-acetyl-D-glucosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.58 Score=47.05 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=37.2
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
++|||+|.|++|++++|.+|++ +.+.+.+.+ ..+++++.+.+...+...
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i-~~~~~~~~~--------------~~~~~~~~~~i~~~i~~~ 50 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLEL-QWEERVPTP--------------RDSYDAFLDAVCELVAEA 50 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcE-EEEEEecCC--------------CcCHHHHHHHHHHHHHHH
Confidence 6999999999999999999998 766554431 234677888777776644
|
|
| >PRK09557 fructokinase; Reviewed | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.62 Score=46.81 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=35.6
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
+||||+|.|++|++++|.+|++ +.+.+.+++ ..+++++.+.+...+..
T Consensus 2 ~lgidig~t~~~~~l~d~~g~i-~~~~~~~~~--------------~~~~~~~~~~i~~~i~~ 49 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGEE-LFRKRLPTP--------------RDDYQQTIEAIATLVDM 49 (301)
T ss_pred EEEEEECCCcEEEEEECCCCCE-EEEEEecCC--------------CCCHHHHHHHHHHHHHH
Confidence 7999999999999999999998 766554431 13556677766665543
|
|
| >PRK00292 glk glucokinase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.31 Score=49.36 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=24.4
Q ss_pred CceEEEEEeCCceeEEEEEec-CCCeeecccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDA-NTREELSSESKD 35 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~~~ 35 (547)
|+++||||||.|++|++++|. .+.+ +...+.+
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~~~~~-~~~~~~~ 33 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWANGEI-EQIKTYA 33 (316)
T ss_pred CceEEEEEcCccceEEEEEecCCCce-eeeEEEe
Confidence 457999999999999999995 4544 5554443
|
|
| >COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.68 E-value=3.1 Score=41.87 Aligned_cols=53 Identities=15% Similarity=0.319 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY 338 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l 338 (547)
+++++.++..|.+.-.+.+..++ .++..+.++++++||. +.|+.+++++....
T Consensus 233 d~~dia~sfQ~av~~~L~~kt~r-Al~~~~~~~lvi~GGV-aaN~~LR~~l~~~~ 285 (342)
T COG0533 233 DKEDIAASFQEAVFDMLVEKTER-ALKHTGKKELVIAGGV-AANSRLREMLEEMC 285 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCEEEEeccH-HHhHHHHHHHHHHH
Confidence 46679999999998888888877 6888899999999996 99999999988866
|
|
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.8 Score=35.88 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=50.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
..++++|+=. .+.||.....+.++.+.++...+. +.++.+-+-..+. -...++.
T Consensus 18 ~~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~------------------------vSn~IAe 71 (105)
T PF11009_consen 18 KEKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRP------------------------VSNAIAE 71 (105)
T ss_dssp --SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHH------------------------HHHHHHH
T ss_pred ccCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCch------------------------hHHHHHH
Confidence 3577777666 999999999999999888877653 6666664422111 1368999
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
.|||..+ -|..+|| ++|++++...
T Consensus 72 ~~~V~He-----SPQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 72 DFGVKHE-----SPQVILI-KNGKVVWHAS 95 (105)
T ss_dssp HHT---------SSEEEEE-ETTEEEEEEE
T ss_pred HhCCCcC-----CCcEEEE-ECCEEEEECc
Confidence 9999974 5999999 5999998874
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.7 Score=45.59 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=39.2
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
.++++||||||+++|+++.+.+++. +.....+-.. -..|. -.|.+...+.++.++..
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~~-~~~~~~~~~~-------vr~G~-i~di~~a~~~i~~~~~~ 79 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQP-VAGALEWADV-------VRDGI-VVDFIGAVTIVRRLKAT 79 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCCE-EEEEeccccc-------cCCCE-EeeHHHHHHHHHHHHHH
Confidence 4689999999999999999877765 5544433311 13344 67777777777776653
|
|
| >PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.95 Score=46.48 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEE
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
+++++++-+.|-.|.++.+.+.. +. ...++|+++||| ++|+.+++.+...+..+|..
T Consensus 260 s~~D~~aTlt~~TA~sI~~~~~~--~~-~~~~~vlv~GGG-a~N~~Lm~~L~~~l~~~v~~ 316 (365)
T PRK09585 260 SPEDVQATLTELTAASIARAVRR--LP-PGPDELLVCGGG-ARNPTLMERLAALLPTEVAT 316 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh--cc-CCCCEEEEECCC-cchHHHHHHHHHhcCCcccC
Confidence 78999999999999999888863 32 224689999999 99999999999988644444
|
|
| >PRK12408 glucokinase; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.29 Score=50.05 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.3
Q ss_pred CceEEEEEeCCceeEEEEEecCCC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
+.++|++|||+|++|.+++|.+|+
T Consensus 15 ~~~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 15 PESFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred cccEEEEEcChhhhheeEEeccCC
Confidence 345899999999999999998886
|
|
| >PRK13318 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.87 Score=44.66 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh-cC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR-SG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g-~~~I~~~GG~ 323 (547)
|...+...++.|++..+...++. +++ .+ .-+|+++||.
T Consensus 185 T~~ai~~G~~~~~~~~i~~~~~~--~~~~~~~~~~vi~TGG~ 224 (258)
T PRK13318 185 TVEAMQSGIYYGYVGLVEGIVKR--IKEELGKDPKVIATGGL 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCCCEEEEECCc
Confidence 78888889999998888888874 433 44 3479999996
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.38 Score=47.51 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=22.9
Q ss_pred EEEEeCCceeEEEEEecCCCeeecccc
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSSES 33 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~~~ 33 (547)
||||.|+|++|++|+|.+|++ +.+..
T Consensus 1 lGIDgGgTkt~~vl~d~~g~i-l~~~~ 26 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNI-LGRGK 26 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEE-EEEEE
T ss_pred CEEeeChheeeeEEEeCCCCE-EEEEE
Confidence 799999999999999999997 65553
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames [] | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.83 Score=41.82 Aligned_cols=49 Identities=37% Similarity=0.529 Sum_probs=38.6
Q ss_pred EEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCch
Q psy224 8 GIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKD 72 (547)
Q Consensus 8 gIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r 72 (547)
|||+|+++++++++|.+|++ +.+.+.+++ .+++++.+.+.+.+..+..+
T Consensus 1 gidig~~~i~~~l~d~~g~i-i~~~~~~~~---------------~~~~~~~~~l~~~i~~~~~~ 49 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEI-IYSESIPTP---------------TSPEELLDALAELIERLLAD 49 (179)
T ss_dssp EEEEESSEEEEEEEETTSCE-EEEEEEEHH---------------SSHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCEEEEEEECCCCCE-EEEEEEECC---------------CCHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999998 777766651 66777777777776655444
|
This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A .... |
| >PRK13321 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=88.44 E-value=1 Score=44.14 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~ 323 (547)
|...+-..++.+++..+...++. .-++.+ .-.|+++||.
T Consensus 185 T~~ai~~G~~~~~~~~i~~~i~~-~~~~~~~~~~vi~TGG~ 224 (256)
T PRK13321 185 TVSSIQSGLYYGYAGLVEGIVAR-IKAELGGPPRVIATGGF 224 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCc
Confidence 78888889999999999888884 233355 3479999996
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.5 Score=37.05 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=25.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
|+.|+ ++|||+|....+.|.++. +. ..+.++-|+.+
T Consensus 1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL 36 (84)
T ss_pred CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence 46677 999999999998888765 21 12556555544
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >KOG0191|consensus | Back alignment and domain information |
|---|
Probab=87.77 E-value=1.7 Score=45.34 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
....++.|| +.||++|...+|.+.++...++. .++.+..+..+. ...+.+
T Consensus 162 ~~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~----------------------------~~~~~~ 212 (383)
T KOG0191|consen 162 DADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV----------------------------HKSLAS 212 (383)
T ss_pred CcceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccch----------------------------HHHHhh
Confidence 345678888 99999999999999999998874 556666665541 234556
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+++. .+|+..++-++.. ........|+.+.+.+-++...
T Consensus 213 ~~~v~------~~Pt~~~f~~~~~----~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 213 RLEVR------GYPTLKLFPPGEE----DIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred hhccc------CCceEEEecCCCc----ccccccccccHHHHHHHHHhhc
Confidence 66666 3677777755544 1112334556677766665444
|
|
| >PRK05082 N-acetylmannosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.3 Score=44.20 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=37.1
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+||||+|.++++++++|.+|++ +.+.+.+++ ...+++.+.+.+.+.+..+
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i-~~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~ 52 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQI-RQRRQIPTP-------------ASQTPEALRQALSALVSPL 52 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcE-EEEEEecCC-------------CCCCHHHHHHHHHHHHHHh
Confidence 7999999999999999999998 766655542 1234666777776666543
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=87.44 E-value=1.6 Score=44.63 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh-c---CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR-S---GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA 349 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~-~---g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~ 349 (547)
...+.++..++.++-++++.++- +.. . .+++|+++||| ++.+.+.+.+++.++.|+.+...-.
T Consensus 243 ~~~~~l~~~~~~l~~EI~rsl~~--y~~~~~~~~i~~I~L~Ggg-a~l~gL~~~l~~~l~~~v~~~~p~~ 309 (340)
T PF11104_consen 243 YDQDALRPFLEELAREIRRSLDF--YQSQSGGESIERIYLSGGG-ARLPGLAEYLSEELGIPVEVINPFK 309 (340)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH--HHHH------SEEEEESGG-GGSTTHHHHHHHHHTSEEEE--GGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCCCCEEEEECCc-cchhhHHHHHHHHHCCceEEcChHH
Confidence 45678889999999999999883 333 2 28999999999 9999999999999999999876433
|
|
| >PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P) | Back alignment and domain information |
|---|
Probab=86.40 E-value=0.84 Score=43.06 Aligned_cols=57 Identities=18% Similarity=0.398 Sum_probs=36.3
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.||+||+|+|+.|++++...|+..+...+..|.+ | ........+++++-|..+|..+
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p------~~~~~~~~~~lFd~ia~~i~~f 120 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI--P------EELMNGSGEELFDFIADCIAEF 120 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----------HHHHTSBHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCceeeeccccC--C------hHHhcCCcccHHHHHHHHHHHH
Confidence 6899999999999999998766313333333432 1 1122344577888777776554
|
The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A .... |
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=86.17 E-value=1.5 Score=40.69 Aligned_cols=60 Identities=10% Similarity=0.219 Sum_probs=39.9
Q ss_pred EEEEEeCCceeEEEEEec--CCCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCchh
Q psy224 6 VLGIDIGTTSVKVCLIDA--NTRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKDH 73 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~--~g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r~ 73 (547)
++||||||+++|+++... +|+. +++....+.. .-....-.|++..-+++++++.......
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~--------gi~~G~I~d~~~~~~~I~~ai~~ae~~~ 63 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSR--------GIRKGVIVDIEAAARAIREAVEEAERMA 63 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--------CccCcEEECHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999974 3443 2444433221 0112346789999999999988774443
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=86.09 E-value=2 Score=32.25 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
++.|. .+|||.|......|.+ .++.+..+..+.
T Consensus 2 v~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 45566 9999999986554443 356665555544
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.41 E-value=2.7 Score=42.54 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
++.++..+.+.|-.+-.+-..+. ..+...++++++||| .+|+++|+.+|..+.
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~---~~~~~p~~l~vcGGG-~~N~llm~rLa~l~~ 315 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVA---TLQGDPRRLVVCGGG-RRNPLLMARLAALLE 315 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh---hccCCCceeEeecCC-ccCHHHHHHHHHhcC
Confidence 47899999999988877766554 223347899999999 999999999999995
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.37 E-value=2.8 Score=41.78 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcC---CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSG---INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g---~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
..+.++-+++.+.-++++.++- .+...+ ++.|+++||| ++-..+-+.+.+.++.|+.+..--+.|+.
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqf-y~~~s~~~~id~i~LaGgg-A~l~gL~~~i~qrl~~~t~vanPf~~~~~ 326 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQF-YLSQSEMVDIDQILLAGGG-ASLEGLAAAIQQRLSIPTEVANPFAYMAL 326 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHhccccceeeEEEEecCC-cchhhHHHHHHHHhCCCeEeeCHHHHHhh
Confidence 4578899999999999998873 233333 7899999999 99999999999999999998776666653
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=85.30 E-value=2.8 Score=39.12 Aligned_cols=26 Identities=19% Similarity=0.117 Sum_probs=23.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSD 409 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~ 409 (547)
.+++.|+.|. -..||+|....+.+.+
T Consensus 76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 4788899999 9999999999998876
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.07 E-value=1 Score=43.74 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=27.6
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccc
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSES 33 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~ 33 (547)
|+.++++.||=||||.|+-|++.+|.+ +.+.+
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~-l~~r~ 33 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAV-LAERR 33 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcce-eeeec
Confidence 566889999999999999999999988 65443
|
|
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=84.83 E-value=1.2 Score=39.13 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEE
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIAC 424 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~i 424 (547)
.++++|+.|+ -.+||+|....+.+.++..++.+ ++++..
T Consensus 4 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVFK 42 (154)
T ss_pred CCCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence 3678889999 99999999999999998877653 444443
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.71 E-value=2.9 Score=42.58 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEec
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQ 346 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~ 346 (547)
+.++.+++.|.++-.+.+.++. .+++.++++|+++||. +.|+.+++.+.+.. +..+..++
T Consensus 236 ~~diaasfq~~v~~~L~~k~~~-a~~~~~~~~lvv~GGV-AaN~~LR~~l~~~~~~~~~~~~~p~ 298 (345)
T PTZ00340 236 TDDLCFSLQETIFAMLVEVTER-AMSHCGSNEVLIVGGV-GCNLRLQEMMQQMAKERGGKLFAMD 298 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEcCCH-HHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 5689999999999888887776 5776778999999996 99999999998876 56666543
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=84.70 E-value=6.1 Score=43.46 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++..|-.|. +.+||+|+.....++++..+.. ++..-.|.. ...+++++.
T Consensus 476 ~~~~i~v~~-~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~----------------------------~~~~~~~~~ 524 (555)
T TIGR03143 476 KPVNIKIGV-SLSCTLCPDVVLAAQRIASLNP--NVEAEMIDV----------------------------SHFPDLKDE 524 (555)
T ss_pred CCeEEEEEE-CCCCCCcHHHHHHHHHHHHhCC--CceEEEEEC----------------------------cccHHHHHh
Confidence 344455566 9999999987777777765532 222222211 112678889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
|++. +.|+++| ||++.+. |.. ..+++++.|
T Consensus 525 ~~v~------~vP~~~i---~~~~~~~--G~~----~~~~~~~~~ 554 (555)
T TIGR03143 525 YGIM------SVPAIVV---DDQQVYF--GKK----TIEEMLELI 554 (555)
T ss_pred CCce------ecCEEEE---CCEEEEe--eCC----CHHHHHHhh
Confidence 9998 5898774 4555533 333 467777765
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family | Back alignment and domain information |
|---|
Probab=84.39 E-value=2 Score=39.37 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=25.3
Q ss_pred EEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
||||+|+|.+-++++|.++++ ++..+.++
T Consensus 2 igIDvGGT~TD~v~~d~~~~~-~~~~K~~T 30 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGV-VATAKVPT 30 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCE-EEEEEeCC
Confidence 799999999999999999666 77777666
|
|
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=84.11 E-value=2.1 Score=33.92 Aligned_cols=38 Identities=13% Similarity=-0.056 Sum_probs=29.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|. .+|||.|......|+++..++ .++.+.-+..+.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 56677 999999999999999988765 366666665553
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=83.90 E-value=2.8 Score=40.92 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.7
Q ss_pred eEEEEEeCCceeEEEEEecCCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
+++|||+|+|++|++|+|.+++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~ 23 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGD 23 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCC
Confidence 6899999999999999997654
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family | Back alignment and domain information |
|---|
Probab=83.17 E-value=3.8 Score=41.28 Aligned_cols=53 Identities=15% Similarity=0.314 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY 338 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l 338 (547)
++.++.+++.+.++-.+-+..+. .+++.++++|+++||. +.|+.+++.+.+.+
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~-~~~~~g~~~vvlsGGV-a~N~~L~~~l~~~~ 282 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKR-ALKDTGPKELVLVGGV-SANKRLREMLETLC 282 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEECCH-HHHHHHHHHHHHHH
Confidence 47889999999998888887775 4556789999999996 99999999988877
|
This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. |
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=82.95 E-value=3.6 Score=41.81 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
++.++.+++.+.++-.+-..... ..++.++++|+++||. +.|..+++.+.+.+ +..+.+++.
T Consensus 213 ~~~diAa~fq~~l~~~l~~~~~~-~~~~~g~~~vvlsGGV-a~N~~L~~~l~~~~~~~g~~v~~~~~ 277 (323)
T PRK14878 213 RLEDVCYSLRETAFAMLVEVTER-ALAHTGKKEVLLVGGV-AANRRLREKLEIMAEDRGAKFYVVPP 277 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEeccH-HHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 56899999999988888887775 3455778999999996 99999999999877 666766553
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=82.83 E-value=4.7 Score=45.27 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecc
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQD 347 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~ 347 (547)
-+++...+++.+.-.+++.++...+....+..|+++||+ +|.|.+.+++.+.++.++.....
T Consensus 300 FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGs-sRiP~V~~~l~~~fg~~~~~~~n 361 (668)
T PRK13410 300 FESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGS-TRMPMVQQLVRTLIPREPNQNVN 361 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCc-cccHHHHHHHHHHcCCCcccCCC
Confidence 345555666655555555443100111126799999998 99999999999999987655433
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.53 E-value=1.8 Score=39.93 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 289 FVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
++-++|-+|-..+.+++ ..+++.++++||. +.-+.+..++...|+.+|..+..+-.|.
T Consensus 207 v~PV~eKMAeIv~~hie-----~~~i~dl~lvGGa-c~~~g~e~~Fe~~l~l~v~~P~~p~y~T 264 (277)
T COG4820 207 VKPVYEKMAEIVARHIE-----GQGITDLWLVGGA-CMQPGVEELFEKQLALQVHLPQHPLYMT 264 (277)
T ss_pred hhHHHHHHHHHHHHHhc-----cCCCcceEEeccc-ccCccHHHHHHHHhccccccCCCcceec
Confidence 45688888877777665 6678999999997 9999999999999999999988877654
|
|
| >PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=81.31 E-value=0.99 Score=50.50 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=25.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
.+||||||+|++|.+++|.+|++ +...+.++
T Consensus 19 ~~L~iDIGGT~ir~al~~~~g~i-~~~~~~~t 49 (638)
T PRK14101 19 PRLLADVGGTNARFALETGPGEI-TQIRVYPG 49 (638)
T ss_pred CEEEEEcCchhheeeeecCCCcc-cceeEEec
Confidence 37999999999999999999987 66554443
|
|
| >TIGR03723 bact_gcp putative glycoprotease GCP | Back alignment and domain information |
|---|
Probab=81.21 E-value=3.7 Score=41.49 Aligned_cols=62 Identities=15% Similarity=0.365 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
++.++.+++.+.++-.+.+.++. .+++.++++|+++||. +.|..+++.+.+.+ +..+.+.+.
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~-~~~~~~~~~v~lsGGV-a~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKR-ALKKTGLKTLVVAGGV-AANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEeccH-HHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 47799999999999988888875 4556788999999996 99999999999887 666665443
|
This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=81.08 E-value=2.2 Score=41.36 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=34.6
Q ss_pred EEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 8 GIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 8 gIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
||||||+++|+++.+.+++. ++....+-.. -.+..-.|.+.....++..+.
T Consensus 1 g~dig~~~ik~v~~~~~~~~-~~~~~~~~~~--------~~~g~I~d~~~~~~~l~~l~~ 51 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQP-VAGVMQFADV--------VRDGIVVDFLGAVEIVRRLKD 51 (239)
T ss_pred CCCcccceEEEEEEecCCCE-EEEEeccccc--------ccCCeEEEhHHHHHHHHHHHH
Confidence 79999999999999988765 5555444321 223456777777666665553
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=80.59 E-value=4.2 Score=41.27 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=30.9
Q ss_pred cEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 315 NRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 315 ~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+-|+++||| |+-+.+.+.+++.++.||.+.+.+....
T Consensus 275 ~GI~LtGGg-a~l~Gl~~~i~~~~~~pV~va~~P~~~v 311 (326)
T PF06723_consen 275 NGIVLTGGG-ALLRGLDEYISEETGVPVRVADDPLTAV 311 (326)
T ss_dssp H-EEEESGG-GGSBTHHHHHHHHHSS-EEE-SSTTTHH
T ss_pred CCEEEEChh-hhhccHHHHHHHHHCCCEEEcCCHHHHH
Confidence 469999998 9999999999999999999999887543
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=80.40 E-value=3 Score=42.11 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=23.9
Q ss_pred EEEEeCCceeEEEEEecCCCeeecccccc
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSSESKD 35 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~~~~~ 35 (547)
||||+|.|++|++++|.+|++ +.+...+
T Consensus 1 lgidig~t~~~~~l~d~~g~i-~~~~~~~ 28 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNI-LSKWKVP 28 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCE-EEEEEeC
Confidence 689999999999999999998 7655443
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products | Back alignment and domain information |
|---|
Probab=80.40 E-value=11 Score=34.38 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=62.8
Q ss_pred hhhhhccCCCCCCeeeccccCCceeeEeccCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHH-------HHhhC---
Q psy224 351 RDASYALEKPAPEFEGQAVVNGQFKNIKLSQY---KGQYVVLFFYPLDFTFVCPTEIIAFSDRAE-------EFKKI--- 417 (547)
Q Consensus 351 ~~a~~~~g~~~p~~~l~~~~~G~~~~~~l~~~---~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~-------~~~~~--- 417 (547)
.+....+|..+|+..+....+| +++.+.+. -|++.|+.|-...-.+.+...+..+.+..+ .|..+
T Consensus 26 ~a~~l~~G~Rlp~~~v~r~aD~--~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~ 103 (169)
T PF07976_consen 26 LAGGLRPGRRLPSAKVVRHADG--NPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRD 103 (169)
T ss_dssp GBTTS-TTCB----EEEETTTT--EEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-
T ss_pred cccCcCCccccCCceEEEEcCC--CChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCC
Confidence 3334459999999999887888 69999764 589999999865556655545555555442 44332
Q ss_pred ---CcEEEEEeCCCh--hhHHHHhhccccCCCCCCcc-eeeecCC------ChHHHHHhCCcc
Q psy224 418 ---NTQVIACSTDSH--FSHLAWCNIPRNKGGLGDMA-IPILSDK------SMSIARSYGVLN 468 (547)
Q Consensus 418 ---~~~vi~is~d~~--~~~~~~~~~~~~~~~~~~~~-fp~l~D~------~~~~~~~~~v~~ 468 (547)
-++++.|...+. .++..+.+-++.+-.+.++. +.++.|. .+.+.+.|||..
T Consensus 104 ~~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 104 PDSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp TTSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred CCCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCc
Confidence 288888887643 23334443333222222333 3455553 378888888753
|
The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 547 | ||||
| 1qq2_A | 199 | Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi | 5e-77 | ||
| 2rii_A | 199 | Crystal Structure Of Human Peroxiredoxin I In Compl | 1e-76 | ||
| 3tkp_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 2e-76 | ||
| 3tjf_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C51a Mu | 2e-76 | ||
| 3tjb_A | 254 | Crystal Structure Of Wild-Type Human Peroxiredoxin | 2e-76 | ||
| 3tkr_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 3e-76 | ||
| 3qpm_A | 240 | Crystal Structure Of Peroxiredoxin Prx4 From Pseudo | 5e-76 | ||
| 2pn8_A | 211 | Crystal Structure Of Human Peroxiredoxin 4 (Thiored | 1e-75 | ||
| 3tjk_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C245a M | 2e-75 | ||
| 3tks_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 2e-75 | ||
| 2z9s_A | 199 | Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI | 3e-75 | ||
| 3tjj_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C245a M | 2e-74 | ||
| 1uul_A | 202 | Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr | 3e-74 | ||
| 3hy2_A | 206 | Crystal Structure Of Sulfiredoxin In Complex With P | 1e-73 | ||
| 1qmv_A | 197 | Thioredoxin Peroxidase B From Red Blood Cells Lengt | 8e-73 | ||
| 1zye_A | 220 | Crystal Strucutre Analysis Of Bovine Mitochondrial | 2e-69 | ||
| 3zvj_A | 219 | Crystal Structure Of High Molecular Weight (Hmw) Fo | 2e-68 | ||
| 3ztl_A | 222 | Crystal Structure Of Decameric Form Of Peroxiredoxi | 2e-68 | ||
| 3zvj_D | 219 | Crystal Structure Of High Molecular Weight (Hmw) Fo | 3e-68 | ||
| 3tue_A | 219 | The Structure Of Tryparedoxin Peroxidase I From Lei | 1e-67 | ||
| 1e2y_A | 188 | Tryparedoxin Peroxidase From Crithidia Fasciculata | 2e-64 | ||
| 3sbc_A | 216 | Crystal Structure Of Saccharomyces Cerevisiae Tsa1c | 1e-58 | ||
| 1zof_A | 198 | Crystal Structure Of Alkyl Hydroperoxide-Reductase | 2e-45 | ||
| 2h01_A | 192 | Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I | 8e-43 | ||
| 2h66_A | 213 | The Crystal Structure Of Plasmodium Vivax 2-Cys Per | 1e-40 | ||
| 2c0d_A | 221 | Structure Of The Mitochondrial 2-Cys Peroxiredoxin | 5e-39 | ||
| 1we0_A | 187 | Crystal Structure Of Peroxiredoxin (Ahpc) From Amph | 1e-30 | ||
| 1yep_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 2e-30 | ||
| 1yex_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 3e-30 | ||
| 1yf1_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 6e-30 | ||
| 1yf0_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 8e-30 | ||
| 1n8j_A | 186 | Crystal Structure Of Ahpc With Active Site Cysteine | 3e-29 | ||
| 3emp_A | 186 | Crystal Structure Of The S-Acetanilide Modified For | 3e-29 | ||
| 2bmx_A | 195 | Mycobacterium Tuberculosis Ahpc Length = 195 | 6e-25 | ||
| 3a2v_A | 249 | Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp | 2e-21 | ||
| 2e2g_A | 250 | Crystal Structure Of Archaeal Peroxiredoxin, Thiore | 2e-21 | ||
| 3a5w_A | 249 | Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 | 2e-21 | ||
| 1x0r_A | 249 | Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len | 1e-20 | ||
| 2e2m_A | 250 | Crystal Structure Of Archaeal Peroxiredoxin, Thiore | 3e-20 | ||
| 3a2w_A | 249 | Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero | 3e-20 | ||
| 2zct_A | 249 | Oxidation Of Archaeal Peroxiredoxin Involves A Hype | 3e-20 | ||
| 2cv4_A | 250 | Crystal Structure Of An Archaeal Peroxiredoxin From | 2e-19 | ||
| 1xcc_A | 220 | 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2 | 6e-17 | ||
| 2v2g_A | 233 | Crystal Structure Of The C45s Mutant Of The Peroxir | 1e-16 | ||
| 3tb2_A | 220 | 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2 | 1e-15 | ||
| 1prx_A | 224 | Horf6 A Novel Human Peroxidase Enzyme Length = 224 | 1e-15 | ||
| 2ywn_A | 157 | Crystal Structure Of Peroxiredoxin-Like Protein Fro | 1e-13 | ||
| 3hjp_A | 164 | The Crystal Structure Of Bcp4 From Sulfolobus Solfa | 2e-09 | ||
| 1xxu_A | 153 | Crystal Structure Of Ahpe From Mycrobacterium Tuber | 2e-09 | ||
| 3gkk_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 1e-08 | ||
| 1xvw_A | 160 | Crystal Structure Of Ahpe From Mycobacterium Tuberc | 6e-08 | ||
| 2cx3_A | 164 | Crystal Structure Of A Bacterioferritin Comigratory | 7e-08 | ||
| 4gqc_A | 164 | Crystal Structure Of Aeropyrum Pernix Peroxiredoxin | 9e-08 | ||
| 3gkn_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 2e-07 | ||
| 3ixr_A | 179 | Crystal Structure Of Xylella Fastidiosa Prxq C47s M | 3e-07 | ||
| 3gkm_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 9e-07 | ||
| 3drn_A | 161 | The Crystal Structure Of Bcp1 From Sulfolobus Sulfa | 2e-06 | ||
| 2jsy_A | 167 | Solution Structure Of Tpx In The Oxidized State Len | 7e-05 | ||
| 3p7x_A | 166 | Crystal Structure Of An Atypical Two-Cysteine Perox | 1e-04 |
| >pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199 | Back alignment and structure |
|
| >pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199 | Back alignment and structure |
|
| >pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246 | Back alignment and structure |
|
| >pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254 | Back alignment and structure |
|
| >pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254 | Back alignment and structure |
|
| >pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246 | Back alignment and structure |
|
| >pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240 | Back alignment and structure |
|
| >pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211 | Back alignment and structure |
|
| >pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254 | Back alignment and structure |
|
| >pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246 | Back alignment and structure |
|
| >pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199 | Back alignment and structure |
|
| >pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254 | Back alignment and structure |
|
| >pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202 | Back alignment and structure |
|
| >pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206 | Back alignment and structure |
|
| >pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197 | Back alignment and structure |
|
| >pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220 | Back alignment and structure |
|
| >pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219 | Back alignment and structure |
|
| >pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222 | Back alignment and structure |
|
| >pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219 | Back alignment and structure |
|
| >pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219 | Back alignment and structure |
|
| >pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188 | Back alignment and structure |
|
| >pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216 | Back alignment and structure |
|
| >pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198 | Back alignment and structure |
|
| >pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192 | Back alignment and structure |
|
| >pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin Length = 213 | Back alignment and structure |
|
| >pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221 | Back alignment and structure |
|
| >pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187 | Back alignment and structure |
|
| >pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186 | Back alignment and structure |
|
| >pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186 | Back alignment and structure |
|
| >pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195 | Back alignment and structure |
|
| >pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249 | Back alignment and structure |
|
| >pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250 | Back alignment and structure |
|
| >pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249 | Back alignment and structure |
|
| >pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249 | Back alignment and structure |
|
| >pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250 | Back alignment and structure |
|
| >pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249 | Back alignment and structure |
|
| >pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249 | Back alignment and structure |
|
| >pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250 | Back alignment and structure |
|
| >pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220 | Back alignment and structure |
|
| >pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233 | Back alignment and structure |
|
| >pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220 | Back alignment and structure |
|
| >pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224 | Back alignment and structure |
|
| >pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From Sulfolobus Tokodaii Length = 157 | Back alignment and structure |
|
| >pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus Length = 164 | Back alignment and structure |
|
| >pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 153 | Back alignment and structure |
|
| >pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163 | Back alignment and structure |
|
| >pdb|1XVW|A Chain A, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 160 | Back alignment and structure |
|
| >pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory Protein Peroxiredoxin From The Aeropyrum Pernix K1 (Form-1 Crystal) Length = 164 | Back alignment and structure |
|
| >pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q Enzyme In Fully- Folded And Locally-unfolded Conformations Length = 164 | Back alignment and structure |
|
| >pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped Intermediate/ligand Complex Structures Length = 163 | Back alignment and structure |
|
| >pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant Length = 179 | Back alignment and structure |
|
| >pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163 | Back alignment and structure |
|
| >pdb|3DRN|A Chain A, The Crystal Structure Of Bcp1 From Sulfolobus Sulfataricus Length = 161 | Back alignment and structure |
|
| >pdb|2JSY|A Chain A, Solution Structure Of Tpx In The Oxidized State Length = 167 | Back alignment and structure |
|
| >pdb|3P7X|A Chain A, Crystal Structure Of An Atypical Two-Cysteine Peroxiredoxin (Saouhsc_01822) From Staphylococcus Aureus Nctc8325 Length = 166 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 386 bits (994), Expect = e-134
Identities = 125/189 (66%), Positives = 154/189 (81%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
PAP +EG AV++G+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIAF DR EEF+ IN
Sbjct: 23 MPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN 82
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
T+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV E++G RGL
Sbjct: 83 TEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGL 142
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWKPGS+T+ DP+G
Sbjct: 143 FIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAG 202
Query: 539 SQEYFKTVN 547
+YF +N
Sbjct: 203 KLKYFDKLN 211
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-133
Identities = 127/188 (67%), Positives = 152/188 (80%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
KPAP++EG AV+NG+FK +KLS Y+G+Y+V FFYPLDFTFVCPTEIIAFSDR EF+ IN
Sbjct: 52 KPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN 111
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
T+V+ACS DS F+HLAW PR +GGLG M IP+LSD + I++ YGV E+ G RGL
Sbjct: 112 TEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGL 171
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIID+K LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWKPGS T+ DPSG
Sbjct: 172 FIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTIIPDPSG 231
Query: 539 SQEYFKTV 546
+YF +
Sbjct: 232 KLKYFDKM 239
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-133
Identities = 125/189 (66%), Positives = 154/189 (81%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
KPAP +EG AV++G+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIAF DR EEF+ IN
Sbjct: 66 KPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN 125
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
T+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV E++G RGL
Sbjct: 126 TEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGL 185
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEV PAGWKPGS+T+ DP+G
Sbjct: 186 FIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSETIIPDPAG 245
Query: 539 SQEYFKTVN 547
+YF +N
Sbjct: 246 KLKYFDKLN 254
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220 | Back alignment and structure |
|---|
Score = 383 bits (987), Expect = e-132
Identities = 121/206 (58%), Positives = 151/206 (73%)
Query: 342 LIVEQDQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP 401
L+ + D + A+ + AP F+G AVV+G+FK I L +KG+Y+VLFFYPLDFTFVCP
Sbjct: 14 LVPRGSHMLEDPAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCP 73
Query: 402 TEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461
TEIIAFSD+A EF +N +V+A S DSHFSHLAW N PR GGLG M I +LSD + I+
Sbjct: 74 TEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS 133
Query: 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVC 521
R YGVL E G+ RGLFIID ++ +++NDLPVGRSV+ETLRLV+AFQFV HGEV
Sbjct: 134 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVS 193
Query: 522 PAGWKPGSKTMKADPSGSQEYFKTVN 547
PA W P S T+K P+ S+EYF+ VN
Sbjct: 194 PANWTPESPTIKPHPTASREYFEKVN 219
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216 | Back alignment and structure |
|---|
Score = 383 bits (985), Expect = e-132
Identities = 107/189 (56%), Positives = 137/189 (72%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
K AP F+ AVV+G F + L +YKG+YVVL F PL FTFV PTEIIAFS+ A++F++
Sbjct: 27 KQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG 86
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
QV+ STDS +S LAW NIPR +GGLG + IP+L+D + S++R YGVL EE G+ RGL
Sbjct: 87 AQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGL 146
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIID K +R ITINDLPVGR+VDE LRLV+AFQ+ ++G V P W PG+ T+K
Sbjct: 147 FIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIKPTVED 206
Query: 539 SQEYFKTVN 547
S+EYF+ N
Sbjct: 207 SKEYFEAAN 215
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202 | Back alignment and structure |
|---|
Score = 379 bits (977), Expect = e-131
Identities = 126/190 (66%), Positives = 149/190 (78%), Gaps = 1/190 (0%)
Query: 359 KPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
PAP+F A++ NG FK + L+ YKG+++VLFFYP+DFTFVCPTEI FSDR +EF I
Sbjct: 10 HPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI 69
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+V+ACS DS +SHLAW +I R +GGLG M IPIL+DK+ I +SYGVL EE G+ YRG
Sbjct: 70 GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRG 129
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPS 537
LFIID KQNLRQIT+NDLPVGR VDE LRLV+AFQFV +HGEVCPA WKPG KTMK DP
Sbjct: 130 LFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGDKTMKPDPE 189
Query: 538 GSQEYFKTVN 547
S+EYF V
Sbjct: 190 KSKEYFGAVA 199
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-128
Identities = 83/193 (43%), Positives = 124/193 (64%), Gaps = 3/193 (1%)
Query: 356 ALEKPAPEFEGQAVV-NGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEE 413
A + AP F+ +AV + F + LS + G +YV+L+FYPLDFTFVCP+EIIA +
Sbjct: 1 AFQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDS 60
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
FK+ N +++ CS DS F+HLAW P ++GG+G++ ++SD S SIARSY VL E +
Sbjct: 61 FKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNE-SV 119
Query: 474 PYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMK 533
R +ID + ++ + +N+L +GRSVDE LRL+ A Q ++G+VCPA W+ G ++MK
Sbjct: 120 ALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESMK 179
Query: 534 ADPSGSQEYFKTV 546
G +Y +
Sbjct: 180 PSEEGVAKYLSNL 192
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222 | Back alignment and structure |
|---|
Score = 370 bits (953), Expect = e-127
Identities = 118/178 (66%), Positives = 139/178 (78%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
+PAPEF+GQAV+NG+FK I L Y+G+YVVLFFYP DFTFVCPTEIIAFSD+ EEF N
Sbjct: 44 RPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN 103
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
QVIACSTDS +SHLAW N+ R GGLG M IP+L+D+ I+++YGV +EE G +RGL
Sbjct: 104 CQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGL 163
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADP 536
FIID LRQITIND PVGRSVDETLRL+ AFQFV +HGEVCP WK G +K +
Sbjct: 164 FIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGIKVNQ 221
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213 | Back alignment and structure |
|---|
Score = 369 bits (950), Expect = e-127
Identities = 78/190 (41%), Positives = 121/190 (63%), Gaps = 3/190 (1%)
Query: 359 KPAPEFEGQAVV-NGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
K AP F+ +AV + F + L+Q+ G +YV+L+FYPLDFTFVCP+EIIA + F +
Sbjct: 25 KEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE 84
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
N +++ CS DS ++HLAW P KGG+G++ +LSD + SI++ Y VL ++ + R
Sbjct: 85 RNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDD-SVSLR 143
Query: 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADP 536
+ID ++ + +N+L +GRSVDE LR++ A Q ++G+VCPA W+ G +MK
Sbjct: 144 AFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKVSMKPSE 203
Query: 537 SGSQEYFKTV 546
G +Y T+
Sbjct: 204 EGVAQYLSTL 213
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221 | Back alignment and structure |
|---|
Score = 368 bits (947), Expect = e-126
Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 3/191 (1%)
Query: 359 KPAPEFEGQAV-VNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
K A F Q + N + N+ LS + GQ Y L FYPL++TFVCPTEII F+ ++F+
Sbjct: 29 KKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN 88
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
N +++ S DS +SHLAW N+P KGG+G++ ++SD + I+++Y VL + R
Sbjct: 89 KNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDN-SFALR 147
Query: 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADP 536
GLFIID +R T+NDLP+GR+V E LR + + V GEVCP WK G K K
Sbjct: 148 GLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQKAFKPTT 207
Query: 537 SGSQEYFKTVN 547
+Y N
Sbjct: 208 ESLIDYMNNAN 218
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198 | Back alignment and structure |
|---|
Score = 361 bits (928), Expect = e-124
Identities = 92/192 (47%), Positives = 120/192 (62%), Gaps = 4/192 (2%)
Query: 359 KPAPEFEGQAVVNGQ--FKNIKLSQYKGQY-VVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
K AP+F+ AV+ ++ +LS+ G+ V+LFF+P DFTFVCPTEIIAF R ++F
Sbjct: 5 KLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFH 64
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
+ VI S DS H AW N P KGG+G ++ P+++D + SI+R Y VL EE I
Sbjct: 65 EKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-AIAL 123
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RG F+ID +R INDLP+GR+ DE LR+V A EHGEVCPAGW+ G K MKA
Sbjct: 124 RGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKAT 183
Query: 536 PSGSQEYFKTVN 547
G EY K +
Sbjct: 184 HQGVAEYLKENS 195
|
| >1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188 | Back alignment and structure |
|---|
Score = 359 bits (925), Expect = e-124
Identities = 114/186 (61%), Positives = 144/186 (77%), Gaps = 1/186 (0%)
Query: 350 MRDASYALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFS 408
M + L PAPEF+ A++ NG FK + LS YKG+YVVLFFYP+DFTFVCPTEII FS
Sbjct: 1 MSCGAAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFS 60
Query: 409 DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLN 468
D A+ F +INT+VI+CS DS +SHL W ++ R KGGLG MAIP+L+DK+ +IAR+YGVL+
Sbjct: 61 DDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLD 120
Query: 469 EETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
E++G+ YRG+FIID LRQI IND+P+GR+V+E +RLV+A QFV EHGEVCPA WK G
Sbjct: 121 EDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPANWKKG 180
Query: 529 SKTMKA 534
K
Sbjct: 181 DAKKKE 186
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186 | Back alignment and structure |
|---|
Score = 348 bits (896), Expect = e-119
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 4/181 (2%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
F+ QA NG+F + +G++ V FFYP DFTFV PTE+ +D EE +K+
Sbjct: 5 TKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG 64
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
V + STD+HF+H AW + + + ++ D + ++ R++ + E+ G+ R
Sbjct: 65 VDVYSVSTDTHFTHKAWHSSSE---TIAKIKYAMIGDPTGALTRNFDNMREDEGLADRAT 121
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEH-GEVCPAGWKPGSKTMKADPS 537
F++D + ++ I + +GR + LR ++A Q+VA H GEVCPA WK G T+
Sbjct: 122 FVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSLD 181
Query: 538 G 538
Sbjct: 182 L 182
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187 | Back alignment and structure |
|---|
Score = 345 bits (888), Expect = e-118
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 5/182 (2%)
Query: 359 KPAPEFEGQAVVNGQ-FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
F QA +G+ F + + KG++ ++ FYP DF+FVCPTE+ E KK+
Sbjct: 5 TEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL 64
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+V + STD+HF H AW N +G + ++ D S +I+R + VLNEETG+ RG
Sbjct: 65 GVEVYSVSTDTHFVHKAWHE---NSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRG 121
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEH-GEVCPAGWKPGSKTMKADP 536
FIID ++ I IN +GR + V+A Q+V E+ GEVCPA W+ G +T+K
Sbjct: 122 TFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETLKPSL 181
Query: 537 SG 538
Sbjct: 182 DI 183
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195 | Back alignment and structure |
|---|
Score = 323 bits (831), Expect = e-109
Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 20/195 (10%)
Query: 359 KPAPEFEGQAVVNGQ------------FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
P ++ A++ G F I ++ G++ V+FF+P DFTFVCPTEI A
Sbjct: 8 DQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAA 67
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
FS +EF+ + Q++ S DS F+H W L + P+LSD ++++ GV
Sbjct: 68 FSKLNDEFEDRDAQILGVSIDSEFAHFQW---RAQHNDLKTLPFPMLSDIKRELSQAAGV 124
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
LN + G+ R FI+D ++ ++ VGR+VDE LR++ A Q E+C + W+
Sbjct: 125 LNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ----SDELCASNWR 179
Query: 527 PGSKTMKADPSGSQE 541
G T+ A
Sbjct: 180 KGDPTLDAGELLKAS 194
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220 | Back alignment and structure |
|---|
Score = 289 bits (743), Expect = 8e-96
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 10/194 (5%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
P F +A + +L +Y + + +LF +P DFT VC TE+ E+F K+
Sbjct: 7 ATFPNFTAKASGI--DGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL 64
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG----- 472
N ++I S +S SH W + G L IPI+ D+S +A +++E+
Sbjct: 65 NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGL 124
Query: 473 -IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKT 531
+ R LF I ++ ++ + GR+ E LR++++ Q P W G K
Sbjct: 125 PLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKC 184
Query: 532 MKADPSGSQEYFKT 545
P+ +
Sbjct: 185 CVI-PTLQDDEISK 197
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 3e-95
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
+ P FE + +K + G + VLF +P DFT V TE+ +FKK
Sbjct: 7 EVFPNFEADST----IGKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR 62
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGL-GDMAIPILSDKSMSIARSYGVLNEE------ 470
++IA S D+ H W + G+ GDM PI++D++ +A G+++ +
Sbjct: 63 GVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTG 122
Query: 471 TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSK 530
+ R +FII + L+ + GR+ E LR++ + Q A+ PA W+PG +
Sbjct: 123 MPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADWQPGDR 182
Query: 531 TMKADPS---GSQEYFKTVN 547
M ++ F +
Sbjct: 183 CMVVPGVSAEEAKTLFPNME 202
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249 | Back alignment and structure |
|---|
Score = 286 bits (735), Expect = 2e-94
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 7/191 (3%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
+ PE E +G K +G++ VLF +P DFT VC TE ++F+ R E+F+++
Sbjct: 9 ERFPEMEVTTD-HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG 67
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI-PYRG 477
+I S DS FSH+ W G+ + PI++D ++AR G+L+ E+ RG
Sbjct: 68 VDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRG 126
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKP----GSKTMK 533
+FI+D + +R + + +GR VDE LR+V+A + PA W G +
Sbjct: 127 VFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIV 186
Query: 534 ADPSGSQEYFK 544
P+ +
Sbjct: 187 PPPTTEDQARA 197
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 5e-93
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 15/197 (7%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP FE I+ + G + +LF +P DFT VC TE+ + A EF K
Sbjct: 9 DVAPNFEANTT----VGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR 64
Query: 418 NTQVIACSTDSHFSHLAWC---NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-- 472
N ++IA S DS HLAW N ++ + PI+ D++ +A G+L+
Sbjct: 65 NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDE 124
Query: 473 ----IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
+ R +F+ + L+ + GR+ DE LR+V + Q AE P WK G
Sbjct: 125 KGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDG 184
Query: 529 SKTMKADPSGSQEYFKT 545
M P+ +E K
Sbjct: 185 DSVMVL-PTIPEEEAKK 200
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 2e-66
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP+F + + + + L Y+G V+L F+PL FT +C E+ D EF+
Sbjct: 13 ATAPDFT---LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND 69
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD--KSMSIARSYGVLNEETGIPY 475
++ +A S +H W + G P+LSD +++++YGV NE+ GI
Sbjct: 70 DSAALAISVGPPPTHKIW----ATQSGFT---FPLLSDFWPHGAVSQAYGVFNEQAGIAN 122
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512
RG F++D +R + R + A
Sbjct: 123 RGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159
|
| >2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 9e-38
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 16/158 (10%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
+ AP+FE + + + K +KLS KG+ VVL FYP FT VC E+ F D +F ++N
Sbjct: 8 ELAPDFE---LPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN 64
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIP---- 474
V+ S D FS+ A+ + L ILSD + + + Y V E +P
Sbjct: 65 AVVLGISVDPPFSNKAF----KEHNKLN---FTILSDYNREVVKKYNVAWEFPALPGYVL 117
Query: 475 -YRGLFIIDDKQNLRQITINDLPVGRS-VDETLRLVQA 510
R +F+ID + +R ++D P DE ++V++
Sbjct: 118 AKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS 155
|
| >2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-33
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP+F + N F+ + L + +G+ VL F+P F+ VC E+ F D+ + +K
Sbjct: 10 KAPDFT---LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA 66
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY-- 475
N +V+A S DS + + +++ L +LSD + + + Y V +E+
Sbjct: 67 NAEVLAISVDSPWCLKKF----KDENRLA---FNLLSDYNREVIKLYNVYHEDLKGLKMV 119
Query: 476 --RGLFIIDDKQNLRQITINDLPVGRS-VDETLRLVQAFQ 512
R +FI+ + + D P+ DE +R
Sbjct: 120 AKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 159
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-28
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
A +F + L+ + G+ VL P T +C T+ F++ NT
Sbjct: 21 KALDFS---LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NT 75
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEETGIPYRGL 478
V+ S D F+ WC G G +LSD S R Y +L E + R +
Sbjct: 76 VVLTVSMDLPFAQKRWC------GAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAV 129
Query: 479 FIID 482
F++D
Sbjct: 130 FVLD 133
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-27
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 13/124 (10%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
AP+F V++ + L+ Y G+ ++ P T VC + F+ A +
Sbjct: 25 FAPDFT---VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKE---EG 78
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEETGIPYRGL 478
V+ S D F+ WC G + LSD + +S +YGV+ EE + R +
Sbjct: 79 IVLTISADLPFAQKRWC------ASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAV 132
Query: 479 FIID 482
F++D
Sbjct: 133 FVLD 136
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQY-VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP FEG A NG + I LS Y G++ +VL+FYP D T E AF D + K
Sbjct: 6 DKAPLFEGIAD-NG--EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY 62
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+ VI S+D SH + + K L ++SD I YG R
Sbjct: 63 DVVVIGVSSDDINSHKRF----KEKYKLP---FILVSDPDKKIRELYGAK-GFILP-ARI 113
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512
F+ID K +R I + + V+E L+ ++ +
Sbjct: 114 TFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIK 148
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 17/170 (10%)
Query: 349 AMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFS 408
AM DA L + G L + G ++V++FYP D T TE + F+
Sbjct: 3 AMTDAVLELPAATFDLPLSLS-GG--TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFN 59
Query: 409 DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLN 468
EF K +++ S DS SH + K G A P++SD ++ R++ V+
Sbjct: 60 ALLPEFDKAGAKILGVSRDSVKSHDNF----CAKQGF---AFPLVSDGDEALCRAFDVIK 112
Query: 469 EET--GIPYRGL----FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512
E+ G G+ F++ + + Q + V D L ++A
Sbjct: 113 EKNMYGKQVLGIERSTFLLSPEGQVVQA-WRKVKVAGHADAVLAALKAHA 161
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-25
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQ 420
APE VV + + K V+ P T VC TE F++ +
Sbjct: 27 APEAV---VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVD 81
Query: 421 VIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE---TGIPYRG 477
V S D F+ +C + + SD YGVL E GI R
Sbjct: 82 VTVVSMDLPFAQKRFC------ESFNIQNVTVASDFRYRDMEKYGVLIGEGALKGILARA 135
Query: 478 LFIID 482
+FIID
Sbjct: 136 VFIID 140
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 5e-24
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 25/189 (13%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
P F +V+ Q + L + ++ ++ R +
Sbjct: 27 YLPSFM---LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHL 83
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEE---TGIPY 475
++I + DS S G I +LS + + YGVL E +G
Sbjct: 84 KLIVITVDSPSSLARAR------HEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTS 137
Query: 476 RGLFIIDDKQNLR--QIT--INDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKT 531
+ + D + + D ++++ L+ + + A +
Sbjct: 138 PAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQ--------QAMAAEREAAEAR 189
Query: 532 MKADPSGSQ 540
+ D +
Sbjct: 190 QEQDAEREK 198
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 8e-24
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
AP+F V+ + L+ KG+ ++ P T VC + F++ A + +
Sbjct: 23 QAPDFT---VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DV 77
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEETGIPYRGL 478
V S D F+ WC G+ + LSD + MS ++GV +E + R +
Sbjct: 78 NVYTISADLPFAQARWC----GANGIDKV--ETLSDHRDMSFGEAFGVYIKELRLLARSV 131
Query: 479 FIID 482
F++D
Sbjct: 132 FVLD 135
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 1e-23
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
L LS Y Q++VL+FYP D T TE + F+ +F+
Sbjct: 26 TLNHSLLNHPLMLS-GS--TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFE 82
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--GI 473
+IN V+ S DS SH ++ K G P++SD + +++ V+ E+T G
Sbjct: 83 QINATVLGVSRDSVKSHDSF----CAKQGF---TFPLVSDSDAILCKAFDVIKEKTMYGR 135
Query: 474 PYRGL----FIIDDKQNLRQI 490
G+ F+I + +
Sbjct: 136 QVIGIERSTFLIGPTHRIVEA 156
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 2e-23
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQ 420
A +F +V ++ LS + G+ VL +P T VC + F+ A E + NT
Sbjct: 58 AKDFT---LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTV 112
Query: 421 VIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEE---TGIPYR 476
V+ S+D F+ +C GL ++ LS + ++YGV E G+ R
Sbjct: 113 VLCISSDLPFAQSRFC----GAEGLSNV--ITLSTLRGADFKQAYGVAITEGPLAGLTAR 166
Query: 477 GLFIID 482
+ ++D
Sbjct: 167 AVVVLD 172
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 5e-23
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
F +V ++ L+ + + VL +P T VC T + F+ +A + NT
Sbjct: 22 IVENFI---LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NT 76
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEE---TGIPY 475
V+ S D F+ +C G G +S ++ ++ GV + G+
Sbjct: 77 IVLCISADLPFAQARFC------GAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTS 130
Query: 476 RGLFIID 482
R + ++D
Sbjct: 131 RAVIVLD 137
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 6e-23
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
PAP F + G I Q++G+ V+L +P T VC T + F +RA
Sbjct: 23 PAPAFT---LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS---GA 76
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE---TGIPYR 476
V+ S D F+ +C G ++ S S YGV + G+ R
Sbjct: 77 TVLCVSKDLPFAQKRFC----GAEGTENV--MPASAFRDSFGEDYGVTIADGPMAGLLAR 130
Query: 477 GLFIID 482
+ +I
Sbjct: 131 AIVVIG 136
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Length = 159 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 9e-19
Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 17/159 (10%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
P P+ + +I L + + VV F YP T + F D +E K+
Sbjct: 11 DPIPDLSLLNE-DN--DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE 67
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
V S DS S + ++K L +LSD G R
Sbjct: 68 -YAAVFGLSADSVTSQKKF----QSKQNLP---YHLLSDPKREFIGLLGAKKTPLSGSIR 119
Query: 477 GLFIIDDKQNLRQITINDLP---VGRSVDETLRLVQAFQ 512
FI D L+ + P V + E L + + F+
Sbjct: 120 SHFIFVDG-KLKFKRVKISPEVSVNDAKKEVLEVAEKFK 157
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 5e-12
Identities = 82/566 (14%), Positives = 163/566 (28%), Gaps = 154/566 (27%)
Query: 27 EELSSESKDTQANIP---SAHD----SNPGAHEQNV-R-KIVSTLHNCILRL-PKDHL-- 74
+ +E + D N + NV R + L +L L P ++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 75 -------KQVKHIESTNDLSFQ------------------DFIVAMLCDLQEPVMSNQNA 109
K ++ Q + ++ ML L + N +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 110 ASWGYFNCKLST-WNEQILRN--HEPSFPLHLLPKIQPSGTIVGTLTRD-WLGINKDTPI 165
S N KL + LR + LL ++ + N
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------VL----LNVQ---NAKA-W 259
Query: 166 NVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDEMGASMNGGNCLATFVCTLQNWFKE 225
N A +L C +L T ++ + + +D ++ + + +
Sbjct: 260 N-AF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----KYLDC 313
Query: 226 FGFNVPQ----------NQIWAKL---INASDPINHIT--RHHSTLRV-----TPTLLGD 265
++P+ + I + + D H+ + + + P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 266 RHVIAESASV----THITIQNLGV--TKLFVALCEGIINNIHDIMNRSVLHRSGINRIIG 319
+ SV HI L + + + ++N +H S++ + I
Sbjct: 374 MF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTIS 427
Query: 320 IGSCLTRNHILQHYIERIYGL-QLIVEQDQAMRDASYALEKPAPEFEGQAVVN--G-QFK 375
I S L+ +E Y L + IV+ + ++ + P + Q + G K
Sbjct: 428 IPSIYLE---LKVKLENEYALHRSIVDHYNIPK--TFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435
NI+ + + ++F LDF F+ E +KI AW
Sbjct: 483 NIEHPERMTLFRMVF---LDFRFL---E-----------QKIRH-----------DSTAW 514
Query: 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495
G + + L + + Y N+ P + L +I N +
Sbjct: 515 N----ASGSILN----TLQQ--LKFYKPYICDND----PKYERLVNAILDFLPKIEENLI 560
Query: 496 PVGRSVDETLRLVQ-AFQFVAEHGEV 520
S + L++ A E +
Sbjct: 561 ---CS--KYTDLLRIALMA--EDEAI 579
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 45/285 (15%), Positives = 93/285 (32%), Gaps = 58/285 (20%)
Query: 72 DHLKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE 131
+++H+ L +D++V L NA++ G + K W+ ++L ++
Sbjct: 149 QAFGRLRHVV----LGAKDYVVLRLTG--RHATDRTNASTTGLYRPKDDAWHVELLADYG 202
Query: 132 PSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHS-DAI 187
L L+P++ G VG ++ G TP+ LGD + L DA
Sbjct: 203 F--SLDLMPRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDDEDAY 260
Query: 188 VNISTSAQI-AFIDE------------------------MGASMNGGNCLATFVCTLQNW 222
+++ T+ + + +N GN L W
Sbjct: 261 LHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNIL--------QW 312
Query: 223 FKE-FGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHI 278
G ++ + A+ L P L +R + ++ +
Sbjct: 313 ALTLVGHRPGEDCAEYFHMAAA--EVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGV 370
Query: 279 TIQNLGVTK--LFVALCEGIINNIHDIMNRSVLHRSGINRIIGIG 321
T T+ + +A+ EG ++ +L + + +G
Sbjct: 371 TGAT---TRAQILLAVLEGAALSLRWCAE--LLGMEKVGLLKVVG 410
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIV 59
MS + + DIGTT VK L D + S + G EQ+
Sbjct: 1 MSLAFYIATFDIGTTEVKAALADRDGG-LHFQRSIALETYGD-----GNGPVEQDAGDWY 54
Query: 60 STLHNCILRLPKDHL--KQVKHI 80
+ + + ++V I
Sbjct: 55 DAVQRIASSWWQSGVDARRVSAI 77
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 4e-11
Identities = 41/285 (14%), Positives = 76/285 (26%), Gaps = 63/285 (22%)
Query: 72 DHLKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE 131
+ + D+I +L E V+ A G+ + T ++
Sbjct: 152 AVFGAIATV-----CGSYDYINMLLTG--ERVVDRNWALEGGFIDLASGTVEADLVA--L 202
Query: 132 PSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHS-DAI 187
P +P P+ ++G +T + G+ P+ D S LA D +
Sbjct: 203 AHIPPSAVPPAHPTHRVLGAVTAEAAALTGLPTGLPVYGGAADHIASALAAGITRPGDVL 262
Query: 188 VNISTSAQI-AFIDE--------------------MGASMNGGNCLATFVCTLQNWFKE- 225
+ + I G G+ L NW +
Sbjct: 263 LKFGGAGDIIVASATAKSDPRLYLDYHLVPGLYAPNGCMAATGSAL--------NWLAKL 314
Query: 226 FGFNVPQN--QIWAKLINASDPINHITRHHSTLRVTPTLLGDR--HVIAES-ASVTHITI 280
+ L L P LG++ + + T +++
Sbjct: 315 LAPEAGEAAHAQLDALAAEVPA------GADGLVCLPYFLGEKTPIHDPFASGTFTGLSL 368
Query: 281 QNLGVTK--LFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIG 321
+ T+ L+ AL E + + VL G R
Sbjct: 369 SH---TRGHLWRALLEAVALAFRHHVA--VLDDIGHAPQRFFASD 408
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQN----VR 56
+ V+G+DIGTTS L+ ++ S+ T + P +PG E++
Sbjct: 4 AQGRQVIGLDIGTTSTIAILVRLPDT-VVAVASRPTTLSSP-----HPGWAEEDPAQWWD 57
Query: 57 KIVSTLHNCILRLPKDHLKQVKHI 80
+ L + + I
Sbjct: 58 NARAVLAELKTTAGES-DWRPGGI 80
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 8e-10
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 26/129 (20%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFF-----YPLDFTFVCPTEIIAFSDRAEE 413
AP F + NG K I+LS KG+ V L F P C E +++ +
Sbjct: 4 SDAPNFVLEDT-NG--KRIELSDLKGKGVFLNFWGTWCEP------CKKEFPYMANQYKH 54
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
FK +++A + S +A N ++ G + P++ D + +Y V + +
Sbjct: 55 FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----VNFPVVLDTDRQVLDAYDV----SPL 104
Query: 474 PYRGLFIID 482
P F+I+
Sbjct: 105 PT--TFLIN 111
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-09
Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 25/129 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
A F + NG K + L+ KG+Y+ + + P C E+ A + E+
Sbjct: 8 PSAASFSYPDI-NG--KTVSLADLKGKYIYIDVWATWCGP------CRGELPALKELEEK 58
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
+ + ++ S D + AW N+ G I + + +Y + GI
Sbjct: 59 YAGKDIHFVSLSCDK--NKKAWENMVTKDQLKG---IQLHMGTDRTFMDAYLI----NGI 109
Query: 474 PYRGLFIID 482
P ++D
Sbjct: 110 PR--FILLD 116
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 59/253 (23%)
Query: 109 AASWGYFNCKLSTWNEQILR----------NHEPSFPLHLLPKIQPSGTIVGTLTRDW-- 156
A+ Y++ + + ++ + +LP +
Sbjct: 199 ASGTIYYDAASNEYRRDLIAMVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIA 258
Query: 157 -LGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQI-AFIDE------------- 201
+ + GD + L D +++ TS A +
Sbjct: 259 GKNVEGGCLLAPGGGDNAMASLGLGMAVGDVSISLGTSGVAAAISENPTYDLTGAVSGFA 318
Query: 202 --------MGASMNGGNCLATFVCTLQNWFKE-FGFNVPQNQIWAKLINASDPINHITRH 252
+ ++NG L + + G + + AKL AS P
Sbjct: 319 DCTGHYLPLACTINGSRIL--------DAGRAALGVDYDE---LAKLAFASKP------G 361
Query: 253 HSTLRVTPTLLGDR--HVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLH 310
+ + + P G+R + +A+ + +T+ N L A EG++ + D + ++
Sbjct: 362 ANGITLVPYFDGERTPNRPNATATFSGMTLANTTRENLARAFVEGLLCSQRDCLE--LIR 419
Query: 311 RSG--INRIIGIG 321
G I RI+ IG
Sbjct: 420 SLGASITRILLIG 432
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
+V G+D T S KV + DA T E + + H P + S
Sbjct: 2 SLRTLVAGVDTSTQSCKVRVTDAETGELVRFGQ--------AKH---PNGTSVDPSYWWS 50
Query: 61 TLHNCILRLPKDHLKQVKHI 80
+ L V +
Sbjct: 51 AFQEAAEQAGG--LDDVSAL 68
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-09
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 29/130 (22%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEE 413
AP+F G +KLS G V LDF ++ C + +
Sbjct: 7 DKAPDFALPGK-TGV---VKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQAK 56
Query: 414 FKKINTQVIACSTDSHFSHLAWCN-IPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG 472
+K QV+A + D+ + + + D R YGV G
Sbjct: 57 YKAKGFQVVAVNLDA--KTGDAMKFLAQVP-----AEFTVAFDPKGQTPRLYGV----KG 105
Query: 473 IPYRGLFIID 482
+P F+ID
Sbjct: 106 MPT--SFLID 113
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 23/153 (15%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFF-----YPLDFTFVCPTEIIAFSDRAEE 413
AP G + G ++ L+ +KG+YV++ F C E
Sbjct: 7 SVAPAITGIDL-KG--NSVSLNDFKGKYVLVDFWFAGCSW------CRKETPYLLKTYNA 57
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
FK + STD W + + + D + SY + G
Sbjct: 58 FKDKGFTIYGVSTDR--REEDWKKA-IEEDKSYWNQVLLQKDDVKDVLESYCI----VGF 110
Query: 474 PYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506
P+ + ++D + + + + +V++ +
Sbjct: 111 PH--IILVDPEGKIVAKELRGDDLYNTVEKFVN 141
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-09
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 30/139 (21%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEE 413
+ F + +G + I L+ G V+ L F + CP E+
Sbjct: 15 EREASFSLTTI-DG--EVISLNNVGGDVVI-----LWFMAAW-CPSCVYMADLLDRLTEK 65
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI----------PILSDKSMSIARS 463
+++I+ I T L +M I+ S+
Sbjct: 66 YREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEK 125
Query: 464 YGVLNEETGIPYRGLFIID 482
+ V I Y + I+D
Sbjct: 126 FNV----RSIDY--IVIMD 138
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-09
Identities = 21/134 (15%), Positives = 34/134 (25%), Gaps = 31/134 (23%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEI---IAFSDR 410
A F +G L Q+ +Y +LF C I A
Sbjct: 9 TKALNFTYTLD-SG--VKGTLYQFPAEYTLLFINNPGCHA------CAEMIEGLKASPVI 59
Query: 411 AEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK--SMSIARSYGVLN 468
+V++ D W + DK + Y +
Sbjct: 60 NGFTAAKKLKVLSIYPDE--ELDEWKKHRNDFA----KEWTNGYDKELVIKNKNLYDL-- 111
Query: 469 EETGIPYRGLFIID 482
IP L+++D
Sbjct: 112 --RAIPT--LYLLD 121
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 6e-09
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 20/138 (14%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF----VCPTEIIAFSDRAEEF 414
+ AP+F +G K + LS +G+ V+ L FT VC E+
Sbjct: 11 EMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIWLK 62
Query: 415 KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIP 474
K N D ++ G + P+ D I Y + + GI
Sbjct: 63 HKDNADFALIGIDRDEPLEKVLAFAKSTG----VTYPLGLDPGADIFAKYAL--RDAGIT 116
Query: 475 YRGLFIIDDKQNLRQITI 492
+ID + + ++T
Sbjct: 117 R--NVLIDREGKIVKLTR 132
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-09
Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 25/129 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAEE 413
K AP F + +G K + + +G+ + ++F CP E+ A +
Sbjct: 6 KTAPAFSLPDL-HG--KTVSNADLQGKVTL-----INFWFPS-CPGCVSEMPKIIKTAND 56
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
+K N QV+A + + ++ G + ++ D ++ +++G
Sbjct: 57 YKNKNFQVLAVAQP-IDPIESVRQYVKDYG----LPFTVMYDADKAVGQAFGT----QVY 107
Query: 474 PYRGLFIID 482
P +I
Sbjct: 108 PT--SVLIG 114
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 21/127 (16%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEEFK 415
+FE V +G K +LS YKG+ V L F ++ C + + A+E
Sbjct: 2 VADFELMGV-DG--KTYRLSDYKGKKVY-----LKFWASW-CSICLASLPDTDEIAKEAG 52
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
+ S + + GL +P+L D S + +YGV P
Sbjct: 53 DDYVVLTVVSPGHK-GEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGV----RSYPT 107
Query: 476 RGLFIID 482
ID
Sbjct: 108 --QAFID 112
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 27/159 (16%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
K AP G L + +Y +LFF+ C E D +
Sbjct: 9 KKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDWWLK 59
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD--KSMSIARSYGVLNEET 471
+ QV A + + W R+K G + D +Y +
Sbjct: 60 NRAKGIQVYAANIER--KDEEWLKFIRSKKIGG---WLNVRDSKNHTDFKITYDI----Y 110
Query: 472 GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510
P L+++D + + I + + + + ++
Sbjct: 111 ATPV--LYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKT 147
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 71/302 (23%)
Query: 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE-PSFPLHLLPKI----Q 143
DF+ + S + + W+ + + KI +
Sbjct: 168 PDFLTWRATK--DETRSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVK 225
Query: 144 PSGTIVG-TLTRDW---LGINKDTPINVALGDLQCSVLATLQYHSDAIVNIS-------- 191
P G +G L++ +G+ T ++V++ D + L N +
Sbjct: 226 PMGAPLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIALI 285
Query: 192 --TSAQIAFIDE-----------------------MGASMNGGNCLATFVCT------LQ 220
TS + G G + + + L
Sbjct: 286 GGTSTAHMAMSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALL 345
Query: 221 NWFKEFGFNVPQ--NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESA----- 273
K G + + N I ++ + I +T + + P G+R A
Sbjct: 346 EQAKNKGETIYEALNYILRQMAGEPENIAFLTND---IHMLPYFHGNRSPRANPNLTGII 402
Query: 274 ---SVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNH 328
++ T +++ ++A + + I+ ++++G I+ ++ G T+N
Sbjct: 403 TGLKLST-TPEDM--ALRYLATIQALALGTRHIIET--MNQNGYNIDTMMASGG-GTKNP 456
Query: 329 IL 330
I
Sbjct: 457 IF 458
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIV 59
MS + +G+D+GT S + + D + S++ P EQ+ I
Sbjct: 1 MSLASYFIGVDVGTGSARAGVFDLQ-GRMVGQASREITMFKP-----KADFVEQSSENIW 54
Query: 60 STLHNCILRL 69
+ N +
Sbjct: 55 QAVCNAVRDA 64
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 42/284 (14%), Positives = 87/284 (30%), Gaps = 64/284 (22%)
Query: 72 DHLKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE 131
+ +Q+ + L +D++ + E +AA + + W++ +L+ +
Sbjct: 141 EIFRQIDKV-----LLPKDYLRLRMTG--EFASDMSDAAGTMWLDVAKRDWSDVMLQACD 193
Query: 132 PSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHS-DAI 187
+P + I G L + G+ P+ GD + + A+
Sbjct: 194 L--SRDQMPALYEGSEITGALLPEVAKAWGM-ATVPVVAGGGDNAAGAVGVGMVDANQAM 250
Query: 188 VNISTSAQI-AFIDE----------------------MGASMNGGNCLATFVCTLQNWFK 224
+++ TS A + M ++ +CL +W
Sbjct: 251 LSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCL--------DWAA 302
Query: 225 EFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQ 281
+ + +D + P L G+R +T Q
Sbjct: 303 KL-TGLSNVPALIAAAQQADE------SAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQ 355
Query: 282 NLGVTK--LFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIG 321
+ L A+ EG+ + D M+ V+H G + IG
Sbjct: 356 H---GPNELARAVLEGVGYALADGMD--VVHACGIKPQSVTLIG 394
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC 65
+GID+GT+ VKV L++ ++++++ + P +P EQ+ +
Sbjct: 2 YIGIDLGTSGVKVILLNEQGE-VVAAQTEKLTVSRP-----HPLWSEQDPEQWWQATDRA 55
Query: 66 ILRLPKDH-LKQVKHI 80
+ L H L+ VK +
Sbjct: 56 MKALGDQHSLQDVKAL 71
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
MS + ++G+D+GTT+ K L D N + ++S SK G E++ + I
Sbjct: 1 MSLKYIIGMDVGTTATKGVLYDING-KAVASVSKGYPLIQT-----KVGQAEEDPKLIFD 54
Query: 61 TLHNCILRLPKDHLKQVKHI 80
+ I L + ++ I
Sbjct: 55 AVQEIIFDLTQKIDGKIAAI 74
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 47/185 (25%)
Query: 71 KDH----LKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQI 126
K+ Q + + +++I+ L + V AA G N K TW++++
Sbjct: 141 KNKKTEVFSQAQKW-----IGIKEYIIFRLTG--KLVTDTTMAAGTGILNLKTLTWDQEL 193
Query: 127 LRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYH 183
L LPKI ++ + ++ LGI+ DT I + D S +
Sbjct: 194 LD--ILKIKKEQLPKIAQPTKVIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAID 251
Query: 184 S-DAIVNISTSAQI-AFIDE--------------------MGASMN-GGNCLATFVCTLQ 220
S +N+ TS I +D+ +G +N GG
Sbjct: 252 SDHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVF-------- 303
Query: 221 NWFKE 225
NW ++
Sbjct: 304 NWARQ 308
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-08
Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 27/132 (20%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP------TEIIAFSDRAE 412
A +F V +G N ++S+ K QY +LFFY D C E
Sbjct: 5 MKAADFTYVTV-HG--DNSRMSRLKAQYTMLFFYDPD----CSNCRKFEKLFAEIPAFVE 57
Query: 413 EFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK--SMSIARSYGVLNEE 470
+ +V+A D + W + +K + + Y +
Sbjct: 58 MVENGTLRVLAIYPDE--NREEWATKAVYMP----QGWIVGWNKAGDIRTRQLYDI---- 107
Query: 471 TGIPYRGLFIID 482
P ++++D
Sbjct: 108 RATPT--IYLLD 117
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-08
Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 23/129 (17%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
AP E + G+Y +L F+ + ++ +
Sbjct: 11 DLAPRIEFLGN-DA---KASFHNQLGRYTLLNFWAAYDAE------SRARNVQLANEVNK 60
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
F + + S D + + K + + Y +
Sbjct: 61 FGPDKIAMCSISMDE--KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL----RKG 114
Query: 474 PYRGLFIID 482
F+I+
Sbjct: 115 FK--NFLIN 121
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 8e-08
Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 20/139 (14%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAEE 413
P + + + + K + + + F ++ CP E+ A++
Sbjct: 16 VPHTMSTMKTA-DN--RPASVYLKKDKPTL-----IKFWASW-CPLCLSELGQAEKWAQD 66
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
K + +I ++ + GL +P+++D +IA++ + +
Sbjct: 67 AKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNI----SVY 122
Query: 474 PYRGLFIIDDKQNLRQITI 492
P +I ++++I
Sbjct: 123 PSW--ALIGKDGDVQRIVK 139
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 9e-08
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 29/129 (22%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEE 413
AP F+ + +G +N L+QY+G+ V+ ++F ++ CP E+ + +
Sbjct: 19 ALAPNFKLPTL-SG--ENKSLAQYRGKIVL-----VNFWASW-CPYCRDEMPSMDRLVKS 69
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
F K + V+A + + + R ++ LSD + + + YG +
Sbjct: 70 FPKGDLVVLAVNVEK-----RFPEKYRRAP----VSFNFLSDATGQVQQRYGA----NRL 116
Query: 474 PYRGLFIID 482
P FI+D
Sbjct: 117 PD--TFIVD 123
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 39/140 (27%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDR 410
L K P + + L G+ V L+F P C ++
Sbjct: 3 GLAKYLPGATNL-LSKS--GEVSLGSLVGKTVFLYFSASWCPP------CRGFTPVLAEF 53
Query: 411 AEEFKK-INTQVIACSTD-------SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462
E+ N +V+ S D ++ + W +P ++ + +
Sbjct: 54 YEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVS-----------ELGK 102
Query: 463 SYGVLNEETGIPYRGLFIID 482
++GV IP L I+
Sbjct: 103 TFGV----ESIPT--LITIN 116
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 45/158 (28%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDR 410
L+K P E +++ G+ V +F P +
Sbjct: 3 GLDKYLPGIEKLRR-GD--GEVEVKSLAGKLVFFYFSASWCPP------ARGFTPQLIEF 53
Query: 411 AEEFKK-INTQVIACSTDS-------HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462
++F + N +V+ C+ D +F+ + W +P + + +++
Sbjct: 54 YDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQS-----------EAVQKLSK 102
Query: 463 SYGVLNEETGIPYRGLFIIDDKQ------NLRQITIND 494
+ V IP L +D R + D
Sbjct: 103 HFNV----ESIPT--LIGVDADSGDVVTTRARATLVKD 134
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 29/138 (21%)
Query: 352 DASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF----VCPTEIIAF 407
E + + + + G L+ KG+ V+ +DFT + +A
Sbjct: 6 PEDKIKEASIIDIQLKDL-KG--NTRSLTDLKGKVVL-----IDFTVYNNAMSAAHNLAL 57
Query: 408 SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK---SMSIARSY 464
+ ++ ++ S D W N + + D S Y
Sbjct: 58 RELYNKYASQGFEIYQISLDG--DEHFWKTSADN------LPWVCVRDANGAYSSYISLY 109
Query: 465 GVLNEETGIPYRGLFIID 482
V T +P +F+++
Sbjct: 110 NV----TNLPS--VFLVN 121
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 26/159 (16%)
Query: 345 EQDQAMRDASYALE--KPAPEFEGQA----VVNGQFKNIKLSQYKGQYVVLFFYPLDFTF 398
Q D + LE AP+ +G K I L +G+ V++ F + +
Sbjct: 39 AQLSNCSDGAAQLESCGTAPDLKGITGWLNTPGN--KPIDLKSLRGKVVLIDF----WAY 92
Query: 399 VCPT---EIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPR--NKGGLGDMAIPIL 453
C I + +K VI T + N+ + G+ + PI
Sbjct: 93 SCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGI---SYPIA 149
Query: 454 SDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI 492
D + + +Y P ++ID +R I
Sbjct: 150 LDNNYATWTNYRN----RYWPA--EYLIDATGTVRHIKF 182
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 28/129 (21%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEE 413
+F + +G + +G+ V L F + CP E + S A
Sbjct: 2 DERLQFTATTL-SG--APFDGASLQGKPAV-----LWFWTPW-CPFCNAEAPSLSQVAAA 52
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
+ IA D A + + L+D I Y V
Sbjct: 53 NPAVTFVGIATRADVG----AMQSFVSKYN----LNFTNLNDADGVIWARYNV----PWQ 100
Query: 474 PYRGLFIID 482
P
Sbjct: 101 PA--FVFYR 107
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 22/142 (15%)
Query: 357 LEKPAPEFEGQAV-VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPT---EIIAFSDRAE 412
L +P PE G+ +NG + + + ++ F ++ C + ++ +
Sbjct: 3 LRQPMPELTGEKAWLNG--EVTREQLIGEKPTLIHF----WSISCHLCKEAMPQVNEFRD 56
Query: 413 EFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI--PILSDKSMSIARSYGVLNEE 470
+++ V+A L I K + I PI D ++ ++
Sbjct: 57 KYQD-QLNVVAVHMPRSEDDLDPGKI---KETAAEHDITQPIFVDSDHALTDAFEN---- 108
Query: 471 TGIPYRGLFIIDDKQNLRQITI 492
+P ++ D LR
Sbjct: 109 EYVPA--YYVFDKTGQLRHFQA 128
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 358 EKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAE 412
E PAP+F + NG + +KLS KGQ V+ ++F T+ CP EI +
Sbjct: 5 ENPAPDFTLNTL-NG--EVVKLSDLKGQVVI-----VNFWATW-CPPCREEIPSMMRLNA 55
Query: 413 EFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG 472
+++ S D +A R G +P+L D + + YG TG
Sbjct: 56 AMAGKPFRMLCVSIDEG-GKVAVEEFFRKTG----FTLPVLLDADKRVGKLYGT----TG 106
Query: 473 IPYRGLFIID 482
+P F+ID
Sbjct: 107 VPE--TFVID 114
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 27/136 (19%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAEEFK 415
+F + + +G + G+ V L F + CPT E A
Sbjct: 5 QLQFSAKTL-DG--HDFHGESLLGKPAV-----LWFWAPW-CPTCQGEAPVVGQVAASHP 55
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
++ +A D + + N L+D S+ ++GV T P
Sbjct: 56 EVTFVGVA-GLDQVPAMQEFVN------KYPVKTFTQLADTDGSVWANFGV----TQQPA 104
Query: 476 RGLFIIDDKQNLRQIT 491
+D N+ +
Sbjct: 105 --YAFVDPHGNVDVVR 118
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
+S+ + ID+G T KV L D + R + PS G +
Sbjct: 3 LSTGATIVIDLGKTLSKVSLWDLDGRML-------DRQVRPSIPLEIDGIRRLDAPDTGR 55
Query: 61 TLHNCILRLPKDHLKQV 77
L + + R + +
Sbjct: 56 WLLDVLSRYADHPVTTI 72
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 110 ASWG--YFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTP 164
++ + ++ R + I +G VG L G++ D
Sbjct: 171 LGCHSDLWDPQDGDFSPMAKRLGWAA----RFAPIVRAGDTVGALLPAIAERTGLSPDVQ 226
Query: 165 INVALGDLQCSVLATLQYHS 184
+ L D ++LA +
Sbjct: 227 VLAGLHDSNAALLAARGFAE 246
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 26/146 (17%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP---TEII-AFSDRAEEF 414
P E + Q VN + + +G+ VV+ F +CP +
Sbjct: 7 APLLELDVQEWVNH--EGLSNEDLRGKVVVVEV----FQMLCPGCVNHGVPQAQKIHRMI 60
Query: 415 KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI--PILSDK------SMSIARSYGV 466
+ QVI + F H K + + I P+ D S + Y +
Sbjct: 61 DESQVQVIGLHSV--FEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRL 118
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITI 492
G P + + D K +RQ+
Sbjct: 119 ----EGTPS--IILADRKGRIRQVQF 138
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 32/163 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
K + V+ G +I L G+ V +F P D +
Sbjct: 4 KKFFPYSTN-VLKGAAADIALPSLAGKTVFFYFSASWCPP------SRAFTPQLIDFYKA 56
Query: 414 FK-KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS-IARSYGVLNEET 471
K N +V+ S D S + + L A+P K M + + V
Sbjct: 57 HAEKKNFEVMLISWDE--SAEDFKDYYAKMPWL---ALPFEDRKGMEFLTTGFDV----K 107
Query: 472 GIPYRGLFIID-DKQNLRQITINDLPVGRSVDETLRLVQAFQF 513
IP L ++ D N+ IT R++ + F +
Sbjct: 108 SIPT--LVGVEADSGNI--ITTQ----ARTMVVKDPEAKDFPW 142
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 24/145 (16%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP---TEII-AFSDRAEEF 414
APE + Q N ++ L+ +G+ +V+ F +CP I F
Sbjct: 4 MKAPELQIQQWFNSA-TDLTLADLRGKVIVIEA----FQMLCPGCVMHGIPLAQKVRAAF 58
Query: 415 KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI--PILSDKS-----MSIARSYGVL 467
+ V+ T F H K L + I P+ D+ +Y +
Sbjct: 59 PEDKVAVLGLHTV--FEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQM- 115
Query: 468 NEETGIPYRGLFIIDDKQNLRQITI 492
G P L +ID +LR
Sbjct: 116 ---RGTPS--LLLIDKAGDLRAHHF 135
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} Length = 196 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 46/200 (23%)
Query: 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV---CPTEIIAFSDR- 410
+ L K AP F V++G ++L K + F+ CP +
Sbjct: 18 FPLGKQAPPFALTNVIDG--NVVRLEDVKSDAATVIM------FICNHCPF-VKHVQHEL 68
Query: 411 ---AEEFKKINTQVIA-CSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG- 465
A ++ +A S D+ + P L D++ +A++Y
Sbjct: 69 VRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDA 128
Query: 466 -------VLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHG 518
+ + + YRG +DD + N +PV + A + E
Sbjct: 129 ACTPDFYIFDRDLKCVYRGQ--LDDSRPN-----NGIPVTGES-----IRAALDALLEGR 176
Query: 519 EV---------CPAGWKPGS 529
V C WKP +
Sbjct: 177 PVPEKQKPSIGCSIKWKPSA 196
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 4/110 (3%)
Query: 108 NAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINV 167
NA + N W+E +L + G ++G + + V
Sbjct: 178 NATTTQLVNINSDDWDESLLA--WSGANKAWFGRPTHPGNVIGHWICPQGN--EIPVVAV 233
Query: 168 ALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDEMGASMNGGNCLATFVC 217
A D +V+A+ S A S + + + N A
Sbjct: 234 ASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITN 283
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQ--ANIPSAHDSNPGAHEQNVRKI 58
M+ + + +D+G +S +V L RE S ++ N + G +V +
Sbjct: 1 MTFRNCVAVDLGASSGRVMLARYE-RECRSLTLREIHRFNNGLHSQ---NGYVTWDVDSL 56
Query: 59 VSTLHNCILRLPKDHLKQVKHI 80
S + + ++ + I
Sbjct: 57 ESAIRLGLNKVCAAG-IAIDSI 77
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 31/134 (23%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVL-FFY----PLDFTFVCPTEIIAFSDRAEE 413
PAP F G V +G K + KG+ ++ FF P C +EI +
Sbjct: 12 TPAPSFSGVTV-DG--KPFSSASLKGKAYIVNFFATWCPP------CRSEIPDMVQVQKT 62
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-----KSMSIARSYGVLN 468
+ + + + N + +G + P++ ++ + G+
Sbjct: 63 WASRGFTFVGIAVNE--QLPNVKNYMKTQG----IIYPVMMATPELIRAFNGYIDGGI-- 114
Query: 469 EETGIPYRGLFIID 482
TGIP F+ID
Sbjct: 115 --TGIPT--SFVID 124
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 30/134 (22%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDFT----FVCPTEIIAFSDRAE 412
K AP F G + + S +++ +Y++ L+F P +
Sbjct: 9 KSAPYFSLPNE-KG--EKLSRSAERFRNRYLL-----LNFWASWCDPQPEANAELKRLNK 60
Query: 413 EFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM---SIARSYGVLN 468
E+KK N ++ S D AW + ++ + D + A+ Y +
Sbjct: 61 EYKKNKNFAMLGISLDI--DREAWETAIKKDT----LSWDQVCDFTGLSSETAKQYAI-- 112
Query: 469 EETGIPYRGLFIID 482
+P ++
Sbjct: 113 --LTLPT--NILLS 122
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} Length = 218 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 53/201 (26%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPT--EIIAFSDR--- 410
L A +F L+++K +L F+ ++ +
Sbjct: 33 TLGTRAADFVLPDAGG---NLFTLAEFKDSPALLVA------FISNRCPFVVLIREALAK 83
Query: 411 -AEEFKKINTQVIA-CSTDSHF----SHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464
A ++ V+A S D+ + + G P L D S S+A++Y
Sbjct: 84 FAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYG----YGFPYLKDASQSVAKAY 139
Query: 465 G--------VLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAE 516
G + + E + Y G DD + N V + D L A V +
Sbjct: 140 GAACTPDFFLYDRERRLVYHGQ--FDDARPG-----NGKDVTGA-D----LRAAVDAVLK 187
Query: 517 HGEV---------CPAGWKPG 528
+V C W G
Sbjct: 188 GKDVGTTQVPSIGCNIKWTAG 208
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 22/140 (15%), Positives = 52/140 (37%), Gaps = 26/140 (18%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAEE 413
F + + G ++I + KGQ +L F ++ CP E+ F +
Sbjct: 13 AVPAVFLMKTI-EG--EDISIPN-KGQKTIL-----HFWTSW-CPPCKKELPQFQSFYDA 62
Query: 414 FKKINTQVIACS-TDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG 472
+ +++ + +S + + + + PI+ D + + Y +
Sbjct: 63 HPSDSVKLVTVNLVNSEQNQQVVEDFIKANK----LTFPIVLDSKGELMKEYHI----IT 114
Query: 473 IPYRGLFIIDDKQNLRQITI 492
IP F++++K + + I
Sbjct: 115 IPT--SFLLNEKGEIEKTKI 132
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-05
Identities = 25/175 (14%), Positives = 50/175 (28%), Gaps = 46/175 (26%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDR 410
+ K E + Q + G+ V +F P C +
Sbjct: 23 GVAKHLGEAL---KLRKQADTADMDSLSGKTVFFYFSASWCPP------CRGFTPQLVEF 73
Query: 411 AEEFK-KINTQVIACSTDS-------HFSHLAWCNIPRNKGGLGDMAIPILSDKSMS-IA 461
E+ N ++I S D +++ + W ++IP + + +
Sbjct: 74 YEKHHDSKNFEIILASWDEEEDDFNAYYAKMPW------------LSIPFANRNIVEALT 121
Query: 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAE 516
+ Y V IP L + + +T R + + F + E
Sbjct: 122 KKYSV----ESIPT--LIGL-NADTGDTVTTR----ARHALTQDPMGEQFPWRDE 165
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 34/137 (24%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDF--TFVCP-----TEIIAFSD 409
K AP F G + I S +K + ++ ++F ++ +
Sbjct: 9 KYAPFFSLPNA-KG--EKITRSSDAFKQKSLL-----INFWASW-NDSISQKQSNSELRE 59
Query: 410 RAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM---SIARSYG 465
+++KK ++ S D W + + + + D +A+ Y
Sbjct: 60 IYKKYKKNKYIGMLGISLDV--DKQQWKDAIKRDT----LDWEQVCDFGGLNSEVAKQYS 113
Query: 466 VLNEETGIPYRGLFIID 482
+ IP ++
Sbjct: 114 I----YKIPA--NILLS 124
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 9e-05
Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 26/132 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
P+ + +G K KLS ++G+ +++ + P C E+ A + +
Sbjct: 38 LKLPDLAFEDA-DG--KPKKLSDFRGKTLLVNLWATWCVP------CRKEMPALDELQGK 88
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI---PILSDKSMSIARSYGVLNEE 470
N +V+A + D+ + + K L + + +D+ + + +
Sbjct: 89 LSGPNFEVVAINIDTR-------DPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRA 141
Query: 471 TGIPYRGLFIID 482
G+P ++D
Sbjct: 142 LGMPT--SVLVD 151
|
| >1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 Length = 267 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
+ ++GIDIG T +K ++D + L + +P+ + P + + V +V+
Sbjct: 9 HKNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFR-----VPTPQPATPESVAEAVALVVA 63
Query: 61 TL 62
L
Sbjct: 64 EL 65
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 3e-04
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 24/128 (18%)
Query: 364 FEGQAVVNGQFKNIKLSQY--KGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEEFKK 416
+G +V + ++ + +F P C +D E
Sbjct: 4 IQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPP------CRGFTPILADMYSELVD 57
Query: 417 INT--QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIP 474
+ ++I S+D S G +AIP S + ++ YG+ TGIP
Sbjct: 58 DSAPFEIIFVSSDR--SEDDMFQYMMESHGDW-LAIPYRSGPASNVTAKYGI----TGIP 110
Query: 475 YRGLFIID 482
L I+
Sbjct: 111 A--LVIVK 116
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 26/135 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVL-FFY----PLDFTFVCPTEIIAFSDRAEE 413
+ P+ G ++ + I LS ++ Q V+L + P C +E EE
Sbjct: 35 QQLPDIGGDSL-MEEGTQINLSDFENQVVILNAWGQWCAP------CRSESDDLQIIHEE 87
Query: 414 FKK------INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVL 467
+ V+ + + S + + G + P + D A S G +
Sbjct: 88 LQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDNG----LDYPSIYDPPFMTAASLGGV 142
Query: 468 NEETGIPYRGLFIID 482
+ IP ++D
Sbjct: 143 P-ASVIPT--TIVLD 154
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 100.0 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 100.0 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 100.0 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 100.0 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 100.0 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 100.0 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 100.0 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 100.0 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 100.0 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 100.0 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 100.0 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 100.0 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 100.0 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 100.0 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 100.0 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 100.0 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 100.0 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 100.0 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 100.0 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 100.0 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 100.0 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 100.0 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 100.0 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 100.0 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 100.0 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 100.0 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 100.0 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 100.0 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 100.0 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 100.0 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 100.0 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 100.0 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.98 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.97 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.97 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.97 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.97 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.96 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.96 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.96 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.95 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.94 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.94 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.93 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.92 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.92 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.92 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.92 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.92 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.91 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.91 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.91 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.91 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.91 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.91 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.91 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.9 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.9 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.9 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.89 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.89 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.89 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.89 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.89 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.88 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.88 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.87 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.86 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.86 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.86 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.86 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.86 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.86 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.85 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.85 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.85 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.85 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.85 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.85 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.85 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.85 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.85 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.85 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.84 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.84 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.84 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.84 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.84 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.84 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.84 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.84 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.83 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.83 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.83 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.83 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.83 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.83 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.83 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.83 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.83 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.83 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.82 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.82 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.82 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.82 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.82 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.82 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.82 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.81 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.81 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.8 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.8 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.8 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.67 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.79 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.77 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.77 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.76 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.75 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.75 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.73 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.71 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.52 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.37 | |
| 4h86_A | 199 | Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch | 99.37 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 99.33 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.3 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.28 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.18 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.18 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.15 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.14 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.07 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.05 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.04 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.04 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 98.98 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 98.96 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 98.96 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 98.96 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 98.96 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 98.95 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 98.94 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 98.94 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 98.94 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 98.93 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 98.93 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 98.93 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 98.92 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 98.92 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 98.91 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 98.91 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 98.91 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 98.91 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 98.89 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 98.87 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 98.87 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 98.87 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 98.87 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 98.87 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 98.87 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 98.86 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 98.86 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 98.85 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 98.85 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 98.84 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 98.84 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 98.84 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 98.83 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 98.83 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 98.83 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 98.83 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 98.83 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 98.83 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 98.82 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 98.82 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 98.81 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 98.81 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 98.81 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 98.8 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 98.8 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 98.8 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 98.79 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 98.79 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 98.78 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 98.77 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 98.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.77 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 98.76 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.23 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 98.75 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 98.72 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 98.72 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 98.72 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 98.71 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 98.71 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 98.68 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 98.66 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 98.65 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 98.65 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 98.64 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 98.63 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.63 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 98.63 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 98.59 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 98.59 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 98.58 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 97.94 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 98.52 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.51 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 98.5 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 98.5 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 98.5 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 98.5 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 98.5 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 98.47 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.44 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 98.41 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 98.41 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.38 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.33 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 98.33 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 98.31 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 98.27 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 98.27 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 98.26 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.19 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.13 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 98.12 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 98.12 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 98.12 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.08 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 98.08 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 98.04 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.02 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.01 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.01 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.0 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 97.99 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 97.88 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 97.88 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 97.85 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 97.84 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 97.81 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 97.72 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 97.59 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 97.5 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 97.48 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 97.43 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 97.34 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 97.28 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 97.2 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 97.2 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 97.19 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 97.16 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 97.11 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 97.09 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 97.09 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.02 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 96.97 | |
| 1zc6_A | 305 | Probable N-acetylglucosamine kinase; NESG, Q7NU07_ | 96.93 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 96.89 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 96.78 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 96.74 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 96.67 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 96.64 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 96.55 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 96.53 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 95.99 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 95.83 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 95.72 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 95.45 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 95.3 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 95.16 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 95.12 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 95.11 | |
| 2yhw_A | 343 | Bifunctional UDP-N-acetylglucosamine 2-epimerase/N | 95.08 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 94.88 | |
| 3epq_A | 302 | Putative fructokinase; SCRK, ADP binding, PSI2, MC | 94.87 | |
| 2aa4_A | 289 | Mannac kinase, putative N-acetylmannosamine kinase | 94.81 | |
| 2h3g_X | 268 | Biosynthetic protein; pantothenate kinase, anthrax | 94.78 | |
| 3htv_A | 310 | D-allose kinase, allokinase; NP_418508.1, structur | 94.67 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 94.6 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 94.38 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 94.35 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 94.26 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 94.04 | |
| 1zbs_A | 291 | Hypothetical protein PG1100; alpha-beta protein., | 94.01 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 93.99 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 93.93 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 93.59 | |
| 3mcp_A | 366 | Glucokinase; structural genomics, joint center for | 93.48 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 93.32 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 93.18 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 93.16 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 93.1 | |
| 1woq_A | 267 | Inorganic polyphosphate/ATP-glucomannokinase; tran | 92.82 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 92.74 | |
| 2q2r_A | 373 | Glucokinase 1, putative; ATPase hexose kinase fami | 92.68 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 92.66 | |
| 2yhx_A | 457 | Hexokinase B; transferase(phosphoryl,alcohol accep | 92.46 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 92.38 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 92.2 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 92.17 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 92.17 | |
| 3lm2_A | 226 | Putative kinase; structural genomics, joint center | 92.13 | |
| 1zxo_A | 291 | Conserved hypothetical protein Q8A1P1; NESG, BTR25 | 92.03 | |
| 1sz2_A | 332 | Glucokinase, glucose kinase; ATP-dependent, glucos | 91.6 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 91.56 | |
| 3zyy_X | 631 | Iron-sulfur cluster binding protein; iron-sulfur-b | 91.51 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 91.51 | |
| 3qbx_A | 371 | Anhydro-N-acetylmuramic acid kinase; acetate and s | 91.28 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 91.0 | |
| 3cqy_A | 370 | Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1 | 90.85 | |
| 1bdg_A | 451 | Hexokinase; phosphotransferase; HET: GLC; 2.60A {S | 90.6 | |
| 3djc_A | 266 | Type III pantothenate kinase; structural genomics, | 90.46 | |
| 1saz_A | 381 | Probable butyrate kinase 2; askha (acetate and sug | 89.88 | |
| 3l9v_A | 189 | Putative thiol-disulfide isomerase or thioredoxin; | 89.76 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 89.73 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 89.16 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 88.66 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 88.59 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 88.59 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 88.47 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 87.57 | |
| 1cza_N | 917 | Hexokinase type I; structurally homologous domains | 87.51 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 87.35 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 87.17 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 87.08 | |
| 3o8m_A | 485 | Hexokinase; rnaseh-like fold, glycolysis, glucose | 86.66 | |
| 3t69_A | 330 | Putative 2-dehydro-3-deoxygalactonokinase; structu | 86.45 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 85.95 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 84.77 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 84.33 | |
| 3ttc_A | 657 | HYPF, transcriptional regulatory protein; Zn finge | 83.72 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 82.85 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 82.58 | |
| 3l9s_A | 191 | Thiol:disulfide interchange protein; thioredoxin-f | 82.39 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 82.14 | |
| 3nuw_A | 295 | 2-OXO-3-deoxygalactonate kinase; structural genomi | 81.93 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 81.46 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 80.14 |
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-59 Score=499.54 Aligned_cols=333 Identities=21% Similarity=0.290 Sum_probs=278.4
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH---------------
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC--------------- 65 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~--------------- 65 (547)
|+|+|+||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+++..+
T Consensus 1 M~m~~~lgIDiGtts~K~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~I~~I 74 (504)
T 3ll3_A 1 MSLKYIIGMDVGTTATKGVLYDINGKA-VASVSKGYPLIQ-----TKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKIAAI 74 (504)
T ss_dssp -CCEEEEEEEECSSEEEEEEEETTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCCCEEEEEEecCCceEEEEEcCCCCE-EEEEEeecceec-----CCCCcEEECHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 888999999999999999999999998 999999887544 58999999999999865444
Q ss_pred ----------------------HhhCCchhhhhhceeccC--------------------------------------CC
Q psy224 66 ----------------------ILRLPKDHLKQVKHIEST--------------------------------------ND 85 (547)
Q Consensus 66 ----------------------i~~~d~r~~~~~~~i~~~--------------------------------------~~ 85 (547)
|.|+|+|+.++++.+... .+
T Consensus 75 gis~q~~~~v~~D~~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~ 154 (504)
T 3ll3_A 75 SWSSQMHSLIGLGSDDELLTNSITWADNCAKSIVQDAKNRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQKW 154 (504)
T ss_dssp EEEECSSCBEEECTTSCBSSCEECTTCCTTHHHHHHHHHHTHHHHHHHHHCCCSCTTSHHHHHHHHHHHCHHHHHHCCEE
T ss_pred EEECCCCcEEEECCCCCCcccceeCCccCHHHHHHHHHhccCHHHHHHHHCCCCCcccHHHHHHHHHHcChHHHHHHhhe
Confidence 578899987766655321 15
Q ss_pred cchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCC
Q psy224 86 LSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKD 162 (547)
Q Consensus 86 l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g 162 (547)
++++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++ +||++|
T Consensus 155 ~~~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~g 230 (504)
T 3ll3_A 155 IGIKEYIIFRLTG--KLVTDTTMAAGTGILNLKTLTWDQELLDIL--KIKKEQLPKIAQPTKVIFPIKTEYVKKLGIDSD 230 (504)
T ss_dssp ECHHHHHHHHHHS--CCEEEHHHHTTTTCBCTTTSSBCHHHHHHH--TCCGGGSCEEECTTCEECCCCHHHHHHHTCCTT
T ss_pred eCHHHHHHHHHhC--CcccchhHhhcccCeeCCCCCcCHHHHHHc--CCCHHHCCCeeCCcceeeccCHHHHHhcCCCcC
Confidence 7999999999999 999999999999999999999999999999 599999999999999999999987 999999
Q ss_pred CeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cccc----cccchhH----HHHHhHHHHHHHHhC
Q psy224 163 TPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGAS----MNGGNCL----ATFVCTLQNWFKEFG 227 (547)
Q Consensus 163 ~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~~----~~gg~~~----~~~~g~~~~w~~~~~ 227 (547)
+||++|+||++|+++|+|+. +|++++|+|||+++.++++ .+.. ..++.++ .+++|.+++|+++.+
T Consensus 231 ~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~ 310 (504)
T 3ll3_A 231 TKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVFNWARQTL 310 (504)
T ss_dssp CEEEEEEEHHHHHHHTTTCCSTTEEEEEESSSEEEEEEESSCCCCTTCCSEEEEEETTEEEEEEEESCSHHHHHHHHHHH
T ss_pred CCEEEEccHHHHHHHhCCCCCCCcEEEEechhhhheeeCCCcccCCCCceEEEEeCCCeEEEEeehhhHHHHHHHHHHHh
Confidence 99999999999999999998 7999999999999876532 1110 0111111 245677889999976
Q ss_pred CCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy224 228 FNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIM 304 (547)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~ 304 (547)
.... ...+++.+ .++++++++++++|+|||.|+|+|+|++ |+|+|++..| +++|++||++||++|.+|+++
T Consensus 311 ~~~~--~~~~~~~~---~a~~~~~g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~RAvlEgia~~~r~~~ 384 (504)
T 3ll3_A 311 FDAD--ETPQDFLD---VAQTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRMH-QKPEMARAVIEGIIFNLYDAA 384 (504)
T ss_dssp TCTT--CCHHHHHH---HHHTSCTTGGGCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccch--hHHHHHHH---HHhcCCCCCCCeEEecCccCCCCCCCCCccCeEEECCCCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4321 11222111 1335667899999999999999999975 8999999987 999999999999999999999
Q ss_pred hhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 305 NRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 305 ~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+ .+++.+ +++|+++||+ +||++|+|++||++|+||.++...+..+
T Consensus 385 ~--~l~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~e~~a 431 (504)
T 3ll3_A 385 S--NLIKNTKKPVAINATGGF-LKSDFVRQLCANIFNVPIVTMKEQQSGT 431 (504)
T ss_dssp H--HHHTTSCCCSEEEEESGG-GCSHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred H--HHHHcCCCCCEEEEeCch-hcCHHHHHHHHHhhCCeEEecCCCCchh
Confidence 9 477754 7899999998 9999999999999999999987666443
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-58 Score=491.24 Aligned_cols=333 Identities=17% Similarity=0.230 Sum_probs=272.3
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
|+|+||||+|||++|++|+|.+|++ +++.+.+++... +.+||.||||++||+++..+
T Consensus 6 ~~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~ 79 (508)
T 3ifr_A 6 GRQVIGLDIGTTSTIAILVRLPDTV-VAVASRPTTLSS-----PHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGG 79 (508)
T ss_dssp -CEEEEEEECSSEEEEEEEETTTEE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEE
T ss_pred CCEEEEEEecCcceEEEEECCCCCE-EEEEEEecceec-----CCCCceEECHHHHHHHHHHHHHHHHHhcCCChhheEE
Confidence 5799999999999999999999998 999999887654 57999999999999965544
Q ss_pred -----------------------HhhCCchhhhhhceeccC--------------------------------------C
Q psy224 66 -----------------------ILRLPKDHLKQVKHIEST--------------------------------------N 84 (547)
Q Consensus 66 -----------------------i~~~d~r~~~~~~~i~~~--------------------------------------~ 84 (547)
|.|.|+|+.++++.+... .
T Consensus 80 Igis~~~~~~v~~D~~G~~l~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 159 (508)
T 3ifr_A 80 ICVTGMLPAVVLLDDRGAVLRPSIQQSDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIAT 159 (508)
T ss_dssp EEEEECSSCBEEECTTSCBCSCEECTTCCCCHHHHHHHHHHSCHHHHHHHHSSCSSTTSHHHHHHHHHHHCHHHHHTCSE
T ss_pred EEEECCCCcEEEECCCCCCcccceeccccChHHHHHHHHhhccHHHHHHHHCCCCChhhHHHHHHHHHHcCHHHHHHHhh
Confidence 467888877665554311 1
Q ss_pred CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCC
Q psy224 85 DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINK 161 (547)
Q Consensus 85 ~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~ 161 (547)
+++++|||.|+||| +.++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++ +||++
T Consensus 160 ~l~~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~ 235 (508)
T 3ifr_A 160 VCGSYDYINMLLTG--ERVVDRNWALEGGFIDLASGTVEADLVALA--HIPPSAVPPAHPTHRVLGAVTAEAAALTGLPT 235 (508)
T ss_dssp EECHHHHHHHHHHC--CCCEEHHHHHHHTCEETTTTEECHHHHHTT--TSCGGGSCCEECTTSEEEECCHHHHHHHCCCT
T ss_pred hcCchHHHHHHhcC--CccccHhHhhcccCccCccCCCCHHHHHHc--CCCHHHCCCCcCCCCeeeccCHHHHHHhCCCC
Confidence 57899999999999 899999999999999999999999999999 599999999999999999999987 99999
Q ss_pred CCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhccc-----c-----cccccchhH---HHHHhHHHHHHHHhC
Q psy224 162 DTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDEM-----G-----ASMNGGNCL---ATFVCTLQNWFKEFG 227 (547)
Q Consensus 162 g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~~-----~-----~~~~gg~~~---~~~~g~~~~w~~~~~ 227 (547)
|+||++|+||++|+++|+|+. +|++++|+|||+++.++++. . ...++.+.+ ..++|.+++|+++.+
T Consensus 236 g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~G~~~~W~~~~~ 315 (508)
T 3ifr_A 236 GLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASATAKSDPRLYLDYHLVPGLYAPNGCMAATGSALNWLAKLL 315 (508)
T ss_dssp TCEEECCEEHHHHHHHHTTCCSTTEEEEEESSSEEEEECBSCCCCBTTBBCCBCSSTTCBCCEEEESSSHHHHHHHHHHH
T ss_pred CCeEEEECchHHHHHHhCCCCCCCcEEEEechhhhheeeCCCcccCCCcceeeeecCCceEEechhhhhHHHHHHHHHHH
Confidence 999999999999999999997 89999999999998765421 0 011222211 245678889999975
Q ss_pred CCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy224 228 FNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIM 304 (547)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~ 304 (547)
........++++.+. +++.++++++++|+|||.|+|+|+|++ |.|+|++..| +++|++||++||++|.+|+++
T Consensus 316 ~~~~~~~~~~~l~~~---a~~~~~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~rAvlEgia~~~~~~~ 391 (508)
T 3ifr_A 316 APEAGEAAHAQLDAL---AAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSH-TRGHLWRALLEAVALAFRHHV 391 (508)
T ss_dssp STTCTTHHHHHHHHH---HHTSCTTGGGCEEECCTTCCC----CCCCCCEEESCCTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCHHHHHHH---HhcCCCCCCCeEEecCCCCCCCCCCCCCcCEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 311110123333321 234567899999999999999999875 8999999987 999999999999999999999
Q ss_pred hhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 305 NRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 305 ~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+ .+++.| +++|+++||| +||++|+|++||++|+||.+++..+..+
T Consensus 392 ~--~l~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~e~~a 438 (508)
T 3ifr_A 392 A--VLDDIGHAPQRFFASDGG-TRSRVWMGIMADVLQRPVQLLANPLGSA 438 (508)
T ss_dssp H--HHHHHTCCCCEEEEESGG-GGCHHHHHHHHHHHTSCEEEEECCSTHH
T ss_pred H--HHHhcCCCCCEEEEeCCc-ccCHHHHHHHHHHhCCeEEecCCCCchH
Confidence 9 476655 6899999998 9999999999999999999988666443
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-57 Score=487.78 Aligned_cols=331 Identities=19% Similarity=0.240 Sum_probs=276.2
Q ss_pred CC-CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH--------------
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC-------------- 65 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~-------------- 65 (547)
|+ |+|+||||+||||+|++|+|.+|++ +++.+.+++... +.+|+.||||++||+++..+
T Consensus 1 ~~mm~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~I 74 (511)
T 3hz6_A 1 MSLAFYIATFDIGTTEVKAALADRDGGL-HFQRSIALETYG-----DGNGPVEQDAGDWYDAVQRIASSWWQSGVDARRV 74 (511)
T ss_dssp -CCCCEEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBS-----TTSSCCEECHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred CccccEEEEEEeCCCceEEEEECCCCCE-EEEEEeecceec-----CCCCCEEECHHHHHHHHHHHHHHHHhcCCChhHe
Confidence 54 6799999999999999999999998 999999887644 58899999999999865444
Q ss_pred -------------------------HhhCCchhhhhhceeccC-------------------------------------
Q psy224 66 -------------------------ILRLPKDHLKQVKHIEST------------------------------------- 83 (547)
Q Consensus 66 -------------------------i~~~d~r~~~~~~~i~~~------------------------------------- 83 (547)
|.|.|+|+.++++.+...
T Consensus 75 ~~Igis~q~~~~v~~D~~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~ 154 (511)
T 3hz6_A 75 SAIVLSGQMQNFLPLDQDHEPLHRAVLYSDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQAFGRL 154 (511)
T ss_dssp EEEEEEECCSCBEEECTTSCBSSCEECTTCCCCHHHHHHHHHHHCHHHHHHHHSSCCSTTSHHHHHHHHHHHCHHHHTTC
T ss_pred EEEEEecccccEEEECCCcCCCcCceecCCCCHHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhChHHHHHH
Confidence 457788876655544210
Q ss_pred -CCcc-hhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cC
Q psy224 84 -NDLS-FQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LG 158 (547)
Q Consensus 84 -~~l~-~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~G 158 (547)
.+++ ++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++ +|
T Consensus 155 ~~~l~~~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~l~~~~a~~~G 230 (511)
T 3hz6_A 155 RHVVLGAKDYVVLRLTG--RHATDRTNASTTGLYRPKDDAWHVELLADY--GFSLDLMPRLLEPGEQVGGVSALAARQTG 230 (511)
T ss_dssp CEEECSHHHHHHHHHHS--CCEECHHHHHHTTCEETTTTEECHHHHHHT--TCCGGGSCEECCTTSEEEECCHHHHHHHC
T ss_pred HHHhcCcHHHHHHHHhC--CceeeHhHhhcccceeCCCCCcCHHHHHHh--CCCHHHCCCCcCCCCcccccCHHHHHhhC
Confidence 1578 99999999999 999999999999999999999999999999 599999999999999999999987 99
Q ss_pred CCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-ccc-c------------cccchhH---HHHHhHHH
Q psy224 159 INKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-MGA-S------------MNGGNCL---ATFVCTLQ 220 (547)
Q Consensus 159 l~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-~~~-~------------~~gg~~~---~~~~g~~~ 220 (547)
|++|+||++|+||++|+++|+|+. +|++++|+|||+++.++++ ... . .++.+.. ..++|.++
T Consensus 231 l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~ 310 (511)
T 3hz6_A 231 FVSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNIL 310 (511)
T ss_dssp CCTTCEEECCEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEECCCCCSCCSSCCEEECSSSTTEEEEEEEESSSHHHH
T ss_pred CCCCCeEEEECchHHHHHHhCCCCCCCcEEEEecchhhheeecCCeecccCCCCceEEEEEecCCceEEEeehhhHHHHH
Confidence 999999999999999999999997 8999999999999876533 111 1 0111111 24567889
Q ss_pred HHHHHhCC--CCchhHHHHHHHhccCcccccccC---CCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHH
Q psy224 221 NWFKEFGF--NVPQNQIWAKLINASDPINHITRH---HSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVAL 292 (547)
Q Consensus 221 ~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~ 292 (547)
+|+++.+. ....++.++++++ +++++ +++++|+|||.|+|+|+|++ |+|+|++..| +++|++||+
T Consensus 311 ~W~~~~~~~~~~~~~~~l~~~a~------~~~~g~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~RAv 383 (511)
T 3hz6_A 311 QWALTLVGHRPGEDCAEYFHMAA------AEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGAT-TRAQILLAV 383 (511)
T ss_dssp HHHGGGGTCCTTSCSHHHHHHHH------HHHTTCCCCTTCEEEEESSCBCSSSCBSSCEEEEECCCTTC-CHHHHHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHH------hCCCCCCCCCCEEEeCCCCCCCCCCCCCccceEEEcCCCCC-CHHHHHHHH
Confidence 99999865 3223444444432 34567 89999999999999999986 7999999997 999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCchhhcHHHHHHHHHHhCCce-EEecchhhhh
Q psy224 293 CEGIINNIHDIMNRSVLHRSG-INRIIGIGSCLTRNHILQHYIERIYGLQL-IVEQDQAMRD 352 (547)
Q Consensus 293 ~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v-~~~~~~~~~~ 352 (547)
+||++|.+|++++ .+++ | +++|+++||| +||++|+|++||++|+|| .++...+..+
T Consensus 384 lEgia~~~~~~~~--~l~~-g~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~~e~~a 441 (511)
T 3hz6_A 384 LEGAALSLRWCAE--LLGM-EKVGLLKVVGGG-ARSEAWLRMIADNLNVSLLVKPDAHLHPL 441 (511)
T ss_dssp HHHHHHHHHHHHH--HHTG-GGCCEEEEESGG-GGCHHHHHHHHHHHTCEEEECCCGGGHHH
T ss_pred HHHHHHHHHHHHH--HHhc-CCCCEEEEeCch-hcCHHHHHHHHHHHCCeeEEecCCCCchH
Confidence 9999999999999 4766 5 8999999998 999999999999999999 8877666444
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=476.03 Aligned_cols=332 Identities=16% Similarity=0.218 Sum_probs=271.8
Q ss_pred CCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH----------------
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC---------------- 65 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~---------------- 65 (547)
+++|+||||+||||+|++|||.+|++ +++++.+++..+ |.+||+||||++||+++..+
T Consensus 2 ekkYvlgID~GTss~Ka~l~d~~G~~-va~~~~~~~~~~-----p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~~~I~ 75 (526)
T 3ezw_A 2 EKKYIVALDQGTTSSRAVVMDHDANI-ISVSQREFEQIY-----PKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIA 75 (526)
T ss_dssp -CCEEEEEEECSSEEEEEEECTTCCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred CceEEEEEEccccceeeeEEcCCCCE-EEEEEEecCccc-----CCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 47899999999999999999999998 999999997655 58999999999999855443
Q ss_pred -------------------------HhhCCchhhhhhceeccCC------------------------------------
Q psy224 66 -------------------------ILRLPKDHLKQVKHIESTN------------------------------------ 84 (547)
Q Consensus 66 -------------------------i~~~d~r~~~~~~~i~~~~------------------------------------ 84 (547)
|.|+|+|+.++++.+....
T Consensus 76 aIgis~q~~~~v~~D~~~G~pl~~ai~W~D~R~~~~~~~l~~~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~ 155 (526)
T 3ezw_A 76 AIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERA 155 (526)
T ss_dssp EEEEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHHHH
T ss_pred EEEEeCCCCCEEEEECCCCeEcccceecCCcchHHHHHHHHhhccHHHHHHHhCCCCCcccHHHHHHHHHHcCchHHHHH
Confidence 6788999877666553210
Q ss_pred ------CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccC
Q psy224 85 ------DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLG 158 (547)
Q Consensus 85 ------~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~G 158 (547)
+..+.+||.|+|||....++|+|+||+|+|||+++++||+++++.+ +|++++||+++++++++|+++.++ .
T Consensus 156 ~~~~~~~~~i~~~L~~~Lt~g~~~~td~s~As~t~l~d~~~~~w~~~ll~~~--gi~~~~LP~i~~~~~~~G~~~~~~-~ 232 (526)
T 3ezw_A 156 RRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVL--DIPREMLPEVRRSSEVYGQTNIDG-K 232 (526)
T ss_dssp HTTCEEEECHHHHHHHHHTTTSCCEEEHHHHTTSSSEETTTTEECHHHHHHH--TCCGGGCCEEECSEEEEEEECTTC-T
T ss_pred HHhhhhccchhHHHhhhhcCCCceEEEchhhccccCcCccccCcCHHHHHHc--CCCHHHCCCccccccccCccchhh-h
Confidence 2467889999999866788999999999999999999999999999 599999999999999999999875 2
Q ss_pred CCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-------ccc--------ccccchhH---HHHHhHH
Q psy224 159 INKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-------MGA--------SMNGGNCL---ATFVCTL 219 (547)
Q Consensus 159 l~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-------~~~--------~~~gg~~~---~~~~g~~ 219 (547)
+..|+||++|++|++|+++|+|+. +|++.+|+|||+++.+.+. .+. ...+.+.+ ..++|.+
T Consensus 233 ~~~gipV~~g~gD~~aa~~G~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~eg~~~~~G~~ 312 (526)
T 3ezw_A 233 GGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGAS 312 (526)
T ss_dssp TSCCEEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHH
T ss_pred cCCCCcEEEEcchHHHHhhhccccccceeEEEeccCeeEecccCCccccccccceeeeeeccCCcceeeeHHHHHHHHHH
Confidence 345789999999999999999998 8999999999998765531 000 00011111 1346778
Q ss_pred HHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHH
Q psy224 220 QNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGI 296 (547)
Q Consensus 220 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egi 296 (547)
++||++.+.........+.+. ..+++++|++|+|||.|+|+|+|++ |+|+||+..| +++||+||++||+
T Consensus 313 ~~Wl~~~~~~~~~~~~~~~~~-------~~~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Glt~~~-~~~~i~RAvlEgi 384 (526)
T 3ezw_A 313 IQWLRDEMKLINDAYDSEYFA-------TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGV-NANHIIRATLESI 384 (526)
T ss_dssp HHHHHHTSCCCCSSSCHHHHH-------TTSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHH-------hccCCCCCeEEeCCCCCCCCCCCCcccCeEEecCCCCC-CHHHHHHHHHHHH
Confidence 899999864433322222222 2356889999999999999999986 8999999998 9999999999999
Q ss_pred HHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 297 INNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 297 a~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
+|.+|++++. +++ .| +++|+++||| +||++|+|++||++|+||.++...+..+.
T Consensus 385 a~~~r~~le~--l~~~~g~~~~~i~v~GGg-aks~~~~Qi~ADvlg~pV~~~~~~E~~al 441 (526)
T 3ezw_A 385 AYQTRDVLEA--MQADSGIRLHALRVDGGA-VANNFLMQFQSDILGTRVERPEVREVTAL 441 (526)
T ss_dssp HHHHHHHHHH--HHHHHCCCCSEEEEESGG-GGCHHHHHHHHHHHTSEEEEESCCCHHHH
T ss_pred HHHHHHHHHH--HHHhcCCCCCEEEEECch-hhCHHHHHHHHHHHCCEEEeCCCCchHHH
Confidence 9999999994 654 55 7899999998 99999999999999999999887765443
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=469.79 Aligned_cols=331 Identities=19% Similarity=0.279 Sum_probs=271.9
Q ss_pred CC-CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH--------------
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC-------------- 65 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~-------------- 65 (547)
|. |+|+||||+|||++|++|+|.+|++ +++.+.+++..+ +.+|+.||||++||+.+..+
T Consensus 1 m~~~~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~ 74 (506)
T 3h3n_X 1 MAEKNYVMAIDQGTTSSRAIIFDRNGKK-IGSSQKEFPQYF-----PKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEA 74 (506)
T ss_dssp -CCCCEEEEEEECSSEEEEEEEETTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCCCCEEEEEEcCCCceEEEEECCCCCE-EEEEEEecCccC-----CCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 64 6899999999999999999999998 999998887654 47999999999999865443
Q ss_pred ---------------------------HhhCCchhhhhhceeccC-----------------------------------
Q psy224 66 ---------------------------ILRLPKDHLKQVKHIEST----------------------------------- 83 (547)
Q Consensus 66 ---------------------------i~~~d~r~~~~~~~i~~~----------------------------------- 83 (547)
|.|.|+|+.++++.+...
T Consensus 75 I~~Igis~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 154 (506)
T 3h3n_X 75 IAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQE 154 (506)
T ss_dssp EEEEEEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCCCTTSHHHHHHHHHHHSTTHHH
T ss_pred eEEEEeeCCcccEEEEeCCCCeECCCceEecCcchHHHHHHHHhccCHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHH
Confidence 568899887766554321
Q ss_pred ---C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc
Q psy224 84 ---N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW 156 (547)
Q Consensus 84 ---~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~ 156 (547)
. +++++|||.|+|||..++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~~~~~~ 232 (506)
T 3h3n_X 155 KADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIHKLEWDQEILDLL--NIPSSMLPEVKSNSEVYGHTRSYR 232 (506)
T ss_dssp HHHTTCEEEECHHHHHHHHHTTTSCCEEEHHHHHTTTSEETTTTEECHHHHHHT--TCCGGGCCEEECSEEEEEECCGGG
T ss_pred HHhcCCeEEecHHHHHHHHhcCCceeeeEHHHhhhhhCeecCCCCcCHHHHHHc--CcCHHHCCceecCCCcceeeChHH
Confidence 0 3458999999999943478999999999999999999999999999 599999999999999999999987
Q ss_pred -cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc--c-----ccc------ccccc--hhH---HHHH
Q psy224 157 -LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID--E-----MGA------SMNGG--NCL---ATFV 216 (547)
Q Consensus 157 -~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~--~-----~~~------~~~gg--~~~---~~~~ 216 (547)
+| +|+||++|++|++|+++|+|+. +|++++|+|||+++.+.. + .+. ..++. +.+ .+++
T Consensus 233 ~lg--~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 310 (506)
T 3h3n_X 233 FYG--SEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVA 310 (506)
T ss_dssp TTT--CCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEETCCCSCCTTSEEEEEEEETTEEEEEEEEEECCS
T ss_pred hcC--CCCeEEEECCcHHHHHHhCCCCCCCcEEEEecchheeeeecCCccccCCCceEEEeeeecCCCCEEEEecchhhH
Confidence 77 7999999999999999999997 899999999999765432 1 111 11111 111 2456
Q ss_pred hHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHH
Q psy224 217 CTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALC 293 (547)
Q Consensus 217 g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~ 293 (547)
|.+++|+++.+.....++.+++++.. ++ .+++++|+|||.|+|+|+|++ |.|+|++..| +++||+||++
T Consensus 311 G~~~~W~~~~~~~~~~~~~l~~~a~~------~~-~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~RAvl 382 (506)
T 3h3n_X 311 GSAIQWLRDGLRMIETSPQSEELAAK------AK-GDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGT-TKEDFVRATL 382 (506)
T ss_dssp SHHHHHHHHTSCCCSSTTHHHHHHTT------CC-SCSCCEEECCTTCBCTTTCBTTCCCEEECCCTTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHhc------CC-CCCceEEeccccCCCCCccCCCCCEEEEccCCCC-CHHHHHHHHH
Confidence 78899999986433344555555432 23 348999999999999999975 8999999997 9999999999
Q ss_pred HHHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 294 EGIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 294 Egia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
||++|.+|++++ .+++ .| +++|+++||| +||++|+|++||++|+||.++...+..+
T Consensus 383 Egia~~~r~~~~--~l~~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~e~~a 441 (506)
T 3h3n_X 383 QAVAYQSKDVID--TMKKDSGIDIPLLKVDGGA-AKNDLLMQFQADILDIDVQRAANLETTA 441 (506)
T ss_dssp HHHHHHHHHHHH--HHHHHHCSCCCEEEEESGG-GGCHHHHHHHHHHHTSEEEECSSSCHHH
T ss_pred HHHHHHHHHHHH--HHHHhcCCCCCEEEEeccc-ccCHHHHHHHHHHhCCeEEecCCCcchh
Confidence 999999999999 4766 45 7899999998 9999999999999999999987665443
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=470.63 Aligned_cols=331 Identities=14% Similarity=0.168 Sum_probs=266.8
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH---------------
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC--------------- 65 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~--------------- 65 (547)
|+++|+||||+|||++|++|+|.+|++ +++.+.+++..+ |.+|+.||||++||+.+..+
T Consensus 23 MM~~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I 96 (520)
T 4e1j_A 23 MMGGYILAIDQGTTSTRAIVFDGNQKI-AGVGQKEFKQHF-----PKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDI 96 (520)
T ss_dssp CCSCEEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred HhhCeEEEEEeCCcceEEEEECCCCCE-EEEEEEeccccc-----CCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccE
Confidence 445799999999999999999999998 999988887654 47899999999999865443
Q ss_pred --------------------------HhhCCchhhhhhceeccC------------------------------------
Q psy224 66 --------------------------ILRLPKDHLKQVKHIEST------------------------------------ 83 (547)
Q Consensus 66 --------------------------i~~~d~r~~~~~~~i~~~------------------------------------ 83 (547)
|.|.|.|+.++++.+...
T Consensus 97 ~~Igis~~g~~~v~~D~~~G~~l~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~ 176 (520)
T 4e1j_A 97 AAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVR 176 (520)
T ss_dssp EEEEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSSCSSTTSHHHHHHHHHHHSTTHHHH
T ss_pred EEEEEeCCcceEEEEECCCCeECccccccccCCHHHHHHHHHhcccHHHHHHHHCCCCCchhHHHHHHHHHHcChHHHHH
Confidence 457788877665554311
Q ss_pred --C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeeccccc
Q psy224 84 --N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWL 157 (547)
Q Consensus 84 --~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~ 157 (547)
. +++++|||.|+|||...+++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|+++++
T Consensus 177 ~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~~~~~-- 252 (520)
T 4e1j_A 177 AAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVL--RVPKEMLPEVKDCAADFGVTDPS-- 252 (520)
T ss_dssp HHTTCEEEEEHHHHHHHHHTTTCCCEEEHHHHTTSSSEETTTTEECHHHHHHH--TCCGGGSCEEECSBSCCCBCCHH--
T ss_pred HhcCCeEecCHHHHHHHHhcCCCeeeecHHHhhhhcccccccCCCCHHHHHHc--CCCHHHCCceecCCCceeeeChh--
Confidence 0 2357899999999932389999999999999999999999999999 59999999999999999999874
Q ss_pred CCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc--c-----cccc------ccc--chhH---HHHHhH
Q psy224 158 GINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID--E-----MGAS------MNG--GNCL---ATFVCT 218 (547)
Q Consensus 158 Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~--~-----~~~~------~~g--g~~~---~~~~g~ 218 (547)
||++|+||++|++|++|+++|+|+. +|++++|+|||+++.+.+ + .+.. ..+ .+.+ ..++|.
T Consensus 253 ~l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~ 332 (520)
T 4e1j_A 253 LFGAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGA 332 (520)
T ss_dssp HHTSCCBEEEECCHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHH
T ss_pred hCCCCCeEEEECCcHHHHHHhCCCCCCCcEEEEecCchheEEecCCccccCCCceeeEEeEecCCCceEEEcchHhhHHH
Confidence 6678999999999999999999997 899999999999765432 1 1110 111 1111 245678
Q ss_pred HHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHH
Q psy224 219 LQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEG 295 (547)
Q Consensus 219 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Eg 295 (547)
+++|+++.+.....++.+++++. + .+++++++|+|||.|+|+|+|++ |.|+|++..| +++||+||++||
T Consensus 333 ~~~W~~~~~~~~~~~~~l~~~a~------~-~~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~RAvlEg 404 (520)
T 4e1j_A 333 AVQWLRDGLKVIKAAPDTGSLAE------S-ADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNT-GPAEFARAALEA 404 (520)
T ss_dssp HHHHHHHTTCCC-----CHHHHH------T-SCTTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHHHh------c-CCCCCcEEEEcCccCCCCCCCCCCCCEEEecccCCC-CHHHHHHHHHHH
Confidence 89999998643333334444432 2 24789999999999999999975 8999999997 999999999999
Q ss_pred HHHHHHHhhhhhhhhhc----C-CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 296 IINNIHDIMNRSVLHRS----G-INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 296 ia~~~~~~~~~~~l~~~----g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
++|.+|++++ .+++. | +++|+++||+ +||++|+|++||++|+||.++...+..+
T Consensus 405 ia~~~r~~l~--~l~~~~~~~g~~~~i~~~GGg-aks~~~~Qi~ADvlg~pV~~~~~~e~~a 463 (520)
T 4e1j_A 405 VCYQTRDLLE--AMHKDWRRNGNDTVLRVDGGM-VASDWTMQRLSDLLDAPVDRPVILETTA 463 (520)
T ss_dssp HHHHHHHHHH--HHHHHCC-----CCEEEESGG-GGCHHHHHHHHHHHTSCEEEESCCCHHH
T ss_pred HHHHHHHHHH--HHHHhhccCCCcceEEEeCcc-ccCHHHHHHHHHHhCCeEEecCCCccHH
Confidence 9999999999 46654 4 7899999998 9999999999999999999987666443
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=464.42 Aligned_cols=329 Identities=16% Similarity=0.255 Sum_probs=270.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
++|+||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 5 ~~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~I~~ 78 (501)
T 3g25_A 5 EKYILSIDQGTTSSRAILFNQKGEI-AGVAQREFKQYF-----PQSGWVEHDANEIWTSVLAVMTEVINENDVRADQIAG 78 (501)
T ss_dssp CCEEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEE
T ss_pred ccEEEEEEeCccceEEEEEcCCCCE-EEEEEeeccccc-----CCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEE
Confidence 4699999999999999999999998 899998886644 58899999999999865443
Q ss_pred ------------------------HhhCCchhhhhhceeccC--------------------------------------
Q psy224 66 ------------------------ILRLPKDHLKQVKHIEST-------------------------------------- 83 (547)
Q Consensus 66 ------------------------i~~~d~r~~~~~~~i~~~-------------------------------------- 83 (547)
|.|+|+|+.++++.+...
T Consensus 79 Igis~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 158 (501)
T 3g25_A 79 IGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAE 158 (501)
T ss_dssp EEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCSSTTSHHHHHHHHHHHSTTHHHHHH
T ss_pred EEEECCcCcEEEEECCCCeECCCceeeccCChHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhCHHHHHHHh
Confidence 568888887666554321
Q ss_pred C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc-cC
Q psy224 84 N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW-LG 158 (547)
Q Consensus 84 ~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~-~G 158 (547)
. +++++|||.|+|||..++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|+++++. +|
T Consensus 159 ~~~~l~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~~~~~~~~g 236 (501)
T 3g25_A 159 NGDLLFGTIDTWLVWKLSGKAAHITDYSNASRTLMFNIHDLEWDDELLELL--TVPKNMLPEVKASSEVYGKTIDYHFYG 236 (501)
T ss_dssp TTCEEEEEHHHHHHHHHTTTSCCEEEHHHHTTSSSEETTTTEECHHHHHHH--TCCGGGCCEEECSEEEEEECCGGGTTT
T ss_pred cCCeEEecHHHHHHHHhcCCCeeeeeHHHhhcccCeeCCCCCCCHHHHHHh--CcCHHHCCceecCCCceeccchHHhCC
Confidence 0 2458999999999954588999999999999999999999999999 599999999999999999999875 55
Q ss_pred CCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc--c-----ccc------cccc--chhH---HHHHhHH
Q psy224 159 INKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID--E-----MGA------SMNG--GNCL---ATFVCTL 219 (547)
Q Consensus 159 l~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~--~-----~~~------~~~g--g~~~---~~~~g~~ 219 (547)
+|+||++|++|++|+++|+|+. +|++++|+|||+++.+.. + .+. ..++ .+.+ .+++|.+
T Consensus 237 --~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~ 314 (501)
T 3g25_A 237 --QEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGDKAVKSESGLLTTIAYGIDGKVNYALEGSIFVSGSA 314 (501)
T ss_dssp --CCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCSTHH
T ss_pred --CCCeEEEECccHHHHHHhCCCCCCCcEEEEccchhheeeecCCccccCCCCeEEEeeEecCCccEEEEecccccHHHH
Confidence 8999999999999999999997 799999999999865432 1 111 0111 1111 1456788
Q ss_pred HHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHH
Q psy224 220 QNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGI 296 (547)
Q Consensus 220 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egi 296 (547)
++|+++.+.....++.++++++. ++ .+++++|+|||.|+|+|+|++ |.|+|++..| +++|++||++||+
T Consensus 315 ~~W~~~~~~~~~~~~~l~~~a~~------~~-~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~RAvlEgi 386 (501)
T 3g25_A 315 IQWLRDGLRMINSAPQSESYATR------VD-STEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGT-EKEHFIRATLESL 386 (501)
T ss_dssp HHHHHHTSCCCSSGGGHHHHHTT------SS-CCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHhh------CC-CCCeEEEecccccCCCCCCCCCCCEEEEccCCCC-CHHHHHHHHHHHH
Confidence 99999986543344555555432 22 358999999999999999875 7999999987 9999999999999
Q ss_pred HHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 297 INNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 297 a~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+|.+|++++ .+++ .| +++|+++||+ +||++|+|++||++|+||.++...+..+
T Consensus 387 a~~~~~~~~--~l~~~~g~~~~~i~~~GG~-aks~~~~Qi~Adv~g~pV~~~~~~e~~a 442 (501)
T 3g25_A 387 CYQTRDVME--AMSKDSGIDVQSLRVDGGA-VKNNFIMQFQADIVNTSVERPEIQETTA 442 (501)
T ss_dssp HHHHHHHHH--HHHHHSSCCCSEEEEESGG-GGCHHHHHHHHHHHTSEEEEESCCCHHH
T ss_pred HHHHHHHHH--HHHHhcCCCCcEEEEecch-hcCHHHHHHHHHHhCCceEecCCCcchH
Confidence 999999999 4765 55 7899999998 9999999999999999999887666443
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-54 Score=463.32 Aligned_cols=324 Identities=17% Similarity=0.181 Sum_probs=266.8
Q ss_pred CC-CceEEEEEeCCceeEEEEEe-cCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-------------
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLID-ANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC------------- 65 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d-~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~------------- 65 (547)
|+ ++|+||||+|||++|++|+| ++|++ +++.+.++ +++.||||++||+++..+
T Consensus 1 m~~~~~~lgIDiGtts~ka~l~d~~~G~i-~~~~~~~~-----------~g~~e~d~~~~~~~i~~~l~~~~~~~~I~~I 68 (515)
T 3i8b_A 1 MSLRTLVAGVDTSTQSCKVRVTDAETGEL-VRFGQAKH-----------PNGTSVDPSYWWSAFQEAAEQAGGLDDVSAL 68 (515)
T ss_dssp -CCSCEEEEEEECSSEEEEEEEETTTCCE-EEEEEEEC-----------CSSSEECTHHHHHHHHHHHHHTTCSTTEEEE
T ss_pred CCCCcEEEEEEeccccEEEEEEECCCCeE-EEEEEEeC-----------CCCceECHHHHHHHHHHHHHhcCCccCceEE
Confidence 65 68999999999999999999 89998 88887665 367999999999976554
Q ss_pred ----------------------HhhCCchhhhhhceec----c----------------C--------------------
Q psy224 66 ----------------------ILRLPKDHLKQVKHIE----S----------------T-------------------- 83 (547)
Q Consensus 66 ----------------------i~~~d~r~~~~~~~i~----~----------------~-------------------- 83 (547)
|.|+|.|+.++++.+. . .
T Consensus 69 gis~q~~~~v~~D~~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~ 148 (515)
T 3i8b_A 69 AVGGQQHGMVILDNQGNVIRDAMLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVA 148 (515)
T ss_dssp EEEECSSCBEEECTTSCBCSCEECTTCCTTHHHHHHHHHHHHCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHHHHHH
T ss_pred EEeCCcceEEEECCCCCCcCCcceecCCCHHHHHHHHHHhcCcccccccccccccchhHHHHHHHHCCCCCchhHHHHHH
Confidence 5789999765443321 0 0
Q ss_pred --------------CCcchhhHHHHHHhCCCC-------------CccccccccccccccccCCCccHHHHHhc-CCCCC
Q psy224 84 --------------NDLSFQDFIVAMLCDLQE-------------PVMSNQNAASWGYFNCKLSTWNEQILRNH-EPSFP 135 (547)
Q Consensus 84 --------------~~l~~~d~l~~~LtG~~~-------------~~~d~s~As~tgl~d~~~~~W~~~ll~~~-g~~i~ 135 (547)
.+++++|||.|+||| + +++|+|+||+|+|||+++++|++++|+.+ | ++
T Consensus 149 Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG--~~~~~~~~~~~~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~~g--i~ 224 (515)
T 3i8b_A 149 WVAENEPENVKKIAAICLPHDWLSWRIAG--YGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAMVLE--AA 224 (515)
T ss_dssp HHHHHCHHHHTTCSEEECHHHHHHHHHTT--CCCCCTTSCCCGGGCEEEHHHHTTSSSEETTTTEECHHHHHHHHH--HH
T ss_pred HHHHcChHHHHHHheecCHHHHHHHHhcC--CCcccccccccccceeecHHHhhcccCeeCCcCccCHHHHHhhcC--CC
Confidence 157899999999999 6 68999999999999999999999999996 5 77
Q ss_pred -----------CCCCCCcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc
Q psy224 136 -----------LHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID 200 (547)
Q Consensus 136 -----------~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~ 200 (547)
+++||+++++++++|++++++ +||++|+||++|+||++|+++|+| . +|++++|+|||+++.+++
T Consensus 225 ~~~~~~~~~~~~~~LP~i~~~~~~~G~v~~~~A~~~Gl~~g~pV~~g~~D~~aa~lG~g-~~~g~~~~s~GTs~~~~~~~ 303 (515)
T 3i8b_A 225 EGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDNAMASLGLG-MAVGDVSISLGTSGVAAAIS 303 (515)
T ss_dssp HCHHHHHHHHHHSBCCEEECTTCCCSSCCCTTTTTTTSTTCCEECCCEEHHHHHHHHTT-CCTTEEEEEESSSEEEEECB
T ss_pred cccccccccchHHHCCCCcCCcCcccCcCHHHHHHhCCCCCCeEEEECchHHHHHhhCC-CCCCcEEEEechhhhhhccc
Confidence 789999999999999999987 999999999999999999999999 6 899999999999987553
Q ss_pred c------cccc----cccchhH----HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcc
Q psy224 201 E------MGAS----MNGGNCL----ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDR 266 (547)
Q Consensus 201 ~------~~~~----~~gg~~~----~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r 266 (547)
+ .+.. ...+.++ ..++|.+++|+++.+. . +++.+++++. ++++++++++|+|||.|+|
T Consensus 304 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~gg~~l~w~~~~~~-~-~~~~l~~~a~------~~~~g~~gl~~lP~~~Ger 375 (515)
T 3i8b_A 304 ENPTYDLTGAVSGFADCTGHYLPLACTINGSRILDAGRAALG-V-DYDELAKLAF------ASKPGANGITLVPYFDGER 375 (515)
T ss_dssp SSCCCCTTSCSEEEECSSSSEEEEEEESCSTHHHHHHHHHHT-C-CHHHHHHHHH------HSCTTGGGCEEECCTTCBT
T ss_pred CccccCCCCcEEeeecCCCCEEEeeecccHHHHHHHHHHHhC-C-CHHHHHHHHH------hCCCCCCCeEEecCCCCCc
Confidence 2 1110 0112111 2446778899999753 2 3445555543 3567889999999999999
Q ss_pred cCCCC--CceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCce
Q psy224 267 HVIAE--SASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQL 342 (547)
Q Consensus 267 ~p~~~--~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v 342 (547)
+|++. +|.|+|++..|++++|++||++||++|.+|++++ .+++.| +++|+++||+ +||++|+|++||++|+||
T Consensus 376 ~P~~~~arg~~~Gl~~~~~~~~~l~RAvlEgia~~~r~~l~--~l~~~g~~~~~i~~~GGg-aks~~~~Qi~ADvlg~pV 452 (515)
T 3i8b_A 376 TPNRPNATATFSGMTLANTTRENLARAFVEGLLCSQRDCLE--LIRSLGASITRILLIGGG-AKSEAIRTLAPSILGMDV 452 (515)
T ss_dssp TTTBTTCCCEEESCCTTTCSHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCCCEEEEESGG-GGCHHHHHHHHHHHTSCE
T ss_pred CCCCcCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCCCEEEEECch-hcCHHHHHHHHHHhCCce
Confidence 99762 3899999998658999999999999999999999 477766 6899999998 999999999999999999
Q ss_pred EEecchhhhh
Q psy224 343 IVEQDQAMRD 352 (547)
Q Consensus 343 ~~~~~~~~~~ 352 (547)
.++...+..+
T Consensus 453 ~~~~~~e~~a 462 (515)
T 3i8b_A 453 TRPATDEYVA 462 (515)
T ss_dssp EEECCCCHHH
T ss_pred EecCCcccHH
Confidence 9987666443
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-54 Score=458.54 Aligned_cols=324 Identities=19% Similarity=0.252 Sum_probs=262.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC------------------- 65 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~------------------- 65 (547)
++||||+|||++|++|+|.+|++ ++..+.+++... +.+|+.|||+++||+.+..+
T Consensus 1 ~~lgiDiGtt~~k~~l~d~~g~~-l~~~~~~~~~~~-----p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~i~~Igis 74 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNEQGEV-VAAQTEKLTVSR-----PHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIA 74 (484)
T ss_dssp CEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHSCCTTCCEEEEE
T ss_pred CEEEEEecCcccEEEEECCCCCE-EEEEEecccccc-----CCCCCEeECHHHHHHHHHHHHHHHHHhCCccceEEEEEc
Confidence 47999999999999999999998 999988886544 58899999999999865544
Q ss_pred -------------------HhhCCchhhhhhceeccC------------------------------------CCcchhh
Q psy224 66 -------------------ILRLPKDHLKQVKHIEST------------------------------------NDLSFQD 90 (547)
Q Consensus 66 -------------------i~~~d~r~~~~~~~i~~~------------------------------------~~l~~~d 90 (547)
|.|.|.|+.++++.+... .+++++|
T Consensus 75 ~~~~~~v~~D~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~l~~~d 154 (484)
T 2itm_A 75 GQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKD 154 (484)
T ss_dssp ECSSCBEEECTTCCBCSCEECTTCCTTHHHHHHHHHHCTTHHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCCEEECHHH
T ss_pred CCcCcEEEECCCcCCCcccceecccCcHHHHHHHHHhHHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhheeCcHH
Confidence 457788876655543210 1468999
Q ss_pred HHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeEEe
Q psy224 91 FIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINV 167 (547)
Q Consensus 91 ~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~ 167 (547)
||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++ +||+ |+||++
T Consensus 155 ~l~~~LTG--~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lp~i~~~~~~~G~~~~~~a~~~Gl~-g~pV~~ 229 (484)
T 2itm_A 155 YLRLRMTG--EFASDMSDAAGTMWLDVAKRDWSDVMLQAC--DLSRDQMPALYEGSEITGALLPEVAKAWGMA-TVPVVA 229 (484)
T ss_dssp HHHHHHHS--CCEEEHHHHHTTTCEETTTTEECHHHHHTT--TCCGGGSCEEECTTSEEEECCHHHHHHHTSC-CCEEEC
T ss_pred HHHHHHhC--CceeeHHHhhccccccCCCCCcCHHHHHHc--CCCHHHCCCccCCcceeeccCHHHHHHhCCC-CCeEEE
Confidence 99999999 999999999999999999999999999999 599999999999999999999886 9999 999999
Q ss_pred cCCchhhhhhccccc-CCCcEEEeccchhhhhhccc------cc------ccccchhH---HHHHhHHHHHHHHhCCCCc
Q psy224 168 ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDEM------GA------SMNGGNCL---ATFVCTLQNWFKEFGFNVP 231 (547)
Q Consensus 168 g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~~------~~------~~~gg~~~---~~~~g~~~~w~~~~~~~~~ 231 (547)
|+||++|+++|+|+. +|++++|+|||+++.+..+. .. ..++.+.+ ..++|.+++|+++.+.. .
T Consensus 230 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~-~ 308 (484)
T 2itm_A 230 GGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-S 308 (484)
T ss_dssp CEEHHHHHHHHHTCCSTTCEEEEESSSEEEEEECSSCCCCCSSSCEEEECSSTTCEEEEEEECCHHHHHHHHHHHTTC-C
T ss_pred EchHHHHHHHhCCCCCCCcEEEEccchheeEEecCCCccCcccceEEeecccCCeeeeeehhhhHHHHHHHHHHhcCc-c
Confidence 999999999999998 89999999999988654320 00 01221111 24578889999997632 2
Q ss_pred hhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q psy224 232 QNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSV 308 (547)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~ 308 (547)
.++...+. +++.++++++++|+|||.|+|.|+|++ |.|+|++..+ +++|++||++||++|.+|++++ .
T Consensus 309 ~~~~~~~~------a~~~~~~~~gl~~lP~~~G~r~P~~~~~a~g~~~Gl~~~~-~~~~~~rAvlEgia~~~~~~~~--~ 379 (484)
T 2itm_A 309 NVPALIAA------AQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQH-GPNELARAVLEGVGYALADGMD--V 379 (484)
T ss_dssp SHHHHHHH------GGGCCTTSCCCEEEEEEC--------CCEEEEEEEEETTC-CHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred cHHHHHHH------HhcCCCCCCCeEEeCCCCCCCCCCCCCCCceEEEcCCCCC-CHHHHHHHHHHHHHHHHHHHHH--H
Confidence 22333222 234567899999999999999999986 7999999987 9999999999999999999999 4
Q ss_pred hhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 309 LHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 309 l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
+++.| +++|+++||+ +||+.|+|++||++|+||.+++..+.
T Consensus 380 l~~~g~~~~~i~~~GG~-a~s~~~~Qi~Adv~g~pV~~~~~~e~ 422 (484)
T 2itm_A 380 VHACGIKPQSVTLIGGG-ARSEYWRQMLADISGQQLDYRTGGDV 422 (484)
T ss_dssp HHTTTCCCSCEEEESGG-GCCHHHHHHHHHHHCCCEEEESCTTS
T ss_pred HHHcCCCcceEEEEecc-ccCHHHHHHHHHHhCCeEEeCCCCCc
Confidence 76655 6899999998 99999999999999999999887664
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-53 Score=452.10 Aligned_cols=328 Identities=19% Similarity=0.259 Sum_probs=270.4
Q ss_pred CCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH----------------
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC---------------- 65 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~---------------- 65 (547)
+|+++||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 1 M~~~~lgiDiGtt~~k~~l~d~~g~~-~~~~~~~~~~~~-----p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~i~ 74 (497)
T 2zf5_O 1 MEKFVLSLDEGTTSARAIIFDRESNI-HGIGQYEFPQHY-----PRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIA 74 (497)
T ss_dssp CCCEEEEEEECSSEEEEEEECTTCCE-EEEEEEECCCBC-----CSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred CCcEEEEEecCCchhEEEEECCCCCE-EEEEEeccceec-----CCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEE
Confidence 15689999999999999999999998 999999987544 57899999999999865443
Q ss_pred ------------------------HhhCCchhhhhhceecc---------C----------------------------C
Q psy224 66 ------------------------ILRLPKDHLKQVKHIES---------T----------------------------N 84 (547)
Q Consensus 66 ------------------------i~~~d~r~~~~~~~i~~---------~----------------------------~ 84 (547)
|.|.|.|+.++++.+.. + .
T Consensus 75 ~Igis~~~~~~v~~D~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 154 (497)
T 2zf5_O 75 AIGVTNQRETTLVWDKDGKPLYNAIVWQCRRTAEMVEEIKREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEK 154 (497)
T ss_dssp EEEEEECSSCEEEECTTCCBSSCEECTTCCTTHHHHHHHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHHHT
T ss_pred EEEEecCCCcEEEECCCCCCcccceeecccCcHHHHHHHHhhhHHHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHhc
Confidence 46788887765543321 0 1
Q ss_pred ----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCC
Q psy224 85 ----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGIN 160 (547)
Q Consensus 85 ----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~ 160 (547)
+++++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|+++++.+|
T Consensus 155 ~~~~~~~~~d~l~~~LTG--~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~~~~~G~~~~~~~g-- 228 (497)
T 2zf5_O 155 GEVMFGTVDTFLIYRLTG--EHVTDYSNASRTMLFNIKKLDWDDELLELF--DIPESVLPEVRESSEVYGYTKKELLG-- 228 (497)
T ss_dssp TCCEEEEHHHHHHHHHHS--CCEEEHHHHTTSSSEETTTTEECHHHHHHT--TCCGGGCCEEECSEEEEEECCHHHHS--
T ss_pred CCCEEEcHHHHHHHHHhC--CeeeeHHHhhhhcCccCCCCCcCHHHHHHc--CcCHHHCCCcCCCCCeeeecCHHHcC--
Confidence 45789999999999 999999999999999999999999999999 59999999999999999999988788
Q ss_pred CCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhccc------ccc------ccc-chhH----HHHHhHHHHH
Q psy224 161 KDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDEM------GAS------MNG-GNCL----ATFVCTLQNW 222 (547)
Q Consensus 161 ~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~~------~~~------~~g-g~~~----~~~~g~~~~w 222 (547)
+|+||++|++|++|+++|+|+. +|++++|+|||+++.+.++. +.. ..+ +.++ ..++|.+++|
T Consensus 229 ~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~w 308 (497)
T 2zf5_O 229 AEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYSDNLLTTIAWGLNGRVSYALEGSIFVTGAAVQW 308 (497)
T ss_dssp SCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEETCCCCCTTSEEEEEEEETTEEEEEEEEEESCSHHHHHH
T ss_pred CCCeEEEEccHHHHHHHhCCCCCCCcEEEEcchhheeeEECCCCccCCCCcEEEEEEEcCCCCEEEEechhhhHHHHHHH
Confidence 8999999999999999999997 89999999999998665321 110 111 0111 1346788999
Q ss_pred HHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHH
Q psy224 223 FKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINN 299 (547)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~ 299 (547)
+++.+.....++.+++++. ++ +++++++|+|||.|+|+|+|++ |.|+|++..| +++|++||++||++|.
T Consensus 309 ~~~~~~~~~~~~~l~~~a~------~~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~rAvlEgia~~ 380 (497)
T 2zf5_O 309 LRDGIKIIKHASETEELAT------KL-ESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGT-GREHLARATLEAIAYL 380 (497)
T ss_dssp HHHTSCCCSCGGGHHHHHT------TS-SSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHh------hC-CCCCceEEecCcCCCCCCCCCCCCCEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence 9997643333344444432 22 3688999999999999999975 7999999987 9999999999999999
Q ss_pred HHHhhhhhhhhhc-CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 300 IHDIMNRSVLHRS-GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 300 ~~~~~~~~~l~~~-g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+|++++. +++. .+++|+++||+ +||+.|+|++||++|+||.++...+..+
T Consensus 381 ~~~~l~~--l~~~~~~~~i~~~GG~-a~s~~~~Qi~Adv~g~pV~~~~~~e~~a 431 (497)
T 2zf5_O 381 TRDVVDE--MEKLVQIKELRVDGGA-TANDFLMQFQADILNRKVIRPVVKETTA 431 (497)
T ss_dssp HHHHHHH--HTTTSCCCCEEEESGG-GGCHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred HHHHHHH--HHhcCCcceEEEeCcc-ccCHHHHHHHHhhcCCeEEEcCCCcchH
Confidence 9999994 6654 47899999998 9999999999999999999987766443
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=450.04 Aligned_cols=328 Identities=18% Similarity=0.257 Sum_probs=268.0
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
|+++||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 1 M~~~lgiDiGtT~~k~~l~d~~g~i-~~~~~~~~~~~~-----p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~ 74 (495)
T 2dpn_A 1 MAFLLALDQGTTSSRAILFTLEGRP-VAVAKREFRQLY-----PKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLA 74 (495)
T ss_dssp --CEEEEEECSSEEEEEEECTTSCE-EEEEEEECCEEC-----SSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred CcEEEEEeeCCcceEEEEECCCCCE-EEEEEEeeceec-----CCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCcccEEE
Confidence 3689999999999999999999998 899998886544 47899999999999865444
Q ss_pred ------------------------HhhCCchhhhhhceeccC--------------------------------------
Q psy224 66 ------------------------ILRLPKDHLKQVKHIEST-------------------------------------- 83 (547)
Q Consensus 66 ------------------------i~~~d~r~~~~~~~i~~~-------------------------------------- 83 (547)
|.|.|.|+.++++.+...
T Consensus 75 Igis~~~~~~~~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 154 (495)
T 2dpn_A 75 LGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAE 154 (495)
T ss_dssp EEEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHTSCCSCTTSHHHHHHHHHHHSSSHHHHHH
T ss_pred EEEeCCCccEEEEECCCCcCCccceeecccChHHHHHHHHhccchhHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHh
Confidence 457788876555443210
Q ss_pred C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCC
Q psy224 84 N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGI 159 (547)
Q Consensus 84 ~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl 159 (547)
. +++++|||.|+|||..++++|+|+||+|+|||+++++|++++|+.+ +|++++||+++++++++|+++++.+|
T Consensus 155 ~~~~~~~~~~d~l~~~LTG~~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~~~~~G~~~~~~~G- 231 (495)
T 2dpn_A 155 GGGVAFGTVDTWLIWNLTGGKVHATDPTNASRTLLFNLHTLAWDPELLEAL--GIPAALLPEVRPSDGDFGETLPELLG- 231 (495)
T ss_dssp HTCEEEECHHHHHHHHHTTTSCCEECHHHHTTSSSEETTTTEECHHHHHHT--TCCSTTCCEECCTTSCCCBCCHHHHS-
T ss_pred cCCcEEECHHHHHHHHhcCCCeEEEehHHhHhhcCccCccCCcCHHHHHHc--CCCHHHCCCccCCCCeeEeccHHHcC-
Confidence 1 4578999999999965689999999999999999999999999999 59999999999999999999988788
Q ss_pred CCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc--c-----cc------cccc--chhH---HHHHhHHH
Q psy224 160 NKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE--M-----GA------SMNG--GNCL---ATFVCTLQ 220 (547)
Q Consensus 160 ~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~--~-----~~------~~~g--g~~~---~~~~g~~~ 220 (547)
+|+||++|++|++|+++|+|+. +|++++|+|||+++.+.+. . +. ...+ .+.+ ..++|.++
T Consensus 232 -~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~ 310 (495)
T 2dpn_A 232 -APVPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRATYALEGSLFVAGAAV 310 (495)
T ss_dssp -SCCBEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHH
T ss_pred -CCCeEEEECcHHHHHHHhCCCCCCCcEEEEccHhhhhhhhcCCccccCCCCceEEEEEEcCCCCEEEEechHHhHHHHH
Confidence 8999999999999999999997 8999999999998865531 1 10 0111 1111 23467889
Q ss_pred HHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHH
Q psy224 221 NWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGII 297 (547)
Q Consensus 221 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia 297 (547)
+|+++ +.....++.+++++.. + +++++++|+|||.|+|+|+|++ |.|+|++..+ +++|++||++||++
T Consensus 311 ~w~~~-~~~~~~~~~l~~~a~~------~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~~~rAvlEgia 381 (495)
T 2dpn_A 311 GWLKE-VGLIRESAEVEALAAS------V-EDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGT-SRAHLARAALEGVA 381 (495)
T ss_dssp HHHHH-TTSSSSTTTHHHHHHT------C-SCCSSCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHHH
T ss_pred HHHHH-cCCccCHHHHHHHHhh------C-CCCCcEEEecCCCCCCCCCCCCCCceEEEecCCCC-CHHHHHHHHHHHHH
Confidence 99999 5433333444444322 2 3578999999999999999975 7999999987 99999999999999
Q ss_pred HHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 298 NNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 298 ~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
|.+|.+++ .+++ .| +++|+++||+ +||+.|+|++||++++||.+....+..+
T Consensus 382 ~~~~~~~~--~l~~~~g~~~~~i~~~GG~-a~n~~~~q~~Adv~g~pV~~~~~~e~~a 436 (495)
T 2dpn_A 382 FQVRDVVL--AMEEEAGVRLKVLKADGGM-AQNRLFLKIQADLLGVPVAVPEVTETTA 436 (495)
T ss_dssp HHHHHHHH--HHHTTTSCCCCCEEEESGG-GGCHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred HHHHHHHH--HHHHhcCCCCcEEEEeccc-ccCHHHHHHHHHHhCCeeEecCCcccHH
Confidence 99999999 4655 45 6799999998 9999999999999999999887766444
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=448.71 Aligned_cols=326 Identities=18% Similarity=0.261 Sum_probs=266.6
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
|+++||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 3 m~~~lgIDiGtT~~k~~l~d~~g~i-~~~~~~~~~~~~-----~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~~~i 76 (503)
T 2w40_A 3 MNVILSIDQSTQSTKVFFYDEELNI-VHSNNLNHEQKC-----LKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVII 76 (503)
T ss_dssp CEEEEEEEECSSEEEEEEEETTCCE-EEEEEEECCCBC-----CSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCEE
T ss_pred ccEEEEEEeCCcceEEEEECCCCCE-EEEEEEeeeeec-----CCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCCccce
Confidence 5789999999999999999999998 999998886544 57899999999999855433
Q ss_pred --------------------------HhhCCchhhhhhceecc----------C--------------------------
Q psy224 66 --------------------------ILRLPKDHLKQVKHIES----------T-------------------------- 83 (547)
Q Consensus 66 --------------------------i~~~d~r~~~~~~~i~~----------~-------------------------- 83 (547)
|.|.|.|+.++++.+.. +
T Consensus 77 ~~Igis~~~~~~~~~D~~~G~~l~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~ 156 (503)
T 2w40_A 77 KCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQK 156 (503)
T ss_dssp EEEEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHHSCHHHHHHHHSSCCCSSSHHHHHHHHHHHCHHHHHH
T ss_pred EEEEEcCCcceEEEEECCCCcCCccceeecccCcHHHHHHHHhccchHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHH
Confidence 24566676544433211 0
Q ss_pred --C----CcchhhHHHHHHhCCCC-CccccccccccccccccCCCccHHHHHhcCCCCC-CCCCCCcccCCccceeeccc
Q psy224 84 --N----DLSFQDFIVAMLCDLQE-PVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFP-LHLLPKIQPSGTIVGTLTRD 155 (547)
Q Consensus 84 --~----~l~~~d~l~~~LtG~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~-~~~Lp~i~~~~~~~G~v~~~ 155 (547)
. +++++|||.|+||| . +++|+|+||+|+|||+++++||+++|+.+ +|+ +++||+++++++++|+++++
T Consensus 157 ~~~~~~~~~~~~d~l~~~LTG--~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~~lP~i~~~~~~~G~~~~~ 232 (503)
T 2w40_A 157 IDDGTAVIGNINTWLIFNLTK--GNCYTDVTNASRTLLMDINTLQWDEKMCKIF--NITNMSVLPEIKSNCSNFGLVKSE 232 (503)
T ss_dssp HHTTCEEEEEHHHHHHHHHHT--SCCEEEHHHHTTTTCBCTTTCSBCHHHHHHT--TCCCGGGSCEEECSEEEEEECCCT
T ss_pred HhcCCeEEECHHHHHHHHHcC--CCccccHHHhhhhcCccCCCCccCHHHHHHc--CCChHHHCCCccCCcCceeeccHH
Confidence 1 45789999999999 5 99999999999999999999999999999 599 99999999999999999988
Q ss_pred ccCCCC--CCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc--c-----c------ccccc----chhH---
Q psy224 156 WLGINK--DTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE--M-----G------ASMNG----GNCL--- 212 (547)
Q Consensus 156 ~~Gl~~--g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~--~-----~------~~~~g----g~~~--- 212 (547)
.+| + |+||++|++|++|+++|+|+. +|++++|+|||+++.++++ . + ...++ .+.+
T Consensus 233 ~~g--~~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~ 310 (503)
T 2w40_A 233 HVP--DYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGS 310 (503)
T ss_dssp TSG--GGTTCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCSTTSCCEEEEEEE
T ss_pred HcC--CCCCceEEEECchHHHHHHhCCCCCCCcEEEEechhheeeeecCCccccCCCCceeEEEeecCCCCCceEEEech
Confidence 788 6 999999999999999999997 8999999999999876531 1 1 01122 1111
Q ss_pred HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHH
Q psy224 213 ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLF 289 (547)
Q Consensus 213 ~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ 289 (547)
..++|.+++|+++ +.....++.+++++.. + ++++|++|+|||.|+|.|+|++ |.|+|++..| +++|++
T Consensus 311 ~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~------~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~ 381 (503)
T 2w40_A 311 IGTAGSGVSWLLK-NKLIDDPSEASDIMEK------C-ENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNT-ERSHIV 381 (503)
T ss_dssp ESCSHHHHHHHHH-TTSSSCGGGHHHHHHH------C-CSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHH
T ss_pred hhhhHhHHHHHHH-hCCcCCHHHHHHHHhh------C-CCCCCEEEecCCCCCCCCCCCCCCcEEEECCCCCC-CHHHHH
Confidence 2446788999999 6433334444444332 2 3688999999999999999975 7999999997 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh-cC--C-cEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 290 VALCEGIINNIHDIMNRSVLHR-SG--I-NRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~-~g--~-~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
||++||++|.+|++++ .+++ .| + ++|+++||+ +||+.|+|++||++++||.+....+..+
T Consensus 382 rAvlEgia~~~~~~~~--~l~~~~g~~~~~~i~~~GG~-a~s~~~~Q~~Adv~g~pV~~~~~~e~~a 445 (503)
T 2w40_A 382 RALLEGIAFQLNEIVD--SLTSDMGIEMLHVLRCDGGM-TKNKPFMQFNSDIINTKIEVSKYKEVTS 445 (503)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHTCSCCSCEEEESGG-GGCHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHhcCCCccceEEEeCcc-ccCHHHHHHHHHHHCCeEEecCCCcchH
Confidence 9999999999999999 4655 45 6 889999998 9999999999999999999887666443
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-53 Score=457.84 Aligned_cols=332 Identities=14% Similarity=0.138 Sum_probs=263.0
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCc------CCCCCCccccCHH-HHHHHH-------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSA------HDSNPGAHEQNVR-KIVSTL------------- 62 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~------~~~~~g~~e~d~~-~~~~~~------------- 62 (547)
|+|+||||+||||+|++|+|.+|++ +++++.+|+..+|.. ....+|+.||||+ .||+++
T Consensus 9 ~~~~lgID~GTts~Ka~l~d~~G~v-v~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~~~l~~~~~~ 87 (538)
T 4bc3_A 9 RRCCLGWDFSTQQVKVVAVDAELNV-FYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFD 87 (538)
T ss_dssp CCEEEEEEECSSEEEEEEEETTCCE-EEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEEEcCcCEEEEEECCCCCE-EEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 6799999999999999999999998 999999987655421 1112344678997 466522
Q ss_pred ----------------------------------------------HHHHhhCCchhhhhhceeccC-------------
Q psy224 63 ----------------------------------------------HNCILRLPKDHLKQVKHIEST------------- 83 (547)
Q Consensus 63 ----------------------------------------------~~~i~~~d~r~~~~~~~i~~~------------- 83 (547)
+++|.|+|+|+.++++.+...
T Consensus 88 ~~~I~aIgis~q~~~~v~~D~~g~~~l~~l~~~~~l~~~~~~~~pl~~ai~W~D~R~~~~~~~l~~~~~~~~~~~~~tG~ 167 (538)
T 4bc3_A 88 FSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGS 167 (538)
T ss_dssp GGGEEEEEEEECSSCEEEEETTHHHHHHTCCTTSCHHHHHTTCBSCSEEECTTCCCCHHHHHHHHHHHTSHHHHHHHHSS
T ss_pred hHHeEEEEecccceeEEEECCCccccccccccccchhhhccccccccCCcccccCcHHHHHHHHHHhhCcHHHHHHHHCC
Confidence 234678999987665544210
Q ss_pred --------------------------CCcchhhHHHHHHhCCCCCc-cccccccccccccccCCCccHHHHHhcCCCCC-
Q psy224 84 --------------------------NDLSFQDFIVAMLCDLQEPV-MSNQNAASWGYFNCKLSTWNEQILRNHEPSFP- 135 (547)
Q Consensus 84 --------------------------~~l~~~d~l~~~LtG~~~~~-~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~- 135 (547)
.+++++|||.|+||| +.. +|+|+||+|+|||+++++||+++|+.+ +++
T Consensus 168 ~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~d~l~~~LTG--~~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~ 243 (538)
T 4bc3_A 168 RAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLG--SYSPIDYSDGSGMNLLQIQDKVWSQACLGAC--APHL 243 (538)
T ss_dssp CCCTTSHHHHHHHHHHHCHHHHHTEEEEEEHHHHHHHHHHT--SCCCCBHHHHTTSSCEETTTTEECHHHHHHH--CTTH
T ss_pred CCccccHHHHHHHHHHcCHHHHHHhheEEcHHHHHHHHHhC--CCcccccchhhcccccccccCCCCHHHHHHh--CccH
Confidence 157899999999999 887 999999999999999999999999999 487
Q ss_pred CCCCCCcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhcccccCCCcEEEeccchhhhhhcc------ccc--
Q psy224 136 LHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDE------MGA-- 204 (547)
Q Consensus 136 ~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~------~~~-- 204 (547)
+++||+++++++++|+|++++ +||++||||++|+||++|+++|++..+|++++|+|||+++.++++ .+.
T Consensus 244 ~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~ 323 (538)
T 4bc3_A 244 EEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQEPMPALEGHIF 323 (538)
T ss_dssp HHHHCCCBCSSCEEEECCHHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCTTCEEEEESSSEEEEEEESSCCCCSSSEEE
T ss_pred HHHCCCcccccccccccCHHHHHHhCCCCCCeEEEecccHHhhhhccccCCCcEEEEeccchheEEecCCCCCCCCcceE
Confidence 789999999999999999987 999999999999999999999996448999999999999876532 110
Q ss_pred --ccccchhH----HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCceEE--
Q psy224 205 --SMNGGNCL----ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASVT-- 276 (547)
Q Consensus 205 --~~~gg~~~----~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~-- 276 (547)
..+++.++ ..++|.+++|+++.+.. ..++.+++++. +++++++|++|+|||.|+|.|+ .+|.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~gg~~~~w~~~~~~~-~~~~~l~~~a~------~~~~g~~gl~~lp~~~Ger~P~-~~G~~~~~ 395 (538)
T 4bc3_A 324 CNPVDSQHYMALLCFKNGSLMREKIRNESVS-RSWSDFSKALQ------STEMGNGGNLGFYFDVMEITPE-IIGRHRFN 395 (538)
T ss_dssp EETTEEEEEEEEEEESSSHHHHHHHHHHHST-TCHHHHHHHHH------TSCTTGGGCEEEEESSCCSSSC-CCEEEEEC
T ss_pred EeecCCCCEEEeehhhccchHHHHHHHHhcC-CCHHHHHHHHh------cCCCCCCCeEEeecCCCCcCCC-CCceeeec
Confidence 01122111 13456778999997542 33445555433 4567889999999999999997 346664
Q ss_pred ----ecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 277 ----HITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 277 ----gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
|++. + +++|++||++||++|.+|.+++. +++.+ +++|+++||| +||++|+|++||++|+||.++...+.
T Consensus 396 ~~~~g~~~-~-~~~~l~RAvlEgia~~~r~~~~~--l~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~e~ 470 (538)
T 4bc3_A 396 TENHKVAA-F-PGDVEVRALIEGQFMAKRIHAEG--LGYRVMSKTKILATGGA-SHNREILQVLADVFDAPVYVIDTANS 470 (538)
T ss_dssp TTSCEESC-C-CHHHHHHHHHHHHHHHHHHHHHH--TTCCCCTTCCEEEEEGG-GGCHHHHHHHHHHHTSCEEECCCTTH
T ss_pred cccccccC-C-CHHHHHHHHHHHHHHHHHHHHHH--hhhcCCCCCeEEEEcch-hcCHHHHHHHHHHhCCceEecCCCCc
Confidence 3443 4 89999999999999999999994 66554 6899999998 99999999999999999999877664
Q ss_pred hh
Q psy224 351 RD 352 (547)
Q Consensus 351 ~~ 352 (547)
.+
T Consensus 471 ~a 472 (538)
T 4bc3_A 471 AC 472 (538)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-53 Score=457.06 Aligned_cols=333 Identities=15% Similarity=0.240 Sum_probs=262.9
Q ss_pred CC-CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHH------------------
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVST------------------ 61 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~------------------ 61 (547)
|+ |+|+||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||++
T Consensus 1 m~~~~~~lgIDiGtts~ka~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~ 74 (554)
T 3l0q_A 1 MSLASYFIGVDVGTGSARAGVFDLQGRM-VGQASREITMFK-----PKADFVEQSSENIWQAVCNAVRDAVNQADINPIQ 74 (554)
T ss_dssp ---CCEEEEEEECSSEEEEEEEETTSCE-EEEEEEECCCEE-----EETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCCCcEEEEEEECcccEEEEEECCCCCE-EEEEEEeccccc-----CCCCccccCHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 64 7899999999999999999999998 999998886544 4789999999999983
Q ss_pred ---------------------H---------HHHHhhCCchhhhhhceeccC----------------------------
Q psy224 62 ---------------------L---------HNCILRLPKDHLKQVKHIEST---------------------------- 83 (547)
Q Consensus 62 ---------------------~---------~~~i~~~d~r~~~~~~~i~~~---------------------------- 83 (547)
+ +++|.|+|+|+.++++.+...
T Consensus 75 I~~Igis~~~~~v~~D~~G~pl~~~~~~~~~~~ai~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~ 154 (554)
T 3l0q_A 75 VKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHRAITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHM 154 (554)
T ss_dssp EEEEEEEECSCEEEEETTSCBCCCSTTCCTTCCEECTTCCTTHHHHHHHHHHTCGGGGGBTTCCCTTSHHHHHHHHHHHC
T ss_pred EEEEEEcCCCceEEECCCCCEeeccCCCCCCCCcEEecccchHHHHHHHHHhHHHHHHHhCCCCChhhHHHHHHHHHHhC
Confidence 3 355678999987766554310
Q ss_pred --------CCcchhhHHHHHHhCCCCCcccccccccccc--ccccCCCccHHHHHhcCCCCCCC------CCC-CcccCC
Q psy224 84 --------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGY--FNCKLSTWNEQILRNHEPSFPLH------LLP-KIQPSG 146 (547)
Q Consensus 84 --------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl--~d~~~~~W~~~ll~~~g~~i~~~------~Lp-~i~~~~ 146 (547)
.+++++|||.|+||| +. ++|+||.+++ ||+++++||+++|+.+ +|++. +|| ++++++
T Consensus 155 Pe~~~~~~~~~~~~dyl~~~LTG--~~--~~s~as~t~~~~~d~~~~~W~~~ll~~~--gi~~~~~~~~~~Lp~~i~~~~ 228 (554)
T 3l0q_A 155 PNTWSNVGHLFDLPDFLTWRATK--DE--TRSLCSTVCKWTYLGHEDRWDPSYFKLV--GLADLLDNNAAKIGATVKPMG 228 (554)
T ss_dssp HHHHHHEEEEEEHHHHHHHHHHS--CC--CEEHHHHHHHSCCBTTTTBCCHHHHHHH--TCGGGGHHHHTTTCSCEECTT
T ss_pred hHHHHHhceEEcHHHHHHHHHhC--Cc--cccccchhhccccccccCCCCHHHHHHc--CCccccchhHHhCCCcccCCc
Confidence 157899999999999 66 3677777764 7889999999999999 48752 899 699999
Q ss_pred ccce-eecccc---cCCCCCCeEEecCCchhhhhhcc-ccc--CC-------CcEEEeccchhhhhhccc-----cc---
Q psy224 147 TIVG-TLTRDW---LGINKDTPINVALGDLQCSVLAT-LQY--HS-------DAIVNISTSAQIAFIDEM-----GA--- 204 (547)
Q Consensus 147 ~~~G-~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~-g~~--~~-------~~~is~GTs~~~~~~~~~-----~~--- 204 (547)
+++| +|++++ +||++|+||++|++|++|+++|+ |+. +| ++.+|+|||+++.++++. +.
T Consensus 229 ~~~G~~lt~~~A~~~GL~~g~pV~~g~gD~~aa~lg~~G~~~~~G~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~ 308 (554)
T 3l0q_A 229 APLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIALIGGTSTAHMAMSRSAHFISGIWGP 308 (554)
T ss_dssp CBCTTSSCHHHHHHHTCCTTCEEBCCEEHHHHHHHHHTTCCCTTSCCCCTTTEEEEECSSSEEEEEEESSCCCCTTSEEE
T ss_pred CeeCcccCHHHHHHhCCCCCCeEEEeChHHHhHHhhccccccCCCccccccceEEEEecchheeeeecCCccccCCccee
Confidence 9999 899886 99999999999999999999996 664 66 688999999988765321 10
Q ss_pred ----ccccchhH---HHHHhHHHHHHHHhCCCCchh---------HHHHHHHhccCccccccc-------CCCCeEEecC
Q psy224 205 ----SMNGGNCL---ATFVCTLQNWFKEFGFNVPQN---------QIWAKLINASDPINHITR-------HHSTLRVTPT 261 (547)
Q Consensus 205 ----~~~gg~~~---~~~~g~~~~w~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------~~~~~~~~P~ 261 (547)
..++.+.+ ..++|.+++|+++.+....+. ..++.+.+. ++++++ ++++++|+||
T Consensus 309 ~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~gl~flP~ 385 (554)
T 3l0q_A 309 YYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYI---LRQMAGEPENIAFLTNDIHMLPY 385 (554)
T ss_dssp EETSSSTTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHH---HHHHHSSGGGGGGGGTTCCEECC
T ss_pred ecccccCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHH---HHhcCCCCCccccccCceEEccc
Confidence 01221111 245778899999985321100 112222111 122233 3799999999
Q ss_pred ccCcccCCCCC---ceEEecccCCCCHHHH---HHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHH
Q psy224 262 LLGDRHVIAES---ASVTHITIQNLGVTKL---FVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHY 333 (547)
Q Consensus 262 ~~G~r~p~~~~---~~~~gl~~~~~~~~~l---~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~ 333 (547)
|.|+|+|+|++ |.|+|++..| +++|| +||++||++|++|++++ .+++.| +++|+++||+ +||++|+|+
T Consensus 386 ~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~r~~rAvlEgia~~~r~~~e--~l~~~g~~~~~i~~~GG~-aks~~~~Qi 461 (554)
T 3l0q_A 386 FHGNRSPRANPNLTGIITGLKLST-TPEDMALRYLATIQALALGTRHIIE--TMNQNGYNIDTMMASGGG-TKNPIFVQE 461 (554)
T ss_dssp TTCBCSSSCBTTCCCEECSCCSCC-SHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTCCCCEEEEESGG-GGCHHHHHH
T ss_pred ccCCCCCCCCCCCcEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCCCEEEEeCcc-ccCHHHHHH
Confidence 99999999985 8999999997 99999 89999999999999999 477766 7899999998 999999999
Q ss_pred HHHHhCCceEEecchhhhh
Q psy224 334 IERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 334 ~Ad~l~~~v~~~~~~~~~~ 352 (547)
+||++|+||.++...+..+
T Consensus 462 ~ADv~g~pV~~~~~~e~~a 480 (554)
T 3l0q_A 462 HANATGCAMLLPEESEAML 480 (554)
T ss_dssp HHHHHCCEEEEESCSCHHH
T ss_pred HHHhhCCeEEecCCCcchH
Confidence 9999999999987666543
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-52 Score=444.42 Aligned_cols=327 Identities=17% Similarity=0.206 Sum_probs=267.5
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH------------------
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC------------------ 65 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~------------------ 65 (547)
+|+||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 2 ~~~lgiDiGtts~k~~l~d~~G~i-~~~~~~~~~~~~-----p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~I 75 (504)
T 2d4w_A 2 DYVLAIDQGTTSSRAIVFDHSGEI-YSTGQLEHDQIF-----PRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAV 75 (504)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CEEEEEecCCcceEEEEECCCCCE-EEEEEEecceec-----CCCCceeECHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 489999999999999999999998 999998887544 57899999999999865443
Q ss_pred -----------------------HhhCCchhhhhhceecc----C----------------------------------C
Q psy224 66 -----------------------ILRLPKDHLKQVKHIES----T----------------------------------N 84 (547)
Q Consensus 66 -----------------------i~~~d~r~~~~~~~i~~----~----------------------------------~ 84 (547)
|.|.|.|+.++++.+.. . .
T Consensus 76 gis~~g~~~v~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 155 (504)
T 2d4w_A 76 GITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGGDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEK 155 (504)
T ss_dssp EEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHCSSCGGGGHHHHSCCSCTTSHHHHHHHHHHHSTTHHHHHHH
T ss_pred EEeCCCCeEEEEECCCCCCccccceecccChHHHHHHHHhhcchHHHHHHhCCCCCchhHHHHHHHHHHcChhHHHHHhc
Confidence 45778887665554431 0 1
Q ss_pred ----CcchhhHHHHHHhCCCC---CccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecc-cc
Q psy224 85 ----DLSFQDFIVAMLCDLQE---PVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTR-DW 156 (547)
Q Consensus 85 ----~l~~~d~l~~~LtG~~~---~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~-~~ 156 (547)
+++++|||.|+|||..+ +++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++ +.
T Consensus 156 ~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~~~~~G~~~~~~~ 233 (504)
T 2d4w_A 156 GDLLFGNTDTWVLWNMTGGTEGGVHVTDVTNASRTMLMDLDTLSWREDIAADM--GIPLSMLPDIRSSSEVYGHGRPRGL 233 (504)
T ss_dssp TCEEEECHHHHHHHHHTTTTTTCCCEEEHHHHTTTTCEETTTTEECHHHHHHT--TCCGGGSCEEECSEEEEEECCTTSS
T ss_pred CCeEEecHHHHHHHHhcCCCcCCceeeehhhhhhhcCccCCCCccCHHHHHHh--CCCHHHCCCccCCccceeccchHHh
Confidence 45789999999999545 89999999999999999999999999999 5999999999999999999998 55
Q ss_pred cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc--c-----cc------cccc---chhH---HHHH
Q psy224 157 LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE--M-----GA------SMNG---GNCL---ATFV 216 (547)
Q Consensus 157 ~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~--~-----~~------~~~g---g~~~---~~~~ 216 (547)
+| + +||++|++|++|+++|+|+. +|++++|+|||+++.+++. . +. ...+ .+.+ ..++
T Consensus 234 ~G--~-~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 310 (504)
T 2d4w_A 234 VP--G-VPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIGDAPAVYALEGSIAVT 310 (504)
T ss_dssp ST--T-CEEEEEEEHHHHHHHHTTCCSTTEEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCTTSCCEEEEEEEESCS
T ss_pred CC--C-CeEEEECCcHHHHHhhCCCCCCCcEEEEcchhheeeeecCCccccCCCCcEEEEEEEcCCCCceEEEcchhhhH
Confidence 88 6 99999999999999999997 8999999999999876531 1 10 1112 1111 2446
Q ss_pred hHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHH
Q psy224 217 CTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALC 293 (547)
Q Consensus 217 g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~ 293 (547)
|.+++|+++.+.....++.+++++. ++ ++++|++|+|||.|+|+|+|++ |.|+|++..| +++|++||++
T Consensus 311 G~~~~W~~~~~~~~~~~~~l~~~a~------~~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~rAvl 382 (504)
T 2d4w_A 311 GSLVQWLRDNLGMFEDAPDVEWLAG------KV-QDNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYV-NRNHIARAAL 382 (504)
T ss_dssp HHHHHHHHHTTCTTTTCSCTHHHHT------TS-SSCTTCEEECTTCCCSTTTCCCCSCEEEEEECSSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHh------hC-CCCCCEEEecCCCCCCCCCCCCCCCEEEEeCCCCC-CHHHHHHHHH
Confidence 7889999997643222233344432 22 3588999999999999999986 7999999997 9999999999
Q ss_pred HHHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 294 EGIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 294 Egia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
||++|.+|++++. +++ .| +++|+++||+ +||++|+|++||++|+||.++...+..+
T Consensus 383 Egia~~~~~~~~~--l~~~~g~~~~~i~~~GG~-a~s~~~~Qi~Adv~g~pV~~~~~~e~~a 441 (504)
T 2d4w_A 383 EATAFQSREVVDA--MNADSGVDLTELRVDGGM-VANELLMQFQADQLGVDVVRPKVAETTA 441 (504)
T ss_dssp HHHHHHHHHHHHH--HHHHHSCCCCEEEEESGG-GGCHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred HHHHHHHHHHHHH--HHHhcCCCcceEEEeCCc-ccCHHHHHHHHHHhCCeEEeCCCCcchH
Confidence 9999999999994 654 45 6899999998 9999999999999999999987766444
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-51 Score=434.03 Aligned_cols=324 Identities=12% Similarity=0.079 Sum_probs=255.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
|+|+||||+||||+|++|+|.+|++ ++..+.+++. . +.+|+.||||++||+.+..+
T Consensus 5 m~~~lgIDiGTts~Ka~l~d~~G~i-~~~~~~~~~~-~-----~~~g~~eqdp~~~~~~~~~~i~~~~~~~I~aIgis~~ 77 (482)
T 3h6e_A 5 TGATIVIDLGKTLSKVSLWDLDGRM-LDRQVRPSIP-L-----EIDGIRRLDAPDTGRWLLDVLSRYADHPVTTIVPVGH 77 (482)
T ss_dssp ---CEEEEECSSEEEEEEECTTSCE-EEEEEEECCC-E-----ESSSCEECCHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred hceEEEEEcCCCCeEEEEEECCCcE-EEEEEecCCc-c-----cCCCceeECHHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 6799999999999999999999998 9999988864 2 47899999999999976544
Q ss_pred ----------------HhhCCchhhhhhceecc-----------------C-------------------CCcchhhHHH
Q psy224 66 ----------------ILRLPKDHLKQVKHIES-----------------T-------------------NDLSFQDFIV 93 (547)
Q Consensus 66 ----------------i~~~d~r~~~~~~~i~~-----------------~-------------------~~l~~~d~l~ 93 (547)
|.|.|+|+.+.++.+.. . .+++++|||.
T Consensus 78 ~~~~v~~D~G~pl~~ai~w~D~R~~~~~~~l~~~~~~~~~tG~~~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~l~~~dyl~ 157 (482)
T 3h6e_A 78 GAGIAALTDGRLAFPPLDYEQSIPEAVMADYRSQRDPFARTGSPALPDGLNIGSQLWWLDQLHPDVMANATLLPWAQYWA 157 (482)
T ss_dssp SSCEEEEETTEECSCCBCTTSCCCHHHHHHHHTTCCCHHHHCCCCCSTTSSHHHHHHHHHHHSHHHHHSCEEEEHHHHHH
T ss_pred cCCEEEECCCCEeccccccCCcccHHHHHHHHhhChHHHHhCCCCCCCchhHHHHHHHHHHcCchhhhcCEEEccHHHHH
Confidence 45778887654443211 0 1578899999
Q ss_pred HHHhCCCCCcccccc-ccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeEEecC
Q psy224 94 AMLCDLQEPVMSNQN-AASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVAL 169 (547)
Q Consensus 94 ~~LtG~~~~~~d~s~-As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~ 169 (547)
|+||| ++++|+|+ ||+|+|||+++++|+ ++|+.+ +|+ ++||+++++++++|++++++ +||++|+||++|+
T Consensus 158 ~~LTG--~~~td~s~~As~t~l~d~~~~~W~-~ll~~~--gi~-~~LP~v~~~~~~~G~l~~~~A~~~GL~~g~pV~~g~ 231 (482)
T 3h6e_A 158 WFLTG--RAVSEVTSLGCHSDLWDPQDGDFS-PMAKRL--GWA-ARFAPIVRAGDTVGALLPAIAERTGLSPDVQVLAGL 231 (482)
T ss_dssp HHTTS--CCCEEHHHHTTTCSSEETTTTEEC-HHHHHT--TCG-GGBCCEECTTSEEEECCHHHHHHHTCCTTCEEECCE
T ss_pred HHHhC--CeeeecchhhhccCCccCCcCcHH-HHHHHc--CCH-HhCCCCcCCCceeeeeCHHHHHHhCCCCCCEEEEeC
Confidence 99999 99999998 899999999999999 599999 587 89999999999999999987 9999999999999
Q ss_pred Cchhhhhhc---cccc-CCC-cEEEeccchhhhhhcc---c-c-c-----cc----ccchhH---HHHHhHHHHHHHHhC
Q psy224 170 GDLQCSVLA---TLQY-HSD-AIVNISTSAQIAFIDE---M-G-A-----SM----NGGNCL---ATFVCTLQNWFKEFG 227 (547)
Q Consensus 170 ~D~~aa~~g---~g~~-~~~-~~is~GTs~~~~~~~~---~-~-~-----~~----~gg~~~---~~~~g~~~~w~~~~~ 227 (547)
||++|+++| +|+. +|+ +++|+|||.++....+ . . . .. +.++.+ ..++|.+++|+++..
T Consensus 232 ~D~~aa~lG~~g~g~~~~g~~~~~s~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~w~~~~~ 311 (482)
T 3h6e_A 232 HDSNAALLAARGFAEIADNEATVLSTGTWFIAMRLPATPVDTATLPEARDCLVNVDVHGRPVPSARFMGGREIETLIEID 311 (482)
T ss_dssp EHHHHHHHHHTTSTTTTTSSEEEEECSSSEEEEEECSSCCCGGGCCGGGTEEEEECTTSCEEEEEEECHHHHHHHHHCSG
T ss_pred cHHHHHHhhhhccCCcCCCCEEEEECCceeEEEEecCccCCccccchhhceeeccccccccccchhhhhHHHHHHHHHhc
Confidence 999999999 9987 776 6899999987643222 1 0 0 00 011111 135778899997642
Q ss_pred CCCch--hHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC-ceEEecccCCCCHHHHHHHHHHH--HHHHHHH
Q psy224 228 FNVPQ--NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES-ASVTHITIQNLGVTKLFVALCEG--IINNIHD 302 (547)
Q Consensus 228 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~-~~~~gl~~~~~~~~~l~ra~~Eg--ia~~~~~ 302 (547)
....+ .+..+.+. ...+++++|++|+|||.|+|+|+|++ |+|+||+. .|++||++|+ ++|.+|+
T Consensus 312 ~~~~~~~~~~~~~~a------~~~~~g~~Gl~flP~l~Ger~P~~d~rG~~~Gl~~-----~~l~RA~lE~~Gia~~~r~ 380 (482)
T 3h6e_A 312 TRRVDIKPDQPALLA------AVPEVLRHGRMILPTLMRGFGPYPHGRFAWINRPE-----DWFERRAAACLYAALVADT 380 (482)
T ss_dssp GGCTTCGGGHHHHHH------THHHHHHTTCEEESCSSTTCSSCTTCCCEEESCCS-----SHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHH------hccccCCCCeEEecCCCCCCCCCCCCceEEeCCCH-----HHHHHHHHHHHhHHHHHHH
Confidence 11100 11222211 12346789999999999999999985 99999986 6999999995 9999999
Q ss_pred hhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHH-hCCceEEecchhhhhhhh
Q psy224 303 IMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERI-YGLQLIVEQDQAMRDASY 355 (547)
Q Consensus 303 ~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~-l~~~v~~~~~~~~~~a~~ 355 (547)
+++ .+++. ++|+++||+ +||++|+|++||+ +|+||.+++..+..+.++
T Consensus 381 ~l~--~~~~~--~~i~~~GG~-a~s~~w~Qi~ADv~~g~pV~~~~~~e~~alGA 429 (482)
T 3h6e_A 381 ALD--LIGST--GRILVEGRF-AEADVFVRALASLRPDCAVYTANAHNDVSFGA 429 (482)
T ss_dssp HHH--HTTCC--SEEEEESGG-GGCHHHHHHHHHHSTTSEEEEESSCCCTTGGG
T ss_pred HHH--HhcCC--CeEEEeCCc-ccCHHHHHHHhhhcCCCeEEEcCCCchHHHHH
Confidence 999 46554 799999998 9999999999999 999999998776555443
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=401.99 Aligned_cols=321 Identities=15% Similarity=0.203 Sum_probs=239.9
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH---------------
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC--------------- 65 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~--------------- 65 (547)
|+|+++||||+|||++|++|+|.+|++ ++..+.++....|. ..+.+|+.+||+++||+++..+
T Consensus 1 m~~~~~lgiDiGtts~k~~l~d~~g~~-~~~~~~~~~~~~~~-~~~~~g~~e~d~~~~~~~i~~~~~~~~~~~~~i~~Ig 78 (489)
T 2uyt_A 1 MTFRNCVAVDLGASSGRVMLARYEREC-RSLTLREIHRFNNG-LHSQNGYVTWDVDSLESAIRLGLNKVCAAGIAIDSIG 78 (489)
T ss_dssp -CCEEEEEEEECSSEEEEEEEEEEGGG-TEEEEEEEEEEECC-CEEETTEEECCHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCcceEEEEEecCCCceEEEEEecCcc-ceEEEEEEeecCCC-ccccCCeEEECHHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 889999999999999999999999987 76665554322111 2246889999999999866544
Q ss_pred ---------------------HhhCCchhhhhhceeccC--------------------------------------CCc
Q psy224 66 ---------------------ILRLPKDHLKQVKHIEST--------------------------------------NDL 86 (547)
Q Consensus 66 ---------------------i~~~d~r~~~~~~~i~~~--------------------------------------~~l 86 (547)
|.|.|.|+.++++.+... .++
T Consensus 79 is~q~~~~v~~D~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l 158 (489)
T 2uyt_A 79 IDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHAL 158 (489)
T ss_dssp EEECSSCEEEECTTSCEESCCBCTTCGGGTTHHHHHHHHHCHHHHHHHHCCCCCTTSHHHHHHHHHHHCGGGGGGCCEEE
T ss_pred EecCcccEEEECCCCCCccCCccccCCccHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHhcCchHHHHhhhcc
Confidence 467888887665543210 147
Q ss_pred chhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCCCCCeEE
Q psy224 87 SFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPIN 166 (547)
Q Consensus 87 ~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~~g~~V~ 166 (547)
+++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ ++++++||+++++++++|+++.. .| +|+||+
T Consensus 159 ~~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~~~~~G~~~~~-~~--~g~pV~ 231 (489)
T 2uyt_A 159 LMPDYFSYRLTG--KMNWEYTNATTTQLVNINSDDWDESLLAWS--GANKAWFGRPTHPGNVIGHWICP-QG--NEIPVV 231 (489)
T ss_dssp EHHHHHHHHHHS--CCCCBHHHHGGGTCEETTTTEECHHHHHHH--TCCGGGSCCCBCTTCEEEEEECT-TC--CEEEEE
T ss_pred CcHHHHHHHHhC--CccceehhhhhhcccccCcCccCHHHHHHc--CCCHHHCCCccCCCcceeeeecc-cC--CCCcEE
Confidence 899999999999 899999999999999999999999999999 59999999999999999998743 23 789999
Q ss_pred e-cCCchhhhhhccccc-CCCcEEEeccchhhhhhccc---------c-cccc----cchhH-HHHHhHHHHHHHHhCCC
Q psy224 167 V-ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDEM---------G-ASMN----GGNCL-ATFVCTLQNWFKEFGFN 229 (547)
Q Consensus 167 ~-g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~~---------~-~~~~----gg~~~-~~~~g~~~~w~~~~~~~ 229 (547)
+ |+||++|+++|+|+. ++++++|+|||+++.+.++. + ..+. +.+.+ ....| .|+++.++.
T Consensus 232 ~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~W~~~~~~~ 308 (489)
T 2uyt_A 232 AVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMG---LWLLQRVLQ 308 (489)
T ss_dssp CCCCBHHHHHHHHSCCCSTTEEEEEESSSEEEEEEESSCCCSHHHHHHTCEEECCGGGCEEEEEEECT---THHHHHHHH
T ss_pred EECchHHHHHHhcCCCCCCCcEEEEEchHhhcccccCCCccCHHHHhhcceeecCCCCeEEEehhHhH---HHHHHHhhc
Confidence 7 889999999999987 79999999999988654320 1 1111 11100 00012 587775321
Q ss_pred CchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC--------ceEEec--ccCCCCHHHHHHHHHHHHHHH
Q psy224 230 VPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES--------ASVTHI--TIQNLGVTKLFVALCEGIINN 299 (547)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~--------~~~~gl--~~~~~~~~~l~ra~~Egia~~ 299 (547)
..+.+.++++.+. +..+++++ .+|+| ++.|++++ +.+.|+ +..| +++||+||++||++|.
T Consensus 309 ~~~~~~~~~l~~~----a~~~~~~~-~l~~p----~~~~~~~p~~~~~~~~g~~~g~~~~~~~-t~~~l~RAvlEgia~~ 378 (489)
T 2uyt_A 309 ERQINDLPALIAA----TQALPACR-FIINP----NDDRFINPDEMCSEIQAACREMAQPIPE-SDAELARCIFDSLALL 378 (489)
T ss_dssp HTTCCCHHHHHHH----HTTSCSSS-SCCCT----TSGGGSSCSCHHHHHHHHHHHTTCCCCC-SHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHH----hccCCCcC-eeECC----CCCccCChhhhHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHH
Confidence 1111223333221 12345655 45788 34444432 456666 4565 9999999999999999
Q ss_pred HHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 300 IHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 300 ~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
+|++++ .+++ .| +++|+++||| +||++|+|++||++|+||.+..
T Consensus 379 ~r~~~~--~l~~~~g~~~~~i~~~GGg-aks~~~~Qi~ADvlg~pV~~~~ 425 (489)
T 2uyt_A 379 YADVLH--ELAQLRGEDFSQLHIVGGG-CQNTLLNQLCADACGIRVIAGP 425 (489)
T ss_dssp HHHHHH--HHHHHHTCCCSEEEEESGG-GGCHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHH--HHHHHhCCCCCEEEEeCCh-hhhHHHHHHHHHHHCCeeecCC
Confidence 999999 4666 44 7899999998 9999999999999999998765
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=314.18 Aligned_cols=192 Identities=56% Similarity=0.972 Sum_probs=182.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++.+.+|++++++|+||+||++||+|||+.|||+|+.|++.|++.+++|++.|++|++||+|+.+.+.+|
T Consensus 24 ~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw 103 (216)
T 3sbc_A 24 QVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAW 103 (216)
T ss_dssp CTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred hcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHHHH
Confidence 39999999999865677778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+..+......+++||+++|+++++++.||+..++.+.+.|++||||++|+|++..+++.+.+|+++|+|+.|++||.++
T Consensus 104 ~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~AlQ~~~ 183 (216)
T 3sbc_A 104 TNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTD 183 (216)
T ss_dssp HTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHhhhHh
Confidence 99876666666799999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccCC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
++++.||++|++|+++|++.+++.+++|..+|
T Consensus 184 ~~~~~~Pa~W~~G~~~i~p~~~~~~~~~~~~~ 215 (216)
T 3sbc_A 184 KNGTVLPCNWTPGAATIKPTVEDSKEYFEAAN 215 (216)
T ss_dssp HHCCBBCTTCCTTSCCBCCSTTTHHHHHHHHC
T ss_pred hcCCCcCCCCCCCCceecCCHHHHHHHHHHcc
Confidence 99999999999999999999999999999887
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=298.36 Aligned_cols=189 Identities=63% Similarity=1.131 Sum_probs=148.8
Q ss_pred ccCCCCCCeeeccc-cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAV-VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~-~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|+++.+ -++++++++|+||+||++||+|||+.|||+|+.|+..|++++++|++.|++|++||+|+...+.+
T Consensus 27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~~ 106 (219)
T 3tue_A 27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQ 106 (219)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHHH
Confidence 49999999995531 13444799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.++........+++||+++|++++++++||+..++.+...|++||||++|+|++.++++...+++++|+|+.|++||.+
T Consensus 107 w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ~~ 186 (219)
T 3tue_A 107 WTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQFV 186 (219)
T ss_dssp HHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhH
Confidence 99876555555589999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred hhcCccccCCccCCCcccccCccchhc-ccc
Q psy224 515 AEHGEVCPAGWKPGSKTMKADPSGSQE-YFK 544 (547)
Q Consensus 515 ~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~ 544 (547)
+++++.||++|++|+++|++.+++.++ ||.
T Consensus 187 ~~~~~~~Pa~W~~G~~~i~p~~~~~~e~y~~ 217 (219)
T 3tue_A 187 EKHGEVCPANWKKGDPGMKPEPNASVEGYFS 217 (219)
T ss_dssp HHC----------------------------
T ss_pred HhcCCCcCCCCCCCCccccCCCccchhhhcc
Confidence 999999999999999999998766544 774
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=294.45 Aligned_cols=192 Identities=65% Similarity=1.177 Sum_probs=150.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+++++++++++++||++||+|||++|||+|+.+++.|++++++|+++|++|++||.|+.+...+|
T Consensus 63 ~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~ 142 (254)
T 3tjj_A 63 KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAW 142 (254)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHH
Confidence 49999999999874466668999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.++++++....+++||+++|.++++++.||+.....+...|++||||++|+|++.+.++.+.+++++++++.|++++...
T Consensus 143 ~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~alq~~~ 222 (254)
T 3tjj_A 143 INTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTD 222 (254)
T ss_dssp HTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhhcccc
Confidence 99876666555799999999999999999998766666789999999999999999988888889999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccCC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
++++.||++|++|+++|++.+++.++||..+|
T Consensus 223 ~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~~ 254 (254)
T 3tjj_A 223 KHGEVAPAGWKPGSETIIPDPAGKLKYFDKLN 254 (254)
T ss_dssp HHC-----------------------------
T ss_pred ccCccccCCCCCCCceeccChhHHHHHhhccC
Confidence 99999999999999999999999999999988
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=282.39 Aligned_cols=191 Identities=66% Similarity=1.194 Sum_probs=174.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+|+++++++++++||++||+||+++|||+|+.+++.|++++++|+++|++|++||.|+++..++|
T Consensus 49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~ 128 (240)
T 3qpm_A 49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAW 128 (240)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 49999999999973477668999999999999999997799999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.++++++....+++||+++|.++++++.||+..+..|...|++||||++|+|++.+.++.+.+++++++++.|++++...
T Consensus 129 ~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~lq~~~ 208 (240)
T 3qpm_A 129 IITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTD 208 (240)
T ss_dssp HHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhh
Confidence 99876665555799999999999999999998766666789999999999999999888888889999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
++++.||++|++|+++|++.+++.++||..|
T Consensus 209 ~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~ 239 (240)
T 3qpm_A 209 KHGEVCPAGWKPGSDTIIPDPSGKLKYFDKM 239 (240)
T ss_dssp HHSCBBCTTCCTTSCCBCSSTTTTHHHHC--
T ss_pred hcCCccCCCCCCCCceecCCHHHHHHHHhhc
Confidence 9999999999999999999999999999876
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=272.51 Aligned_cols=192 Identities=65% Similarity=1.177 Sum_probs=170.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+|+++.+++++++||++||+|||++|||+|+.+++.|++++++|++++++||+||.|+++..++|
T Consensus 20 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~ 99 (211)
T 2pn8_A 20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAW 99 (211)
T ss_dssp CSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred CCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 48999999999983256557999999999999999999999999999999999999999999999999999999989999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.++++++....+++||++.|.++++++.|++.....+...|++||||++|+|++.+.++.+.+++.+++++.|++++...
T Consensus 100 ~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~~ 179 (211)
T 2pn8_A 100 INTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTD 179 (211)
T ss_dssp HTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhcc
Confidence 98764432222678999999999999999997544455689999999999999999888777789999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccCC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
++++.||++|++|+++|++..++.+++|.++|
T Consensus 180 ~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 211 (211)
T 2pn8_A 180 KHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN 211 (211)
T ss_dssp HHCCBBCTTCCTTSCCBCSSTTTHHHHHCC--
T ss_pred cCCcccCCCCCCCCccccCCchhHHHHhhhcC
Confidence 99999999999999999999999999998875
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=267.31 Aligned_cols=192 Identities=62% Similarity=1.094 Sum_probs=144.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+.+++.+++++++||++||+|||++|||+|+.+++.|++++++|++++++|++||.|+.+..++|
T Consensus 28 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~ 107 (220)
T 1zye_A 28 AVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAW 107 (220)
T ss_dssp CTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 48999999999863333347999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+++++.....+++||++.|.++++++.|++.....+...|++||||++|+|++.+.++.+.+++.+++++.|++++..+
T Consensus 108 ~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~~ 187 (220)
T 1zye_A 108 INTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE 187 (220)
T ss_dssp HTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhhc
Confidence 98775554444789999999999999999998655566689999999999999999888888889999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccCC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
++++.||++|++|+++|++..++.+++|+.++
T Consensus 188 ~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~~ 219 (220)
T 1zye_A 188 AHGEVSPANWTPESPTIKPHPTASREYFEKVN 219 (220)
T ss_dssp C-------------------------------
T ss_pred ccCCccCCCCCCCCceecCCHHHHHHHHHhhc
Confidence 99999999999999999999999999998764
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=262.06 Aligned_cols=189 Identities=41% Similarity=0.826 Sum_probs=169.9
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+|+++|+|++++ . +|+++.++++++ +||++||+|||++|||+|+.+++.|++++++|++++++||+||.|+++..
T Consensus 22 ~~G~~aP~f~l~~-~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~ 100 (213)
T 2i81_A 22 YVGKEAPFFKAEA-VFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTH 100 (213)
T ss_dssp CBTSBCCCCEEEE-ECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred cCCCcCCCeEeec-cccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 4899999999999 6 773358999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++|.+++++.....+++||++.|.++++++.|++.. ..+...|++||||++|+|++.+.++.+.+++.+++++.|++++
T Consensus 101 ~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~-~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 101 LAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp HHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccCCCceEEECCchHHHHHhCCcc-ccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 999987655444447899999999999999999985 3344589999999999999999888777789999999999999
Q ss_pred hhhhcCccccCCccCCCcccccCccchhcccccC
Q psy224 513 FVAEHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 513 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
...++++.||++|++|+++|++..+..++||..+
T Consensus 180 ~~~~~~~~cp~~w~~g~~~~~~~~~~~~~~~~~~ 213 (213)
T 2i81_A 180 HHEKYGDVCPANWQKGKVSMKPSEEGVAQYLSTL 213 (213)
T ss_dssp HHHHHCCBCCTTCCTTSCCBCSSTTTHHHHTTC-
T ss_pred hhhhcCCCcCCCCCcCCccccCCchhHHHHhhcC
Confidence 9999999999999999999999998889998753
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=259.91 Aligned_cols=190 Identities=66% Similarity=1.182 Sum_probs=171.3
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
.+|+++|+|++++ . +|+++.+++++++||++||+|||++|||+|+.+++.|++++++|++++++|++||.|+.+.++
T Consensus 7 ~~G~~aP~f~l~~-~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~ 85 (202)
T 1uul_A 7 EDLHPAPDFNETA-LMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHL 85 (202)
T ss_dssp CTTSBCCCCEEEE-ECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred cCCCcCCCcEeee-eecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 4899999999998 5 675569999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.++++......+++||++.|.+.++++.|++.....+...|++||||++|+|++.+.+..+.+++.+++++.|++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~~ 165 (202)
T 1uul_A 86 AWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQF 165 (202)
T ss_dssp HHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhhh
Confidence 99987654443347899999999999999999986555556899999999999999998888878899999999999999
Q ss_pred hhhcCccccCCccCCCcccccCccchhcccccC
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
..++++.||++|++|+++|++..+..+++|.++
T Consensus 166 ~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 198 (202)
T 1uul_A 166 VEKHGEVCPANWKPGDKTMKPDPEKSKEYFGAV 198 (202)
T ss_dssp HHHHSCBBCTTCCTTSCCBCSSTGGGHHHHCC-
T ss_pred hhhcCCccCCCcCCCCceeccChhhHHHHHhhh
Confidence 999999999999999999999988888888753
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-33 Score=263.51 Aligned_cols=189 Identities=41% Similarity=0.803 Sum_probs=146.6
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+|+++|+|++++ . +|+.+.++++++ +||++||+|||++|||+|+.++|.|++++++|++++++|++||.|+++..
T Consensus 26 ~~G~~aP~F~l~~-~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~ 104 (221)
T 2c0d_A 26 LVTKKAYNFTAQG-LNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSH 104 (221)
T ss_dssp CTTSBCCCCEEEE-ECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEec-cccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 4899999999999 6 773248999999 99999999999999999999999999999999999999999999999889
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++|.+++..+....+++||++.|.+.++++.|++. +..|...|++||||++|+|++.+.++.+..++.+++++.|++++
T Consensus 105 ~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~-~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 105 LAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVL-YDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp HHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCE-ETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCccCCceEEEECCchHHHHHcCCc-ccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 99998764332222578999999999999999997 44444689999999999999999887766778999999999999
Q ss_pred hhhhcCccccCCccCCCcccccCccchhcccccC
Q psy224 513 FVAEHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 513 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
...+++.+||.+|++++++|++..+..++||..+
T Consensus 184 ~~~~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~ 217 (221)
T 2c0d_A 184 HVDTSGEVCPINWKKGQKAFKPTTESLIDYMNNA 217 (221)
T ss_dssp HHHHHCCSCC------------------------
T ss_pred hhhcCCCcCCCCCCCCCccccCCcHHHHHHHHhc
Confidence 9999999999999999999999888888888763
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=265.03 Aligned_cols=184 Identities=29% Similarity=0.518 Sum_probs=161.8
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+|+++|+|++.+ . +| .+++++++|| ++||+|||++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus 4 ~iG~~aP~F~l~~-~~~~G---~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~ 79 (220)
T 1xcc_A 4 HLGATFPNFTAKA-SGIDG---DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESH 79 (220)
T ss_dssp CTTCBCCCCEECB-TTCSS---CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCcEeec-ccCCC---cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 3899999999999 7 67 7999999998 88888877999999999999999999999999999999999999888
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccC----CC--cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE----TG--IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~----~g--~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++|.+..+.+....+++||+++|.+.++++.||+.... .+ ...|++||||++|+|++.+.++.+.+++.+++++
T Consensus 80 ~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~ 159 (220)
T 1xcc_A 80 DKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILR 159 (220)
T ss_dssp HHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 99988543221123899999999999999999997431 11 3479999999999999999888888889999999
Q ss_pred HHHhhHhhhhcCccccCCccCCCcccccC---ccchhccc
Q psy224 507 LVQAFQFVAEHGEVCPAGWKPGSKTMKAD---PSGSQEYF 543 (547)
Q Consensus 507 ~l~~l~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~ 543 (547)
.|+++|..+++++.||++|++|+++|++- .++.+.+|
T Consensus 160 ~i~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~ 199 (220)
T 1xcc_A 160 VLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISKHF 199 (220)
T ss_dssp HHHHHHHHHHSSEEBCTTCCTTSCEEECTTCCGGGHHHHC
T ss_pred HHHHHHhhhcCCcccCCCcCcCCceEeCCCCCHHHHHHHh
Confidence 99999999999999999999999999883 57788888
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=262.85 Aligned_cols=186 Identities=31% Similarity=0.499 Sum_probs=163.6
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
..+|+.+|+|++.+ .+| .+++++++|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.++
T Consensus 5 l~~G~~aP~F~l~~-~~G---~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~ 80 (224)
T 1prx_A 5 LLLGDVAPNFEANT-TVG---RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL 80 (224)
T ss_dssp CCTTCBCCCCEEEE-TTE---EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CCCcCCCCCcEEec-CCC---CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 44899999999999 777 7999999997 888888779999999999999999999999999999999999998888
Q ss_pred HHhhccccCCCC---CCcceeeecCCChHHHHHhCCcccCC------CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy224 434 AWCNIPRNKGGL---GDMAIPILSDKSMSIARSYGVLNEET------GIPYRGLFIIDDKQNLRQITINDLPVGRSVDET 504 (547)
Q Consensus 434 ~~~~~~~~~~~~---~~~~fp~l~D~~~~~~~~~~v~~~~~------g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~i 504 (547)
+|.++.+.+... .+++||++.|.+.++++.||+...+. ....|++||||++|+|++.+.++.+.+++.+++
T Consensus 81 ~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~ei 160 (224)
T 1prx_A 81 AWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEI 160 (224)
T ss_dssp HHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHH
T ss_pred HHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 998874333221 38999999999999999999975321 235799999999999999999888888899999
Q ss_pred HHHHHhhHhhhhcCccccCCccCCCcccccC---ccchhcccc
Q psy224 505 LRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD---PSGSQEYFK 544 (547)
Q Consensus 505 l~~l~~l~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~ 544 (547)
++.|++++..+++++.||++|++|+++|+.- .++++++|+
T Consensus 161 l~~i~~l~~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~ 203 (224)
T 1prx_A 161 LRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFP 203 (224)
T ss_dssp HHHHHHHHHHHHHCEEBCTTCCTTSCEEECTTSCHHHHHHHCT
T ss_pred HHHHHHHHhhccCCcCCCCCCCCCCceEeCCCCCHHHHHHhhc
Confidence 9999999999999999999999999999873 477888885
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=267.33 Aligned_cols=185 Identities=29% Similarity=0.499 Sum_probs=163.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| .+++++++|| ++||+|||++|||+|+.+++.|++++++|+++|++||+||+|+.+.+++
T Consensus 4 ~iG~~aPdF~l~~-~~G---~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~ 79 (233)
T 2v2g_A 4 TLGEVFPNFEADS-TIG---KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKE 79 (233)
T ss_dssp CTTCBCCCCEEEE-TTC---CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred CCCCCCCCcEEec-CCC---CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHH
Confidence 3899999999999 888 7999999997 9999999999999999999999999999999999999999999998899
Q ss_pred HhhccccCCCCC--CcceeeecCCChHHHHHhCCcccC----C--CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 435 WCNIPRNKGGLG--DMAIPILSDKSMSIARSYGVLNEE----T--GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 435 ~~~~~~~~~~~~--~~~fp~l~D~~~~~~~~~~v~~~~----~--g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
|.+....+. .. +++||+++|.++++++.||+.... . ....|++||||++|+|++.+.++.+.+++++++++
T Consensus 80 ~~~~i~~~~-~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr 158 (233)
T 2v2g_A 80 WSEDVKCLS-GVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILR 158 (233)
T ss_dssp HHHHHHHHH-TCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred HHHHHHHhh-CcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 988543221 12 579999999999999999997431 1 23479999999999999999888888889999999
Q ss_pred HHHhhHhhhhcCccccCCccCCCcccccC---ccchhccccc
Q psy224 507 LVQAFQFVAEHGEVCPAGWKPGSKTMKAD---PSGSQEYFKT 545 (547)
Q Consensus 507 ~l~~l~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~ 545 (547)
.|+++|..+++++.||++|++|+++|+.- .++++++|+.
T Consensus 159 ~l~~Lq~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~~ 200 (233)
T 2v2g_A 159 VIDSLQLTAQKKVATPADWQPGDRCMVVPGVSAEEAKTLFPN 200 (233)
T ss_dssp HHHHHHHHHHSSEEBCTTCCTTSCEEECTTSCHHHHHHHCTT
T ss_pred HHHHHHhhccCCccCCCCcCcCCceEeCCCCCHHHHHHhcCC
Confidence 99999999999999999999999999873 3777887764
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.1e-32 Score=252.54 Aligned_cols=187 Identities=43% Similarity=0.859 Sum_probs=153.6
Q ss_pred cCCCCCCeeecccc--CCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 357 LEKPAPEFEGQAVV--NGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 357 ~g~~~p~~~l~~~~--~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
+|+++|+|++.+ . +|+++.++++++ +||++||+|||++|||+|+.+++.|++++++|++++++|++||.|+++.++
T Consensus 2 ~G~~aP~f~l~~-~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~ 80 (192)
T 2h01_A 2 FQGQAPSFKAEA-VFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHL 80 (192)
T ss_dssp CSSBCCCCEEEE-ECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred CCCcCCCcEeEe-eecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHH
Confidence 789999999999 6 773348999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.+++..+....+++||++.|.+.++++.|++.. ..|...|++||||++|+|++.+.++.+..++.+++++.|++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 159 (192)
T 2h01_A 81 AWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF-NESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQH 159 (192)
T ss_dssp HHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHH
T ss_pred HHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcC-cCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHhh
Confidence 99988755544447899999999999999999985 33445899999999999999998877777789999999999999
Q ss_pred hhhcCccccCCccCCCcccccCccchhccccc
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADPSGSQEYFKT 545 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 545 (547)
..++++.||.+|++++++|++.....++||..
T Consensus 160 ~~~~~~~cp~~w~~~~~~~~~~~~~~~~~~~~ 191 (192)
T 2h01_A 160 HEKYGDVCPANWQKGKESMKPSEEGVAKYLSN 191 (192)
T ss_dssp HHHHCCCCCSSCCCC-----------------
T ss_pred hhhcCCCccCCCCCCCccccCCchhhhhHhhc
Confidence 99999999999999999999998888888764
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=255.85 Aligned_cols=181 Identities=65% Similarity=1.144 Sum_probs=163.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+|+++++++++++||++||+||+++||++|+.++|.|++++++|+++|++||+||.|++++.++|
T Consensus 41 ~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~ 120 (222)
T 3ztl_A 41 LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAW 120 (222)
T ss_dssp CSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 49999999999972267668999999999999999995599999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+.++++....+++||++.|.+.++++.|++.....+...|++||||++|+|++.+.+..+..+.++++++.|++++...
T Consensus 121 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l~~~~ 200 (222)
T 3ztl_A 121 DNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVE 200 (222)
T ss_dssp HHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhccc
Confidence 99876665555899999999999999999998666566789999999999999999888887778999999999999999
Q ss_pred hcCccccCCccCCCcccccCc
Q psy224 516 EHGEVCPAGWKPGSKTMKADP 536 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~ 536 (547)
++++.||++|+++++++.+.+
T Consensus 201 ~~~~~c~~~w~~~~~~~~~~~ 221 (222)
T 3ztl_A 201 KHGEVCPVNWKRGQHGIKVNQ 221 (222)
T ss_dssp HHSCBBCTTCCTTSCCBCC--
T ss_pred ccCccCCcCcCCCCccccCCC
Confidence 999999999999999988754
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=247.84 Aligned_cols=177 Identities=34% Similarity=0.681 Sum_probs=156.5
Q ss_pred cCCCCCCeeecccc-CCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 357 LEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~-~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
+|+++|+|++++ . +|+++.+++++++||++||+||+++|||+|+.++|.|++++++|+++|++|++||.|+++.+++|
T Consensus 3 ~G~~aP~f~l~~-~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~ 81 (186)
T 1n8j_A 3 INTKIKPFKNQA-FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 81 (186)
T ss_dssp TTCBCCCCEEEE-EETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred CCCcCCCcEeec-ccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 799999999999 6 57334899999999999999997799999999999999999999999999999999999888899
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+++. ...+++||+++|.+.++++.||+.....+...|++||||++|+|++.+.++.+..++.+++++.|++++...
T Consensus 82 ~~~~~---~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 158 (186)
T 1n8j_A 82 HSSSE---TIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVA 158 (186)
T ss_dssp HHHCT---TGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHcC---cccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 88641 111689999999999999999998544444579999999999999999887766778999999999999888
Q ss_pred hc-CccccCCccCCCcccccCcc
Q psy224 516 EH-GEVCPAGWKPGSKTMKADPS 537 (547)
Q Consensus 516 ~~-~~~~~~~w~~~~~~~~~~~~ 537 (547)
.+ ++.||++|++|+++|+...+
T Consensus 159 ~~p~~~~p~~w~~~~~~~~~~~~ 181 (186)
T 1n8j_A 159 AHPGEVCPAKWKEGEATLAPSLD 181 (186)
T ss_dssp HSTTCBBCTTCCTTSCCBCCSST
T ss_pred hcCCCccCCCCCCCCccccCChH
Confidence 88 99999999999999988654
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=257.20 Aligned_cols=183 Identities=33% Similarity=0.628 Sum_probs=163.2
Q ss_pred ccCCCCCCeeeccccCCceeeEec-cCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKL-SQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l-~~~--~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+|+++|+|++.+ .+| .+++ +++ +||++||+|||++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus 6 ~iG~~aPdF~l~~-~~G---~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~ 81 (249)
T 3a2v_A 6 LIGERFPEMEVTT-DHG---VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSH 81 (249)
T ss_dssp CTTSBCCCEEEEE-TTE---EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEEc-CCC---CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHH
Confidence 4899999999999 778 6999 999 99998888777999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCc-ceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI-PYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~-~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+|.+..+.+... +++||+++|.++++++.||+..+..+. ..|++||||++|+|++.++++.+.+++.+++++.|+++
T Consensus 82 ~~w~~~~~~~~~~-~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 82 IKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp HHHHHHHHHHTCC-CCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence 8998865443322 899999999999999999998654443 68999999999999999998888889999999999999
Q ss_pred HhhhhcCccccCCccC-----CCcccccC---ccchhcccc
Q psy224 512 QFVAEHGEVCPAGWKP-----GSKTMKAD---PSGSQEYFK 544 (547)
Q Consensus 512 ~~~~~~~~~~~~~w~~-----~~~~~~~~---~~~~~~~~~ 544 (547)
|..+++++.||++| + |+++|++. .++.+..|+
T Consensus 161 q~~~~~~~~~Pa~W-~~~~~~g~~~~~~~~~~~~~~~~~~~ 200 (249)
T 3a2v_A 161 KLGDSLKRAVPADW-PNNEIIGEGLIVPPPTTEDQARARME 200 (249)
T ss_dssp HHHHHHTCBBCTTT-TSBTTTBTCEEECCCCSHHHHHHHHH
T ss_pred HhccccCccCCCCC-CCCCCCCCCeecCCCCCHHHHHHhcc
Confidence 99999999999999 9 99999995 366666665
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=240.61 Aligned_cols=185 Identities=50% Similarity=0.886 Sum_probs=146.1
Q ss_pred cCCCCCCeeecccc--CCcee---eEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChh
Q psy224 357 LEKPAPEFEGQAVV--NGQFK---NIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHF 430 (547)
Q Consensus 357 ~g~~~p~~~l~~~~--~G~~~---~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~ 430 (547)
+|+++|+|++.+ . +| + .++++++ +||++||+|||++|||+|+.++|.|++++++|++++++|++|+.|+++
T Consensus 3 ~G~~~P~f~l~~-~~~~G--~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~ 79 (198)
T 1zof_A 3 VTKLAPDFKAPA-VLGNN--EVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQ 79 (198)
T ss_dssp TTSBCCCCEEEE-ECTTS--CEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred CCCcCCceEeec-ccCCC--cccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 799999999999 6 78 6 8999999 999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 431 SHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
..++|.++.+.+...++++||++.|.+.++++.|++..+. |...|++||||++|+|++.+.+..+..++.+++++.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~-g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~ 158 (198)
T 1zof_A 80 VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA 158 (198)
T ss_dssp HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETT-TEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccC-CcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 9999998855444334899999999999999999997432 335899999999999999998877767788999999999
Q ss_pred hHhhhhcCccccCCccCCCcccccCccchhccccc
Q psy224 511 FQFVAEHGEVCPAGWKPGSKTMKADPSGSQEYFKT 545 (547)
Q Consensus 511 l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 545 (547)
++...+++..||.+|..++++|+++.+..+.++..
T Consensus 159 l~~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~ 193 (198)
T 1zof_A 159 LLHFEEHGEVCPAGWRKGDKGMKATHQGVAEYLKE 193 (198)
T ss_dssp HHHHHSSCCCCC-----------------------
T ss_pred HHHhhccCCccCCcCcCCCccccCCcccccceecc
Confidence 99999999999999999999999987666666654
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=236.22 Aligned_cols=175 Identities=38% Similarity=0.690 Sum_probs=142.2
Q ss_pred cCCCCCCeeeccccCCcee----eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 357 LEKPAPEFEGQAVVNGQFK----NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~----~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
+|+++|+|++.+ .+| + .+++++++||++||+|||++|||+|+.+++.|++++++|+++++++++|+.|+++..
T Consensus 3 ~G~~~P~f~l~~-~~g--~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~ 79 (187)
T 1we0_A 3 IGTEVQPFRAQA-FQS--GKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVH 79 (187)
T ss_dssp TTCBCCCCEEEE-ECS--SSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCcCCCeEEec-cCC--CccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence 799999999999 777 6 899999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++|.+++... .+++||++.|.+.++++.|++.....+...|++||||++|+|++.+.+..+..++.+++++.|++++
T Consensus 80 ~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 156 (187)
T 1we0_A 80 KAWHENSPAV---GSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ 156 (187)
T ss_dssp HHHHHSCHHH---HTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred HHHHHHhccc---cCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 8888764110 1588999999999999999998655455689999999999999999887766678899999999999
Q ss_pred hhhhc-CccccCCccCCCcccccCcc
Q psy224 513 FVAEH-GEVCPAGWKPGSKTMKADPS 537 (547)
Q Consensus 513 ~~~~~-~~~~~~~w~~~~~~~~~~~~ 537 (547)
....+ +..||.+|++++++|+..++
T Consensus 157 ~~~~~~~~~~p~~w~~~~~~~~~~~~ 182 (187)
T 1we0_A 157 YVRENPGEVCPAKWEEGGETLKPSLD 182 (187)
T ss_dssp HHHTSTTCCC----------------
T ss_pred hhhhCCCcccccccccCCceeecCHH
Confidence 88888 99999999999999997654
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=225.73 Aligned_cols=146 Identities=33% Similarity=0.529 Sum_probs=126.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++++ .+| +++++++++||++||+|||++|||+|+.++|.|++++++|+++++++++||.|+++.+++|
T Consensus 5 ~vG~~aPdF~l~~-~~G--~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~ 81 (157)
T 4g2e_A 5 EIGELAPDFELPD-TEL--KKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAF 81 (157)
T ss_dssp CTTSBCCCCEEEB-TTS--CEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHH
T ss_pred CCCCCCcCeEeEC-CCC--CEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHH
Confidence 4899999999999 899 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC-----cceeEEEEEcCCCcEEEEEecCCCCC-CCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-----IPYRGLFIIDDKQNLRQITINDLPVG-RSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g-----~~~p~~~lid~~G~v~~~~~~~~~~~-~~~~~il~~l~ 509 (547)
.+++ +++||+++|++++++++||+.....+ ...|++||||++|+|++.++++...+ .+++++++.|+
T Consensus 82 ~~~~-------~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~ 154 (157)
T 4g2e_A 82 KEHN-------KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVK 154 (157)
T ss_dssp HHHT-------TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred HHHc-------CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 9886 89999999999999999998754322 34699999999999999998775443 47899999998
Q ss_pred hh
Q psy224 510 AF 511 (547)
Q Consensus 510 ~l 511 (547)
+|
T Consensus 155 ~L 156 (157)
T 4g2e_A 155 SL 156 (157)
T ss_dssp HT
T ss_pred Hh
Confidence 76
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=227.11 Aligned_cols=173 Identities=35% Similarity=0.674 Sum_probs=134.5
Q ss_pred ccCCCCCCeeeccccC-------------CceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEE
Q psy224 356 ALEKPAPEFEGQAVVN-------------GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVI 422 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~-------------G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi 422 (547)
.+|+++|+|++++ .+ |+++.+++++++||++||+|||++|||+|+.+++.|.+++++|++++++|+
T Consensus 5 ~~G~~~P~f~l~~-~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv 83 (195)
T 2bmx_A 5 TIGDQFPAYQLTA-LIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQIL 83 (195)
T ss_dssp CTTCBCCCCEEEE-ECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEE
T ss_pred CCCCcCCCcCccc-ccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 4899999999999 66 423699999999999999999999999999999999999999998899999
Q ss_pred EEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHH
Q psy224 423 ACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVD 502 (547)
Q Consensus 423 ~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~ 502 (547)
+|+.|+++..++|.+++.. ..+++||++.|.+.++++.|++... .+...|++||||++|+|++.+.+..+..++.+
T Consensus 84 ~Vs~d~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ 159 (195)
T 2bmx_A 84 GVSIDSEFAHFQWRAQHND---LKTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVGRNVD 159 (195)
T ss_dssp EEESSCHHHHHHHHHHCTT---GGGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECTTCCCCHH
T ss_pred EEECCCHHHHHHHHHHhcc---ccCCceeEEeCCchHHHHHhCCccc-CCCccceEEEEcCCCeEEEEEecCCCCCCCHH
Confidence 9999998888899886521 1268899999999999999999844 34458999999999999999988876667899
Q ss_pred HHHHHHHhhHhhhhcCccccCCccCCCcccccCcc
Q psy224 503 ETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPS 537 (547)
Q Consensus 503 ~il~~l~~l~~~~~~~~~~~~~w~~~~~~~~~~~~ 537 (547)
++++.|+++.. +..||.+|++++++|.+.+|
T Consensus 160 ~l~~~l~~l~~----~~~~p~~w~~~~~~~~~~~~ 190 (195)
T 2bmx_A 160 EVLRVLDALQS----DELCASNWRKGDPTLDAGEL 190 (195)
T ss_dssp HHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHhh----CCCcCcccccCCcccCCChH
Confidence 99999999885 67999999999999988765
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-29 Score=229.28 Aligned_cols=149 Identities=26% Similarity=0.440 Sum_probs=133.7
Q ss_pred hhccCCCCCCeeeccccCCceeeEeccCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhh
Q psy224 354 SYALEKPAPEFEGQAVVNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFS 431 (547)
Q Consensus 354 ~~~~g~~~p~~~l~~~~~G~~~~~~l~~~--~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~ 431 (547)
+..+|+++|+|++++ .+| ++++|+++ +||++||+|||++|||+|+.+++.|++++++|+++|+++++||.|+++.
T Consensus 4 ml~vG~~aPdF~l~~-~~G--~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~ 80 (164)
T 4gqc_A 4 LVELGEKAPDFTLPN-QDF--EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWC 80 (164)
T ss_dssp CCCTTSBCCCCEEEB-TTS--CEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHH
T ss_pred cccCCCCCcCcEeEC-CCC--CEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHH
Confidence 334999999999999 889 69999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC----CcceeEEEEEcCCCcEEEEEecCCCCCC-CHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET----GIPYRGLFIIDDKQNLRQITINDLPVGR-SVDETLR 506 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~----g~~~p~~~lid~~G~v~~~~~~~~~~~~-~~~~il~ 506 (547)
+++|.+++ +++||+++|++++++++||+..+.. +...|++||||++|+|++.++++.+..+ +++++|+
T Consensus 81 ~~~~~~~~-------~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~ 153 (164)
T 4gqc_A 81 LKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVR 153 (164)
T ss_dssp HHHHHHHT-------TCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHH
T ss_pred HHHHHHhc-------CcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHH
Confidence 99999886 9999999999999999999975331 2346899999999999999987765444 7999999
Q ss_pred HHHhhH
Q psy224 507 LVQAFQ 512 (547)
Q Consensus 507 ~l~~l~ 512 (547)
.|+++.
T Consensus 154 ~l~~l~ 159 (164)
T 4gqc_A 154 EANKIA 159 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=211.71 Aligned_cols=146 Identities=21% Similarity=0.345 Sum_probs=130.6
Q ss_pred hccCCCCCCeeec-cccCCceeeEeccC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHhhCCcEEEE-EeCCChh
Q psy224 355 YALEKPAPEFEGQ-AVVNGQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEFKKINTQVIA-CSTDSHF 430 (547)
Q Consensus 355 ~~~g~~~p~~~l~-~~~~G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~~~vi~-is~d~~~ 430 (547)
..+|+++|+|+++ + .+| +.+++++ ++||++||+|||++|||+|+ .|+|.|++++++|+++|+++|+ ||.|+++
T Consensus 15 ~~vG~~aPdf~l~~~-~~g--~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~ 91 (173)
T 3mng_A 15 IKVGDAIPAVEVFEG-EPG--NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAF 91 (173)
T ss_dssp CCTTCBCCCCEEECS-STT--CEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHH
T ss_pred CCCCCCCCCeEeeeC-CCC--CEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 3499999999999 8 788 6999999 59999999999999999999 5999999999999999999997 9999999
Q ss_pred hHHHHhhccccCCCCCCcc--eeeecCCChHHHHHhCCcccCC-----C--cceeEEEEEcCCCcEEEEEecCCCCCCCH
Q psy224 431 SHLAWCNIPRNKGGLGDMA--IPILSDKSMSIARSYGVLNEET-----G--IPYRGLFIIDDKQNLRQITINDLPVGRSV 501 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~~~v~~~~~-----g--~~~p~~~lid~~G~v~~~~~~~~~~~~~~ 501 (547)
..++|.+++ +++ ||+++|++++++++||+..++. | ...|++|||| +|+|++.++++.+.++++
T Consensus 92 ~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~~~ 163 (173)
T 3mng_A 92 VTGEWGRAH-------KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGLTC 163 (173)
T ss_dssp HHHHHHHHT-------TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCSST
T ss_pred HHHHHHHHh-------CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCcch
Confidence 999999987 777 9999999999999999986532 1 3579999999 999999999998888888
Q ss_pred HHHHHHHHhh
Q psy224 502 DETLRLVQAF 511 (547)
Q Consensus 502 ~~il~~l~~l 511 (547)
.++.+.|+.|
T Consensus 164 ~~~~~vl~~l 173 (173)
T 3mng_A 164 SLAPNIISQL 173 (173)
T ss_dssp TSHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 8888887754
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=207.36 Aligned_cols=149 Identities=32% Similarity=0.419 Sum_probs=135.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCe-EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQY-VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~-~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| +.+++++++||+ +||+|||++|||+|+.+++.|++++++|+++|++|++|+.|+++..++
T Consensus 3 ~~G~~~P~f~l~~-~~G--~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~ 79 (161)
T 3drn_A 3 KVGDKAPLFEGIA-DNG--EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKR 79 (161)
T ss_dssp CTTSBCCCCEEEE-TTS--CEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHH
T ss_pred CCCCcCCCeEeec-CCC--CEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHH
Confidence 3899999999999 889 699999999997 999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.+++ +++||++.|.+.++++.|++... ....|++||||++|+|++.+.+.......++++++.|++++..
T Consensus 80 ~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~--~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~~~ 150 (161)
T 3drn_A 80 FKEKY-------KLPFILVSDPDKKIRELYGAKGF--ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEE 150 (161)
T ss_dssp HHHHT-------TCCSEEEECTTSHHHHHTTCCCS--SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------CCCceEEECCcHHHHHHcCCCCc--CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhhhh
Confidence 99887 89999999999999999999721 2237999999999999999988666677899999999999865
Q ss_pred hh
Q psy224 515 AE 516 (547)
Q Consensus 515 ~~ 516 (547)
.+
T Consensus 151 ~~ 152 (161)
T 3drn_A 151 EI 152 (161)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=207.89 Aligned_cols=145 Identities=26% Similarity=0.399 Sum_probs=129.6
Q ss_pred cCCC----CCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 357 LEKP----APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 357 ~g~~----~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
+|+. +|+|++++ .+| +++++++++||++||+||+++|||+|+.+++.|++++++|+++|++|++|+.|+++..
T Consensus 23 ~Gd~ig~~aP~f~l~~-~~G--~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~ 99 (179)
T 3ixr_A 23 IGDTLNHSLLNHPLML-SGS--TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSH 99 (179)
T ss_dssp TTCBCCHHHHHCCEEE-GGG--EEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHH
T ss_pred cCcccCCcCCCeeEEC-CCC--CEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 6666 99999999 889 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC--C----cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--G----IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--g----~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++|.+++ +++||++.|++.++++.|++..... + ...|++||||++|+|++.+ .+.....+++++++
T Consensus 100 ~~~~~~~-------~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-~~~~~~~~~~~il~ 171 (179)
T 3ixr_A 100 DSFCAKQ-------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-RQVKVPGHAEEVLN 171 (179)
T ss_dssp HHHHHHH-------TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-CSCCSTTHHHHHHH
T ss_pred HHHHHHc-------CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-cCCCCCCCHHHHHH
Confidence 9999987 8999999999999999999975321 1 1259999999999999999 45556668899999
Q ss_pred HHHhhH
Q psy224 507 LVQAFQ 512 (547)
Q Consensus 507 ~l~~l~ 512 (547)
.|++++
T Consensus 172 ~l~~l~ 177 (179)
T 3ixr_A 172 KLKAHA 177 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999876
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=203.02 Aligned_cols=147 Identities=28% Similarity=0.453 Sum_probs=130.8
Q ss_pred hccCCCCCCee--eccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 355 YALEKPAPEFE--GQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 355 ~~~g~~~p~~~--l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
..+|+++|+|+ +.+ .+| +++++++++||++||+||+++|||+|+.+++.|++++++|+++|++|++|+.|+++..
T Consensus 7 l~~G~~~P~f~~~l~~-~~G--~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~ 83 (163)
T 3gkn_A 7 AVLELPAATFDLPLSL-SGG--TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSH 83 (163)
T ss_dssp CCCCCCGGGGGCCEEC-STT--CEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred cccCCcCCCccccccC-CCC--CEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 34899999999 999 899 6999999999999999995599999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC--Cc----ceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--GI----PYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--g~----~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++|.+++ +++||++.|.+.++++.|++..... +. ..|++||||++|+|++.+ .......+++++++
T Consensus 84 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~~~~~il~ 155 (163)
T 3gkn_A 84 DNFCAKQ-------GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAGHADAVLA 155 (163)
T ss_dssp HHHHHHH-------CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-CSCCSTTHHHHHHH
T ss_pred HHHHHHh-------CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-cCCCcccCHHHHHH
Confidence 9999987 8999999999999999999975321 10 179999999999999999 55555667899999
Q ss_pred HHHhhH
Q psy224 507 LVQAFQ 512 (547)
Q Consensus 507 ~l~~l~ 512 (547)
.|++++
T Consensus 156 ~l~~l~ 161 (163)
T 3gkn_A 156 ALKAHA 161 (163)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998875
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=200.79 Aligned_cols=144 Identities=23% Similarity=0.359 Sum_probs=127.8
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++++ .+| +.+++++++||++||+||+++|||+|+.+++.|++++++| ++++|++||.|+++..++|
T Consensus 17 ~~G~~~P~f~l~~-~~G--~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~~~~ 91 (163)
T 1psq_A 17 QVGDKALDFSLTT-TDL--SKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQKRW 91 (163)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCEEEEc-CCC--cEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHHHHH
Confidence 3899999999999 888 6999999999999999997799999999999999999999 6999999999999999999
Q ss_pred hhccccCCCCCCc-ceeeecC-CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC-CCCCCHHHHHHHHHhh
Q psy224 436 CNIPRNKGGLGDM-AIPILSD-KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL-PVGRSVDETLRLVQAF 511 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D-~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~~~il~~l~~l 511 (547)
.+++ ++ +||++.| .+.++++.|++.....+...|++||||++|+|++.+.+.. ....+.+++++.|+++
T Consensus 92 ~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~l 163 (163)
T 1psq_A 92 CGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163 (163)
T ss_dssp HHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred HHhc-------CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHhC
Confidence 9886 88 9999999 8899999999985433444699999999999999998753 3445689999998864
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-25 Score=202.00 Aligned_cols=143 Identities=23% Similarity=0.337 Sum_probs=128.4
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++++ .+| +.+++++++||++||+||+++|||+|+.+++.|++++++ ++++|++||.|+++..++|
T Consensus 21 ~~G~~aP~f~l~~-~~G--~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d~~~~~~~~ 94 (166)
T 3p7x_A 21 NEGDFAPDFTVLD-NDL--NQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISADLPFAQKRW 94 (166)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCeEEEc-CCC--CEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECCCHHHHHHH
Confidence 3899999999999 889 699999999999999999999999999999999999887 6999999999999999999
Q ss_pred hhccccCCCCCCc-ceeeecCC-ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecC-CCCCCCHHHHHHHHHhh
Q psy224 436 CNIPRNKGGLGDM-AIPILSDK-SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITIND-LPVGRSVDETLRLVQAF 511 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D~-~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~-~~~~~~~~~il~~l~~l 511 (547)
.+++ ++ +||+++|. +.++++.||+.....+...|++||||++|+|++.+++. .....+.+++++.|+++
T Consensus 95 ~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~l 166 (166)
T 3p7x_A 95 CASA-------GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI 166 (166)
T ss_dssp HHHH-------TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHTC
T ss_pred HHHc-------CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhcC
Confidence 9987 88 89999999 89999999998655555589999999999999998655 44455789999998764
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-25 Score=200.17 Aligned_cols=141 Identities=18% Similarity=0.323 Sum_probs=123.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+||+++|||+|+.++|.|++++++| ++++|++||.|+++.+++|
T Consensus 18 ~~G~~~P~f~l~~-~~G--~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~ 92 (165)
T 1q98_A 18 QVGEIVENFILVG-NDL--ADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPFAQARF 92 (165)
T ss_dssp CTTCBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHHHHTTC
T ss_pred CCCCCCCCeEEEC-CCC--CEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHHHHHHH
Confidence 3899999999999 888 6999999999999999999999999999999999999999 6999999999998888888
Q ss_pred hhccccCCCCCCc-ceeeecCC-ChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEec-CCCCCCCHHHHHHHH
Q psy224 436 CNIPRNKGGLGDM-AIPILSDK-SMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITIN-DLPVGRSVDETLRLV 508 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D~-~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~-~~~~~~~~~~il~~l 508 (547)
.+++ ++ +||+++|. +.++++.|++.... .|...|++||||++|+|++.+.+ ......+++++++.|
T Consensus 93 ~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~~l 164 (165)
T 1q98_A 93 CGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL 164 (165)
T ss_dssp TTTT-------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTT
T ss_pred HHHc-------CCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHHhh
Confidence 8765 88 79999998 79999999997532 23346999999999999999985 344556788888765
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=204.38 Aligned_cols=142 Identities=24% Similarity=0.388 Sum_probs=126.1
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++++ .+| +.+++++++||++||+||+++|||+|+.+++.|++++++| +|++|++||.|+++..++|
T Consensus 53 ~~G~~aPdf~l~d-~~G--~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~~~~~~~ 127 (200)
T 3zrd_A 53 QIGDKAKDFTLVA-KDL--SDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLPFAQSRF 127 (200)
T ss_dssp CTTCBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHHTTC
T ss_pred CCCCCCCCeEEEC-CCC--CEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCHHHHHHH
Confidence 3899999999999 889 6999999999999999999999999999999999999999 6999999999998888888
Q ss_pred hhccccCCCCCCc-ceeeecCC-ChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecC-CCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDM-AIPILSDK-SMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITIND-LPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D~-~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~-~~~~~~~~~il~~l~ 509 (547)
.+++ ++ +||+++|. +.+++++||+.... .+...|++||||++|+|++.+++. .....+++++++.|+
T Consensus 128 ~~~~-------~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~Lk 200 (200)
T 3zrd_A 128 CGAE-------GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAALK 200 (200)
T ss_dssp TTTT-------TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHHHC
T ss_pred HHHc-------CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHhhC
Confidence 8765 89 99999999 89999999998543 244579999999999999999755 555668888888763
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-25 Score=198.34 Aligned_cols=142 Identities=20% Similarity=0.317 Sum_probs=122.1
Q ss_pred ccCCCCCCeeec--cccCCceeeEeccC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHhhCCcE-EEEEeCCChh
Q psy224 356 ALEKPAPEFEGQ--AVVNGQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEFKKINTQ-VIACSTDSHF 430 (547)
Q Consensus 356 ~~g~~~p~~~l~--~~~~G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~~~-vi~is~d~~~ 430 (547)
.+|+++|+|+++ + .+|..+.+++++ ++||++||+|||++|||+|+ .++|.|++++++|+++|++ |++||.|+++
T Consensus 5 ~~G~~aP~f~l~~~~-~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~ 83 (162)
T 1tp9_A 5 AVGDVLPDGKLAYFD-EQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPF 83 (162)
T ss_dssp CTTCBCCCCEEEEEC-TTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHH
T ss_pred CCCCCCCCeEEEeec-CCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Confidence 389999999986 5 666224899999 89999999999999999999 9999999999999999999 9999999999
Q ss_pred hHHHHhhccccCCCCCCc--ceeeecCCChHHHHHhCCcccC--CC---cceeEEEEEcCCCcEEEEEecCCCCCC---C
Q psy224 431 SHLAWCNIPRNKGGLGDM--AIPILSDKSMSIARSYGVLNEE--TG---IPYRGLFIIDDKQNLRQITINDLPVGR---S 500 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~--~fp~l~D~~~~~~~~~~v~~~~--~g---~~~p~~~lid~~G~v~~~~~~~~~~~~---~ 500 (547)
.+++|.+++ ++ +||+++|++.+++++||+.... .| ...|++|||| +|+|++.++++ +..+ +
T Consensus 84 ~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~~~~~~~ 154 (162)
T 1tp9_A 84 VMKAWAKSY-------PENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG-GGEFTVSS 154 (162)
T ss_dssp HHHHHHHTC-------TTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS-SSCCSSCS
T ss_pred HHHHHHHhc-------CCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC-CCCCccCC
Confidence 999999876 77 8999999999999999997432 12 1379999999 99999999887 4433 5
Q ss_pred HHHHHHH
Q psy224 501 VDETLRL 507 (547)
Q Consensus 501 ~~~il~~ 507 (547)
.+++|+.
T Consensus 155 ~~~vl~~ 161 (162)
T 1tp9_A 155 AEDILKD 161 (162)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7777654
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=195.89 Aligned_cols=147 Identities=28% Similarity=0.492 Sum_probs=131.8
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| +.+++++++|| ++||+||+++|||+|+.+++.|++++++|+++++++++|+.|+++..++
T Consensus 10 ~~G~~~p~f~l~~-~~G--~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~ 86 (160)
T 1xvw_A 10 NVGATAPDFTLRD-QNQ--QLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKI 86 (160)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHH
T ss_pred CCCCCCCCeEeEc-CCC--CEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHH
Confidence 4899999999999 888 69999999998 9999998899999999999999999999998899999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCC--ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDMAIPILSDK--SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~--~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+++ +++||++.|. +.++++.|++.....+.+.|++||||++|+|++.+.+..+...+++++++.|++++
T Consensus 87 ~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 159 (160)
T 1xvw_A 87 WATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159 (160)
T ss_dssp HHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred HHHhc-------CCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 99887 8999999995 89999999997543333233999999999999999888766678999999999876
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=201.44 Aligned_cols=142 Identities=16% Similarity=0.085 Sum_probs=126.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcH-----HHHHHHHHHHHHHhhCCcEEEEEeCCChh
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP-----TEIIAFSDRAEEFKKINTQVIACSTDSHF 430 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~-----~~~~~l~~~~~~~~~~~~~vi~is~d~~~ 430 (547)
.+|+++|+|+|++ .+| +.+++++++||++||+|||+.|||+|+ .+++.|+++ | +|++|++||.|+++
T Consensus 23 ~vG~~APdFtL~d-~~G--~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~Ds~~ 94 (224)
T 3keb_A 23 RKGDYLPSFMLVD-DQK--HDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITVDSPS 94 (224)
T ss_dssp CTTCBCCCCEEEE-TTS--CEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEESSCHH
T ss_pred CCCCCCCCeEEEC-CCC--CEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEECCCHH
Confidence 4999999999999 888 699999999999999999888899999 999999887 4 69999999999999
Q ss_pred hHHHHhhccccCCCCCCc-ceeeecCC-ChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecCCC-CCCCHHHH
Q psy224 431 SHLAWCNIPRNKGGLGDM-AIPILSDK-SMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITINDLP-VGRSVDET 504 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~-~fp~l~D~-~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~~~-~~~~~~~i 504 (547)
.+++|.+++ ++ +||+++|. +.++++.||+..++ .|...|++||||++|+|++.++.+.. ...+++++
T Consensus 95 ~~~~f~~~~-------gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~ev 167 (224)
T 3keb_A 95 SLARARHEH-------GLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAI 167 (224)
T ss_dssp HHHHHHHHH-------CCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHH
T ss_pred HHHHHHHHc-------CCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHH
Confidence 999999987 88 79999998 69999999998654 35568999999999999999976543 34579999
Q ss_pred HHHHHhhH
Q psy224 505 LRLVQAFQ 512 (547)
Q Consensus 505 l~~l~~l~ 512 (547)
++.|+.++
T Consensus 168 l~~L~~l~ 175 (224)
T 3keb_A 168 EKLLQEGE 175 (224)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999887
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=196.46 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=121.7
Q ss_pred ccCCCCCCeeec-cccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHhhCCc-EEEEEeCCChhh
Q psy224 356 ALEKPAPEFEGQ-AVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEFKKINT-QVIACSTDSHFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~-~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~-~vi~is~d~~~~ 431 (547)
.+|+++|+|+++ + .+| +.++++++ +||++||+|||++|||+|+. ++|.|++++++|+++|+ +|++||.|+++.
T Consensus 4 ~~G~~aP~f~l~~~-~~G--~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~ 80 (167)
T 2wfc_A 4 KEGDKLPAVTVFGA-TPN--DKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFV 80 (167)
T ss_dssp CTTCBCCCCEEESS-STT--CEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHH
T ss_pred CCCCcCCCcEeecC-CCC--cEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHH
Confidence 389999999999 8 888 69999999 99999999999999999999 99999999999999999 999999999999
Q ss_pred HHHHhhccccCCCCCCcc--eeeecCCChHHHHHhCCcccC-----CCcceeEEEEEcCCCcEEEEEecCCCCCCC---H
Q psy224 432 HLAWCNIPRNKGGLGDMA--IPILSDKSMSIARSYGVLNEE-----TGIPYRGLFIIDDKQNLRQITINDLPVGRS---V 501 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~~~v~~~~-----~g~~~p~~~lid~~G~v~~~~~~~~~~~~~---~ 501 (547)
.++|.++. +++ ||+++|++++++++||+.... .....|++||| ++|+|++.++++...... .
T Consensus 81 ~~~~~~~~-------~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~~~~~~~~~~ 152 (167)
T 2wfc_A 81 MDAWGKAH-------GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPDGKGLTCSLA 152 (167)
T ss_dssp HHHHHHHT-------TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTTSSSSSTTSH
T ss_pred HHHHHHhc-------CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCCCCcceeccH
Confidence 99999986 777 999999999999999987531 01135999999 999999999887654443 4
Q ss_pred HHHHHH
Q psy224 502 DETLRL 507 (547)
Q Consensus 502 ~~il~~ 507 (547)
+.+++.
T Consensus 153 ~~~~~~ 158 (167)
T 2wfc_A 153 PNILSQ 158 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-24 Score=197.38 Aligned_cols=143 Identities=24% Similarity=0.307 Sum_probs=126.4
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+||+++|||+|+.+++.|++++++| ++++|++||.|+++..++|
T Consensus 22 ~~g~~~P~f~l~~-~~G--~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~ 96 (171)
T 2yzh_A 22 KVGDRAPEAVVVT-KDL--QEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFAQKRF 96 (171)
T ss_dssp CTTSBCCCEEEEE-TTS--CEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHH
T ss_pred CCCCcCCceEEEC-CCC--CEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHHHHHH
Confidence 3899999999999 888 6999999999999999999999999999999999999999 6999999999999889999
Q ss_pred hhccccCCCCCCc-ceeeecC-CChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecCC-CCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDM-AIPILSD-KSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITINDL-PVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D-~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~~~il~~l~ 509 (547)
.+++ ++ +||++.| ++.++ +.|++.... .+...|++||||++|+|++.+.++. ....+.+++++.|+
T Consensus 97 ~~~~-------~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~ 168 (171)
T 2yzh_A 97 CESF-------NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVK 168 (171)
T ss_dssp HHHT-------TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHH
T ss_pred HHHc-------CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHH
Confidence 9876 88 8999999 78889 999997543 2345799999999999999997643 34557899999988
Q ss_pred hh
Q psy224 510 AF 511 (547)
Q Consensus 510 ~l 511 (547)
++
T Consensus 169 ~l 170 (171)
T 2yzh_A 169 EL 170 (171)
T ss_dssp HC
T ss_pred hh
Confidence 65
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=199.99 Aligned_cols=142 Identities=18% Similarity=0.272 Sum_probs=122.2
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccC-CCCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHhhCCcE-EEEEeCCChh
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEFKKINTQ-VIACSTDSHF 430 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~~-vi~is~d~~~ 430 (547)
.+|+++|+|++++ . +| .+++++++ ++||++||+|||++|||+|+. |+|.|++++++|+++|++ |++||.|+++
T Consensus 27 ~vG~~aPdf~l~~-~~~~G-~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~ 104 (184)
T 3uma_A 27 AVGDKLPNATFKE-KTADG-PVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLH 104 (184)
T ss_dssp CTTCBCCCCEEEE-EETTE-EEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHH
T ss_pred CCCCCCCCcEeec-ccCCC-ceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHH
Confidence 4999999999998 6 55 15899999 799988899888999999999 899999999999999999 9999999999
Q ss_pred hHHHHhhccccCCCCCCcc--eeeecCCChHHHHHhCCcccC--CC---cceeEEEEEcCCCcEEEEEecCCCCC---CC
Q psy224 431 SHLAWCNIPRNKGGLGDMA--IPILSDKSMSIARSYGVLNEE--TG---IPYRGLFIIDDKQNLRQITINDLPVG---RS 500 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~~~v~~~~--~g---~~~p~~~lid~~G~v~~~~~~~~~~~---~~ 500 (547)
..++|.+++ +++ ||+++|++++++++||+..+. .| ...|++|||| +|+|++.++++.+.. .+
T Consensus 105 ~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~~~~~~ 176 (184)
T 3uma_A 105 VMGAWATHS-------GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPGQATASG 176 (184)
T ss_dssp HHHHHHHHH-------TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTTCCSTTS
T ss_pred HHHHHHHHh-------CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCCCCCcCCC
Confidence 999999987 788 999999999999999998542 12 2468899997 999999998875432 35
Q ss_pred HHHHHHH
Q psy224 501 VDETLRL 507 (547)
Q Consensus 501 ~~~il~~ 507 (547)
++++|+.
T Consensus 177 ~~~vL~~ 183 (184)
T 3uma_A 177 AAAMLEL 183 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6666654
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=194.93 Aligned_cols=146 Identities=16% Similarity=0.290 Sum_probs=124.1
Q ss_pred hccCCCCCCeeeccccC-------CceeeEeccCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHhhCCc-EEEEE
Q psy224 355 YALEKPAPEFEGQAVVN-------GQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEFKKINT-QVIAC 424 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~-------G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~-~vi~i 424 (547)
..+|+++|++++..+.. |+.++++++++ +||++||+|||++|||+|+. |++.|++.+++|+++|+ +|++|
T Consensus 10 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigI 89 (176)
T 4f82_A 10 IQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCV 89 (176)
T ss_dssp CCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34999999999887445 56688999998 99999999999999999999 99999999999999999 99999
Q ss_pred eCCChhhHHHHhhccccCCCCCCcc--eeeecCCChHHHHHhCCcccC--CCc---ceeEEEEEcCCCcEEEEEecCCC-
Q psy224 425 STDSHFSHLAWCNIPRNKGGLGDMA--IPILSDKSMSIARSYGVLNEE--TGI---PYRGLFIIDDKQNLRQITINDLP- 496 (547)
Q Consensus 425 s~d~~~~~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~~~v~~~~--~g~---~~p~~~lid~~G~v~~~~~~~~~- 496 (547)
|+|+++.+++|.++. +++ ||+++|++.+++++||+..++ .|+ ..|++||| ++|+|++.++++..
T Consensus 90 S~D~~~~~~~f~~~~-------~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~~~~ 161 (176)
T 4f82_A 90 SVNDAFVMGAWGRDL-------HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEAPGK 161 (176)
T ss_dssp ESSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECCTTC
T ss_pred eCCCHHHHHHHHHHh-------CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcCCCC
Confidence 999999999999986 777 999999999999999998654 232 45899999 99999999987632
Q ss_pred -CCCCHHHHHHHH
Q psy224 497 -VGRSVDETLRLV 508 (547)
Q Consensus 497 -~~~~~~~il~~l 508 (547)
...+.+++|+.|
T Consensus 162 ~~~~~a~~vL~~L 174 (176)
T 4f82_A 162 FEVSDAASVLATL 174 (176)
T ss_dssp CSSSSHHHHHHTC
T ss_pred cchhhHHHHHHHh
Confidence 122455555543
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=203.51 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=131.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST-------- 426 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~-------- 426 (547)
.+|+++|+|++.+ .+| +.+++++++|| ++||+|| ++|||+|+.++|.|++++++|+++|++|++|+.
T Consensus 33 ~~G~~aP~f~l~~-~~G--~~v~l~~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~ 108 (218)
T 3u5r_E 33 TLGTRAADFVLPD-AGG--NLFTLAEFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPE 108 (218)
T ss_dssp CTTCBCCCCCEEC-TTC--CEECGGGGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGG
T ss_pred CCCCcCCCcEeEC-CCC--CEEeHHHhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccc
Confidence 3899999999999 899 69999999999 4999999 999999999999999999999999999999999
Q ss_pred CChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC-----CCCCH
Q psy224 427 DSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP-----VGRSV 501 (547)
Q Consensus 427 d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~-----~~~~~ 501 (547)
|+++..++|.+++ +++||++.|.+.++++.|++. ..|++||||++|+|++....+.. .....
T Consensus 109 d~~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~ 175 (218)
T 3u5r_E 109 ETLERVGAEVKAY-------GYGFPYLKDASQSVAKAYGAA------CTPDFFLYDRERRLVYHGQFDDARPGNGKDVTG 175 (218)
T ss_dssp GSHHHHHHHHHHH-------TCCSCEEECTTCHHHHHHTCC------EESEEEEECTTCBEEEEECSSSCCTTSCCCCCC
T ss_pred CCHHHHHHHHHHh-------CCCccEEECCccHHHHHcCCC------CCCeEEEECCCCcEEEeccccccccccccccCH
Confidence 5667788888876 899999999999999999998 48999999999999987632211 11234
Q ss_pred HHHHHHHHhhH------hhhhcCccccCCccCCCc
Q psy224 502 DETLRLVQAFQ------FVAEHGEVCPAGWKPGSK 530 (547)
Q Consensus 502 ~~il~~l~~l~------~~~~~~~~~~~~w~~~~~ 530 (547)
+++.+.|+++. ..+...++|+++|+++.+
T Consensus 176 ~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~~~ 210 (218)
T 3u5r_E 176 ADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAGNE 210 (218)
T ss_dssp HHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC--
T ss_pred HHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCCCC
Confidence 56666666543 234457899999997744
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-24 Score=213.55 Aligned_cols=158 Identities=23% Similarity=0.303 Sum_probs=136.3
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
++|+|+|++ .+| ++++|+||+||++||+|||+.|||+|+.|++.|++. ..++++|++||.|+++.+++|.+++
T Consensus 3 k~p~F~l~~-~~G--~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~~~~~~v~gis~D~~~~~~~f~~~~ 75 (322)
T 4eo3_A 3 RVKHFELLT-DEG--KTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE----NFEKAQVVGISRDSVEALKRFKEKN 75 (322)
T ss_dssp BCCCCEEEE-TTS--CEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS----CCTTEEEEEEESCCHHHHHHHHHHH
T ss_pred CCCCcEEEC-CCc--CEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH----hhCCCEEEEEeCCCHHHHHHHHHhh
Confidence 689999999 999 699999999999999999999999999999988652 3358999999999999999999987
Q ss_pred ccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhhhcCc
Q psy224 440 RNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGE 519 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~~~~ 519 (547)
+++||+|+|+++++++.||+... +...|++||||++|+|++.+.+ ....++++++|+.|++++. ...+.
T Consensus 76 -------~l~fp~l~D~~~~v~~~ygv~~~--~~~~r~tfiId~~G~i~~~~~~-v~~~~h~~~~l~~~~~~~~-~~~~~ 144 (322)
T 4eo3_A 76 -------DLKVTLLSDPEGILHEFFNVLEN--GKTVRSTFLIDRWGFVRKEWRR-VKVEGHVQEVKEALDRLIE-EDLSL 144 (322)
T ss_dssp -------TCCSEEEECTTCHHHHHTTCEET--TEECCEEEEECTTSBEEEEEES-CCSTTHHHHHHHHHHHHHH-HHTSC
T ss_pred -------CCceEEEEcCchHHHHhcCCCCC--CcCccEEEEECCCCEEEEEEeC-CCccccHHHHHHHHhhhch-hhhHH
Confidence 99999999999999999999742 3467999999999999999964 4566689999999999984 45666
Q ss_pred cccCCccCCCcccccC
Q psy224 520 VCPAGWKPGSKTMKAD 535 (547)
Q Consensus 520 ~~~~~w~~~~~~~~~~ 535 (547)
....+|----+.+.+.
T Consensus 145 ~~~I~~RRSiR~F~~~ 160 (322)
T 4eo3_A 145 NKHIEWRRARRALKKD 160 (322)
T ss_dssp CHHHHHCCCCCCBCCC
T ss_pred HHHHHhhhccCCcCcc
Confidence 6666666666666654
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-24 Score=206.18 Aligned_cols=149 Identities=18% Similarity=0.348 Sum_probs=129.8
Q ss_pred ccCCCCCCeeeccccCCceeeEeccC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHhhCCc-EEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEFKKINT-QVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~~-~vi~is~d~~~~~ 432 (547)
.+|+++|+|++++..+|+.+.+++++ ++||++||+|||++|||+|+ .++|.|++++++|+++|+ +|++||.|+++.+
T Consensus 4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~ 83 (241)
T 1nm3_A 4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVM 83 (241)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHH
T ss_pred cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHH
Confidence 38999999999983367323899999 89999999999999999999 999999999999999999 9999999999999
Q ss_pred HHHhhccccCCCCCCcc-eeeecCCChHHHHHhCCcccCC--Cc---ceeEEEEEcCCCcEEEEEecCCCCC-----CCH
Q psy224 433 LAWCNIPRNKGGLGDMA-IPILSDKSMSIARSYGVLNEET--GI---PYRGLFIIDDKQNLRQITINDLPVG-----RSV 501 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~-fp~l~D~~~~~~~~~~v~~~~~--g~---~~p~~~lid~~G~v~~~~~~~~~~~-----~~~ 501 (547)
++|.+++ +++ ||+++|++++++++||+..... |. ..|++||| ++|+|++.+.++.+.+ .++
T Consensus 84 ~~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~~~~~ 155 (241)
T 1nm3_A 84 NAWKEDE-------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFKVSDA 155 (241)
T ss_dssp HHHHHHT-------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCSSSSH
T ss_pred HHHHHhc-------CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCccceecCH
Confidence 9999876 776 9999999999999999975332 22 46999999 9999999998876654 589
Q ss_pred HHHHHHHHhhH
Q psy224 502 DETLRLVQAFQ 512 (547)
Q Consensus 502 ~~il~~l~~l~ 512 (547)
+++++.|++.+
T Consensus 156 ~~il~~l~~~~ 166 (241)
T 1nm3_A 156 DTMLKYLAPQH 166 (241)
T ss_dssp HHHHHHHCTTS
T ss_pred HHHHHHhhhhc
Confidence 99999988653
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=195.78 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=131.0
Q ss_pred ccCCCCCCeeec-cccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC-------
Q psy224 356 ALEKPAPEFEGQ-AVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST------- 426 (547)
Q Consensus 356 ~~g~~~p~~~l~-~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~------- 426 (547)
.+|+.+|+|++. + .+| +.+++++++|| ++||+|| ++|||+|..+++.|++++++|+++++++++|+.
T Consensus 19 ~~g~~~p~f~l~~~-~~G--~~~~l~~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~ 94 (196)
T 2ywi_A 19 PLGKQAPPFALTNV-IDG--NVVRLEDVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYP 94 (196)
T ss_dssp CTTCBCCCCEEEET-TTC--CEEEHHHHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCG
T ss_pred CcCCcCCceeeeec-CCC--CEEeHHHhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccc
Confidence 389999999999 8 888 69999999998 4999999 999999999999999999999998999999999
Q ss_pred -CChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC-----CCCCC
Q psy224 427 -DSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL-----PVGRS 500 (547)
Q Consensus 427 -d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~-----~~~~~ 500 (547)
|+.+..++|.+++ +++||++.|.+.++++.|++. ..|++||||++|+|++.+.... ....+
T Consensus 95 ~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~ 161 (196)
T 2ywi_A 95 EDSPENMKKVAEEL-------GYPFPYLYDETQEVAKAYDAA------CTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVT 161 (196)
T ss_dssp GGSHHHHHHHHHHH-------TCCSCEEECSSCHHHHHHTCC------EESEEEEEETTCBEEEEECSSSCCTTTCCCCC
T ss_pred ccCHHHHHHHHHHc-------CCCceEEECCchHHHHHhCCC------CCCeEEEEcCCCeEEEccccCcccccccCccC
Confidence 4567778888876 899999999999999999987 5899999999999999864221 11124
Q ss_pred HHHHHHHHHhhH------hhhhcCccccCCccCCC
Q psy224 501 VDETLRLVQAFQ------FVAEHGEVCPAGWKPGS 529 (547)
Q Consensus 501 ~~~il~~l~~l~------~~~~~~~~~~~~w~~~~ 529 (547)
.+++.+.|+++- ..+...++||++|++++
T Consensus 162 ~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~~ 196 (196)
T 2ywi_A 162 GESIRAALDALLEGRPVPEKQKPSIGCSIKWKPSA 196 (196)
T ss_dssp CHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccCC
Confidence 456666665543 33445889999999874
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=193.43 Aligned_cols=154 Identities=19% Similarity=0.307 Sum_probs=127.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--------C
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--------D 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--------d 427 (547)
.+|+.+|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|++++++|+++ +++++|+. |
T Consensus 8 ~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d 82 (188)
T 2cvb_A 8 PLESPLIDAELPD-PRG--GRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPED 82 (188)
T ss_dssp CTTCBCCCCEEEC-TTS--CEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGG
T ss_pred CCCCCCCCceeec-CCC--CEEeHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCcccccccc
Confidence 3899999999999 889 699999999999999999 999999999999999999999987 99999998 4
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC------CCCH
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV------GRSV 501 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~------~~~~ 501 (547)
+.+..++|.+++ +++||++.|.+.++++.|++. ..|++||||++|+|++.. ..+. ..+.
T Consensus 83 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~g--~~~~~~~~~g~~~~ 147 (188)
T 2cvb_A 83 APEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYHG--RVNDNPKDPSKVQS 147 (188)
T ss_dssp SHHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEEE--CSSSCTTCGGGCCC
T ss_pred CHHHHHHHHHHh-------CCCceEEECCcchHHHHcCCC------CCCeEEEECCCCcEEEEE--ecCCccccccccCH
Confidence 567778888876 899999999999999999988 589999999999999883 2210 0123
Q ss_pred HHHHHHHHhhH------hhhhcCccccCCccCCC
Q psy224 502 DETLRLVQAFQ------FVAEHGEVCPAGWKPGS 529 (547)
Q Consensus 502 ~~il~~l~~l~------~~~~~~~~~~~~w~~~~ 529 (547)
+++.+.|+++. ..+...++|+++|++++
T Consensus 148 ~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~ 181 (188)
T 2cvb_A 148 HDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN 181 (188)
T ss_dssp CHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred HHHHHHHHHHHcCCCCCcccCCCCceEEEecCCC
Confidence 34444444433 23445789999998664
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-23 Score=186.39 Aligned_cols=144 Identities=20% Similarity=0.368 Sum_probs=125.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCC-CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF-TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~-cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++| ||+|+.++|.|++++++| .++++++|+.|+++..++
T Consensus 19 ~~G~~~p~f~l~~-~~G--~~~~l~~~~gk~~vl~F~-~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~~~~ 92 (167)
T 2jsy_A 19 KVGDQAPDFTVLT-NSL--EEKSLADMKGKVTIISVI-PSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFAQAR 92 (167)
T ss_dssp CTTSCCCCCEEEB-TTC--CEEEHHHHTTSCEEEEEC-SCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGGTSC
T ss_pred CCCCcCCceEEEC-CCC--CEeeHHHhCCCeEEEEEe-cCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHHHHH
Confidence 3899999999999 889 699999999999999999 887 999999999999999999 699999999998877777
Q ss_pred HhhccccCCCCCCc-ceeeecC-CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC-CCCCCHHHHHHHHHhh
Q psy224 435 WCNIPRNKGGLGDM-AIPILSD-KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL-PVGRSVDETLRLVQAF 511 (547)
Q Consensus 435 ~~~~~~~~~~~~~~-~fp~l~D-~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~~~il~~l~~l 511 (547)
|.+++ ++ +||++.| .+.++++.|++.....+...|++||||++|+|++.+.+.. ....+.+++++.|+++
T Consensus 93 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 93 WCGAN-------GIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp CGGGS-------SCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred HHHhc-------CCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 77765 88 9999999 8899999999986443444699999999999999997653 3344678999998876
Q ss_pred H
Q psy224 512 Q 512 (547)
Q Consensus 512 ~ 512 (547)
.
T Consensus 166 l 166 (167)
T 2jsy_A 166 V 166 (167)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=188.36 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=120.7
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcE-EEEEeCCChhhH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQ-VIACSTDSHFSH 432 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~-vi~is~d~~~~~ 432 (547)
..+|+++|+|++.+ +|.++.++++++ +||++||+|||+.|||+|+.|++.+++.+++|+++|++ |++||+|+++.+
T Consensus 14 ~~vGd~aPdf~l~~--~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~ 91 (171)
T 2xhf_A 14 IKVGDIIPDVLVYE--DVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVM 91 (171)
T ss_dssp CCTTCBCCCCEEEC--SSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHH
T ss_pred ccCcCCCCCeEEec--CCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHH
Confidence 34999999999985 331258999995 99999999999999999999999999999999999996 999999999999
Q ss_pred HHHhhccccCCCCCCc--ceeeecCCChHHHHHhCCcccCC-----CcceeEEEEEcCCCcEEEEEecCCCC---CCCHH
Q psy224 433 LAWCNIPRNKGGLGDM--AIPILSDKSMSIARSYGVLNEET-----GIPYRGLFIIDDKQNLRQITINDLPV---GRSVD 502 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~--~fp~l~D~~~~~~~~~~v~~~~~-----g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~ 502 (547)
++|.++. ++ +||+|+|++.+++++||+..+.. ....|.+|||| +|+|++.++.+.+. ..+.+
T Consensus 92 ~~w~~~~-------~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~~s~a~ 163 (171)
T 2xhf_A 92 AAWGKTV-------DPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPDITGLACLLSI 163 (171)
T ss_dssp HHHHHHH-------CTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTSCSHHHHHHHH
T ss_pred HHHHHhc-------CCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCCCCcccCCCHH
Confidence 9999987 56 89999999999999999986542 13579999999 99999999866543 12356
Q ss_pred HHHHHHH
Q psy224 503 ETLRLVQ 509 (547)
Q Consensus 503 ~il~~l~ 509 (547)
++|+.|+
T Consensus 164 ~vL~~~~ 170 (171)
T 2xhf_A 164 QRQKENK 170 (171)
T ss_dssp HHC----
T ss_pred HHHHHhc
Confidence 6665554
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-23 Score=189.10 Aligned_cols=144 Identities=19% Similarity=0.314 Sum_probs=116.7
Q ss_pred hccCCCCCCeeecccc----CC---ceeeEeccCC-CCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHhhCCcE-EEEE
Q psy224 355 YALEKPAPEFEGQAVV----NG---QFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTE-IIAFSDRAEEFKKINTQ-VIAC 424 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~----~G---~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~-vi~i 424 (547)
..+|+++|+|++++ . +| +++.++++++ +||++||+|||++|||+|+.| +|.|++++++|+++|++ |++|
T Consensus 7 ~~~g~~aP~f~l~~-~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~I 85 (171)
T 2pwj_A 7 TDILSAASNVSLQK-ARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICV 85 (171)
T ss_dssp ---CCCSSSBCCCS-CEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEE
T ss_pred ccccCcCCCeEEec-ccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34788999999998 5 34 1258999997 998666666669999999999 99999999999999999 9999
Q ss_pred eCCChhhHHHHhhccccCCCCCCc--ceeeecCCChHHHHHhCCcccCC----C-cceeEEEEEcCCCcEEEEEecCCCC
Q psy224 425 STDSHFSHLAWCNIPRNKGGLGDM--AIPILSDKSMSIARSYGVLNEET----G-IPYRGLFIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 425 s~d~~~~~~~~~~~~~~~~~~~~~--~fp~l~D~~~~~~~~~~v~~~~~----g-~~~p~~~lid~~G~v~~~~~~~~~~ 497 (547)
|.|+++..++|.+++ ++ +||+++|++++++++||+..... | ...|++|+|| +|+|++.+++..+.
T Consensus 86 s~d~~~~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~ 157 (171)
T 2pwj_A 86 AINDPYTVNAWAEKI-------QAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEESPS 157 (171)
T ss_dssp ESSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTT
T ss_pred eCCCHHHHHHHHHHh-------CCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecCCC
Confidence 999999999999876 64 89999999999999999985321 1 1257899999 99999999887654
Q ss_pred C---CCHHHHHHH
Q psy224 498 G---RSVDETLRL 507 (547)
Q Consensus 498 ~---~~~~~il~~ 507 (547)
+ .+.+++|+.
T Consensus 158 ~~~~~~~~~il~~ 170 (171)
T 2pwj_A 158 DVKVSGAETILGQ 170 (171)
T ss_dssp CCSSSSHHHHHHH
T ss_pred CCcccCHHHHHhc
Confidence 3 356666654
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=189.97 Aligned_cols=140 Identities=23% Similarity=0.303 Sum_probs=118.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCC--eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ--YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk--~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
.+|+.+|+|++.+ .+| +++++++++|| ++||+||+++|||+|+.++|.|++++++|++++ +|++||.|+++.++
T Consensus 8 ~~G~~~P~f~l~~-~~G--~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~ 83 (159)
T 2a4v_A 8 EIGDPIPDLSLLN-EDN--DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQK 83 (159)
T ss_dssp CTTCBCCSCEEEC-TTS--CEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHH
T ss_pred CCCCCCCCeEEEC-CCC--CEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHH
Confidence 3899999999999 888 69999999886 899999989999999999999999999999989 99999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccC-CCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE-TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~-~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+|.+++ +++||++.|.+.++++.||+.... .+ ..|++||| ++|+|++.+.+..+.. +.+++++.|+
T Consensus 84 ~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~p~~g-~~~~~~li-~~G~i~~~~~g~~~~~-~~~~~~~~l~ 150 (159)
T 2a4v_A 84 KFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLSG-SIRSHFIF-VDGKLKFKRVKISPEV-SVNDAKKEVL 150 (159)
T ss_dssp HHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSSSC-BCCEEEEE-ETTEEEEEEESCCHHH-HHHHHHHHHH
T ss_pred HHHHHh-------CCCceEEECCccHHHHHhCCcccccCC-ccceEEEE-cCCEEEEEEccCCccc-cHHHHHHHHH
Confidence 999887 899999999999999999997422 12 25699999 9999999997654322 3344444433
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=183.57 Aligned_cols=143 Identities=23% Similarity=0.364 Sum_probs=119.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCC-CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF-TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~-cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++| ||+|+.++|.|++++++ .+++|++|+.|+++..++
T Consensus 19 ~~G~~~P~f~l~~-~~G--~~v~l~~~~gk~vvl~F~-~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D~~~~~~~ 91 (175)
T 1xvq_A 19 AVGSPAPAFTLTG-GDL--GVISSDQFRGKSVLLNIF-PSVDTPVCATSVRTFDERAAA---SGATVLCVSKDLPFAQKR 91 (175)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSCEEEEEC-SCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESSCHHHHTT
T ss_pred CcCCcCCCeEEEC-CCC--CEEeHHHcCCCEEEEEEE-eCCCCchHHHHHHHHHHHHhh---cCCEEEEEECCCHHHHHH
Confidence 3899999999999 888 699999999999999999 676 99999999999999988 689999999999888877
Q ss_pred HhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEec-CCCCCCCHHHHHHHHH
Q psy224 435 WCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITIN-DLPVGRSVDETLRLVQ 509 (547)
Q Consensus 435 ~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~-~~~~~~~~~~il~~l~ 509 (547)
|.+++ ++ +||++.|.+.++++.|++.... .+...|++||||++|+|++.+.+ ......+++++++.++
T Consensus 92 ~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~ 164 (175)
T 1xvq_A 92 FCGAE-------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG 164 (175)
T ss_dssp CC-------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred HHHHc-------CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHH
Confidence 77765 88 8999999999999999997532 23445999999999999999974 4445557899988877
Q ss_pred hhH
Q psy224 510 AFQ 512 (547)
Q Consensus 510 ~l~ 512 (547)
+-.
T Consensus 165 ~~~ 167 (175)
T 1xvq_A 165 ATS 167 (175)
T ss_dssp HTC
T ss_pred hhc
Confidence 543
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=186.39 Aligned_cols=147 Identities=17% Similarity=0.275 Sum_probs=125.2
Q ss_pred cCCCCCCeeeccc-c---------CC--ceeeEeccC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHH-hhCCcE-
Q psy224 357 LEKPAPEFEGQAV-V---------NG--QFKNIKLSQ-YKGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEF-KKINTQ- 420 (547)
Q Consensus 357 ~g~~~p~~~l~~~-~---------~G--~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~-~~~~~~- 420 (547)
+|+++|+|++++. . +| .++.+++++ ++||++||+|||+.|||+|+ .|++.+++.+++| +++|++
T Consensus 3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~ 82 (182)
T 1xiy_A 3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDD 82 (182)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSE
T ss_pred CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcE
Confidence 7999999999872 1 34 125899998 69999999999999999999 9999999999999 999995
Q ss_pred EEEEeCCChhhHHHHhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCC--C---cceeEEEEEcCCCcEEEEEecC
Q psy224 421 VIACSTDSHFSHLAWCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEET--G---IPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 421 vi~is~d~~~~~~~~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~--g---~~~p~~~lid~~G~v~~~~~~~ 494 (547)
|++||+|+++.+++|.+++ ++ +||+|+|++.+++++||+..+.. | ...|++|||| +|+|++.++.+
T Consensus 83 V~gvS~D~~~~~~~~~~~~-------~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~~ 154 (182)
T 1xiy_A 83 IYCITNNDIYVLKSWFKSM-------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEK 154 (182)
T ss_dssp EEEEESSCHHHHHHHHHHT-------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHc-------CCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEeC
Confidence 9999999999999999986 66 79999999999999999986542 3 2478999999 99999999766
Q ss_pred CCC---------CCCHHHHHHHHHhh
Q psy224 495 LPV---------GRSVDETLRLVQAF 511 (547)
Q Consensus 495 ~~~---------~~~~~~il~~l~~l 511 (547)
... ..+.+++|+.|++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~vL~~L~~~ 180 (182)
T 1xiy_A 155 DKQHNIQTDPYDISTVNNVKEFLKNN 180 (182)
T ss_dssp SCCTTCSSCCCSTTSHHHHHHHHHCC
T ss_pred CcccccccCcccCCCHHHHHHHHHhc
Confidence 332 36899999998753
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=173.57 Aligned_cols=132 Identities=12% Similarity=0.177 Sum_probs=116.3
Q ss_pred ccCCCCCCeeeccccCCceeeEecc--CCCCCeEEEEEEeCCCCCC--cHHHHHHHHHHHHHH-hhCCcEEEEEeCCCh-
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDFTFV--CPTEIIAFSDRAEEF-KKINTQVIACSTDSH- 429 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~--~~~gk~~ll~f~~~~~cp~--C~~~~~~l~~~~~~~-~~~~~~vi~is~d~~- 429 (547)
.+|+++|+|++.+ .+| +.++++ +++||++||+|| ++|||+ |+.++|.|.+++++| +++++++++|+.|..
T Consensus 6 ~~G~~~p~f~l~~-~~g--~~~~l~~~~~~gk~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~ 81 (150)
T 3fw2_A 6 EIGKYAPFFSLPN-AKG--EKITRSSDAFKQKSLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDK 81 (150)
T ss_dssp STTSBCCCCCEEB-TTC--CEECTTSTTTTTSEEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCH
T ss_pred cCCCcCCccEeEC-CCC--CEEecchhhhCCCEEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCH
Confidence 4899999999999 899 699999 999999999999 999999 999999999999999 888999999999864
Q ss_pred hhHHHHhhccccCCCCCCcceeeecCC---ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 430 FSHLAWCNIPRNKGGLGDMAIPILSDK---SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~fp~l~D~---~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
+..++|.+++ +++||++.|. +.++.+.|++. .+|++||||++|+|++.+. +.+++.+
T Consensus 82 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~~ 141 (150)
T 3fw2_A 82 QQWKDAIKRD-------TLDWEQVCDFGGLNSEVAKQYSIY------KIPANILLSSDGKILAKNL-------RGEELKK 141 (150)
T ss_dssp HHHHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHHHH
T ss_pred HHHHHHHHHh-------CCCceEEEcCcccchHHHHHcCCC------ccCeEEEECCCCEEEEccC-------CHHHHHH
Confidence 6777888776 8999999998 57999999998 5899999999999999883 3455555
Q ss_pred HHHhh
Q psy224 507 LVQAF 511 (547)
Q Consensus 507 ~l~~l 511 (547)
.|+++
T Consensus 142 ~l~~l 146 (150)
T 3fw2_A 142 KIENI 146 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=172.48 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=114.7
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHH---HHHHHhhCCcEEEEEeCC-ChhhH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD---RAEEFKKINTQVIACSTD-SHFSH 432 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~---~~~~~~~~~~~vi~is~d-~~~~~ 432 (547)
+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..++|.|.+ ++++|+++++++++|+.| ..+..
T Consensus 3 ~G~~~p~f~l~~-~~g--~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~ 78 (142)
T 3ewl_A 3 AGMKAADFTYVT-VHG--DNSRMSRLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEW 78 (142)
T ss_dssp TTSBCCCCEEEC-TTC--CEEEGGGCCCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHH
T ss_pred CCCcCCCCEEEC-CCC--CEEEhhhcCCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHH
Confidence 799999999999 889 699999999999999999 9999999999999998 999999999999999998 45666
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHH--HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIAR--SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~--~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++|.+++ +++||++.|.+..+.. .|++. .+|++||||++|+|++.. ...+++.+.|++
T Consensus 79 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~-------~~~~~l~~~l~~ 138 (142)
T 3ewl_A 79 ATKAVYM-------PQGWIVGWNKAGDIRTRQLYDIR------ATPTIYLLDGRKRVILKD-------TSMEQLIDYLAT 138 (142)
T ss_dssp HHHHTTS-------CTTCEEEECTTCHHHHTTCSCCC------SSSEEEEECTTCBEEECS-------CCHHHHHHHHHC
T ss_pred HHHHHHc-------CCCcceeeCCccchhhHHHcCCC------CCCeEEEECCCCCEEecC-------CCHHHHHHHHHH
Confidence 7777765 8999999999988877 89987 589999999999998732 246777777766
Q ss_pred hH
Q psy224 511 FQ 512 (547)
Q Consensus 511 l~ 512 (547)
++
T Consensus 139 ~~ 140 (142)
T 3ewl_A 139 QA 140 (142)
T ss_dssp --
T ss_pred Hc
Confidence 54
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-22 Score=178.45 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=118.2
Q ss_pred cCCCCCCeeeccc-cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHhhCCcEEEEEeCC-------
Q psy224 357 LEKPAPEFEGQAV-VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTE-IIAFSDRAEEFKKINTQVIACSTD------- 427 (547)
Q Consensus 357 ~g~~~p~~~l~~~-~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~vi~is~d------- 427 (547)
.|.++|+|++.++ .+| +.+++++++||++||+|| ++|||+|..+ +|.|++++++|+++++++++|+.|
T Consensus 2 ~g~~aP~f~l~~~~~~g--~~~~l~~~~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (158)
T 3eyt_A 2 NAMKAPELQIQQWFNSA--TDLTLADLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAM 78 (158)
T ss_dssp CCEECCCCCEEEEESCS--SCCCTGGGTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGS
T ss_pred CCCcCCCceehhhhcCC--CccCHHHhCCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccC
Confidence 5788999999983 366 699999999999999999 9999999997 999999999999889999999964
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCCh-----HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHH
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKSM-----SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVD 502 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~-----~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~ 502 (547)
+.+..++|.+++ +++||++.|.+. ++++.|++. .+|++||||++|+|++.+.+..+ .+
T Consensus 79 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~~ 141 (158)
T 3eyt_A 79 TPISLKAFLHEY-------RIKFPVGVDQPGDGAMPRTMAAYQMR------GTPSLLLIDKAGDLRAHHFGDVS----EL 141 (158)
T ss_dssp CHHHHHHHHHHT-------TCCSCEEEECCCSSSSCHHHHHTTCC------SSSEEEEECTTSEEEEEEESCCC----HH
T ss_pred CHHHHHHHHHHc-------CCCceEEEcCccchhhHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCCCC----HH
Confidence 667788888876 899999999887 799999997 58999999999999999977653 45
Q ss_pred HHHHHHHhhH
Q psy224 503 ETLRLVQAFQ 512 (547)
Q Consensus 503 ~il~~l~~l~ 512 (547)
++.+.|+++-
T Consensus 142 ~l~~~i~~ll 151 (158)
T 3eyt_A 142 LLGAEIATLL 151 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=173.16 Aligned_cols=139 Identities=21% Similarity=0.346 Sum_probs=123.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--hhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--HFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--~~~~~ 433 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|++.++++++|+.|. .+..+
T Consensus 3 ~~G~~~p~~~l~~-~~g--~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~ 78 (154)
T 3kcm_A 3 LEENPAPDFTLNT-LNG--EVVKLSDLKGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVE 78 (154)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHH
T ss_pred CCCCCCCCeEEEc-CCC--CEEehhhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHH
Confidence 4899999999999 888 699999999999999999 99999999999999999999998899999999987 66778
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.+++ +++||++.|.+..+.+.|++. .+|++||||++|+|++.+.+..+. +.+++.+.|+++..
T Consensus 79 ~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~~--~~~~l~~~l~~l~~ 143 (154)
T 3kcm_A 79 EFFRKT-------GFTLPVLLDADKRVGKLYGTT------GVPETFVIDRHGVILKKVVGAMEW--DHPEVIAFLNNELS 143 (154)
T ss_dssp HHHHHH-------CCCCCEEECTTCHHHHHHTCC------SBCEEEEECTTSBEEEEEESCCCT--TSHHHHHHHHTC--
T ss_pred HHHHHc-------CCCeeEEecCchHHHHHhCCC------CCCeEEEECCCCcEEEEEcCCCcc--ccHHHHHHHHHHHH
Confidence 888876 899999999999999999998 589999999999999999776543 34677777777664
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=175.94 Aligned_cols=143 Identities=17% Similarity=0.212 Sum_probs=119.4
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhhCC--cEEEEEeCC----Ch
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKKIN--TQVIACSTD----SH 429 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~~~--~~vi~is~d----~~ 429 (547)
+|..+|+|++.+ .+| +.+++++++||++||+|| ++||| +|+.+++.|.+++++|++++ ++|++|+.| ++
T Consensus 9 ~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~ 84 (174)
T 1xzo_A 9 LNYEVEPFTFQN-QDG--KNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKP 84 (174)
T ss_dssp CCEECCCCEEEC-TTS--CEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred cccccCCcEEEc-CCC--CEEehhhcCCCEEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCH
Confidence 899999999999 889 699999999999999999 99999 99999999999999999876 999999997 45
Q ss_pred hhHHHHhhccccCCCCCCcce---eeecCCChHHHHHhCCc-----cc-----CCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 430 FSHLAWCNIPRNKGGLGDMAI---PILSDKSMSIARSYGVL-----NE-----ETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~f---p~l~D~~~~~~~~~~v~-----~~-----~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+..++|.+++ +++| +++.|++.++.+.|++. .. ......|++||||++|+|++.+.+..+
T Consensus 85 ~~~~~~~~~~-------~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~ 157 (174)
T 1xzo_A 85 KQLKKFAANY-------PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVEN 157 (174)
T ss_dssp HHHHHHHTTS-------CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSS
T ss_pred HHHHHHHHHc-------CCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCC
Confidence 6777888765 7788 99999888887777641 00 012347999999999999999976653
Q ss_pred CCCCHHHHHHHHHhhH
Q psy224 497 VGRSVDETLRLVQAFQ 512 (547)
Q Consensus 497 ~~~~~~~il~~l~~l~ 512 (547)
.+.+++++.|+++-
T Consensus 158 --~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 158 --TPYDDIISDVKSAS 171 (174)
T ss_dssp --CCHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHH
Confidence 35678888888664
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-22 Score=178.15 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=120.4
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHhhCCcEEEEEeC-------C
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTE-IIAFSDRAEEFKKINTQVIACST-------D 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~vi~is~-------d 427 (547)
+.|.++|+|++.++.+| +.+++++++||++||+|| ++|||+|..+ +|.|++++++|+++++++++|+. +
T Consensus 4 ~~g~~~p~~~~~~~~~g--~~~~l~~~~gk~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 80 (160)
T 3lor_A 4 LDNAPLLELDVQEWVNH--EGLSNEDLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVM 80 (160)
T ss_dssp CTTCCBCCCCEEEESSS--CCCCHHHHTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGS
T ss_pred cCCCcCCCcccccccCC--CccCHHHhCCCEEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccC
Confidence 36889999999987788 699999999999999999 9999999996 99999999999988999999997 5
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCChH------HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCH
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS------IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSV 501 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~------~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~ 501 (547)
+.+..++|.+++ +++||++.|.+.. +++.|++. .+|++||||++|+|++.+.|..+ .
T Consensus 81 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~ 143 (160)
T 3lor_A 81 TPEALKVFIDEF-------GIKFPVAVDMPREGQRIPSTMKKYRLE------GTPSIILADRKGRIRQVQFGQVD----D 143 (160)
T ss_dssp CHHHHHHHHHHT-------TCCSCEEEECCCTTCSSCHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCC----H
T ss_pred CHHHHHHHHHHc-------CCCCcEEECCccccchhhhHHHhcccC------ccceEEEECCCCcEEEEecCcCC----H
Confidence 677888888876 8999999999887 99999997 58999999999999999977653 4
Q ss_pred HHHHHHHHhhH
Q psy224 502 DETLRLVQAFQ 512 (547)
Q Consensus 502 ~~il~~l~~l~ 512 (547)
+++.+.|+++-
T Consensus 144 ~~l~~~i~~ll 154 (160)
T 3lor_A 144 FVLGLLLGSLL 154 (160)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666543
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=171.14 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=112.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHH---HHHHHhhCCcEEEEEeCCCh-hh
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD---RAEEFKKINTQVIACSTDSH-FS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~---~~~~~~~~~~~vi~is~d~~-~~ 431 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++||++|+.++|.|.+ ++++|+++++++++|+.|.. +.
T Consensus 6 ~~G~~ap~f~l~~-~~g--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~ 81 (142)
T 3eur_A 6 RLGTKALNFTYTL-DSG--VKGTLYQFPAEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDE 81 (142)
T ss_dssp CTTSBCCCCEEEE-TTS--CEEETTTCCCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHH
T ss_pred cCCCccCCcEEEc-CCC--CEeeHHHcCCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHH
Confidence 4899999999999 889 699999999999999999 9999999999999999 99999999999999999864 45
Q ss_pred HHHHhhccccCCCCCCcceeeecCCChH--HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKSMS--IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~--~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+++.+++ +++|+.+.|.+.. +.+.|++. .+|++||||++|+|++...+ .+++.+.|+
T Consensus 82 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~-------~~~l~~~l~ 141 (142)
T 3eur_A 82 WKKHRNDF-------AKEWTNGYDKELVIKNKNLYDLR------AIPTLYLLDKNKTVLLKDAT-------LQKVEQYLA 141 (142)
T ss_dssp HHHHGGGS-------CTTSEEEECTTCHHHHTTCSCCT------TCSEEEEECTTCBEEEEEEC-------HHHHHHHHH
T ss_pred HHHHHHhc-------ccccccccCccchhhhhhhcCCC------cCCeEEEECCCCcEEecCCC-------HHHHHHHHh
Confidence 56666655 7899999998755 67889887 58999999999999998852 355555554
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=173.46 Aligned_cols=138 Identities=20% Similarity=0.337 Sum_probs=122.8
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
..+|+.+|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|++.++.+++|+.|. +.++
T Consensus 15 ~~~G~~~p~f~l~~-~~g--~~~~l~~~~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~~~~ 88 (158)
T 3hdc_A 15 VRTGALAPNFKLPT-LSG--ENKSLAQYRGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--RFPE 88 (158)
T ss_dssp CCTTSBCCCCEEEC-TTS--CEEESGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--SCCG
T ss_pred cCCCCcCCCceeEc-CCC--CEEehHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--HHHH
Confidence 34899999999999 888 699999999999999999 99999999999999999999998899999999987 4556
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
|.+++ +++||++.|.+.++.+.|++. .+|++||||++|+|++.+.|..+.. .+++++.+++.+.
T Consensus 89 ~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~~~~--~~~~~~~~~~~~~ 152 (158)
T 3hdc_A 89 KYRRA-------PVSFNFLSDATGQVQQRYGAN------RLPDTFIVDRKGIIRQRVTGGIEWD--APKVVSYLKSLEG 152 (158)
T ss_dssp GGGGC-------CCSCEEEECTTSHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCCTT--SHHHHHHHHTTC-
T ss_pred HHHHc-------CCCceEEECchHHHHHHhCCC------CcceEEEEcCCCCEEEEEeCCCccc--hHHHHHHHHhhcc
Confidence 66654 899999999999999999998 5899999999999999998776544 5888888887764
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=180.77 Aligned_cols=158 Identities=15% Similarity=0.204 Sum_probs=116.7
Q ss_pred ccCCCC--CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhhC---CcEEEEEeCC--
Q psy224 356 ALEKPA--PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKKI---NTQVIACSTD-- 427 (547)
Q Consensus 356 ~~g~~~--p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~---~~~vi~is~d-- 427 (547)
.+|+++ |+|++.+ .+| +.+++++++||++||+|| ++|||+ |+.+++.|++++++|+++ +++|++||.|
T Consensus 14 ~~g~~~~~p~f~l~d-~~G--~~v~l~~~~Gk~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~ 89 (200)
T 2b7k_A 14 GYGKPSLGGPFHLED-MYG--NEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPA 89 (200)
T ss_dssp --CCCCCCCCCEEEE-TTS--CEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTT
T ss_pred ccCCCCcCCCEEEEc-CCC--CEEeHHHcCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCC
Confidence 378885 9999999 889 699999999999999999 999997 999999999999999854 8999999998
Q ss_pred --ChhhHHHHhhccccCCCCCCcceeeecC---CChHHHHHhCCcccCC-----C-----cceeEEEEEcCCCcEEEEEe
Q psy224 428 --SHFSHLAWCNIPRNKGGLGDMAIPILSD---KSMSIARSYGVLNEET-----G-----IPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 428 --~~~~~~~~~~~~~~~~~~~~~~fp~l~D---~~~~~~~~~~v~~~~~-----g-----~~~p~~~lid~~G~v~~~~~ 492 (547)
+++..++|.+++ +.+|+.+.+ ...++++.||+....- + ...|++||||++|+|++.+.
T Consensus 90 ~d~~~~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~ 162 (200)
T 2b7k_A 90 RDSPAVLKEYLSDF-------HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALG 162 (200)
T ss_dssp TCCHHHHHHHHTTS-------CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEEC
T ss_pred CCCHHHHHHHHHHc-------CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeC
Confidence 466777888765 788888764 3478999999873110 0 11358999999999999997
Q ss_pred cCCCCCCCHHHHHHHHHhhHhhhhcCccccCCc
Q psy224 493 NDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGW 525 (547)
Q Consensus 493 ~~~~~~~~~~~il~~l~~l~~~~~~~~~~~~~w 525 (547)
+..+.....+++.+.|+.+.. ...+..|+.+|
T Consensus 163 g~~~~~~~~~~i~~~l~~l~~-~~~~~~~~~~~ 194 (200)
T 2b7k_A 163 RNYDEKTGVDKIVEHVKSYVP-AEQRAKQKEAW 194 (200)
T ss_dssp TTCCTTHHHHHHHHHHHHCCC-C----------
T ss_pred CCCCHHHHHHHHHHHHHHhhh-hhhcchhHHHH
Confidence 666555556677777777664 44577899999
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-21 Score=170.29 Aligned_cols=137 Identities=17% Similarity=0.283 Sum_probs=121.0
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CChhhH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DSHFSH 432 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~~~~~ 432 (547)
..+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|++++++|+++++++++|+. |+.+..
T Consensus 2 ~~~G~~~p~~~l~~-~~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~ 77 (153)
T 2l5o_A 2 SLDSKTAPAFSLPD-LHG--KTVSNADLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESV 77 (153)
T ss_dssp --CCTTCCSCEEEC-TTS--CEEEHHHHTTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHH
T ss_pred CCCCCCCCCcEeec-CCC--CCccHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHH
Confidence 34899999999999 889 699999999999999999 999999999999999999999998999999995 567788
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++|.+++ +++|+++.|.+.++.+.|++. .+|+++|||++|+++..+.+.. +.+++.+.|+++-
T Consensus 78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~ll 140 (153)
T 2l5o_A 78 RQYVKDY-------GLPFTVMYDADKAVGQAFGTQ------VYPTSVLIGKKGEILKTYVGEP----DFGKLYQEIDTAW 140 (153)
T ss_dssp HHHHHHT-------TCCSEEEECSSCHHHHHHTCC------SSSEEEEECSSSCCCEEEESSC----CHHHHHHHHHHHH
T ss_pred HHHHHHc-------CCCceEEcCchHHHHHHcCCC------ccCeEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHH
Confidence 8888876 899999999999999999997 5899999999999999987654 4667777777654
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=170.67 Aligned_cols=135 Identities=20% Similarity=0.351 Sum_probs=120.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-ChhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~~~~~ 435 (547)
+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.| .++..++|
T Consensus 2 ~G~~~p~~~l~~-~~g--~~~~l~~~~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~ 77 (151)
T 2f9s_A 2 EGSDAPNFVLED-TNG--KRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNF 77 (151)
T ss_dssp CCEECCCCEEEC-TTC--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHH
T ss_pred CCCcCCcceeEc-CCC--CEEEHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH
Confidence 688999999999 888 699999999999999999 9999999999999999999999889999999986 45777888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+++ +++||++.|.+.++.+.|++. .+|+++|||++|+++..+.|.. +.+++.+.|+++.
T Consensus 78 ~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ll 137 (151)
T 2f9s_A 78 MKSY-------GVNFPVVLDTDRQVLDAYDVS------PLPTTFLINPEGKVVKVVTGTM----TESMIHDYMNLIK 137 (151)
T ss_dssp HHHH-------TCCSCEEEETTSHHHHHTTCC------SSCEEEEECTTSEEEEEEESCC----CHHHHHHHHHHHS
T ss_pred HHHc-------CCCceEEECCchHHHHhcCCC------CCCeEEEECCCCcEEEEEeCCC----CHHHHHHHHHHHH
Confidence 8876 899999999999999999997 5899999999999999997654 4566777777654
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=171.72 Aligned_cols=132 Identities=14% Similarity=0.197 Sum_probs=112.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhh-HHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFS-HLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~-~~~ 434 (547)
..|+.+|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|+++|+++++|+.|+..+ .++
T Consensus 10 ~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~ 85 (152)
T 2lrt_A 10 IKEASIIDIQLKD-LKG--NTRSLTDLKGKVVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKT 85 (152)
T ss_dssp SCTTCSCCCCEEB-TTS--CEECTTTGGGSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHH
T ss_pred ccCCCCCCeEEEc-CCC--CEEeHHHhCCCEEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHH
Confidence 4788999999999 889 699999999999999999 99999999999999999999999999999999987532 333
Q ss_pred HhhccccCCCCCCcceeeecCCChH---HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMS---IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~---~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.+ .++||++.|.+.. +.+.|++. ..|++||||++|+|++.+.+.. +.++.+..+.+
T Consensus 86 ~~~---------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~e~~~~~~~~ 145 (152)
T 2lrt_A 86 SAD---------NLPWVCVRDANGAYSSYISLYNVT------NLPSVFLVNRNNELSARGENIK----DLDEAIKKLLE 145 (152)
T ss_dssp HHT---------TCSSEEEECSSGGGCHHHHHHTCC------SCSEEEEEETTTEEEEETTTCS----CHHHHHHHHHG
T ss_pred HHh---------CCCceEEECCCCcchHHHHHcCcc------cCceEEEECCCCeEEEecCCHH----HHHHHHHHHHh
Confidence 332 5789999999876 99999998 5899999999999999885443 56666666543
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=171.20 Aligned_cols=119 Identities=17% Similarity=0.262 Sum_probs=109.3
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~ 435 (547)
+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|++++++|+++++++++|+.|. .+..++|
T Consensus 5 ~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~ 80 (152)
T 2lrn_A 5 TGSVAPAITGID-LKG--NSVSLNDFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKA 80 (152)
T ss_dssp TTEECCCCEEEC-SSS--CEEESGGGTTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHH
T ss_pred CCCcCCCceeEc-CCC--CEEeHHHcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHH
Confidence 899999999999 888 699999999999999999 99999999999999999999998899999999984 5666777
Q ss_pred hhccccCCCCCCcceeeecCC---ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 436 CNIPRNKGGLGDMAIPILSDK---SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~---~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
.++. +++||++.|. +.++++.|++. .+|+++|||++|+|++.+.
T Consensus 81 ~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 127 (152)
T 2lrn_A 81 IEED-------KSYWNQVLLQKDDVKDVLESYCIV------GFPHIILVDPEGKIVAKEL 127 (152)
T ss_dssp HHHH-------TCCSEEEEECHHHHHHHHHHTTCC------SSCEEEEECTTSEEEEECC
T ss_pred HHHh-------CCCCeEEecccchhHHHHHHhCCC------cCCeEEEECCCCeEEEeeC
Confidence 7765 8999999998 68999999997 5899999999999999873
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=173.35 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=103.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~ 434 (547)
.+|+.+|+|++ + .+| +.+++++++||++||+|| ++||++|..++|.|++++++|++++++|++|+.|. .+..++
T Consensus 8 ~~G~~~P~f~l-~-~~g--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~ 82 (143)
T 4fo5_A 8 NPGDLAPRIEF-L-GND--AKASFHNQLGRYTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTE 82 (143)
T ss_dssp STTSBCCCCCC---------CCCSCCSSCCEEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHH
T ss_pred CCcccCCceEE-c-CCC--CEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHH
Confidence 38999999999 8 888 699999999999999999 99999999999999999999998899999999994 556777
Q ss_pred HhhccccCCCCCCcce-eeecCCC---hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 435 WCNIPRNKGGLGDMAI-PILSDKS---MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~f-p~l~D~~---~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
+.+++ +++| +.+.|.. .++++.|++. .+|++||||++|+|++.+.
T Consensus 83 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 131 (143)
T 4fo5_A 83 TVKID-------KLDLSTQFHEGLGKESELYKKYDLR------KGFKNFLINDEGVIIAANV 131 (143)
T ss_dssp HHHHH-------TCCGGGEEECTTGGGSHHHHHTTGG------GCCCEEEECTTSBEEEESC
T ss_pred HHHHh-------CCCCceeeecccccchHHHHHcCCC------CCCcEEEECCCCEEEEccC
Confidence 88776 8999 7888874 6899999998 5899999999999998863
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=174.71 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=104.9
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC------
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------ 428 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------ 428 (547)
..+|..+|+|++.+ .+| +++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|+.|.
T Consensus 5 ~~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~ 80 (169)
T 2v1m_A 5 HKSWNSIYEFTVKD-ING--VDVSLEKYRGHVCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEP 80 (169)
T ss_dssp --CCCSGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCC
T ss_pred ccCCcccccceeec-CCC--CCccHHHcCCCEEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCC
Confidence 34899999999999 899 699999999999999999 99999999999999999999999999999999863
Q ss_pred --hhhHHHH-hhccccCCCCCCcceeeec--CCChHHHH-Hh--------CCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 429 --HFSHLAW-CNIPRNKGGLGDMAIPILS--DKSMSIAR-SY--------GVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 429 --~~~~~~~-~~~~~~~~~~~~~~fp~l~--D~~~~~~~-~~--------~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
++..++| .+++ +++||++. |.++...+ .| ++.... ....|++||||++|+|++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~-i~~~P~~~lid~~G~i~~~~~g~ 152 (169)
T 2v1m_A 81 WAEAEIKKFVTEKY-------GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN-IKWNFSKFLVDRQGQPVKRYSPT 152 (169)
T ss_dssp SCHHHHHHHHHHHH-------CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCS-CCSTTCEEEECTTSCEEEEECTT
T ss_pred CCHHHHHHHHHHhc-------CCCCceEEEEeecCccccHHHHHHHhhcCCccCCc-ccccceEEEECCCCCEEEEcCCC
Confidence 4567777 4665 89999996 65544321 23 433100 11358999999999999999766
Q ss_pred CCC
Q psy224 495 LPV 497 (547)
Q Consensus 495 ~~~ 497 (547)
.+.
T Consensus 153 ~~~ 155 (169)
T 2v1m_A 153 TAP 155 (169)
T ss_dssp SCG
T ss_pred CCH
Confidence 543
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=172.35 Aligned_cols=135 Identities=18% Similarity=0.214 Sum_probs=119.9
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-ChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~~~~ 434 (547)
.+|.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.| ..+..++
T Consensus 6 ~~G~~~p~~~l~~-~~g--~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~ 81 (148)
T 3hcz_A 6 LLGKKAPNLYMTD-TTG--TYRYLYDVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLK 81 (148)
T ss_dssp CTTSBCCCCCCBC-TTS--CBCCGGGCCCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHH
T ss_pred CCCCcCCceEEec-CCC--CEEEhHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHH
Confidence 4899999999999 888 699999999999999999 9999999999999999999999989999999998 5577888
Q ss_pred HhhccccCCCCCCcc-eeeecCCChH--HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 435 WCNIPRNKGGLGDMA-IPILSDKSMS--IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~-fp~l~D~~~~--~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
|.+++ +++ |+++.|.+.. +++.|++. .+|+++|||++|++++.+.+. .+++++++.+.++
T Consensus 82 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~~l~~l~~~ 144 (148)
T 3hcz_A 82 FIRSK-------KIGGWLNVRDSKNHTDFKITYDIY------ATPVLYVLDKNKVIIAKRIGY----ENLDDFLVQYEKS 144 (148)
T ss_dssp HHHHH-------TCTTSEEEECTTCCCCHHHHHCCC------SSCEEEEECTTCBEEEESCCG----GGHHHHHHHHHHH
T ss_pred HHHHc-------CCCCceEEeccccchhHHHhcCcC------CCCEEEEECCCCcEEEecCCH----HHHHHHHHHHHHH
Confidence 88876 788 9999999877 99999998 589999999999999988554 3567777766543
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=166.53 Aligned_cols=137 Identities=19% Similarity=0.212 Sum_probs=120.9
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~ 434 (547)
.+|+++|+|++.+ +| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.|. .+...+
T Consensus 4 ~~G~~~P~f~l~~--~g--~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~ 78 (152)
T 3gl3_A 4 DKGDKAPDFALPG--KT--GVVKLSDKTGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMK 78 (152)
T ss_dssp CTTSBCCCCEEEB--SS--SEEEGGGGTTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHH
T ss_pred CCCCcCCceEeeC--CC--CeEeHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHH
Confidence 3899999999998 66 489999999999999999 99999999999999999999999999999999984 566778
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+++ +++||++.|.+.++.+.|++. .+|++||||++|+|++.+.+..+. +.+++.+.|++..
T Consensus 79 ~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~~--~~~~l~~~i~~~~ 141 (152)
T 3gl3_A 79 FLAQV-------PAEFTVAFDPKGQTPRLYGVK------GMPTSFLIDRNGKVLLQHVGFRPA--DKEALEQQILAAL 141 (152)
T ss_dssp HHHHS-------CCCSEEEECTTCHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCTT--THHHHHHHHHHHT
T ss_pred HHHHc-------CCCCceeECCcchhHHHcCCC------CCCeEEEECCCCCEEEEEccCCCc--CHHHHHHHHHHHH
Confidence 88776 899999999999999999997 589999999999999999766432 4577777777654
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=174.82 Aligned_cols=138 Identities=15% Similarity=0.259 Sum_probs=119.4
Q ss_pred cCCCCCCeeecccc--CCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCc------EEEEEeCCC
Q psy224 357 LEKPAPEFEGQAVV--NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT------QVIACSTDS 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~--~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~------~vi~is~d~ 428 (547)
.|.++|+|++.+ . +| +.+++++++||++||+|| ++|||+|+.+++.|++++++|+++++ ++++|+.|.
T Consensus 33 ~g~~~p~f~l~~-~~~~g--~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~ 108 (183)
T 3lwa_A 33 DRQQLPDIGGDS-LMEEG--TQINLSDFENQVVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD 108 (183)
T ss_dssp GCCCCCCCEEEB-SSSTT--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC
T ss_pred cCCCCCceeccc-cccCC--cEecHHHhCCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC
Confidence 789999999999 7 88 699999999999999999 99999999999999999999999999 999999987
Q ss_pred --hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 429 --HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 429 --~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++..++|.+++ +++||++.|.+..+.+.|+... ...+|++||||++|+|++.+.+.. +.+++.+
T Consensus 109 ~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~ 174 (183)
T 3lwa_A 109 YSRDIAQDFVTDN-------GLDYPSIYDPPFMTAASLGGVP---ASVIPTTIVLDKQHRPAAVFLREV----TSKDVLD 174 (183)
T ss_dssp CCHHHHHHHHHHT-------TCCSCEEECTTCGGGGGTTTCC---TTCCSEEEEECTTSCEEEEECSCC----CHHHHHH
T ss_pred CCHHHHHHHHHHc-------CCCccEEECCcchHHHHhccCC---CCCCCeEEEECCCCcEEEEEcCCC----CHHHHHH
Confidence 77788888876 8999999999999999987321 125899999999999999996654 4567777
Q ss_pred HHHhhH
Q psy224 507 LVQAFQ 512 (547)
Q Consensus 507 ~l~~l~ 512 (547)
.|+++-
T Consensus 175 ~l~~ll 180 (183)
T 3lwa_A 175 VALPLV 180 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-21 Score=175.36 Aligned_cols=148 Identities=12% Similarity=0.163 Sum_probs=115.0
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-------
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD------- 427 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d------- 427 (547)
...|..+|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|
T Consensus 12 ~~~~~~~p~f~l~d-~~G--~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~ 87 (180)
T 3kij_A 12 KPKINSFYAFEVKD-AKG--RTVSLEKYKGKVSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEP 87 (180)
T ss_dssp CCCCCCGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCC
T ss_pred cCCcCcccceEEec-CCC--CEecHHHcCCCEEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCC
Confidence 34899999999999 899 699999999999999999 9999999999999999999999999999999975
Q ss_pred -ChhhHHHHhhc-cccCCCCCCcceeeecCCC--hH-HHHHhCCcccCCCcceeE----EEEEcCCCcEEEEEecCCCCC
Q psy224 428 -SHFSHLAWCNI-PRNKGGLGDMAIPILSDKS--MS-IARSYGVLNEETGIPYRG----LFIIDDKQNLRQITINDLPVG 498 (547)
Q Consensus 428 -~~~~~~~~~~~-~~~~~~~~~~~fp~l~D~~--~~-~~~~~~v~~~~~g~~~p~----~~lid~~G~v~~~~~~~~~~~ 498 (547)
+++..++|.++ + +++||++.+.+ .. ....|+......+ ..|+ +||||++|+|+..+.+..+..
T Consensus 88 d~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~p~~~~~~~lid~~G~i~~~~~g~~~~~ 159 (180)
T 3kij_A 88 RPSKEVESFARKNY-------GVTFPIFHKIKILGSEGEPAFRFLVDSSK-KEPRWNFWKYLVNPEGQVVKFWRPEEPIE 159 (180)
T ss_dssp SCHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTCCHHHHHHHHHHT-CCCSSTTCEEEECTTSCEEEEECTTCCGG
T ss_pred CCHHHHHHHHHHhc-------CCCCceeeeeeccCccccHHHHHHHhcCC-CCccccceEEEECCCCCEEEEECCCCCHH
Confidence 56777888887 6 89999976422 11 1011111100000 2566 999999999999998777766
Q ss_pred CCHHHHHHHHHhhHhh
Q psy224 499 RSVDETLRLVQAFQFV 514 (547)
Q Consensus 499 ~~~~~il~~l~~l~~~ 514 (547)
...+++.+.|+++...
T Consensus 160 ~l~~~i~~lL~~~~~~ 175 (180)
T 3kij_A 160 VIRPDIAALVRQVIIK 175 (180)
T ss_dssp GTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5566666777766543
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-21 Score=174.89 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=116.1
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC-CChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST-DSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~-d~~~~~~ 433 (547)
..+|+++|+|++.+ .+|+.+.+++++++||++||+|| ++|||+|..++|.|++++++ ++++++|+. |+.+..+
T Consensus 30 ~~~G~~~P~f~l~~-~~g~~~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~~~~~~ 103 (176)
T 3kh7_A 30 ALIGKPFPAFDLPS-VQDPARRLTEADLKGKPALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDDNAAAI 103 (176)
T ss_dssp TTTTSBCCCCEEEB-SSCTTSEEEGGGGCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCCHHHHH
T ss_pred cccCCcCCCcEecc-cCCCCceecHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCCHHHHH
Confidence 45999999999999 77743589999999999999999 99999999999999998875 899999995 5678888
Q ss_pred HHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 434 AWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|.+++ +++|+ ++.|.+.++++.|++. .+|++||||++|+|++.+.+..+.....+.+.+.|++++
T Consensus 104 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 104 KWLNEL-------HNPYLLSISDADGTLGLDLGVY------GAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp HHHHHT-------TCCCSEEEEETTCHHHHHHTCC------SSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred HHHHHc-------CCCCceEEECCcchHHHHcCCC------CCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 888876 88998 5889999999999998 589999999999999999877654322333334444444
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-21 Score=176.73 Aligned_cols=135 Identities=14% Similarity=0.152 Sum_probs=108.1
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
.+|+++|+|++.+ .+| +++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++|
T Consensus 24 ~~g~~~p~f~l~~-~~G--~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~ 99 (181)
T 2p31_A 24 QQEQDFYDFKAVN-IRG--KLVSLEKYRGSVSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPD 99 (181)
T ss_dssp ---CCGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred CcCCccCceEeec-CCC--CEecHHHcCCCEEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCC
Confidence 3899999999999 889 699999999999999999 9999999999999999999999999999999986
Q ss_pred ChhhHHHHhhc-cccCCCCCCcceeeecC--CChHHHH---HhCCcccCCCccee-------EEEEEcCCCcEEEEEecC
Q psy224 428 SHFSHLAWCNI-PRNKGGLGDMAIPILSD--KSMSIAR---SYGVLNEETGIPYR-------GLFIIDDKQNLRQITIND 494 (547)
Q Consensus 428 ~~~~~~~~~~~-~~~~~~~~~~~fp~l~D--~~~~~~~---~~~v~~~~~g~~~p-------~~~lid~~G~v~~~~~~~ 494 (547)
+++..++|.++ + +++||++.| .++.... .|++. ..| ++||||++|+|++.+.+.
T Consensus 100 ~~~~~~~~~~~~~-------~~~~p~~~~~d~~g~~~~~~~~~~~~------~~P~~~~~~~~~~lid~~G~i~~~~~g~ 166 (181)
T 2p31_A 100 SNKEIESFARRTY-------SVSFPMFSKIAVTGTGAHPAFKYLAQ------TSGKEPTWNFWKYLVAPDGKVVGAWDPT 166 (181)
T ss_dssp CHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTSCHHHHHHHH------HHSCCCCSTTCEEEECTTSCEEEEECTT
T ss_pred CHHHHHHHHHhhc-------CCCceeEeecccCCccchhhhhhhhh------cCCCccccceeEEEEcCCCCEEEEeCCC
Confidence 45677788876 5 889999964 3332211 23333 356 899999999999999654
Q ss_pred CCCCCCHHHHHHHHHhh
Q psy224 495 LPVGRSVDETLRLVQAF 511 (547)
Q Consensus 495 ~~~~~~~~~il~~l~~l 511 (547)
. +.+++.+.|+++
T Consensus 167 ~----~~~~l~~~i~~l 179 (181)
T 2p31_A 167 V----SVEEVRPQITAL 179 (181)
T ss_dssp S----CHHHHHHHHHTT
T ss_pred C----CHHHHHHHHHHH
Confidence 3 356777776654
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=167.78 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=112.6
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhh----CCcEEEEEeCCC----hh
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKK----INTQVIACSTDS----HF 430 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~----~~~~vi~is~d~----~~ 430 (547)
.+|+|++.+ .+| +.+++++++||++||+|| ++|||+ |+.+++.|++++++|++ .++++++|+.|+ ++
T Consensus 2 ~ap~f~l~~-~~G--~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~ 77 (164)
T 2ggt_A 2 LGGPFSLTT-HTG--ERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 77 (164)
T ss_dssp CCCCCEEEE-TTS--CEEEGGGGTTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHH
T ss_pred CCCCeEEEe-CCC--CEEeHHHcCCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHH
Confidence 579999999 889 699999999999999999 999998 99999999999999987 489999999986 56
Q ss_pred hHHHHhhccccCCCCCCcceeeec---CCChHHHHHhCCcccCCCccee---------------EEEEEcCCCcEEEEEe
Q psy224 431 SHLAWCNIPRNKGGLGDMAIPILS---DKSMSIARSYGVLNEETGIPYR---------------GLFIIDDKQNLRQITI 492 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~fp~l~---D~~~~~~~~~~v~~~~~g~~~p---------------~~~lid~~G~v~~~~~ 492 (547)
..++|.+++ +++|+++. |...++++.|++.. .| ++||||++|+|++.+.
T Consensus 78 ~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~~v~~------~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 144 (164)
T 2ggt_A 78 AIANYVKEF-------SPKLVGLTGTREEVDQVARAYRVYY------SPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFG 144 (164)
T ss_dssp HHHHHHHTT-------CSSCEEEECCHHHHHHHHHTTTCCE------EEEEECTTSCEEEEECCEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHc-------CCCeEEEeCCHHHHHHHHHhcCeEE------EecCCCCCCCeeEeccceEEEECCCCeEEEEeC
Confidence 677888765 88999984 44578999999873 55 8999999999999996
Q ss_pred cCCCCCCCHHHHHHHHHhhH
Q psy224 493 NDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 493 ~~~~~~~~~~~il~~l~~l~ 512 (547)
+.. +.+++.+.|+++-
T Consensus 145 g~~----~~~~l~~~l~~ll 160 (164)
T 2ggt_A 145 QNK----RKGEIAASIATHM 160 (164)
T ss_dssp TTC----CHHHHHHHHHHHH
T ss_pred CCC----CHHHHHHHHHHHH
Confidence 554 3567777777654
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=176.97 Aligned_cols=136 Identities=7% Similarity=0.038 Sum_probs=102.3
Q ss_pred cCCCCCCeeeccccC-CceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 357 LEKPAPEFEGQAVVN-GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~-G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
.++.+|+|++++ .+ | +.+++++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|
T Consensus 22 ~~~~~p~f~l~~-~~~G--~~v~l~~~~Gk~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d 97 (208)
T 2f8a_A 22 SMQSVYAFSARP-LAGG--EPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENA 97 (208)
T ss_dssp CCCCGGGCEECB-TTCS--SCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCS
T ss_pred hcCccCceEeee-CCCC--CCccHHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCC
Confidence 678899999999 88 8 699999999999999999 9999999999999999999999999999999986
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCC--h----HHHH----HhCCc--------cc-----------CCCcceeEE
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKS--M----SIAR----SYGVL--------NE-----------ETGIPYRGL 478 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~--~----~~~~----~~~v~--------~~-----------~~g~~~p~~ 478 (547)
+++.+++|.+..+. ....+++||++.|.+ + .+.+ .++.. .. ......|++
T Consensus 98 ~~~~i~~f~~~~~~-~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~t 176 (208)
T 2f8a_A 98 KNEEILNSLKYVRP-GGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEK 176 (208)
T ss_dssp CHHHHHHHHHHTSS-CTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCE
T ss_pred CHHHHHHHHHhccc-ccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceE
Confidence 24566777762100 001189999997533 1 1222 22210 00 001134999
Q ss_pred EEEcCCCcEEEEEecCCCC
Q psy224 479 FIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 479 ~lid~~G~v~~~~~~~~~~ 497 (547)
||||++|+|++.+.+..+.
T Consensus 177 flID~~G~i~~~~~g~~~~ 195 (208)
T 2f8a_A 177 FLVGPDGVPLRRYSRRFQT 195 (208)
T ss_dssp EEECTTSCEEEEECTTSCG
T ss_pred EEEcCCCcEEEEeCCCCCH
Confidence 9999999999999766544
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=173.32 Aligned_cols=141 Identities=13% Similarity=0.260 Sum_probs=121.2
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCCh--hhHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSH--FSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~--~~~~~ 434 (547)
+|..+|+|++.+ .+| +.+++++++||++||+|| ++||++|+.+++.|++++++|++.+++|++|+.|.. +..++
T Consensus 36 ~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~ 111 (186)
T 1jfu_A 36 APLKLPDLAFED-ADG--KPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKT 111 (186)
T ss_dssp SCCBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHH
T ss_pred CCCcCCCcEeEc-CCC--CEeeHHHcCCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHH
Confidence 899999999999 889 699999999999999999 999999999999999999999988999999999864 66788
Q ss_pred HhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+++ ++ .||++.|.+.++.+.|++.... ..+|++||||++|+|++.+.+..+. +.+++++.|+++.
T Consensus 112 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~--~~~P~~~lid~~G~i~~~~~g~~~~--~~~~l~~~l~~ll 179 (186)
T 1jfu_A 112 FLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRA--LGMPTSVLVDPQGCEIATIAGPAEW--ASEDALKLIRAAT 179 (186)
T ss_dssp HHHHT-------TCCTTCCEECTTCHHHHHHHTTTCC--SSSSEEEEECTTSBEEEEEESCCCT--TSHHHHHHHHHHH
T ss_pred HHHHc-------CCCCCceEECCcchHHHHhcccccc--CCCCEEEEECCCCCEEEEEecCCcc--CHHHHHHHHHHHh
Confidence 88876 77 5999999999999999986321 2479999999999999999776532 3467777777654
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=168.77 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=111.4
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
++|+|.+. .+| +.+++++++||++||+|| ++|||+|+.++|.|.+++++|++.++++++|+.|..+..++|.+++
T Consensus 4 pa~~~~~~--~~G--~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~ 78 (151)
T 3raz_A 4 SADELAGW--KDN--TPQSLQSLKAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQT 78 (151)
T ss_dssp ---CEEET--TTC--CEECGGGCCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHS
T ss_pred Ccchhhcc--cCC--CEecHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHc
Confidence 44555543 468 699999999999999999 9999999999999999999998889999999999999999999886
Q ss_pred ccCCCCCCcceeeecCCC---hHHHHHhC--CcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 440 RNKGGLGDMAIPILSDKS---MSIARSYG--VLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~---~~~~~~~~--v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+++||++.|.+ .++++.|+ +. .+|++||||++|+|++.+.|.. +.+++.+.|+++..
T Consensus 79 -------~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~l~~ 140 (151)
T 3raz_A 79 -------PVSYPIWRYTGANSRNFMKTYGNTVG------VLPFTVVEAPKCGYRQTITGEV----NEKSLTDAVKLAHS 140 (151)
T ss_dssp -------CCSSCEEEECCSCHHHHHHTTTCCSC------CSSEEEEEETTTTEEEECCSCC----CHHHHHHHHHHHHT
T ss_pred -------CCCCceEecCccchHHHHHHhCCccC------CCCEEEEECCCCcEEEEECCCC----CHHHHHHHHHHHHH
Confidence 89999998763 67889999 65 5899999999999999997665 35666677776664
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=189.08 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=132.7
Q ss_pred ccCCCCCCee-----eccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC---
Q psy224 356 ALEKPAPEFE-----GQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--- 427 (547)
Q Consensus 356 ~~g~~~p~~~-----l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--- 427 (547)
.+|.++|+|+ +.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++|
T Consensus 52 ~vG~~aPdF~~~~~wL~d-~dG--~~vsLsdl~GK~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~ 127 (352)
T 2hyx_A 52 ESCGTAPDLKGITGWLNT-PGN--KPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYA 127 (352)
T ss_dssp CCCCBCCCCCSCCEEESS-GGG--CCCCGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSG
T ss_pred CCCCcCCCccccccccCC-CCC--CEEcHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCccc
Confidence 3899999999 888 788 699999999999999999 9999999999999999999999989999999985
Q ss_pred ---ChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy224 428 ---SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDET 504 (547)
Q Consensus 428 ---~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~i 504 (547)
+++..++|.+++ +++||++.|.+.++++.|++. .+|++||||++|+|++.+.+.. +.+++
T Consensus 128 ~~d~~~~~~~~~~~~-------~l~fpv~~D~~~~l~~~ygV~------~~Pt~~lID~~G~Iv~~~~G~~----~~~~l 190 (352)
T 2hyx_A 128 FEKVPGNVAKGAANL-------GISYPIALDNNYATWTNYRNR------YWPAEYLIDATGTVRHIKFGEG----DYNVT 190 (352)
T ss_dssp GGGCHHHHHHHHHHH-------TCCSCEEECTTSHHHHHTTCC------EESEEEEECTTSBEEEEEESBC----CHHHH
T ss_pred ccCCHHHHHHHHHHc-------CCCccEEeCCcHHHHHHcCCC------ccCEEEEEeCCCeEEEEEcCCC----CHHHH
Confidence 466777888776 899999999999999999997 5899999999999999997765 35666
Q ss_pred HHHHHhhHhhhhcCccccCCccCC--CcccccCcc
Q psy224 505 LRLVQAFQFVAEHGEVCPAGWKPG--SKTMKADPS 537 (547)
Q Consensus 505 l~~l~~l~~~~~~~~~~~~~w~~~--~~~~~~~~~ 537 (547)
.+.|+++-.....+...|...... ++.+.+..+
T Consensus 191 ~~~I~~lL~e~~~~~~lpap~~~~~~~~~~~~~~s 225 (352)
T 2hyx_A 191 ETLVRQLLNDAKPGVKLPQPSSTTTPDLTPRAALT 225 (352)
T ss_dssp HHHHHHHHHHHSTTCCCCSCGGGTSCCCCCCSCSC
T ss_pred HHHHHHHHhhccCCCCCCCCccccccccCccccCC
Confidence 666666654444556666665443 444443333
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=165.33 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=116.3
Q ss_pred ccCCCCCCeeeccccCCceeeEecc--CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHH-hhCCcEEEEEeCCC-hhh
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEF-KKINTQVIACSTDS-HFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~--~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~-~~~~~~vi~is~d~-~~~ 431 (547)
.+|+++|+|++.+ .+| +.++++ +++||++||+|| ++|||+|..++|.|.+++++| +++++++++|+.|. .+.
T Consensus 6 ~~g~~~p~~~l~~-~~g--~~~~l~~~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~ 81 (148)
T 3fkf_A 6 TVGKSAPYFSLPN-EKG--EKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREA 81 (148)
T ss_dssp CTTSBCCCCCEEB-TTS--CEECTTSTTTTTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHH
T ss_pred cCCCcCCCeEeeC-CCC--CEEeccccccCCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHH
Confidence 4899999999999 888 699999 999999999999 999999999999999999999 88899999999985 456
Q ss_pred HHHHhhccccCCCCCCcceeeecCC---ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDK---SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~---~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+++.+++ +++||++.|. +..+.+.|++. .+|+++|||++|++++.+. +.+++.+.|
T Consensus 82 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~~~l 141 (148)
T 3fkf_A 82 WETAIKKD-------TLSWDQVCDFTGLSSETAKQYAIL------TLPTNILLSPTGKILARDI-------QGEALTGKL 141 (148)
T ss_dssp HHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHHHHHH
T ss_pred HHHHHHHc-------CCCceEEEccCCcchHHHHhcCCC------CcCEEEEECCCCeEEEecC-------CHHHHHHHH
Confidence 77777765 8999999998 67999999998 5899999999999999884 455666666
Q ss_pred Hhh
Q psy224 509 QAF 511 (547)
Q Consensus 509 ~~l 511 (547)
+++
T Consensus 142 ~~l 144 (148)
T 3fkf_A 142 KEL 144 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=178.58 Aligned_cols=140 Identities=11% Similarity=0.057 Sum_probs=106.3
Q ss_pred cCCCCCCeeeccccC-CceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 357 LEKPAPEFEGQAVVN-GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~-G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
....+|+|++++ .+ | +.++|++|+||++||+|| ++|||+|+ ++|.|++++++|+++|++|++|++|
T Consensus 31 ~~~~~pdF~l~d-~~~G--~~v~Lsd~~GKvvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~ 105 (215)
T 2i3y_A 31 EKGTIYDYEAIA-LNKN--EYVSFKQYVGKHILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPG 105 (215)
T ss_dssp CCCCGGGCEEEB-SSSS--CEEEGGGGTTSEEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred ccCCcCCcEeee-CCCC--CEEcHHHhCCCEEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCC
Confidence 456799999999 88 8 699999999999999999 99999999 9999999999999999999999975
Q ss_pred ChhhHHHHhh------ccccCCCCCCcceeeecCCC--hH----HHHHhC--------Cccc-----------CCCccee
Q psy224 428 SHFSHLAWCN------IPRNKGGLGDMAIPILSDKS--MS----IARSYG--------VLNE-----------ETGIPYR 476 (547)
Q Consensus 428 ~~~~~~~~~~------~~~~~~~~~~~~fp~l~D~~--~~----~~~~~~--------v~~~-----------~~g~~~p 476 (547)
+.+++++|++ ++ +++||++.|.+ +. +...+. +... ..-...|
T Consensus 106 ~~~~i~~f~~~~~~~~~~-------~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~np 178 (215)
T 2i3y_A 106 DNKEILPGLKYVRPGGGF-------VPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNF 178 (215)
T ss_dssp CHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTT
T ss_pred CHHHHHHHHHhccchhcc-------CccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCc
Confidence 2456677877 44 89999998643 22 222111 1100 0001137
Q ss_pred EEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 477 ~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++||||++|+|++.+.+.. +.+++.+.|+++-
T Consensus 179 ttfLID~~G~vv~~~~g~~----~~~~l~~~I~~ll 210 (215)
T 2i3y_A 179 EKFLVGPDGIPVMRWSHRA----TVSSVKTDILAYL 210 (215)
T ss_dssp CEEEECTTSCEEEEECTTS----CHHHHHHHHHHHG
T ss_pred eEEEECCCCeEEEEeCCCC----CHHHHHHHHHHHH
Confidence 9999999999999996544 3456666666654
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=175.08 Aligned_cols=129 Identities=11% Similarity=0.103 Sum_probs=104.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------- 428 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------- 428 (547)
.+|+++|+|++.+ .+| +++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++|.
T Consensus 24 ~~g~~~p~f~l~~-~~G--~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~ 99 (185)
T 2gs3_A 24 RCARSMHEFSAKD-IDG--HMVNLDKYRGFVCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPG 99 (185)
T ss_dssp GGCCCGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCS
T ss_pred cCCCCcCCceeEc-CCC--CEeeHHHcCCCEEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCC
Confidence 3899999999999 899 699999999999999999 99999999999999999999999999999999863
Q ss_pred -hhhHHHHhhccccCCCCCCcceeeec--CCChH----HHHHh-------CCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 429 -HFSHLAWCNIPRNKGGLGDMAIPILS--DKSMS----IARSY-------GVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~~fp~l~--D~~~~----~~~~~-------~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
++..++|.+++ +++||++. |.+++ +.+.+ ++... .....|++||||++|+|++.+.+.
T Consensus 100 ~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~~~g~ 171 (185)
T 2gs3_A 100 SNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKRYGPM 171 (185)
T ss_dssp CHHHHHHHHHHT-------TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSS-SCCSSCCEEEECTTSCEEEEECTT
T ss_pred CHHHHHHHHHHc-------CCCCeeeeeeccCChhhhHHHHHHHhhcccccccCC-cccccceEEEECCCCCEEEeeCCC
Confidence 45677788765 89999997 44433 33333 32210 011258999999999999999765
Q ss_pred CC
Q psy224 495 LP 496 (547)
Q Consensus 495 ~~ 496 (547)
.+
T Consensus 172 ~~ 173 (185)
T 2gs3_A 172 EE 173 (185)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-21 Score=176.58 Aligned_cols=138 Identities=15% Similarity=0.124 Sum_probs=106.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-------- 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-------- 428 (547)
.+.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|.
T Consensus 22 ~~~~~p~f~l~d-~~G--~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~ 97 (187)
T 3dwv_A 22 AASSIFDFEVLD-ADH--KPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGN 97 (187)
T ss_dssp TCCSGGGSCCBB-TTS--CBCCGGGGTTSCEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSB
T ss_pred CCCccCCeEEEc-CCC--CEeeHHHhCCCEEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCC
Confidence 678999999999 899 699999999999999999 99999999999999999999999999999999873
Q ss_pred hhhHHHHhhccccCCCCCCcceeeec--CCChHHH-HHh--------CCcccCCCccee---EEEEEcCCCcEEEEEecC
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILS--DKSMSIA-RSY--------GVLNEETGIPYR---GLFIIDDKQNLRQITIND 494 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~--D~~~~~~-~~~--------~v~~~~~g~~~p---~~~lid~~G~v~~~~~~~ 494 (547)
.+..++|.++ ++ +++||++. |.++..+ ..| ++.. ...+| ++||||++|+|++.+.+.
T Consensus 98 ~~~~~~~~~~--~~----~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~---~~~iP~~~~~~liD~~G~i~~~~~g~ 168 (187)
T 3dwv_A 98 EEEIKEFVCT--KF----KAEFPIMAKINVNGENAHPLYEYMKKTKPGILA---TKAIKWNFTSFLIDRDGVPVERFSPG 168 (187)
T ss_dssp TTHHHHSCCB--CC----CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBS---SSSCCSTTCEEEECTTSCEEEEECTT
T ss_pred HHHHHHHHHh--cc----CCCCceeeccccCCcchhHHHHHHHhhcCCccC---CCccccceeEEEECCCCCEEEEECCC
Confidence 4455555552 12 89999997 4443322 122 3221 01367 999999999999999655
Q ss_pred CCCCCCHHHHHHHHHhh
Q psy224 495 LPVGRSVDETLRLVQAF 511 (547)
Q Consensus 495 ~~~~~~~~~il~~l~~l 511 (547)
. +.+++.+.|+++
T Consensus 169 ~----~~~~l~~~i~~l 181 (187)
T 3dwv_A 169 A----SVKDIEEKLIPL 181 (187)
T ss_dssp C----CHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHH
Confidence 4 345566666554
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=174.69 Aligned_cols=139 Identities=11% Similarity=0.058 Sum_probs=110.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++|
T Consensus 22 ~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~ 97 (183)
T 2obi_A 22 RCARSMHEFSAKD-IDG--HMVNLDKYRGFVCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPG 97 (183)
T ss_dssp GGCCSGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred cccCcccceEEEc-CCC--CEeeHHHcCCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCC
Confidence 4899999999999 899 699999999999999999 9999999999999999999999999999999986
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeec--CCChHH----HHHh-------CCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILS--DKSMSI----ARSY-------GVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~--D~~~~~----~~~~-------~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+++..++|.+++ +++||++. |.+... .+.+ ++... .....|++||||++|+|++.+.+.
T Consensus 98 ~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~~~g~ 169 (183)
T 2obi_A 98 SNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKRYGPM 169 (183)
T ss_dssp CHHHHHHHHHTT-------TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSS-SCCSTTCEEEECTTSCEEEEECTT
T ss_pred CHHHHHHHHHHc-------CCCceEEeeeccCCcchhHHHHHhhccCCCCCcccc-cccccceEEEECCCCCEEEEeCCC
Confidence 456777888765 89999997 655442 2222 33210 011258999999999999999664
Q ss_pred CCCCCCHHHHHHHHHh
Q psy224 495 LPVGRSVDETLRLVQA 510 (547)
Q Consensus 495 ~~~~~~~~~il~~l~~ 510 (547)
.+ .+++.+.|++
T Consensus 170 ~~----~~~l~~~i~~ 181 (183)
T 2obi_A 170 EE----PLVIEKDLPH 181 (183)
T ss_dssp SC----THHHHTTSGG
T ss_pred CC----HHHHHHHHHH
Confidence 42 3455555443
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=171.28 Aligned_cols=125 Identities=11% Similarity=0.185 Sum_probs=102.1
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------C
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--------S 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--------~ 428 (547)
+|.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++| +
T Consensus 8 ~g~~~p~f~l~~-~~g--~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 83 (170)
T 2p5q_A 8 NPESVHDFTVKD-AKE--NDVDLSIFKGKVLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGT 83 (170)
T ss_dssp --CCGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSC
T ss_pred CCccccceEEEc-CCC--CEecHHHhCCCEEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCC
Confidence 899999999999 899 699999999999999999 9999999999999999999999999999999986 4
Q ss_pred hhhHHHHhh-ccccCCCCCCcceeee--cCCChHH----HH-----HhCCcccCCCccee---EEEEEcCCCcEEEEEec
Q psy224 429 HFSHLAWCN-IPRNKGGLGDMAIPIL--SDKSMSI----AR-----SYGVLNEETGIPYR---GLFIIDDKQNLRQITIN 493 (547)
Q Consensus 429 ~~~~~~~~~-~~~~~~~~~~~~fp~l--~D~~~~~----~~-----~~~v~~~~~g~~~p---~~~lid~~G~v~~~~~~ 493 (547)
.+..++|.+ ++ +++||++ .|.+... .+ .+++.. ..+| ++||||++|+|++.+.+
T Consensus 84 ~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~----~~~p~~~~~~lid~~G~i~~~~~g 152 (170)
T 2p5q_A 84 NDQITDFVCTRF-------KSEFPIFDKIDVNGENASPLYRFLKLGKWGIFG----DDIQWNFAKFLVNKDGQVVDRYYP 152 (170)
T ss_dssp HHHHHHHHHHHT-------CCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTC----SCCCSTTCEEEECTTSCEEEEECT
T ss_pred HHHHHHHHHHhc-------CCCceeEeeeccCCCchHHHHHHHHhcCCCccC----CcccccccEEEECCCCCEEEeeCC
Confidence 566777777 44 8899999 5665433 21 235421 1356 99999999999999976
Q ss_pred CCC
Q psy224 494 DLP 496 (547)
Q Consensus 494 ~~~ 496 (547)
..+
T Consensus 153 ~~~ 155 (170)
T 2p5q_A 153 TTS 155 (170)
T ss_dssp TSC
T ss_pred CCC
Confidence 554
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-20 Score=163.45 Aligned_cols=131 Identities=14% Similarity=0.310 Sum_probs=114.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC----Chhh
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD----SHFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d----~~~~ 431 (547)
.+|..+|+|++.+ .+| +.+++++ +||++||+|| ++|||+|..+++.|.+++++|++.+++++.|+.| +.+.
T Consensus 10 ~~g~~~p~~~l~~-~~g--~~~~l~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~ 84 (145)
T 3erw_A 10 KQPAVPAVFLMKT-IEG--EDISIPN-KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQV 84 (145)
T ss_dssp --CCSCCEEEEEC-TTS--CEEEESC-TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHH
T ss_pred cCCCcCCCceeec-CCC--CEEeHHH-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHH
Confidence 4899999999999 888 6999999 9999999999 9999999999999999999998789999999986 5667
Q ss_pred HHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.++|.+++ +++||++.|.+.++.+.|++. .+|+++|||++|+|+..+.+..+ .+++.+.|
T Consensus 85 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~~~l~~~l 144 (145)
T 3erw_A 85 VEDFIKAN-------KLTFPIVLDSKGELMKEYHII------TIPTSFLLNEKGEIEKTKIGPMT----AEQLKEWT 144 (145)
T ss_dssp HHHHHHHT-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCCEEEEEESCCC----HHHHHHHH
T ss_pred HHHHHHHc-------CCceeEEEcCchhHHHhcCcC------ccCeEEEEcCCCcEEEEEcCCcC----HHHHHHhh
Confidence 77777765 899999999999999999998 58999999999999999976653 45555443
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=166.02 Aligned_cols=140 Identities=17% Similarity=0.290 Sum_probs=118.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~ 434 (547)
.+|.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.|. ....++
T Consensus 9 ~~g~~~p~~~l~~-~~g--~~~~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~ 84 (165)
T 3or5_A 9 ARPTPAPSFSGVT-VDG--KPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKN 84 (165)
T ss_dssp CCCCBCCCCEEEC-TTS--CEEEGGGGTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHH
T ss_pred cCCCCCCCceeeC-CCC--CEechhHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH
Confidence 4899999999999 889 699999999999999999 99999999999999999999999899999999986 667788
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
|.+++ +++||++.|.+ ++.+.|+...+.....+|++||||++|+|+..+.+.. +.+++.+.|+++
T Consensus 85 ~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~ 149 (165)
T 3or5_A 85 YMKTQ-------GIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPR----SKADFDRIVKMA 149 (165)
T ss_dssp HHHHH-------TCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCC----CHHHHHHHHHHH
T ss_pred HHHHc-------CCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCC----CHHHHHHHHHHH
Confidence 88876 89999999865 8889995332211225899999999999999996655 345566665554
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-21 Score=176.91 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=110.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------C
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--------S 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--------~ 428 (547)
.++++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++| +
T Consensus 24 ~~~~~p~f~l~~-~~G--~~~~l~~~~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~ 99 (190)
T 2vup_A 24 AASSIFDFEVLD-ADH--KPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGN 99 (190)
T ss_dssp CCCSGGGSCCBB-TTS--SBCCGGGGTTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSC
T ss_pred CCCcccCeEEEc-CCC--CEEEHHHcCCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCC
Confidence 788999999999 899 699999999999999999 9999999999999999999999999999999998 5
Q ss_pred hhhHHHHh-hccccCCCCCCcceeeec--CCChHH----HH-----HhCCcccCCCccee------EEEEEcCCCcEEEE
Q psy224 429 HFSHLAWC-NIPRNKGGLGDMAIPILS--DKSMSI----AR-----SYGVLNEETGIPYR------GLFIIDDKQNLRQI 490 (547)
Q Consensus 429 ~~~~~~~~-~~~~~~~~~~~~~fp~l~--D~~~~~----~~-----~~~v~~~~~g~~~p------~~~lid~~G~v~~~ 490 (547)
++..++|. +++ +++||++. |.+... .+ .|++. ..| ++||||++|+|++.
T Consensus 100 ~~~~~~~~~~~~-------~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~------~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 100 EEEIKEFVCTKF-------KAEFPIMAKINVNGENAHPLYEYMKKTKPGIL------KTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp HHHHHHHHHHHH-------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGG------GCCSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHhc-------CCCeEEEeecccCcccccHHHHHHHhhcCCcC------CCccccccceEEEECCCCcEEEE
Confidence 66778888 666 88999997 444332 22 24654 356 99999999999999
Q ss_pred EecCCCCCCCHHHHHHHHHhh
Q psy224 491 TINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 491 ~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+..+ .+++.+.|+++
T Consensus 167 ~~g~~~----~~~l~~~i~~l 183 (190)
T 2vup_A 167 FSPGAS----VKDIEKKLIPL 183 (190)
T ss_dssp ECTTCC----HHHHHHHHHHH
T ss_pred ECCCCC----HHHHHHHHHHH
Confidence 966543 45565655554
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-21 Score=173.57 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=93.7
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------C
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--------S 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--------~ 428 (547)
.+..+|+|++++ .+| +.+++++++||++||+|| ++|||+|+ ++|.|++++++|++++++|++|++| +
T Consensus 8 ~~~~~~~f~l~d-~~G--~~~~l~~~~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~ 82 (171)
T 3cmi_A 8 HMSEFYKLAPVD-KKG--QPFPFDQLKGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGS 82 (171)
T ss_dssp --CGGGGCCCBB-TTS--CBCCGGGGTTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------
T ss_pred chhheeeeEEEc-CCC--CEecHHHcCCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCC
Confidence 456789999999 899 699999999999999999 99999999 9999999999999999999999985 3
Q ss_pred hhhHHHHh-hccccCCCCCCcceeeecCCC--hH-HH--------HHhCCcccCCCccee------EEEEEcCCCcEEEE
Q psy224 429 HFSHLAWC-NIPRNKGGLGDMAIPILSDKS--MS-IA--------RSYGVLNEETGIPYR------GLFIIDDKQNLRQI 490 (547)
Q Consensus 429 ~~~~~~~~-~~~~~~~~~~~~~fp~l~D~~--~~-~~--------~~~~v~~~~~g~~~p------~~~lid~~G~v~~~ 490 (547)
++..++|. +++ +++||++.|.+ .. .. +.|++. ..| ++||||++|+|++.
T Consensus 83 ~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~------~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 83 DEEIAQFCQLNY-------GVTFPIMKKIDVNGGNEDPVYKFLKSQKSGML------GLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp -------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSS------SCCSCCSTTCEEEECSSSCEEEE
T ss_pred HHHHHHHHHhcc-------CCCceEEeeccCCCccchHHHHHHHhccCCcC------CCCcccccceEEEECCCCCEEEE
Confidence 44555666 544 89999998754 22 21 235655 467 99999999999999
Q ss_pred EecCCCC
Q psy224 491 TINDLPV 497 (547)
Q Consensus 491 ~~~~~~~ 497 (547)
+.+..+.
T Consensus 150 ~~g~~~~ 156 (171)
T 3cmi_A 150 YSSLTKP 156 (171)
T ss_dssp ECTTSCG
T ss_pred eCCCCCH
Confidence 9765543
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-20 Score=167.29 Aligned_cols=143 Identities=10% Similarity=0.048 Sum_probs=114.4
Q ss_pred cCCCCC-CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhh--CCcEEEEEeCC---Ch
Q psy224 357 LEKPAP-EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKK--INTQVIACSTD---SH 429 (547)
Q Consensus 357 ~g~~~p-~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~--~~~~vi~is~d---~~ 429 (547)
+|+++| +|++++ .+| +++++++++||++||+|| ++||| +|+.+++.|++++++|++ .++++++||.| ++
T Consensus 3 ~G~~~P~~f~l~d-~~G--~~v~l~~~~Gk~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~ 78 (170)
T 3me7_A 3 LGTYVPGDITLVD-SYG--NEFQLKNLKGKPIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTL 78 (170)
T ss_dssp TTCBCCTTCEEEE-TTC--CEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCH
T ss_pred CCCcCCCCeEEEc-CCc--CEEchHHhCCCEEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCH
Confidence 799999 999999 899 699999999999999999 99998 599999999999999975 56999999987 45
Q ss_pred hhHHHHhhccccCCCCCCcce---eee--cC--CChHHHHHhCCcccC--C-CcceeEEEEEcCCCcEEEEEecCCCCCC
Q psy224 430 FSHLAWCNIPRNKGGLGDMAI---PIL--SD--KSMSIARSYGVLNEE--T-GIPYRGLFIIDDKQNLRQITINDLPVGR 499 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~f---p~l--~D--~~~~~~~~~~v~~~~--~-g~~~p~~~lid~~G~v~~~~~~~~~~~~ 499 (547)
+.+++|.+++ ++++ +++ .| ...+++++||+.... . ....|++||||++|+|+..+.+...
T Consensus 79 ~~~~~~~~~~-------~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~--- 148 (170)
T 3me7_A 79 EDIKRFQKEY-------GIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNY--- 148 (170)
T ss_dssp HHHHHHHHHT-------TCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSC---
T ss_pred HHHHHHHHHc-------CCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCC---
Confidence 6677887765 5444 343 23 337888998865311 0 1135889999999999999866543
Q ss_pred CHHHHHHHHHhhHh
Q psy224 500 SVDETLRLVQAFQF 513 (547)
Q Consensus 500 ~~~~il~~l~~l~~ 513 (547)
+.+++++.|+++..
T Consensus 149 ~~~~i~~~l~~~~~ 162 (170)
T 3me7_A 149 NYLEFVNALRLARG 162 (170)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhc
Confidence 57899988887763
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-20 Score=173.52 Aligned_cols=139 Identities=10% Similarity=0.071 Sum_probs=102.6
Q ss_pred cCCCCCCeeeccccC-CceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 357 LEKPAPEFEGQAVVN-GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~-G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
....+|+|++++ .+ | +.+++++++||++||+|| ++|||+| .++|.|++++++|+++|++|++|++|
T Consensus 13 ~~~~~pdF~l~d-~~~G--~~v~Ls~~kGKvvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~ 87 (207)
T 2r37_A 13 ISGTIYEYGALT-IDGE--EYIPFKQYAGKYVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPG 87 (207)
T ss_dssp --CCGGGCEEEB-TTSS--CEEEGGGGTTSEEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCS
T ss_pred ccCccCCeEeee-CCCC--CEEcHHHhCCCEEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCC
Confidence 455789999999 88 8 699999999999999999 9999999 79999999999999999999999965
Q ss_pred ChhhHHHHhh------ccccCCCCCCcceeeecCCC--hH----HHHHh----C----Cccc-----------CCCccee
Q psy224 428 SHFSHLAWCN------IPRNKGGLGDMAIPILSDKS--MS----IARSY----G----VLNE-----------ETGIPYR 476 (547)
Q Consensus 428 ~~~~~~~~~~------~~~~~~~~~~~~fp~l~D~~--~~----~~~~~----~----v~~~-----------~~g~~~p 476 (547)
+.+.+++|.+ ++ +++||++.|.+ +. +...+ . +... ..-...|
T Consensus 88 ~~~~i~~f~~~~~~~~~~-------~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ 160 (207)
T 2r37_A 88 ENSEILPTLKYVRPGGGF-------VPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNF 160 (207)
T ss_dssp CHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTT
T ss_pred CHHHHHHHHHhcchhhcc-------CccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccc
Confidence 2456777877 44 89999997643 22 22211 1 1100 0001137
Q ss_pred EEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 477 ~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
++||||++|+|++.+.+... .+++.+.|+++
T Consensus 161 ttflID~~G~i~~~~~g~~~----~~~l~~~I~~l 191 (207)
T 2r37_A 161 EKFLVGPDGIPIMRWHHRTT----VSNVKMDILSY 191 (207)
T ss_dssp CEEEECTTSCEEEEECTTSC----HHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEECCCCC----HHHHHHHHHHH
Confidence 99999999999999965543 34444444443
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=166.22 Aligned_cols=134 Identities=18% Similarity=0.251 Sum_probs=118.8
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC---CChhh
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST---DSHFS 431 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~---d~~~~ 431 (547)
..+|+++|+|++.+ .+| +.+++++++ |++||+|| ++||++|..+++.|.+++++| ++++++|+. ++.+.
T Consensus 5 l~~g~~~p~f~l~~-~~g--~~~~l~~~~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~~ 76 (154)
T 3ia1_A 5 VKPGEPLPDFLLLD-PKG--QPVTPATVS-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTREV 76 (154)
T ss_dssp CCSBEECCCCCEEC-TTS--CEECTTTSC-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHHH
T ss_pred CCCCCcCCceEEEC-CCC--CEechHHcC-CeEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHHH
Confidence 34899999999999 888 699999999 99999999 999999999999999999999 899999999 66777
Q ss_pred HHHHhhccccCCCCCCcceeeecC---CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSD---KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D---~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.++|.+++ +++||++.| .+.++++.|++. .+|++||||++|+|+..+.+.. +.+++.+.|
T Consensus 77 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l 139 (154)
T 3ia1_A 77 VLEYMKTY-------PRFIPLLASDRDRPHEVAARFKVL------GQPWTFVVDREGKVVALFAGRA----GREALLDAL 139 (154)
T ss_dssp HHHHHTTC-------TTEEECBCCSSCCHHHHHTTSSBC------SSCEEEEECTTSEEEEEEESBC----CHHHHHHHH
T ss_pred HHHHHHHc-------CCCcccccccccchHHHHHHhCCC------cccEEEEECCCCCEEEEEcCCC----CHHHHHHHH
Confidence 77888766 899999998 679999999988 5899999999999999997654 467788888
Q ss_pred HhhHh
Q psy224 509 QAFQF 513 (547)
Q Consensus 509 ~~l~~ 513 (547)
+++..
T Consensus 140 ~~~~~ 144 (154)
T 3ia1_A 140 LLAGA 144 (154)
T ss_dssp HHTTC
T ss_pred HhccC
Confidence 77663
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=163.39 Aligned_cols=137 Identities=12% Similarity=0.164 Sum_probs=112.0
Q ss_pred CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhh----CCcEEEEEeCCC----hhhH
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKK----INTQVIACSTDS----HFSH 432 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~----~~~~vi~is~d~----~~~~ 432 (547)
|+|++.+ .+| +.+++++++||++||+|| ++|||+ |+.+++.|++++++|++ .++++++|+.|+ ++..
T Consensus 7 p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~ 82 (171)
T 2rli_A 7 GDFHLLD-HRG--RARCKADFRGQWVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAM 82 (171)
T ss_dssp SCCEEEE-TTS--CEEETTTTTTSEEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHH
T ss_pred CCeEEEe-CCC--CEEeHHHhCCCEEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHH
Confidence 8999999 889 699999999999999999 999997 99999999999999975 589999999984 5677
Q ss_pred HHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCcccCC-----C----cceeEEEEEcCCCcEEEEEecCCCCCCC
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNEET-----G----IPYRGLFIIDDKQNLRQITINDLPVGRS 500 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~~~-----g----~~~p~~~lid~~G~v~~~~~~~~~~~~~ 500 (547)
++|.+++ +++|+++.|.. .++++.|++..... + ...|++||||++|+|++.+.+.. +
T Consensus 83 ~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~----~ 151 (171)
T 2rli_A 83 ARYVQDF-------HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR----S 151 (171)
T ss_dssp HHHHHTT-------CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSC----C
T ss_pred HHHHHHc-------CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCC----C
Confidence 7888766 88999998743 57899999873110 0 01248999999999999997654 4
Q ss_pred HHHHHHHHHhhHh
Q psy224 501 VDETLRLVQAFQF 513 (547)
Q Consensus 501 ~~~il~~l~~l~~ 513 (547)
.+++.+.|+++-.
T Consensus 152 ~~~l~~~l~~ll~ 164 (171)
T 2rli_A 152 AEQISDSVRRHMA 164 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677777776653
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=164.09 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=109.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhhC--CcEEEEEeCCC----h
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKKI--NTQVIACSTDS----H 429 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~----~ 429 (547)
+|.++|+|+|.| .+| +++++++++||++||+|| ++||| +|+.+++.|.++++++++. ++++++||+|+ +
T Consensus 8 ~~~~~PdF~L~d-~~G--~~v~l~d~~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp 83 (170)
T 4hde_A 8 LNWDLETFQFTN-QDG--KPFGTKDLKGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKP 83 (170)
T ss_dssp CCBCCCCCEEEC-TTS--CEEEHHHHTTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred CCCcCCCcEEEC-CCC--CEEeHHHhCCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccH
Confidence 788999999999 999 699999999999999999 99998 7999999999999999865 48999999875 4
Q ss_pred hhHHHHhhccccCCCCCCcceeeecCCCh-H----HHHHhCCcccCC--C--cceeEEEEEcCCCcEEEEEecCCCCCCC
Q psy224 430 FSHLAWCNIPRNKGGLGDMAIPILSDKSM-S----IARSYGVLNEET--G--IPYRGLFIIDDKQNLRQITINDLPVGRS 500 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~fp~l~D~~~-~----~~~~~~v~~~~~--g--~~~p~~~lid~~G~v~~~~~~~~~~~~~ 500 (547)
+.+++|.+++ .....+|.++.+.+. . ....|+...... + .-.|++||||++|+|+..+.+... ..
T Consensus 84 ~~l~~y~~~~----~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~--~~ 157 (170)
T 4hde_A 84 ENLKAFIQKF----TEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISN--TP 157 (170)
T ss_dssp HHHHHHHTTT----CSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSS--CC
T ss_pred HHHHHHHHHc----CCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCC--CC
Confidence 5667777654 222456777776542 2 223455443221 1 113789999999999999865332 24
Q ss_pred HHHHHHHHHhh
Q psy224 501 VDETLRLVQAF 511 (547)
Q Consensus 501 ~~~il~~l~~l 511 (547)
.+++++.|+.|
T Consensus 158 ~~~l~~~ik~L 168 (170)
T 4hde_A 158 YEDIIRDMKRL 168 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68888888765
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=167.85 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=115.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
.+|..+|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+ +++|++|+.|
T Consensus 12 ~~g~~~p~~~l~~-~~g--~~~~l~~~~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~ 85 (165)
T 3ha9_A 12 EVLEREASFSLTT-IDG--EVISLNNVGGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKAL 85 (165)
T ss_dssp HHHHHHHCCCEEB-TTS--CEECGGGCCSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHH
T ss_pred cccCcCCCCEeec-CCC--CEeeHHHhCCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEEeccccccccc
Confidence 4899999999999 889 699999999999999999 9999999999999999999998 8999999997
Q ss_pred -----------ChhhHHHHhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 428 -----------SHFSHLAWCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 428 -----------~~~~~~~~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+.+..++|.+++ ++ +||++.| +.++.+.|++. .+|+++|||++|+|++ .+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d-~~~~~~~~~v~------~~P~~~lid~~G~i~~--~g~~ 149 (165)
T 3ha9_A 86 GLNKPGYPPPDTPEMFRKFIANY-------GDPSWIMVMD-DGSLVEKFNVR------SIDYIVIMDKSSNVLY--AGTT 149 (165)
T ss_dssp TCCSTTSCCCCCHHHHHHHHHHH-------SCTTSEEEEC-CSHHHHHTTCC------SSSEEEEEETTCCEEE--EEES
T ss_pred ccccccCCCCCCHHHHHHHHHHc-------CCCCeeEEeC-hHHHHHHhCCC------CceEEEEEcCCCcEEE--eCCC
Confidence 567778888876 88 9999999 99999999998 5899999999999999 3444
Q ss_pred CCCCCHHHHHHHHHhhH
Q psy224 496 PVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 496 ~~~~~~~~il~~l~~l~ 512 (547)
+ +.+++.+.|+++.
T Consensus 150 ~---~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 150 P---SLGELESVIKSVQ 163 (165)
T ss_dssp C---CHHHHHHHHHHC-
T ss_pred C---CHHHHHHHHHHHh
Confidence 2 3566777766653
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-20 Score=161.65 Aligned_cols=134 Identities=14% Similarity=0.238 Sum_probs=116.5
Q ss_pred cCCCCCCeee--ccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC------C
Q psy224 357 LEKPAPEFEG--QAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD------S 428 (547)
Q Consensus 357 ~g~~~p~~~l--~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d------~ 428 (547)
+|+++|+|++ .+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++ +++++|+.| +
T Consensus 3 ~g~~~P~f~~~~~~-~~g--~~~~~~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~ 77 (148)
T 2b5x_A 3 LRQPMPELTGEKAW-LNG--EVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDLD 77 (148)
T ss_dssp TTCBCCCCCCCSEE-ESC--CCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTSS
T ss_pred CCCCCCCCcccccc-ccC--cccchhhcCCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccccC
Confidence 7999999999 56 788 589999999999999999 999999999999999999999876 999999987 4
Q ss_pred hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+..++|.+++ +++||++.|.+.++++.|++. .+|+++|+|++|+++..+.+.. +.+++.+.|
T Consensus 78 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l 140 (148)
T 2b5x_A 78 PGKIKETAAEH-------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGGS----GMKMLEKRV 140 (148)
T ss_dssp HHHHHHHHHHT-------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESCS----TTHHHHHHH
T ss_pred HHHHHHHHHHc-------CCCcceEECCchhHHHHhCCC------CCCEEEEECCCCcEEEEecCCC----CHHHHHHHH
Confidence 56777787766 899999999999999999997 5899999999999999997654 345666666
Q ss_pred HhhH
Q psy224 509 QAFQ 512 (547)
Q Consensus 509 ~~l~ 512 (547)
+++-
T Consensus 141 ~~~l 144 (148)
T 2b5x_A 141 NRVL 144 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=155.94 Aligned_cols=130 Identities=25% Similarity=0.396 Sum_probs=111.2
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe------CCChhhHH
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS------TDSHFSHL 433 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is------~d~~~~~~ 433 (547)
++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.++++++ ..++.+++|. .++....+
T Consensus 1 ~~p~f~l~~-~~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~-~~~~~~v~i~~~~~~~~~~~~~~~ 75 (138)
T 4evm_A 1 EVADFELMG-VDG--KTYRLSDYKGKKVYLKFW-ASWCSICLASLPDTDEIAKEA-GDDYVVLTVVSPGHKGEQSEADFK 75 (138)
T ss_dssp CCCCCEEEB-TTS--CEEEGGGGTTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTC-TTTEEEEEEECTTSTTCCCHHHHH
T ss_pred CCCcceeEC-CCC--CEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCCchhhHHHHH
Confidence 479999999 888 699999999999999999 999999999999999999984 4579999993 34456667
Q ss_pred HHhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 434 AWCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|.+++ ++ +||++.|.+.++.+.|++. ..|+++|+|++|++++.+.+.. +.+++.+.|+++
T Consensus 76 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~l 137 (138)
T 4evm_A 76 NWYKGL-------DYKNLPVLVDPSGKLLETYGVR------SYPTQAFIDKEGKLVKTHPGFM----EKDAILQTLKEL 137 (138)
T ss_dssp HHHTTC-------CCTTCCEEECTTCHHHHHTTCC------SSSEEEEECTTCCEEEEEESCC----CHHHHHHHHHHC
T ss_pred HHHhhc-------CCCCeeEEECcchHHHHHcCcc------cCCeEEEECCCCcEEEeecCCC----cHHHHHHHHHhh
Confidence 777665 67 9999999999999999997 5899999999999999997654 356777777654
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=156.35 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=113.7
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHHHhhc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLAWCNI 438 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~~~~ 438 (547)
++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|++++++++ ++++++|+.+. .+..++|.++
T Consensus 3 ~~p~~~l~~-~~g--~~~~l~~~~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~ 76 (136)
T 1lu4_A 3 ERLQFTATT-LSG--APFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSK 76 (136)
T ss_dssp GGGCCEEEB-TTS--CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCeEeec-CCC--CeecHHHhCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHH
Confidence 578999999 888 699999999999999999 9999999999999999999997 89999999986 7788888887
Q ss_pred cccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEe---cCCCCCCCHHHHHHHHHhh
Q psy224 439 PRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI---NDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 439 ~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~---~~~~~~~~~~~il~~l~~l 511 (547)
+ +++||++.|.+.++++.|++. ..|+++|+|++|+++ .+. |.. +.+++.+.|+++
T Consensus 77 ~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~-~~~~~~g~~----~~~~l~~~l~~l 134 (136)
T 1lu4_A 77 Y-------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTST-FVNNPTAAM----SQDELSGRVAAL 134 (136)
T ss_dssp H-------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEE-EECCSSSCC----CHHHHHHHHHHC
T ss_pred c-------CCCceEEECCchhHHHhcCCC------CCCEEEEECCCCcEE-EEEcCCCcc----CHHHHHHHHHHH
Confidence 6 889999999999999999987 589999999999999 775 333 467777777754
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-20 Score=167.45 Aligned_cols=141 Identities=22% Similarity=0.288 Sum_probs=117.6
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhhC---CcEEEEEeCCC---
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKKI---NTQVIACSTDS--- 428 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~---~~~vi~is~d~--- 428 (547)
+.|+++|+|++.+ .+| .+++++++||++||+|| ++|||+ |+.++|.|++++++|+++ ++++++|+.|+
T Consensus 11 ~~G~~~p~f~l~~-~~g---~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d 85 (172)
T 2k6v_A 11 LLNPKPVDFALEG-PQG---PVRLSQFQDKVVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERD 85 (172)
T ss_dssp EEEEEECCCEEEC-SSS---EEEGGGSTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTC
T ss_pred ccCCCCCCeEEEc-CCC---CCcHHHhCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCC
Confidence 3788899999999 777 79999999999999999 999997 999999999999999875 79999999874
Q ss_pred -hhhHHHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCcccCC---------CcceeEEEEEcCCCcEEEEEecCC
Q psy224 429 -HFSHLAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNEET---------GIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~~~---------g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
++..++|.+++ +++||++.|.+ .++++.|++..... ....|++|||| +|+|++.+.+..
T Consensus 86 ~~~~~~~~~~~~-------~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~ 157 (172)
T 2k6v_A 86 PPEVADRYAKAF-------HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDK 157 (172)
T ss_dssp CHHHHHHHHHHH-------CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHH
T ss_pred CHHHHHHHHHHh-------CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCC
Confidence 56778888876 89999999987 68999999853211 12469999999 999999996554
Q ss_pred CCCCCHHHHHHHHHhh
Q psy224 496 PVGRSVDETLRLVQAF 511 (547)
Q Consensus 496 ~~~~~~~~il~~l~~l 511 (547)
..+.+++++.|+++
T Consensus 158 --~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 158 --AEATDRVVADLQAL 171 (172)
T ss_dssp --HTCHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHh
Confidence 22567888877754
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=159.29 Aligned_cols=135 Identities=14% Similarity=0.241 Sum_probs=116.3
Q ss_pred cCCCCC-CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCCh-hhHHH
Q psy224 357 LEKPAP-EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSH-FSHLA 434 (547)
Q Consensus 357 ~g~~~p-~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~ 434 (547)
+|+++| +|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.|.. +..++
T Consensus 5 ~G~~~p~~f~l~~-~~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~ 80 (152)
T 2lja_A 5 SGNPSAASFSYPD-ING--KTVSLADLKGKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWEN 80 (152)
T ss_dssp TTCCCSSSCEEEE-TTT--EEEESTTTTTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHH
T ss_pred cCCCCCcccEeec-CCC--CEeeHHHcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHH
Confidence 899999 999999 889 699999999999999999 999999999999999999999988999999999864 56677
Q ss_pred HhhccccCCCCCCcce-eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDMAI-PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~f-p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.++. ++++ +++.|.+.++.+.|++. .+|+++|||++|++++.+.+.. +.+++.+.|+.+.
T Consensus 81 ~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~~ 142 (152)
T 2lja_A 81 MVTKD-------QLKGIQLHMGTDRTFMDAYLIN------GIPRFILLDRDGKIISANMTRP----SDPKTAEKFNELL 142 (152)
T ss_dssp HHHHH-------TCCSEEEECSSCTHHHHHTTCC------SSCCEEEECTTSCEEESSCCCT----TCHHHHHHHHHHH
T ss_pred HHHhc-------CCCCceeecCcchhHHHHcCcC------CCCEEEEECCCCeEEEccCCCC----CHHHHHHHHHHHh
Confidence 77765 5564 67888889999999997 5899999999999999875433 3456667776655
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-21 Score=173.18 Aligned_cols=139 Identities=19% Similarity=0.261 Sum_probs=116.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHH-HHHHHh-hCCcEEEEEeCCCh-hhHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD-RAEEFK-KINTQVIACSTDSH-FSHL 433 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~-~~~~~~-~~~~~vi~is~d~~-~~~~ 433 (547)
+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|.+ ++++++ +.++++++|+.|.. +..+
T Consensus 9 ~g~~~p~f~l~~-~~g--~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~ 84 (159)
T 2ls5_A 9 IGEMAPDFTITL-TDG--KQVTLSSLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVL 84 (159)
Confidence 899999999999 888 699999999999999999 9999999999999998 999998 78999999998864 4456
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|.+++ +++||++.|.+.++++.|++.. ..+|+++|||++|+|++.+.+. .. .+++++++.|++..
T Consensus 85 ~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~----~~~P~~~lid~~G~i~~~~~g~-~~-~~l~~~l~~l~~~~ 150 (159)
T 2ls5_A 85 AFAKST-------GVTYPLGLDPGADIFAKYALRD----AGITRNVLIDREGKIVKLTRLY-NE-EEFASLVQQINEML 150 (159)
Confidence 666654 8999999999999999999642 1479999999999999988552 22 24566666655544
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-19 Score=153.90 Aligned_cols=130 Identities=18% Similarity=0.258 Sum_probs=113.9
Q ss_pred CCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHHHh
Q psy224 358 EKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLAWC 436 (547)
Q Consensus 358 g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~~ 436 (547)
|.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+ +++++.|+.|. .+..++|.
T Consensus 2 ~~~~p~~~~~~-~~g--~~~~l~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~ 75 (136)
T 1zzo_A 2 VPAQLQFSAKT-LDG--HDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFV 75 (136)
T ss_dssp CCGGGCCEEEB-TTS--CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHH
T ss_pred CCCCCCccccc-CCC--CEeeHHHhCCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHH
Confidence 56789999999 888 699999999999999999 9999999999999999999987 89999999875 67778888
Q ss_pred hccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 437 NIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 437 ~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++ ++ +||++.|.+.++.+.|++. .+|+++|+|++|+++ .+.+.. +.+++.+.|+++
T Consensus 76 ~~~-------~~~~~~~~~d~~~~~~~~~~i~------~~P~~~~id~~g~i~-~~~g~~----~~~~l~~~l~~~ 133 (136)
T 1zzo_A 76 NKY-------PVKTFTQLADTDGSVWANFGVT------QQPAYAFVDPHGNVD-VVRGRM----SQDELTRRVTAL 133 (136)
T ss_dssp HHT-------TCTTSEEEECTTCHHHHHTTCC------SSSEEEEECTTCCEE-EEESCC----CHHHHHHHHHHH
T ss_pred HHc-------CCCceEEEEcCCcHHHHHcCCC------CCceEEEECCCCCEE-EEecCC----CHHHHHHHHHHH
Confidence 776 78 9999999999999999987 589999999999999 776654 356666666654
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=159.02 Aligned_cols=120 Identities=18% Similarity=0.288 Sum_probs=105.4
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-Chhh
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~ 431 (547)
.+|+++|+|++.+ . +| +.++++++ +||++||+|| ++|||+|+.++|.|++++++ ++++++|+.| ..+.
T Consensus 23 ~~G~~~P~f~l~~-~~~~g--~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~~ 94 (168)
T 2b1k_A 23 LIGKPVPKFRLES-LDNPG--QFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQK 94 (168)
T ss_dssp TTTSBCCCCEEEE-SSSTT--CEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHH
T ss_pred ccCCcCCCeEeec-ccCCC--cEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChHH
Confidence 4899999999999 7 77 68999885 8999999999 99999999999999988765 8999999975 5677
Q ss_pred HHHHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 432 HLAWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.++|.+++ +++|| ++.|.+.++++.|++. .+|++||||++|++++.+.|..+
T Consensus 95 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~ 147 (168)
T 2b1k_A 95 AISWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDLN 147 (168)
T ss_dssp HHHHHHHH-------CCCCSEEEEETTCHHHHHHTCC------SSSEEEEECTTSBEEEEEESCCC
T ss_pred HHHHHHHc-------CCCCceeeECcchHHHHHcCcc------ccCEEEEECCCCeEEEEEeCCCC
Confidence 78888876 88998 5788899999999998 58999999999999999977654
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-19 Score=155.44 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=103.7
Q ss_pred cCCCCCC-eeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCC-hhhHH
Q psy224 357 LEKPAPE-FEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDS-HFSHL 433 (547)
Q Consensus 357 ~g~~~p~-~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~-~~~~~ 433 (547)
+++.+|+ |++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++ .++++++|+.|. .+..+
T Consensus 3 ~~~~~P~~f~l~~-~~g--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~ 78 (144)
T 1i5g_A 3 LKKFFPYSTNVLK-GAA--ADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK 78 (144)
T ss_dssp TTTSCSSCSEEEE-TTE--EEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred hhhhCCCceEEEc-CCC--CEecHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH
Confidence 6789999 99999 888 699999999999999999 99999999999999999999985 689999999984 66777
Q ss_pred HHhhccccCCCCCCcceeeec-CCChHHHHHhCCcccCCCcceeEEEEEc-CCCcEEEEE
Q psy224 434 AWCNIPRNKGGLGDMAIPILS-DKSMSIARSYGVLNEETGIPYRGLFIID-DKQNLRQIT 491 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~-D~~~~~~~~~~v~~~~~g~~~p~~~lid-~~G~v~~~~ 491 (547)
+|.+++. -..||++. |.+.++++.|++. .+|+++||| ++|+|++.+
T Consensus 79 ~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 79 DYYAKMP------WLALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp HHHTTCS------SEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHhCC------ccccccCchHHHHHHHHHcCCC------CCCEEEEEECCCCcEEecc
Confidence 7777641 24677665 5668999999987 589999999 999999876
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=153.38 Aligned_cols=118 Identities=15% Similarity=0.251 Sum_probs=101.9
Q ss_pred cCCCCCC-eeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCC-hhhHH
Q psy224 357 LEKPAPE-FEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDS-HFSHL 433 (547)
Q Consensus 357 ~g~~~p~-~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~-~~~~~ 433 (547)
+|+.+|+ |++.+ .+| .+++++++||++||+|| ++|||+|+.++|.|++++++|++ .++++++|+.|. .+..+
T Consensus 4 ~~~~~P~~f~l~~-~~g---~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~ 78 (146)
T 1o8x_A 4 LDKYLPGIEKLRR-GDG---EVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFA 78 (146)
T ss_dssp GGGTSTTCCEEEE-TTE---EEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHH
T ss_pred hHhhCCCceEEEc-CCC---CCcHHHhCCCEEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHH
Confidence 6888999 99998 766 79999999999999999 99999999999999999999984 789999999984 56667
Q ss_pred HHhhccccCCCCCCcceeeec-CCChHHHHHhCCcccCCCcceeEEEEEc-CCCcEEEEE
Q psy224 434 AWCNIPRNKGGLGDMAIPILS-DKSMSIARSYGVLNEETGIPYRGLFIID-DKQNLRQIT 491 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~-D~~~~~~~~~~v~~~~~g~~~p~~~lid-~~G~v~~~~ 491 (547)
+|.+++. ..+||++. |.+.++++.|++. .+|+++||| ++|+|++.+
T Consensus 79 ~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 79 GYFAKMP------WLAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp HHHTTCS------SEECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHHCC------ceeeccchhhHHHHHHHHhCCC------CCCEEEEEECCCCeEEEec
Confidence 7776541 24677665 6678999999987 589999999 999999876
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=157.70 Aligned_cols=127 Identities=13% Similarity=0.265 Sum_probs=107.3
Q ss_pred eeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC------hhhHHHHhhc
Q psy224 365 EGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------HFSHLAWCNI 438 (547)
Q Consensus 365 ~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------~~~~~~~~~~ 438 (547)
++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|.+++++|+..+++|++|+.|. .+...+|.++
T Consensus 22 ~l~~-~~g--~~~~~~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~ 97 (164)
T 2h30_A 22 TMKT-ADN--RPASVYLKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAG 97 (164)
T ss_dssp TCEE-TTS--SBGGGGCCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTT
T ss_pred ccCC-CCC--CEeeHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHh
Confidence 6677 788 589999999999999999 99999999999999999999998999999999753 3445555554
Q ss_pred cccCCCCCCcc-eeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 439 PRNKGGLGDMA-IPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 439 ~~~~~~~~~~~-fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+ +++ |++..|.+.++++.|++. .+|+++|||++|+++..+.|.. +.+++.+.|+++.
T Consensus 98 ~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~~~ 155 (164)
T 2h30_A 98 L-------NYPKLPVVTDNGGTIAQNLNIS------VYPSWALIGKDGDVQRIVKGSI----NEAQALALIRNPN 155 (164)
T ss_dssp S-------CCTTSCEEECTTCHHHHHTTCC------SSSEEEEECTTSCEEEEEESCC----CHHHHHHHHHCTT
T ss_pred C-------CCCcceEEEcCchHHHHHcCCC------ccceEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHH
Confidence 3 666 899999999999999997 5899999999999999997655 4567777777654
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=154.98 Aligned_cols=133 Identities=11% Similarity=0.205 Sum_probs=110.0
Q ss_pred ccCCCCCCeeeccccCC------ceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-C
Q psy224 356 ALEKPAPEFEGQAVVNG------QFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-S 428 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G------~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~ 428 (547)
.+|+.+|+|++.+ .+| +++.+++++++||++||+|| ++|||+|..+++.|++++++ .++++++|+.+ .
T Consensus 9 ~~g~~~p~f~l~~-~~g~~~~~~~~~~~~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~~~~~ 83 (156)
T 1kng_A 9 LIGRPAPQTALPP-LEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYKDA 83 (156)
T ss_dssp ---CBCCCCCBCC-CTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEESCC
T ss_pred HhCCCCCCceeee-ccCcccccccCceechHHhCCCEEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeEEEEEECCCC
Confidence 4899999999999 777 22489999999999999999 99999999999999998876 46999999975 5
Q ss_pred hhhHHHHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~ 507 (547)
.+..++|.+++ +++|| ++.|.+.++++.|++. .+|++||||++|+++..+.|..+ .+++.+.
T Consensus 84 ~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~g~~~----~~~l~~~ 146 (156)
T 1kng_A 84 ADNARRFLGRY-------GNPFGRVGVDANGRASIEWGVY------GVPETFVVGREGTIVYKLVGPIT----PDNLRSV 146 (156)
T ss_dssp HHHHHHHHHHH-------CCCCSEEEEETTSHHHHHTTCC------SSCEEEEECTTSBEEEEEESCCC----HHHHHHT
T ss_pred HHHHHHHHHHc-------CCCCceeeeCchhHHHHhcCcC------ccCeEEEEcCCCCEEEEEeCCCC----HHHHHHH
Confidence 67778888876 89999 8889999999999998 58999999999999999876653 3444444
Q ss_pred HHh
Q psy224 508 VQA 510 (547)
Q Consensus 508 l~~ 510 (547)
|++
T Consensus 147 l~~ 149 (156)
T 1kng_A 147 LLP 149 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.3e-18 Score=148.65 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=100.3
Q ss_pred cCCCCCCe-eeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeCCC-hhhHH
Q psy224 357 LEKPAPEF-EGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACSTDS-HFSHL 433 (547)
Q Consensus 357 ~g~~~p~~-~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~d~-~~~~~ 433 (547)
+|+.+|+| ++.+ .+| .+++++++||++||+|| ++|||+|+.++|.|.+++++|+ +.++++++|+.|. .+..+
T Consensus 4 ~g~~~p~~~~l~~-~~g---~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~ 78 (144)
T 1o73_A 4 LAKYLPGATNLLS-KSG---EVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFH 78 (144)
T ss_dssp GGGTSCTTCCBBC-TTS---CBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred hhhhCccceEeec-CCC---cCcHHHhCCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH
Confidence 78899997 9998 777 79999999999999999 9999999999999999999998 4789999999985 45666
Q ss_pred HHhhccccCCCCCCcceeeec-CCChHHHHHhCCcccCCCcceeEEEEEc-CCCcEEEEE
Q psy224 434 AWCNIPRNKGGLGDMAIPILS-DKSMSIARSYGVLNEETGIPYRGLFIID-DKQNLRQIT 491 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~-D~~~~~~~~~~v~~~~~g~~~p~~~lid-~~G~v~~~~ 491 (547)
+|.+++. ...+|+.. |.+.++++.|++. .+|+++||| ++|+|++.+
T Consensus 79 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 79 DYYGKMP------WLALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHTTCS------SEECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHhCC------ceEeeccchhHHHHHHHHcCCC------CCCEEEEEECCCCeEEecc
Confidence 7766541 24566554 5568899999997 589999999 899999766
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-18 Score=155.40 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=101.2
Q ss_pred ccCCCCCCe-eeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCCh-hhH
Q psy224 356 ALEKPAPEF-EGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSH-FSH 432 (547)
Q Consensus 356 ~~g~~~p~~-~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~-~~~ 432 (547)
.+|+.+|+| ++.+ .+| .+++++++||++||+|| ++|||+|+.++|.|.+++++|++ ++++|++|+.|.. +..
T Consensus 23 ~vG~~~P~f~~l~~-~~g---~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~ 97 (165)
T 3s9f_A 23 GVAKHLGEALKLRK-QAD---TADMDSLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDF 97 (165)
T ss_dssp HHHHHHHHTSCEEE-TTE---EECSGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHH
T ss_pred hhcccCCcceeeec-CCC---cccHHHcCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHH
Confidence 388999999 8988 777 89999999999999999 99999999999999999999986 7899999999864 566
Q ss_pred HHHhhccccCCCCCCcceeeecCCC-hHHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEE
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKS-MSIARSYGVLNEETGIPYRGLFIIDDK-QNLRQIT 491 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~-~~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~ 491 (547)
++|.++.. -..+|+..+.. .++++.|++. .+|+++|||++ |+|+...
T Consensus 98 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 98 NAYYAKMP------WLSIPFANRNIVEALTKKYSVE------SIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp HHHHTTCS------SEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHHhCC------CcccccCchhHHHHHHHHcCCC------CCCEEEEEeCCCCEEEecc
Confidence 77776541 24566655433 8999999997 58999999998 9999876
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-18 Score=152.73 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=97.8
Q ss_pred CCCCeeeccccCCceeeEeccC-CCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCC-hhhHHH
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQ-YKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDS-HFSHLA 434 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~-~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~-~~~~~~ 434 (547)
.+|+|++.+ .+| +.+++++ ++|| ++||+|| ++|||+|+.++|.|++++++|++ .++++++|+.|. .+..++
T Consensus 3 ~~p~~~l~~-~~g--~~~~l~~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~ 78 (143)
T 2lus_A 3 FIQGIKLVK-KNR--CEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQ 78 (143)
Confidence 579999999 888 6999999 8999 9999999 99999999999999999999953 589999999984 455566
Q ss_pred HhhccccCCCCCCccee---eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 435 WCNIPRNKGGLGDMAIP---ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp---~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
|.+++ +++|+ +..|.+.++++.|++. .+|+++|||++|+|++.+
T Consensus 79 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 125 (143)
T 2lus_A 79 YMMES-------HGDWLAIPYRSGPASNVTAKYGIT------GIPALVIVKKDGTLISMN 125 (143)
Confidence 66554 66655 4456668899999987 589999999999999987
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=112.68 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=87.8
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
.+++++..+ .+| ........+||++||+|| ++|||+|....|.+.+++++|+ .++.++.|+.+
T Consensus 5 ~~~~l~~~~-~~~--~~~~~~~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~------------ 67 (126)
T 2l57_A 5 GIKQINFQS-INV--VENLEEAKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE------------ 67 (126)
T ss_dssp CSSCTTTTC-CSE--ESSTTTCCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT------------
T ss_pred ccCCCCccc-cch--hHHHHHHhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC------------
Confidence 455666666 565 233345557899999999 9999999999999999999887 57999999865
Q ss_pred ccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 440 RNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|.+.++++.|++. .+|+++++|++|+++..+.|.. +.+++.+.|++..
T Consensus 68 --------------~d~~~~~~~~~~v~------~~Pt~~~~~~~G~~~~~~~G~~----~~~~l~~~l~~~~ 116 (126)
T 2l57_A 68 --------------EEKNIDLAYKYDAN------IVPTTVFLDKEGNKFYVHQGLM----RKNNIETILNSLG 116 (126)
T ss_dssp --------------SSHHHHHHHHTTCC------SSSEEEEECTTCCEEEEEESCC----CHHHHHHHHHHHC
T ss_pred --------------CCchHHHHHHcCCc------ceeEEEEECCCCCEEEEecCCC----CHHHHHHHHHHHh
Confidence 13346788899987 5899999999999999887654 4567777777654
|
| >4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=118.25 Aligned_cols=148 Identities=20% Similarity=0.270 Sum_probs=112.6
Q ss_pred ccCCCCCC--eeecc--c--------cCCceeeEeccCC--CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHH-hhCCc
Q psy224 356 ALEKPAPE--FEGQA--V--------VNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEF-KKINT 419 (547)
Q Consensus 356 ~~g~~~p~--~~l~~--~--------~~G~~~~~~l~~~--~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~-~~~~~ 419 (547)
.+|+++|. +++.- + .-|.++++++++. +||.+||+++|+.++|.|.. ++|.+.+.++++ +++|+
T Consensus 27 ~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGv 106 (199)
T 4h86_A 27 LVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEV 106 (199)
T ss_dssp TTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCC
T ss_pred HhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCC
Confidence 48999994 43321 0 0144577888876 79999999999999999987 599999999876 77887
Q ss_pred -EEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC---cceeEEEEEcCCCcEEEEEecCC
Q psy224 420 -QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG---IPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 420 -~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g---~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+|++||+|+++...+|.+..... ....+++++|.+.++++.+|+..+..+ ++.|..+||| ||+|.+.++.+.
T Consensus 107 d~I~ciSVND~FVm~AW~k~~~~~---~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~vE~~ 182 (199)
T 4h86_A 107 DQVIVVTVDNPFANQAWAKSLGVK---DTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAAKETN 182 (199)
T ss_dssp CEEEEEESSCHHHHHHHHHHTTCC---CCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEEECSS
T ss_pred cEEEEEEcCCHHHHHHHHHHhccc---ccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEEEeCC
Confidence 79999999999999999875211 145799999999999999998754332 3457899998 999999997543
Q ss_pred C---C-CCCHHHHHHH
Q psy224 496 P---V-GRSVDETLRL 507 (547)
Q Consensus 496 ~---~-~~~~~~il~~ 507 (547)
+ . ..+.+.+|+.
T Consensus 183 pg~~~~vS~ae~vL~~ 198 (199)
T 4h86_A 183 PGTDVTVSSVESVLAH 198 (199)
T ss_dssp TTTCCSTTSHHHHHTT
T ss_pred CCCCCcccCHHHHHhc
Confidence 2 1 1245666543
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.8e-12 Score=122.40 Aligned_cols=109 Identities=11% Similarity=0.146 Sum_probs=78.3
Q ss_pred HHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCceEEecc-cCCCCHHHHHHHHHHHHH
Q psy224 219 LQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHIT-IQNLGVTKLFVALCEGII 297 (547)
Q Consensus 219 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~gl~-~~~~~~~~l~ra~~Egia 297 (547)
.++|+.+.+ ..+ .+.+++++... . .|+..++|++....+.++++. ..+ +++|++|+++|+++
T Consensus 134 ~le~~a~~l-g~~-~~el~~la~~~----------~----~p~~~~~~c~vfa~s~v~~l~~~g~-~~~di~~av~e~Va 196 (270)
T 1hux_A 134 FLDVMANIL-EVK-VSDLAELGAKS----------T----KRVAISSTCTVFAESEVISQLSKGT-DKIDIIAGIHRSVA 196 (270)
T ss_dssp HHHHHHHHH-TCC-TTTHHHHHTTC----------C----SCCCCCCCSHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCC-HHHHHHHHhhC----------C----CCCCcccccchhHhHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 459999864 222 33445553210 1 466667776533335566665 444 89999999999999
Q ss_pred HHHHHhhhhhhhhhcC-CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 298 NNIHDIMNRSVLHRSG-INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 298 ~~~~~~~~~~~l~~~g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
+.+...++ ..+ .++|+++||+ ++|+.|+|+++++++.|+.+++.++.
T Consensus 197 ~~i~~~~~-----~~~~~~~i~~~GG~-a~n~~~~~~~~~~lg~~v~~p~~~~~ 244 (270)
T 1hux_A 197 SRVIGLAN-----RVGIVKDVVMTGGV-AQNYGVRGALEEGLGVEIKTSPLAQY 244 (270)
T ss_dssp HHHHHHHH-----TTCCCSSEEEESGG-GGCHHHHHHHHHHHCSCEECCGGGGG
T ss_pred HHHHHHHh-----cCCCCCeEEEeCcc-ccCHHHHHHHHHHHCCCeEeCCCcch
Confidence 99854443 345 4789999997 99999999999999999999887775
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-13 Score=116.55 Aligned_cols=116 Identities=14% Similarity=0.181 Sum_probs=87.9
Q ss_pred cCCCCCCee-eccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 357 LEKPAPEFE-GQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 357 ~g~~~p~~~-l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+..+|+|. +.+ .++ ....+++++||++||+|| ++||++|....+.+ .++.++++ ++.++.|+.+...
T Consensus 6 ~~~~~~~f~~~~~-~~~--~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~-- 77 (134)
T 2fwh_A 6 QTQTHLNFTQIKT-VDE--LNQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND-- 77 (134)
T ss_dssp ----CCCCEECCS-HHH--HHHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC--
T ss_pred ccccCCCcEEecC-HHH--HHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCc--
Confidence 677788887 544 444 356677788999999999 99999999999988 88888775 5999999886421
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHh
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR--QITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~--~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|.+.++++.|++. .+|+++++|++|+++ ..+.|.. +.+++.+.|+.
T Consensus 78 ----------------------~~~~~l~~~~~v~------~~Pt~~~~d~~G~~v~~~~~~G~~----~~~~l~~~l~~ 125 (134)
T 2fwh_A 78 ----------------------AQDVALLKHLNVL------GLPTILFFDGQGQEHPQARVTGFM----DAETFSAHLRD 125 (134)
T ss_dssp ----------------------HHHHHHHHHTTCC------SSSEEEEECTTSCBCGGGCBCSCC----CHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHcCCC------CCCEEEEECCCCCEeeeeeeeecc----CHHHHHHHHHh
Confidence 2346788899987 589999999999998 5665554 46788888887
Q ss_pred hH
Q psy224 511 FQ 512 (547)
Q Consensus 511 l~ 512 (547)
++
T Consensus 126 ~~ 127 (134)
T 2fwh_A 126 RQ 127 (134)
T ss_dssp C-
T ss_pred cC
Confidence 76
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-12 Score=115.40 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=86.3
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCccee
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP 451 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp 451 (547)
+.+++++.+||++||+||.++|||+|..+.|.+ .++.+.+. .++.++.|..+... +++++
T Consensus 38 ~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~----------------~~~~~ 100 (154)
T 2ju5_A 38 EALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKN----------------HQPEE 100 (154)
T ss_dssp HHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSC----------------CCCHH
T ss_pred HHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcccc----------------CCChh
Confidence 467788888999999999789999999999999 66655443 46888888776532 23444
Q ss_pred eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 452 ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 452 ~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+ .|.+.++++.|++. .+|+++|+|++|+++..+ |.. ..+.+++++.|+++-
T Consensus 101 ~-~~~~~~l~~~~~v~------~~Pt~~~~d~~G~~~~~~-G~~--~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 101 Q-RQKNQELKAQYKVT------GFPELVFIDAEGKQLARM-GFE--PGGGAAYVSKVKSAL 151 (154)
T ss_dssp H-HHHHHHHHHHTTCC------SSSEEEEECTTCCEEEEE-CCC--TTCHHHHHHHHHHHH
T ss_pred h-HhhHHHHHHHcCCC------CCCEEEEEcCCCCEEEEe-cCC--CCCHHHHHHHHHHHH
Confidence 3 46678999999998 589999999999999988 665 235677888777653
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=101.54 Aligned_cols=96 Identities=13% Similarity=0.265 Sum_probs=78.4
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeec
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILS 454 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~ 454 (547)
...+++++++|++||+|| ++||++|....|.+.+++++|++ .+.++.|..|.
T Consensus 42 ~~~~l~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------------------- 93 (141)
T 3hxs_A 42 HSKEWKYLGDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDK-------------------------- 93 (141)
T ss_dssp CCCCCCCCCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTT--------------------------
T ss_pred chhHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCC--------------------------
Confidence 578888889999999999 99999999999999999999875 47887776543
Q ss_pred CCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 455 DKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 455 D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.++++.|++. .+|+++++|++|+++ .+.|.. +.+++.+.|+++
T Consensus 94 --~~~~~~~~~v~------~~Pt~~~~~~~g~~~-~~~G~~----~~~~l~~~l~~~ 137 (141)
T 3hxs_A 94 --EPELARDFGIQ------SIPTIWFVPMKGEPQ-VNMGAL----SKEQLKGYIDKV 137 (141)
T ss_dssp --CHHHHHHTTCC------SSSEEEEECSSSCCE-EEESCC----CHHHHHHHHHHT
T ss_pred --CHHHHHHcCCC------CcCEEEEEeCCCCEE-EEeCCC----CHHHHHHHHHHH
Confidence 45788899988 589999999999998 554544 456777776654
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-12 Score=116.61 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=79.2
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.+.++..+||++||+|| ++||++|+...+.+ .++.+.+++ ++.++.|+.|............. ......+..
T Consensus 39 ~~~~a~~~gk~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~---~~~~~~~~~ 113 (172)
T 3f9u_A 39 GMEYARQHNKPVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIME---NGTERTLRT 113 (172)
T ss_dssp HHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEEE---TTEEEEEEE
T ss_pred HHHHHHHcCCeEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhhh---cchhhhhhh
Confidence 35556668999999999 99999999864333 455554543 79999999886433211111100 000223334
Q ss_pred ecCCChHH-HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 453 LSDKSMSI-ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 453 l~D~~~~~-~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.|....+ .+.|++. .+|+++|+|++|+++..+.|..+ +.+++++.|++.
T Consensus 114 ~~~~~~~~~~~~~~v~------~~Pt~~lid~~G~~~~~~~G~~~---~~~~l~~~l~~~ 164 (172)
T 3f9u_A 114 VGDKWSYLQRVKFGAN------AQPFYVLIDNEGNPLNKSYAYDE---DISKYINFLQTG 164 (172)
T ss_dssp HHHHHHHHHHHHHSCC------CSSEEEEECTTSCBSSCCBCSCC---CHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHcCCC------CcceEEEECCCCCEEeeccCCCC---CHHHHHHHHHHH
Confidence 44434444 5889998 58999999999999998876663 255666665543
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=99.91 Aligned_cols=101 Identities=11% Similarity=0.162 Sum_probs=79.2
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHH--HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFS--DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~--~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.+..+||++||+|| ++||++|....|.|. ++.+++++ ++.++.|+.+. .|.
T Consensus 24 ~~~~~~k~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~ 76 (133)
T 3fk8_A 24 AGKRTHKPTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN-------------------------FDR 76 (133)
T ss_dssp HHHHHTCCEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT-------------------------TTS
T ss_pred HHHhcCCcEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc-------------------------ccc
Confidence 33346899999999 999999999999999 99988864 68999988753 244
Q ss_pred ChHHHHHhCC---cccCCCcceeEEEEEcCCCcEEEEEecCC-CC--CCCHHHHHHHHHhhH
Q psy224 457 SMSIARSYGV---LNEETGIPYRGLFIIDDKQNLRQITINDL-PV--GRSVDETLRLVQAFQ 512 (547)
Q Consensus 457 ~~~~~~~~~v---~~~~~g~~~p~~~lid~~G~v~~~~~~~~-~~--~~~~~~il~~l~~l~ 512 (547)
+.++++.|++ . .+|+++++|++|+++..+.+.. .. ....+++.+.|+.+.
T Consensus 77 ~~~l~~~~~v~~~~------~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 77 NLELSQAYGDPIQD------GIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp SHHHHHHTTCGGGG------CSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred hHHHHHHhCCccCC------ccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 6788899998 6 5899999999999999986632 21 235667777776653
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=99.68 Aligned_cols=106 Identities=16% Similarity=0.313 Sum_probs=80.2
Q ss_pred CCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhh
Q psy224 358 EKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCN 437 (547)
Q Consensus 358 g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~ 437 (547)
...+|+++. .++ +.++....+||++||+|| ++||++|....|.+.++++++++ ++.++.|+.|
T Consensus 21 ~~~~~~~~~---~~~--~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d---------- 83 (128)
T 3ul3_B 21 FKKVPRLQQ---NGS--NIINGVNMKNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLD---------- 83 (128)
T ss_dssp -----CCCC---CCC--SSSSBTTSCCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGG----------
T ss_pred hccCCcccc---CCc--cHHHHHHccCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECC----------
Confidence 345666653 345 356777778999999999 99999999999999999999974 5888887643
Q ss_pred ccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 438 IPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 438 ~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+.+++++|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+
T Consensus 84 ------------------~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~ 126 (128)
T 3ul3_B 84 ------------------KNESLARKFSVK------SLPTIILL-KNKTMLARKDHFV----SSNDLIALIK 126 (128)
T ss_dssp ------------------GCHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSCC----CHHHHHHHHT
T ss_pred ------------------CCHHHHHHcCCC------CcCEEEEE-ECCEEEEEecCCC----CHHHHHHHHH
Confidence 235788899988 58999999 6999999886544 4567666664
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-10 Score=98.62 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=75.3
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.+++++.+||++||+|| ++|||+|....|.+ .++.+.++ .++.++.|..+.
T Consensus 19 ~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~------------------------ 72 (130)
T 2kuc_A 19 ALKRAEVEDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEK------------------------ 72 (130)
T ss_dssp HHHHHHHHSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHHH-HHSEEEEECSSS------------------------
T ss_pred HHHHHHhcCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHHh-cCeEEEEEecCC------------------------
Confidence 45556667999999999 99999999999998 55554443 356666665543
Q ss_pred ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 453 LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 453 l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+..+++.|++. .+|+++++|++|+++..+.|.. ..+++.+.|+++.
T Consensus 73 --~~~~~~~~~~~v~------~~Pt~~~~d~~G~~~~~~~G~~----~~~~l~~~l~~~~ 120 (130)
T 2kuc_A 73 --GEGVELRKKYGVH------AYPTLLFINSSGEVVYRLVGAE----DAPELLKKVKLGV 120 (130)
T ss_dssp --TTHHHHHHHTTCC------SSCEEEEECTTSCEEEEEESCC----CHHHHHHHHHHHH
T ss_pred --cchHHHHHHcCCC------CCCEEEEECCCCcEEEEecCCC----CHHHHHHHHHHHH
Confidence 2356788999987 5899999999999999887655 3567777777654
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-10 Score=92.11 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=69.7
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
+++.++|++||+|| |+||++|....|.+.++.+++. ++.++.|..| .+.
T Consensus 15 l~~~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d----------------------------~~~ 63 (105)
T 3zzx_A 15 LNEAGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVD----------------------------ECE 63 (105)
T ss_dssp HHHTTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETT----------------------------TCH
T ss_pred HHhcCCCEEEEEEE-CCCCCCccCCCcchhhhhhccC--CeEEEEEecc----------------------------cCH
Confidence 34456899999999 9999999999999999988775 4666655443 346
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++++.|+|. .+||.+++ ++|+++..+.|. +.+++.+.+++
T Consensus 64 ~l~~~~~V~------~~PT~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k 103 (105)
T 3zzx_A 64 DIAQDNQIA------CMPTFLFM-KNGQKLDSLSGA-----NYDKLLELVEK 103 (105)
T ss_dssp HHHHHTTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHH
T ss_pred HHHHHcCCC------eecEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHh
Confidence 788999998 58988777 799999999762 45677776654
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=9.8e-10 Score=91.81 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=71.4
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+.++|+++|+|| ++|||+|....|.+.+++++++ ++.++.|..+. .+.+
T Consensus 20 ~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------~~~~ 69 (111)
T 2pu9_C 20 KAAGDKPVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKT 69 (111)
T ss_dssp TTCTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHH
T ss_pred HhcCCCEEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc---------------------------chHH
Confidence 3446899999999 9999999999999999998886 58888887762 2467
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++.|++. .+|+ ++++++|+++..+.|.. .+++.+.|+++
T Consensus 70 ~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~~-----~~~l~~~l~~~ 109 (111)
T 2pu9_C 70 LAKELGIR------VVPT-FKILKENSVVGEVTGAK-----YDKLLEAIQAA 109 (111)
T ss_dssp HHHHHCCS------BSSE-EEEESSSSEEEEEESSC-----HHHHHHHHHHH
T ss_pred HHHHcCCC------eeeE-EEEEeCCcEEEEEcCCC-----HHHHHHHHHHh
Confidence 88999988 5898 66779999999886542 45666666654
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=91.21 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=73.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++++++++ ++.++.|+.|. +.++++
T Consensus 16 ~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 65 (112)
T 2voc_A 16 SEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE----------------------------NQETAG 65 (112)
T ss_dssp SSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CCSHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHH
Confidence 7899999999 99999999999999999999875 68998887653 235778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.+++..
T Consensus 66 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~~ 104 (112)
T 2voc_A 66 KYGVM------SIPTLLVL-KDGEVVETSVGFK----PKEALQELVNKHL 104 (112)
T ss_dssp HTTCC------SBSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHTTS
T ss_pred HcCCC------cccEEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHHH
Confidence 89987 58999999 8999999887665 3567777766544
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=92.50 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=71.1
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
+++.++|++||+|| ++||++|....|.+.+++++|++ +.++.|..|. +.
T Consensus 26 l~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~----------------------------~~ 74 (116)
T 3qfa_C 26 LDAAGDKLVVVDFS-ATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDD----------------------------CQ 74 (116)
T ss_dssp HHHHTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTT----------------------------TH
T ss_pred HHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CH
Confidence 34447899999999 99999999999999999988864 8888887642 45
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++++.|++. .+|+++++ ++|+++..+.|. +.+++.+.|++
T Consensus 75 ~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~ 114 (116)
T 3qfa_C 75 DVASECEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINE 114 (116)
T ss_dssp HHHHHTTCC------SSSEEEEE-SSSSEEEEEESC-----CHHHHHHHHHH
T ss_pred HHHHHcCCc------cccEEEEE-eCCeEEEEEcCC-----CHHHHHHHHHH
Confidence 788899988 58998888 799999988654 34566666654
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3e-09 Score=92.51 Aligned_cols=89 Identities=12% Similarity=0.259 Sum_probs=71.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.+++++|++ ++.++.|.++. +.++++
T Consensus 37 ~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 86 (136)
T 2l5l_A 37 GDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEK----------------------------EQELAG 86 (136)
T ss_dssp CSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCC----------------------------CHHHHH
Confidence 4689999999 99999999999999999998864 48888877642 357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++|++|+++ .+.|.. +.+++.+.|+++.
T Consensus 87 ~~~v~------~~Pt~~~~~~~G~~~-~~~G~~----~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 87 AFGIR------SIPSILFIPMEGKPE-MAQGAM----PKASFKKAIDEFL 125 (136)
T ss_dssp HTTCC------SSCEEEEECSSSCCE-EEESCC----CHHHHHHHHHHHH
T ss_pred HcCCC------CCCEEEEECCCCcEE-EEeCCC----CHHHHHHHHHHHh
Confidence 89987 589999999999998 454544 4567777777655
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-09 Score=86.97 Aligned_cols=87 Identities=10% Similarity=0.164 Sum_probs=71.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.++++++ +.++.|+.|. +.++++
T Consensus 18 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~----------------------------~~~~~~ 67 (106)
T 3die_A 18 ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEGK-ADILKLDVDE----------------------------NPSTAA 67 (106)
T ss_dssp CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT----------------------------CHHHHH
T ss_pred cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCc----------------------------CHHHHH
Confidence 7899999999 999999999999999999998753 8888887642 356778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+.++++ +|+++..+.|.. +.+++.+.|++
T Consensus 68 ~~~v~------~~Pt~~~~~-~G~~~~~~~g~~----~~~~l~~~l~~ 104 (106)
T 3die_A 68 KYEVM------SIPTLIVFK-DGQPVDKVVGFQ----PKENLAEVLDK 104 (106)
T ss_dssp HTTCC------SBSEEEEEE-TTEEEEEEESCC----CHHHHHHHHHT
T ss_pred hCCCc------ccCEEEEEe-CCeEEEEEeCCC----CHHHHHHHHHH
Confidence 89988 589999995 999999886654 45677776654
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.7e-09 Score=87.72 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++||++|....|.+.++.++++..++.++.|..+. +.++++
T Consensus 20 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~ 70 (112)
T 3d6i_A 20 GDKLIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE----------------------------NSEISE 70 (112)
T ss_dssp TTCCEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc----------------------------CHHHHH
Confidence 4899999999 99999999999999999998765678888887753 246888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. .+++.+.|+++
T Consensus 71 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~ 107 (112)
T 3d6i_A 71 LFEIS------AVPYFIII-HKGTILKELSGAD-----PKEYVSLLEDC 107 (112)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEECSCC-----HHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-ECCEEEEEecCCC-----HHHHHHHHHHH
Confidence 89987 58998888 6999999886543 23455555544
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=95.05 Aligned_cols=112 Identities=7% Similarity=0.070 Sum_probs=84.3
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
.+..+++..+.+ ++++ .+.....++|++||+|| ++||++|....|.+.++++++.. ++.++.|..+
T Consensus 31 ~~~~~~~~~v~~-l~~~--~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~--------- 96 (148)
T 3p2a_A 31 CGHSLFDGEVIN-ATAE--TLDKLLQDDLPMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTE--------- 96 (148)
T ss_dssp TCCBTTCCCCEE-CCTT--THHHHTTCSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETT---------
T ss_pred cCCccccCCcee-cCHH--HHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECc---------
Confidence 455666776666 5552 44433347899999999 99999999999999999999864 4888887664
Q ss_pred hccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 437 NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+.++.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++-
T Consensus 97 -------------------~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~l 142 (148)
T 3p2a_A 97 -------------------AEPALSTRFRIR------SIPTIMLY-RNGKMIDMLNGAV----PKAPFDNWLDEQL 142 (148)
T ss_dssp -------------------TCHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSCC----CHHHHHHHHHHHH
T ss_pred -------------------CCHHHHHHCCCC------ccCEEEEE-ECCeEEEEEeCCC----CHHHHHHHHHHHh
Confidence 245788899988 58998888 5999999886654 4566666666543
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-09 Score=96.33 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=71.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.+++++|+++ +.++.|..| .+.++++
T Consensus 22 ~~k~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d----------------------------~~~~l~~ 71 (149)
T 3gix_A 22 AEKVLVLRFG-RDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVD----------------------------QTAVYTQ 71 (149)
T ss_dssp CSSEEEEEEE-CTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETT----------------------------TCCHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECC----------------------------cCHHHHH
Confidence 5899999999 999999999999999999888643 777777653 2356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEE---------EEEecCCCCCCCHHHHHHHHHhhHhhhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLR---------QITINDLPVGRSVDETLRLVQAFQFVAE 516 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~---------~~~~~~~~~~~~~~~il~~l~~l~~~~~ 516 (547)
.|++. .+|+++ ++++|+++ ..+.|. ..+.+++.+.|+++-..++
T Consensus 72 ~~~v~------~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~---~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 72 YFDIS------YIPSTV-FFFNGQHMKVDYGSPDHTKFVGS---FKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp HTTCC------SSSEEE-EEETTEEEEEECSSSCCSCEESC---CSSHHHHHHHHHHHHHHHH
T ss_pred HcCCC------ccCeEE-EEECCeEEEeecCCCCCCeEeee---cCCHHHHHHHHHHHHHHhh
Confidence 99987 589998 66799999 444441 1246777777777654343
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7.5e-10 Score=99.95 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=62.3
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
.+++++||++||+|| ++|||+|+.++|.|.+++++++ ++.++.|+.|.. .+..+++ .-
T Consensus 48 ~l~~~~~k~vvv~F~-A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~---~~~~~~~-------~~--------- 105 (167)
T 1z6n_A 48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGRA---EDDLRQR-------LA--------- 105 (167)
T ss_dssp HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHH---HHHTTTT-------TT---------
T ss_pred HHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCC---HHHHHHH-------HH---------
Confidence 467788999999999 9999999999999999998764 688888876532 2222221 10
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
.++. .+|+++++|++|+++..+ +..
T Consensus 106 ------~~v~------~iPt~i~~~~~G~~~~~~-g~~ 130 (167)
T 1z6n_A 106 ------LERI------AIPLVLVLDEEFNLLGRF-VER 130 (167)
T ss_dssp ------CSSC------CSSEEEEECTTCCEEEEE-ESS
T ss_pred ------cCCC------CcCeEEEECCCCCEEEEE-cCC
Confidence 1233 589999999999998877 443
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=7.8e-09 Score=86.52 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=72.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.+++++ .+.++.|+.+. +.++.+
T Consensus 24 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 73 (115)
T 1thx_A 24 AEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDP----------------------------NPTTVK 73 (115)
T ss_dssp CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTT----------------------------CHHHHH
T ss_pred CCceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998875 38888887653 346788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 74 ~~~v~------~~Pt~~~~-~~G~~~~~~~g~~----~~~~l~~~l~~~ 111 (115)
T 1thx_A 74 KYKVE------GVPALRLV-KGEQILDSTEGVI----SKDKLLSFLDTH 111 (115)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCC------ceeEEEEE-cCCEEEEEecCCC----CHHHHHHHHHHH
Confidence 99987 58999999 8999999886654 356676766654
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=6.2e-09 Score=86.04 Aligned_cols=87 Identities=17% Similarity=0.284 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.+++++ ++.++.|+.+. +.++++
T Consensus 18 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 67 (107)
T 1dby_A 18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE----------------------------SPNVAS 67 (107)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999998865 48888877643 357888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|++
T Consensus 68 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~ 104 (107)
T 1dby_A 68 EYGIR------SIPTIMVF-KGGKKCETIIGAVP----KATIVQTVEK 104 (107)
T ss_dssp HHTCC------SSCEEEEE-SSSSEEEEEESCCC----HHHHHHHHHH
T ss_pred HCCCC------cCCEEEEE-eCCEEEEEEeCCCC----HHHHHHHHHH
Confidence 99987 58998777 79999998876553 4556666554
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=98.93 E-value=3.8e-09 Score=88.05 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.+++++++ ++.++.|..| .+.++++
T Consensus 23 ~~k~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~----------------------------~~~~l~~ 71 (109)
T 3f3q_A 23 QDKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVD----------------------------ELGDVAQ 71 (109)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT----------------------------TCHHHHH
T ss_pred cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECC----------------------------CCHHHHH
Confidence 5899999999 9999999999999999999885 4777777653 2467888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|++++++ +|+++..+.|.. .+++.+.|++
T Consensus 72 ~~~v~------~~Pt~~~~~-~G~~~~~~~G~~-----~~~l~~~i~~ 107 (109)
T 3f3q_A 72 KNEVS------AMPTLLLFK-NGKEVAKVVGAN-----PAAIKQAIAA 107 (109)
T ss_dssp HTTCC------SSSEEEEEE-TTEEEEEEESSC-----HHHHHHHHHH
T ss_pred HcCCC------ccCEEEEEE-CCEEEEEEeCCC-----HHHHHHHHHh
Confidence 99988 589999997 999999986652 3566665554
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-09 Score=90.57 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=69.6
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.++|++||+|| ++|||+|....|.|.++.++|+ ++.++.|+.|. +.+++
T Consensus 36 ~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~ 84 (124)
T 1xfl_A 36 ESKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE----------------------------LKSVA 84 (124)
T ss_dssp HTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------SHHHH
T ss_pred hcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------CHHHH
Confidence 36899999999 9999999999999999998885 68888877642 45788
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+++
T Consensus 85 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 122 (124)
T 1xfl_A 85 SDWAIQ------AMPTFMFL-KEGKILDKVVGA-----KKDELQSTIAKH 122 (124)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred HHcCCC------ccCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHh
Confidence 899988 58997766 899999988652 345666666543
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-09 Score=88.80 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=71.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.|.+++++++. ++.++.|+.|. +.++++
T Consensus 30 ~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 79 (119)
T 1w4v_A 30 SETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDD----------------------------HTDLAI 79 (119)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTT----------------------------THHHHH
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998865 58888887643 356888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 80 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 117 (119)
T 1w4v_A 80 EYEVS------AVPTVLAM-KNGDVVDKFVGIK----DEDQLEAFLKKL 117 (119)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-eCCcEEEEEcCCC----CHHHHHHHHHHH
Confidence 99988 58999999 8999999886654 355666666543
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-09 Score=87.67 Aligned_cols=88 Identities=16% Similarity=0.291 Sum_probs=69.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.+++++ ++.++.|+.+. +.++++
T Consensus 22 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 71 (112)
T 1t00_A 22 NDKPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDE----------------------------NPGTAA 71 (112)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999998865 48888887643 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++ ++|+++..+.|..+ .+++.+.|+++
T Consensus 72 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~ 109 (112)
T 1t00_A 72 KYGVM------SIPTLNVY-QGGEVAKTIVGAKP----KAAIVRDLEDF 109 (112)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHTHHH
T ss_pred hCCCC------cccEEEEE-eCCEEEEEEeCCCC----HHHHHHHHHHH
Confidence 99987 58987777 79999998876553 45666665543
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-09 Score=87.27 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|+++|+|| ++|||+|....|.+.++.+++++ .+.++.|+.|. +.++++
T Consensus 16 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 65 (105)
T 1nsw_A 16 GDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE----------------------------NPETTS 65 (105)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcC----------------------------CHHHHH
Confidence 5789999999 99999999999999999988865 38888887543 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|++
T Consensus 66 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~ 102 (105)
T 1nsw_A 66 QFGIM------SIPTLILF-KGGRPVKQLIGYQ----PKEQLEAQLAD 102 (105)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHTTT
T ss_pred HcCCc------cccEEEEE-eCCeEEEEEecCC----CHHHHHHHHHH
Confidence 89987 58999999 8999999887655 34555555543
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-09 Score=89.78 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+.++|+++|+|| ++|||+|....|.+.+++++++ ++.++.|..+. .+.++
T Consensus 34 ~~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~---------------------------~~~~~ 83 (124)
T 1faa_A 34 AAGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTL 83 (124)
T ss_dssp HTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHH
T ss_pred hcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc---------------------------chHHH
Confidence 346899999999 9999999999999999998886 58888887652 14678
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++|++. .+|+ ++++++|+++..+.|.. .+++.+.|+++
T Consensus 84 ~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~~-----~~~l~~~i~~~ 122 (124)
T 1faa_A 84 AKELGIR------VVPT-FKILKENSVVGEVTGAK-----YDKLLEAIQAA 122 (124)
T ss_dssp HHHHCCS------SSSE-EEEEETTEEEEEEESSC-----HHHHHHHHHHH
T ss_pred HHHcCCC------eeeE-EEEEeCCcEEEEEcCCC-----HHHHHHHHHHh
Confidence 8899988 5898 55558999999886542 45666666654
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.3e-09 Score=85.73 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=71.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.+++++ .+.++.|..| .+.++++
T Consensus 20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~----------------------------~~~~~~~ 69 (109)
T 3tco_A 20 NNKLVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVD----------------------------ENQKIAD 69 (109)
T ss_dssp HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT----------------------------TCHHHHH
T ss_pred cCCeEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccc----------------------------cCHHHHH
Confidence 5899999999 99999999999999999998865 4777777653 3457788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|++
T Consensus 70 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~ 106 (109)
T 3tco_A 70 KYSVL------NIPTTLIF-VNGQLVDSLVGAV----DEDTLESTVNK 106 (109)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHH
T ss_pred hcCcc------cCCEEEEE-cCCcEEEeeeccC----CHHHHHHHHHH
Confidence 89988 58999999 8999999987655 35666666654
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.4e-09 Score=85.12 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=71.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.++++. ++.++.|+.+. +.++++
T Consensus 19 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 68 (107)
T 2i4a_A 19 ASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD----------------------------NPETPN 68 (107)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT----------------------------CCHHHH
T ss_pred CCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999999875 68888887653 236788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 69 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 106 (107)
T 2i4a_A 69 AYQVR------SIPTLMLV-RDGKVIDKKVGAL----PKSQLKAWVESA 106 (107)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHT
T ss_pred hcCCC------ccCEEEEE-eCCEEEEEecCCC----CHHHHHHHHHhc
Confidence 89987 58999999 8999999886654 456677766643
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=98.91 E-value=6.6e-09 Score=86.04 Aligned_cols=88 Identities=15% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.++++. ++.++.|..+. +.++++
T Consensus 19 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 68 (108)
T 2trx_A 19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAP 68 (108)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CTTHHH
T ss_pred cCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998865 47888776643 235778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 69 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 106 (108)
T 2trx_A 69 KYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN 106 (108)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCc------ccCEEEEE-eCCEEEEEEecCC----CHHHHHHHHHHh
Confidence 89987 58999999 7999999887655 345666666543
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=93.15 Aligned_cols=91 Identities=9% Similarity=0.109 Sum_probs=68.9
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
.+++.+||++||+|| ++||++|....|.+.++.++| ++.++.|..+ .+
T Consensus 34 ~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~----------------------------~~ 81 (133)
T 3cxg_A 34 VFSSTQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVD----------------------------IH 81 (133)
T ss_dssp HHTC-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETT----------------------------TC
T ss_pred HHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEecc----------------------------ch
Confidence 355667899999999 999999999999998887665 4677666543 24
Q ss_pred hHHHHHhCCcccCCCcceeEEEEE-cCCCc--EEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 458 MSIARSYGVLNEETGIPYRGLFII-DDKQN--LRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~li-d~~G~--v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.++++.|++. .+|+++++ |++|+ ++..+.|. +.+++.+.|+++
T Consensus 82 ~~l~~~~~v~------~~Pt~~~~~~~~g~g~~~~~~~G~-----~~~~l~~~l~~~ 127 (133)
T 3cxg_A 82 PKLNDQHNIK------ALPTFEFYFNLNNEWVLVHTVEGA-----NQNDIEKAFQKY 127 (133)
T ss_dssp HHHHHHTTCC------SSSEEEEEEEETTEEEEEEEEESC-----CHHHHHHHHHHH
T ss_pred HHHHHhcCCC------CCCEEEEEEecCCCeEEEEEEcCC-----CHHHHHHHHHHH
Confidence 6788899987 58999998 45666 88888654 246777777654
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=83.78 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....+.+.++.+++++ +.++.|+.|. +.++.+
T Consensus 15 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~----------------------------~~~~~~ 63 (104)
T 2e0q_A 15 SHEIAVVDFW-AEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE----------------------------NPDIAA 63 (104)
T ss_dssp HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999988864 8888887642 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. ..|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 64 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~ 101 (104)
T 2e0q_A 64 RYGVM------SLPTVIFF-KDGEPVDEIIGAV----PREEIEIRIKNL 101 (104)
T ss_dssp HTTCC------SSCEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred hCCcc------ccCEEEEE-ECCeEhhhccCCC----CHHHHHHHHHHH
Confidence 89987 58999999 8999999886654 345666666543
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.5e-09 Score=86.85 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=63.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++||++|....|.+.++.++|. ++.++.|..|. +.++++
T Consensus 17 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~----------------------------~~~l~~ 65 (105)
T 4euy_A 17 EQQLVLLFIK-TENCGVCDVMLRKVNYVLENYN--YVEKIEILLQD----------------------------MQEIAG 65 (105)
T ss_dssp CSSEEEEEEE-ESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECC----------------------------C-----
T ss_pred cCCCEEEEEe-CCCCcchHHHHHHHHHHHHHcC--CceEEEEECCC----------------------------CHHHHH
Confidence 5799999999 9999999999999999998884 68888877643 235667
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. .+|++++++ +|+++..+.|.. +.+++.+.|+++
T Consensus 66 ~~~v~------~~Pt~~~~~-~G~~~~~~~g~~----~~~~l~~~l~~~ 103 (105)
T 4euy_A 66 RYAVF------TGPTVLLFY-NGKEILRESRFI----SLENLERTIQLF 103 (105)
T ss_dssp ----C------CCCEEEEEE-TTEEEEEEESSC----CHHHHHHHHHTT
T ss_pred hcCCC------CCCEEEEEe-CCeEEEEEeCCc----CHHHHHHHHHHh
Confidence 88887 589999995 999999887655 456777776653
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.9e-09 Score=87.88 Aligned_cols=88 Identities=10% Similarity=0.114 Sum_probs=71.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.++++.+++.++.|+.|. +.++++
T Consensus 32 ~~k~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~----------------------------~~~~~~ 82 (121)
T 2j23_A 32 GDKVVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE----------------------------QSQIAQ 82 (121)
T ss_dssp SSSCEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998887678888887653 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+++
T Consensus 83 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 119 (121)
T 2j23_A 83 EVGIR------AMPTFVFF-KNGQKIDTVVGA-----DPSKLQAAITQH 119 (121)
T ss_dssp HHTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-ECCeEEeeEcCC-----CHHHHHHHHHHh
Confidence 99987 58998888 599999988654 345666666543
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=85.28 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=69.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+|++||+|| ++|||+|....|.+.++.++|++ ++.++.|+.|. +.++.+.
T Consensus 24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 73 (112)
T 1ep7_A 24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVAEA 73 (112)
T ss_dssp TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHHHH
T ss_pred CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc----------------------------hHHHHHH
Confidence 899999999 99999999999999999998865 68888887642 4578889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
|++. .+|+.+++ ++|+++..+.|. +.+++.+.|+++
T Consensus 74 ~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 109 (112)
T 1ep7_A 74 AGIT------AMPTFHVY-KDGVKADDLVGA-----SQDKLKALVAKH 109 (112)
T ss_dssp HTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred cCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHHH
Confidence 9987 58986666 799999988654 245666666554
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-08 Score=88.96 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=74.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.+++++ .+.++.|.++. +.++++
T Consensus 23 ~~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 72 (140)
T 3hz4_A 23 SKKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIAT----------------------------NPWTAE 72 (140)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCc----------------------------CHhHHH
Confidence 4799999999 99999999999999999999975 48888877532 357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhhh--cCccccCCccCCCc
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAE--HGEVCPAGWKPGSK 530 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~--~~~~~~~~w~~~~~ 530 (547)
.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+++-.... .....|.+|...-+
T Consensus 73 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 131 (140)
T 3hz4_A 73 KYGVQ------GTPTFKFF-CHGRPVWEQVGQIY----PSILKNAVRDMLQHGEECIRKSTPVGQDITGY 131 (140)
T ss_dssp HHTCC------EESEEEEE-ETTEEEEEEESSCC----HHHHHHHHHHHHHHHHHHHHTSBC--------
T ss_pred HCCCC------cCCEEEEE-eCCcEEEEEcCCCC----HHHHHHHHHHHhcccccCcccccccCccceee
Confidence 99988 58988888 79999988876653 4555555554432211 13456666654433
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.2e-09 Score=90.56 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.+++++ .+.++.|..| .+.++++
T Consensus 34 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~l~~ 83 (130)
T 2dml_A 34 SDGLWLVEFY-APWCGHCQRLTPEWKKAATALKD-VVKVGAVNAD----------------------------KHQSLGG 83 (130)
T ss_dssp CSSCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETT----------------------------TCHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCC----------------------------CCHHHHH
Confidence 4789999999 99999999999999999998865 3777777643 3467889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|++++++++|+++..+.|.. +.+++++.+.+.
T Consensus 84 ~~~v~------~~Pt~~~~~~~~~~~~~~~G~~----~~~~l~~~l~~~ 122 (130)
T 2dml_A 84 QYGVQ------GFPTIKIFGANKNKPEDYQGGR----TGEAIVDAALSA 122 (130)
T ss_dssp HHTCC------SSSEEEEESSCTTSCEECCSCC----SHHHHHHHHHHH
T ss_pred HcCCC------ccCEEEEEeCCCCeEEEeecCC----CHHHHHHHHHHH
Confidence 99988 5899999999988666664433 456666665543
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-09 Score=90.48 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++++++++ ++.++.|+.|.. .++++
T Consensus 39 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~----------------------------~~l~~ 88 (128)
T 2o8v_B 39 ADGAILVDFW-AEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP 88 (128)
T ss_dssp CSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTC----------------------------CTTSG
T ss_pred cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HHHHH
Confidence 5799999999 99999999999999999998865 488888877531 23456
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 89 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 126 (128)
T 2o8v_B 89 KYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN 126 (128)
T ss_dssp GGTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCC------ccCEEEEE-eCCEEEEEEcCCC----CHHHHHHHHHHh
Confidence 78887 58999999 8999999887654 356666666643
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=87.65 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=71.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh---CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK---INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+|++||+|| ++||++|....|.+.++++++++ .++.++.|..+. +.+
T Consensus 24 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~ 74 (133)
T 1x5d_A 24 SEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV----------------------------NQV 74 (133)
T ss_dssp SSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT----------------------------CCH
T ss_pred CCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC----------------------------CHH
Confidence 4789999999 99999999999999999999973 457777776542 357
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++.|++. .+|+++++++ |+++..+.|.. +.+++.+.|+++-
T Consensus 75 l~~~~~v~------~~Pt~~~~~~-g~~~~~~~G~~----~~~~l~~~l~~~~ 116 (133)
T 1x5d_A 75 LASRYGIR------GFPTIKIFQK-GESPVDYDGGR----TRSDIVSRALDLF 116 (133)
T ss_dssp HHHHHTCC------SSSEEEEEET-TEEEEEECSCC----SHHHHHHHHHHHH
T ss_pred HHHhCCCC------eeCeEEEEeC-CCceEEecCCC----CHHHHHHHHHHHh
Confidence 88999988 5899999986 88888886543 4567777666544
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=98.85 E-value=9.4e-09 Score=85.82 Aligned_cols=88 Identities=9% Similarity=0.123 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.+++. ++.++.|..+ .+.++++
T Consensus 18 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~----------------------------~~~~l~~ 66 (110)
T 2l6c_A 18 GLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSE----------------------------ARPELMK 66 (110)
T ss_dssp TCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGG----------------------------GCHHHHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCc----------------------------CCHHHHH
Confidence 5789999999 9999999999999998887764 5666666542 2456888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.++...
T Consensus 67 ~~~v~------~~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~~~~~~ 105 (110)
T 2l6c_A 67 ELGFE------RVPTLVFI-RDGKVAKVFSGIM----NPRELQALYASIH 105 (110)
T ss_dssp HTTCC------SSCEEEEE-ESSSEEEEEESCC----CHHHHHHHHHTC-
T ss_pred HcCCc------ccCEEEEE-ECCEEEEEEcCCC----CHHHHHHHHHHHh
Confidence 99988 58999999 8999999987655 4567777777654
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=90.56 Aligned_cols=88 Identities=10% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.|.+++++|+. ++.++.|+.|. +.++.+
T Consensus 63 ~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 112 (155)
T 2ppt_A 63 DDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQA----------------------------HPAVAG 112 (155)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------STHHHH
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCc----------------------------cHHHHH
Confidence 5789999999 99999999999999999999975 48888887752 246888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 113 ~~~i~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 150 (155)
T 2ppt_A 113 RHRIQ------GIPAFILF-HKGRELARAAGAR----PASELVGFVRGK 150 (155)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCC------cCCEEEEE-eCCeEEEEecCCC----CHHHHHHHHHHH
Confidence 99988 58999999 6999999887654 456676766654
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=86.43 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.++|++ +.++.|+.|. +.++.+
T Consensus 33 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~----------------------------~~~~~~ 81 (122)
T 2vlu_A 33 AKKLVVIDFT-ASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE----------------------------LKPIAE 81 (122)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred cCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC----------------------------CHHHHH
Confidence 5899999999 99999999999999999988864 8888887653 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++ ++|+++..+.|.. .+++.+.|+++
T Consensus 82 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~ 118 (122)
T 2vlu_A 82 QFSVE------AMPTFLFM-KEGDVKDRVVGAI-----KEELTAKVGLH 118 (122)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-eCCEEEEEEeCcC-----HHHHHHHHHHH
Confidence 89987 58987766 8999998886544 35565666544
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.6e-09 Score=88.02 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.|.++.+++ .++.++.|..+. +.++++
T Consensus 22 ~~~~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~----------------------------~~~~~~ 70 (118)
T 2f51_A 22 APGLVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK----------------------------NGNAAD 70 (118)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC----------------------------CHHHHH
Confidence 4899999999 999999999999999999888 578898887653 246788
Q ss_pred HhCCcccCCCcceeEEEEEcC---CCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDD---KQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~---~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
.|++. .+|+++++++ +|+++..+.|.. .+++.+.+++...
T Consensus 71 ~~~i~------~~Pt~~~~~~~~~~G~~~~~~~G~~-----~~~l~~~~~~~~~ 113 (118)
T 2f51_A 71 AYGVS------SIPALFFVKKEGNEIKTLDQFVGAD-----VSRIKADIEKFKH 113 (118)
T ss_dssp HTTCC------SSSEEEEEEEETTEEEEEEEEESCC-----HHHHHHHHHHHC-
T ss_pred hcCCC------CCCEEEEEeCCCCcceEEEeecCCC-----HHHHHHHHHHhhh
Confidence 99988 5899999975 499999986654 3556666665543
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=98.84 E-value=7.4e-09 Score=90.89 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.+++++++. ++.++.|..|.. .++++
T Consensus 22 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------------~~~~~ 71 (142)
T 1qgv_A 22 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV----------------------------PDFNK 71 (142)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC----------------------------CTTTT
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccC----------------------------HHHHH
Confidence 4899999999 99999999999999999999864 488888877631 12456
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC------CCCCHHHHHHHHHhhHhhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP------VGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~------~~~~~~~il~~l~~l~~~~ 515 (547)
.|++. .+|+++++ ++|+++....+... ...+.+++++.|+++...+
T Consensus 72 ~~~i~------~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 72 MYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp SSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred HcCCC------CCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 78887 58999999 48998876544311 1114677777777765443
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-08 Score=83.54 Aligned_cols=88 Identities=8% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++||++|....|.+.++.+++++ ++.++.|..+. +.++++
T Consensus 21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 70 (111)
T 3gnj_A 21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEE----------------------------EKTLFQ 70 (111)
T ss_dssp SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCc----------------------------ChhHHH
Confidence 4789999999 99999999999999999998864 48888877642 357888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 71 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~ 108 (111)
T 3gnj_A 71 RFSLK------GVPQILYF-KDGEYKGKMAGDV----EDDEVEQMIADV 108 (111)
T ss_dssp HTTCC------SSCEEEEE-ETTEEEEEEESSC----CHHHHHHHHHHH
T ss_pred hcCCC------cCCEEEEE-ECCEEEEEEeccC----CHHHHHHHHHHH
Confidence 99988 58999999 6999998886654 456666666543
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-08 Score=85.28 Aligned_cols=87 Identities=6% Similarity=0.097 Sum_probs=69.4
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
+.+||+|| ++||++|....|.+.++++++++.++.++.|.++. +.++++.|
T Consensus 23 ~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~~~~~ 73 (126)
T 1x5e_A 23 GDWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE----------------------------QPGLSGRF 73 (126)
T ss_dssp SEEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT----------------------------CHHHHHHT
T ss_pred CCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC----------------------------CHHHHHHc
Confidence 34899999 99999999999999999999987678888887542 34688899
Q ss_pred CCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 465 GVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 465 ~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++. .+|+++++ ++|++ ..+.|.. +.+++.+.|+++.
T Consensus 74 ~v~------~~Pt~~~~-~~G~~-~~~~G~~----~~~~l~~~l~~~~ 109 (126)
T 1x5e_A 74 IIN------ALPTIYHC-KDGEF-RRYQGPR----TKKDFINFISDKE 109 (126)
T ss_dssp TCC------SSSEEEEE-ETTEE-EECCSCC----CHHHHHHHHHTCG
T ss_pred CCc------ccCEEEEE-eCCeE-EEeecCC----CHHHHHHHHHHHh
Confidence 987 58999999 79995 4453433 5678888887665
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=98.83 E-value=7.5e-09 Score=87.28 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=68.9
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
+++.++|+++|+|| ++||++|....|.+.++++++ ++.++.|+.|. +.
T Consensus 28 l~~~~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~----------------------------~~ 75 (117)
T 2xc2_A 28 LEQHKNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK----------------------------LE 75 (117)
T ss_dssp HHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT----------------------------SH
T ss_pred HHhCCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc----------------------------cH
Confidence 34457899999999 999999999999999988776 78888887642 35
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++++.|++. .+|+.+++ ++|+++..+.| . +.+++.+.|++
T Consensus 76 ~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G-~----~~~~l~~~l~~ 115 (117)
T 2xc2_A 76 ETARKYNIS------AMPTFIAI-KNGEKVGDVVG-A----SIAKVEDMIKK 115 (117)
T ss_dssp HHHHHTTCC------SSSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHH
T ss_pred HHHHHcCCC------ccceEEEE-eCCcEEEEEeC-C----CHHHHHHHHHH
Confidence 678899987 58997766 79999998866 2 34566666654
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-08 Score=83.59 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=70.1
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++.++|+++|+|| ++|||+|....|.+.++.++++ ++.++.|..|. +.+
T Consensus 16 ~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~----------------------------~~~ 64 (105)
T 3m9j_A 16 DAAGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDD----------------------------CQD 64 (105)
T ss_dssp HHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETTT----------------------------CHH
T ss_pred HhcCCCeEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhhh----------------------------hHH
Confidence 3446899999999 9999999999999999999885 48888887542 356
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.+.|++. .+|+.+++ ++|+++..+.|. +.+++.+.|++
T Consensus 65 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~ 103 (105)
T 3m9j_A 65 VASESEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINE 103 (105)
T ss_dssp HHHHTTCC------BSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHH
T ss_pred HHHHcCCC------cCcEEEEE-ECCeEEEEEeCC-----CHHHHHHHHHH
Confidence 78889987 58999999 789999888655 24556555554
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=85.56 Aligned_cols=85 Identities=14% Similarity=0.202 Sum_probs=67.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.+++++ +.++.|..+. +.++++
T Consensus 29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~----------------------------~~~l~~ 77 (114)
T 2oe3_A 29 QNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDE----------------------------SPDIAK 77 (114)
T ss_dssp HCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CHHHHH
Confidence 5899999999 99999999999999999988864 8888887542 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|++. .+|+.+++ ++|+++..+.|.. .+++.+.|++
T Consensus 78 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~ 113 (114)
T 2oe3_A 78 ECEVT------AMPTFVLG-KDGQLIGKIIGAN-----PTALEKGIKD 113 (114)
T ss_dssp HTTCC------SBSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHT
T ss_pred HCCCC------cccEEEEE-eCCeEEEEEeCCC-----HHHHHHHHHh
Confidence 89987 58997776 8999999886543 3556565553
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.7e-09 Score=90.34 Aligned_cols=103 Identities=12% Similarity=0.128 Sum_probs=74.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||.|| |+||++|+...|.|.++.+++.+ .+.|+-|..|. .++++.
T Consensus 40 ~~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe----------------------------~~e~a~ 89 (160)
T 2av4_A 40 DERLVCIRFG-HDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITE----------------------------VPDFNT 89 (160)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------CCTTTT
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCC----------------------------CHHHHH
Confidence 4689999999 99999999999999999999864 36677766653 345667
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEE---------EEecCCCCCCCHHHHHHHHHhhHhhhhcCc---cccCCc
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQ---------ITINDLPVGRSVDETLRLVQAFQFVAEHGE---VCPAGW 525 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~---------~~~~~~~~~~~~~~il~~l~~l~~~~~~~~---~~~~~w 525 (547)
.|+|. ..||++++ ++|+.+. ...+..+ +-+++++.|+++--.+..|. .||.+.
T Consensus 90 ~y~V~------siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa~~---~k~~l~~~ie~~~r~a~~g~~~v~~p~~~ 154 (160)
T 2av4_A 90 MYELY------DPVSVMFF-YRNKHMMIDLGTGNNNKINWPMN---NKQEFIDIVETIFRGARKGRGLVISPKDY 154 (160)
T ss_dssp TTTCC------SSEEEEEE-ETTEEEEEECSSSCCSCBCSCCC---CHHHHHHHHHHHHHHHHTTCSEEECSSCC
T ss_pred HcCCC------CCCEEEEE-ECCEEEEEecCCCCcCeEEeecC---CHHHHHHHHHHHHHHhhcCCeEEECCCcc
Confidence 89988 58999888 5888874 3333332 34677777776655555543 456553
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.9e-09 Score=91.36 Aligned_cols=93 Identities=10% Similarity=0.119 Sum_probs=72.8
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
++.++.+||++||+|| ++||++|....|.+.++.++++ ++.++.|+.|.
T Consensus 39 ~~~~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~---------------------------- 87 (139)
T 3d22_A 39 LSEASRDGKIVLANFS-ARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDE---------------------------- 87 (139)
T ss_dssp HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------
T ss_pred HHHHhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcc----------------------------
Confidence 3334456999999999 9999999999999999998884 68998887752
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.++++.|++. .+|+++++ ++|+++..+.|. . .+++.+.|+++-
T Consensus 88 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-~----~~~l~~~l~~~~ 131 (139)
T 3d22_A 88 LSDFSASWEIK------ATPTFFFL-RDGQQVDKLVGA-N----KPELHKKITAIL 131 (139)
T ss_dssp SHHHHHHTTCC------EESEEEEE-ETTEEEEEEESC-C----HHHHHHHHHHHH
T ss_pred cHHHHHHcCCC------cccEEEEE-cCCeEEEEEeCC-C----HHHHHHHHHHHh
Confidence 35688899988 58998888 899999988665 2 355555555443
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-08 Score=82.50 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=69.6
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++.++|+++|+|| ++|||+|....|.+.++.++++ ++.++.|+.+. +.+
T Consensus 15 ~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~~ 63 (104)
T 2vim_A 15 NENKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ----------------------------NEE 63 (104)
T ss_dssp HTTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHH
T ss_pred HhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC----------------------------CHH
Confidence 4446899999999 9999999999999999998875 78888887752 346
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+++.|++. ..|+.+++ ++|+++..+.| . +.+++.+.|++
T Consensus 64 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G-~----~~~~l~~~l~~ 102 (104)
T 2vim_A 64 AAAKYSVT------AMPTFVFI-KDGKEVDRFSG-A----NETKLRETITR 102 (104)
T ss_dssp HHHHTTCC------SSSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHH
T ss_pred HHHHcCCc------cccEEEEE-eCCcEEEEEeC-C----CHHHHHHHHHh
Confidence 77889987 48997777 49999998865 2 34566666654
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-08 Score=82.50 Aligned_cols=88 Identities=11% Similarity=0.194 Sum_probs=71.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.+++++ ++.++.|+.+. +.++.+
T Consensus 17 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 66 (109)
T 2yzu_A 17 QHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDE----------------------------NPKTAM 66 (109)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCC----------------------------CHhHHH
Confidence 4789999999 99999999999999999998864 58888887643 346788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. ..|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 67 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~ 104 (109)
T 2yzu_A 67 RYRVM------SIPTVILF-KDGQPVEVLVGAQ----PKRNYQAKIEKH 104 (109)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHTT
T ss_pred hCCCC------cCCEEEEE-eCCcEeeeEeCCC----CHHHHHHHHHHH
Confidence 89987 58999999 8999999886654 456777777654
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=89.66 Aligned_cols=87 Identities=10% Similarity=0.178 Sum_probs=71.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.++++ ++.++.|..+. +.++++
T Consensus 31 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~----------------------------~~~l~~ 79 (153)
T 2wz9_A 31 AKSLLVVHFW-APWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG----------------------------VPEVSE 79 (153)
T ss_dssp TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC----------------------------CHHHHH
Confidence 5899999999 9999999999999999998873 68888887653 346888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|++++++ +|+++..+.|. ..+++.+.|+++-
T Consensus 80 ~~~v~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~l 117 (153)
T 2wz9_A 80 KYEIS------SVPTFLFFK-NSQKIDRLDGA-----HAPELTKKVQRHA 117 (153)
T ss_dssp HTTCC------SSSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHHS
T ss_pred HcCCC------CCCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHHHh
Confidence 99988 589999999 99999888653 3456777776654
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-10 Score=102.98 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=74.5
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.++.+..+||++||+|| ++|||+|....|.|.++.+.+.. ++.++.|++|.....
T Consensus 38 ~~~~~~~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~~----------------------- 92 (164)
T 1sen_A 38 GKKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEEP----------------------- 92 (164)
T ss_dssp HHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGSC-----------------------
T ss_pred HHHHHHhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCchH-----------------------
Confidence 45566668999999999 99999999999999998765543 567777777543210
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhhHh
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV------GRSVDETLRLVQAFQF 513 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~------~~~~~~il~~l~~l~~ 513 (547)
+.+.|++. +..+|+++++|++|+++..+.|.... ..+.+++++.|+++..
T Consensus 93 ----~~~~~~~~----~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~ 148 (164)
T 1sen_A 93 ----KDEDFSPD----GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE 148 (164)
T ss_dssp ----SCGGGCTT----CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred ----HHHHhccc----CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence 01123332 12489999999999999887665321 2467888888887653
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-08 Score=81.58 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+.++|+++|+|| ++|||+|....|.+.++.++++ .++.++.|+.+. +.++
T Consensus 17 ~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~----------------------------~~~~ 66 (106)
T 1xwb_A 17 KASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDE----------------------------CEDI 66 (106)
T ss_dssp HHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTT----------------------------CHHH
T ss_pred hcCCCEEEEEEE-CCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEeccc----------------------------hHHH
Confidence 346899999999 9999999999999999998886 368888887642 3567
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.+.|++. ..|+.+++ ++|+++..+.| . +.+++.+.|++
T Consensus 67 ~~~~~v~------~~Pt~~~~-~~G~~~~~~~g-~----~~~~l~~~i~~ 104 (106)
T 1xwb_A 67 AMEYNIS------SMPTFVFL-KNGVKVEEFAG-A----NAKRLEDVIKA 104 (106)
T ss_dssp HHHTTCC------SSSEEEEE-ETTEEEEEEES-C----CHHHHHHHHHH
T ss_pred HHHcCCC------cccEEEEE-cCCcEEEEEcC-C----CHHHHHHHHHH
Confidence 8889987 48986666 79999998865 3 34556666554
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-08 Score=82.91 Aligned_cols=85 Identities=8% Similarity=0.018 Sum_probs=67.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++||++|....|.+.++.+++. ++.++.|..+. +.++++
T Consensus 20 ~~~~v~v~f~-a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~----------------------------~~~~~~ 68 (107)
T 1gh2_A 20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ----------------------------CQGTAA 68 (107)
T ss_dssp TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred CCCEEEEEEE-CCCChhhHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------CHHHHH
Confidence 5899999999 9999999999999999998883 68888877643 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+.+++ ++|+++..+.|.. .+++.+.|++
T Consensus 69 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~ 104 (107)
T 1gh2_A 69 TNNIS------ATPTFQFF-RNKVRIDQYQGAD-----AVGLEEKIKQ 104 (107)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHH
T ss_pred hcCCC------cccEEEEE-ECCeEEEEEeCCC-----HHHHHHHHHH
Confidence 89987 58998888 7999999886632 2445555554
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=98.80 E-value=2.8e-08 Score=81.61 Aligned_cols=87 Identities=15% Similarity=0.228 Sum_probs=68.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|+++|+|| ++|||+|....|.+.++.+++++ ++.++.|+.+. +.++++
T Consensus 17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 66 (105)
T 1fb6_A 17 SEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDE----------------------------APGIAT 66 (105)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcc----------------------------hHHHHH
Confidence 4789999999 99999999999999999988865 47777776543 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+.+++ ++|+++..+.|..+ .+++.+.|++
T Consensus 67 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~----~~~l~~~l~~ 103 (105)
T 1fb6_A 67 QYNIR------SIPTVLFF-KNGERKESIIGAVP----KSTLTDSIEK 103 (105)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEEECCC----HHHHHHHHHH
T ss_pred hCCCC------cccEEEEE-eCCeEEEEEecCCC----HHHHHHHHHh
Confidence 89987 48997777 69999998876653 4556565554
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-08 Score=85.84 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.+++++++ ++.++.|..|. +.++++
T Consensus 36 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~~ 84 (125)
T 1r26_A 36 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN----------------------------NSEIVS 84 (125)
T ss_dssp SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHH
T ss_pred cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Confidence 6899999999 9999999999999999998884 68888887753 356888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.| . +.+++.+.|+++
T Consensus 85 ~~~v~------~~Pt~~i~-~~G~~~~~~~G-~----~~~~l~~~l~~~ 121 (125)
T 1r26_A 85 KCRVL------QLPTFIIA-RSGKMLGHVIG-A----NPGMLRQKLRDI 121 (125)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-eCCeEEEEEeC-C----CHHHHHHHHHHH
Confidence 99988 58997766 89999988866 2 345666666654
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.5e-09 Score=89.57 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=70.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++ ++||+|| ++||++|....|.+.+++++++ +.++.|+.+...+.. . .|.+.++++
T Consensus 31 ~~-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~-~------------------~d~~~~l~~ 86 (135)
T 3emx_A 31 QG-DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGER-E------------------LSAARLEMN 86 (135)
T ss_dssp TS-SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHH-H------------------HHHHHHHHH
T ss_pred CC-cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhh-h------------------hhhhHHHHH
Confidence 44 8999999 9999999999999999988774 889999886543321 1 133578899
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|++. .+|+.++++ +|+++..+.|..+ .+.+.+.++++.
T Consensus 87 ~~~v~------~~Pt~~~~~-~G~~v~~~~G~~~----~~~~~~~i~~~~ 125 (135)
T 3emx_A 87 KAGVE------GTPTLVFYK-EGRIVDKLVGATP----WSLKVEKAREIY 125 (135)
T ss_dssp HHTCC------SSSEEEEEE-TTEEEEEEESCCC----HHHHHHHHHHHC
T ss_pred HcCCc------eeCeEEEEc-CCEEEEEEeCCCC----HHHHHHHHHHHh
Confidence 99998 589777776 9999999977654 334444455444
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-08 Score=87.13 Aligned_cols=88 Identities=8% Similarity=0.047 Sum_probs=65.0
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
..-+++++||+|| ++||++|....|.+.+++++|+..++.++.|..+. +.+
T Consensus 22 ~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~ 72 (137)
T 2dj0_A 22 ERDKRVTWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR----------------------------YTD 72 (137)
T ss_dssp HHSTTSCEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT----------------------------CHH
T ss_pred hcCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc----------------------------CHH
Confidence 3345679999999 99999999999999999999976678888876643 233
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~ 497 (547)
+++.|++........+|+++++ ++|+++..+.+..+.
T Consensus 73 ~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~~~ 109 (137)
T 2dj0_A 73 VSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQIDKK 109 (137)
T ss_dssp HHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEESCBCSS
T ss_pred HHHHccCcccCCcCCCCEEEEE-ECCEEEEEecCcCch
Confidence 4555555310001148999999 799999988776553
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=88.83 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++|++||+|| ++||++|....|.+.++++++++++ +.++.|..+ .+.++
T Consensus 33 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~----------------------------~~~~~ 83 (140)
T 2dj1_A 33 DKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT----------------------------SASML 83 (140)
T ss_dssp TCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTT----------------------------TCHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCc----------------------------ccHHH
Confidence 5799999999 9999999999999999999998764 666655432 23678
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++.|++. .+|+++++ ++|+ +..+.+.. +.+++.+.|+++-
T Consensus 84 ~~~~~v~------~~Pt~~~~-~~G~-~~~~~g~~----~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 84 ASKFDVS------GYPTIKIL-KKGQ-AVDYDGSR----TQEEIVAKVREVS 123 (140)
T ss_dssp HHHTTCC------SSSEEEEE-ETTE-EEECCSCC----CHHHHHHHHHHHH
T ss_pred HHHCCCC------ccCeEEEE-ECCc-EEEcCCCC----CHHHHHHHHHHhc
Confidence 8999988 58999999 6898 54554433 5677777777654
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-08 Score=83.59 Aligned_cols=87 Identities=16% Similarity=0.271 Sum_probs=69.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.++|+ ++.++.|..|. +.++.+
T Consensus 27 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~~~~~ 75 (118)
T 2vm1_A 27 TGKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDE----------------------------LKDVAE 75 (118)
T ss_dssp HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEccc----------------------------CHHHHH
Confidence 4899999999 9999999999999999998876 68888887642 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+.+++ ++|+++..+.|. +.+++.+.|+++-
T Consensus 76 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 76 AYNVE------AMPTFLFI-KDGEKVDSVVGG-----RKDDIHTKIVALM 113 (118)
T ss_dssp HTTCC------SBSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHH
T ss_pred HcCCC------cCcEEEEE-eCCeEEEEecCC-----CHHHHHHHHHHHh
Confidence 89987 58998877 799999888652 3466666666543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-08 Score=98.66 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=70.6
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
...++|++||+|| ++||++|+...|.+.++.+++++ ++.++.|.+|. +.+
T Consensus 22 ~~~~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~ 71 (287)
T 3qou_A 22 EQSMTTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDA----------------------------EQM 71 (287)
T ss_dssp TTTTTSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTT----------------------------CHH
T ss_pred HhcCCCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCcc----------------------------CHH
Confidence 3345899999999 99999999999999999999974 48888887653 247
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+++.|+|. .+|+++++ ++|+++..+.|..+ .+.+.+.++
T Consensus 72 ~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~~~----~~~l~~~l~ 110 (287)
T 3qou_A 72 IAAQFGLR------AIPTVYLF-QNGQPVDGFQGPQP----EEAIRALLD 110 (287)
T ss_dssp HHHTTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHH
T ss_pred HHHHcCCC------CCCeEEEE-ECCEEEEEeeCCCC----HHHHHHHHH
Confidence 88899988 58999999 69999998876653 334444444
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=83.45 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=62.3
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.++|++||+|| ++|||+|....+.+.++.++++ ++.++.|+.|. +.++.
T Consensus 24 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~ 72 (113)
T 1ti3_A 24 GSQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE----------------------------LKAVA 72 (113)
T ss_dssp TSSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------CHHHH
T ss_pred hcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc----------------------------cHHHH
Confidence 45899999999 9999999999999999998875 68888887642 35677
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
+.|++. .+|+.+++ ++|+++..+.|
T Consensus 73 ~~~~v~------~~Pt~~~~-~~G~~~~~~~g 97 (113)
T 1ti3_A 73 EEWNVE------AMPTFIFL-KDGKLVDKTVG 97 (113)
T ss_dssp HHHHCS------STTEEEEE-ETTEEEEEEEC
T ss_pred HhCCCC------cccEEEEE-eCCEEEEEEec
Confidence 889987 58998888 69999998876
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.7e-10 Score=94.68 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=72.6
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCccee
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP 451 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp 451 (547)
+.++++..+||++||+|| ++||++|....|.+ .++.+.++. ++.++.|..+..
T Consensus 10 ~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~---------------------- 65 (130)
T 2lst_A 10 EALALAQAHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTP---------------------- 65 (130)
Confidence 467788888999999999 99999999999998 777776653 466666655421
Q ss_pred eecCCChHHHHHhCCcccCCCcceeEEEEEcC-CCcE--EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 452 ILSDKSMSIARSYGVLNEETGIPYRGLFIIDD-KQNL--RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 452 ~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~-~G~v--~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+.++.+.|++. .+|+++++|+ +|++ +..+.|..+. +++.+.|+++
T Consensus 66 ----~~~~~~~~~~v~------~~Pt~~~~d~~~G~~~~~~~~~G~~~~----~~l~~~l~~~ 114 (130)
T 2lst_A 66 ----EGQELARRYRVP------GTPTFVFLVPKAGAWEEVGRLFGSRPR----AEFLKELRQV 114 (130)
Confidence 235677888987 5899999995 6999 7777665542 3444444443
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=84.83 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=66.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++|||+|+...|.+.+++++++ ..++.+..+...+. +...++.+
T Consensus 28 ~~~~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~----------------------~~~~~~~~ 81 (118)
T 1zma_A 28 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQL----------------------NDLQAFRS 81 (118)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGH----------------------HHHHHHHH
T ss_pred CCCeEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcH----------------------HHHHHHHH
Confidence 5789999999 9999999999999999998774 45666666543221 12356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.|++. .+|++++++ +|+++..+.|.. ..+++.+.|
T Consensus 82 ~~~i~------~~Pt~~~~~-~G~~~~~~~G~~----~~~~l~~~l 116 (118)
T 1zma_A 82 RYGIP------TVPGFVHIT-DGQINVRCDSSM----SAQEIKDFA 116 (118)
T ss_dssp HHTCC------SSCEEEEEE-TTEEEEECCTTC----CHHHHHHHH
T ss_pred HcCCC------CCCeEEEEE-CCEEEEEecCCC----CHHHHHHHh
Confidence 99998 589999994 999988775544 345665554
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.72 E-value=4.7e-08 Score=83.68 Aligned_cols=90 Identities=8% Similarity=0.040 Sum_probs=68.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh----CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK----INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~----~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
.+|+++|+|| ++||++|....|.+.++.++|.. .++.++.|.++ .+.
T Consensus 32 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~----------------------------~~~ 82 (127)
T 3h79_A 32 PEKDVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE----------------------------KYP 82 (127)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT----------------------------TCH
T ss_pred CCCCEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc----------------------------ccH
Confidence 4799999999 99999999999999999998863 23566665543 346
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCCCCCCCHHHHHHHHHhh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~~~~~~~~~il~~l~~l 511 (547)
++++.|++. .+|+++++++.+++. ..+.|. ++.+++++.|+++
T Consensus 83 ~l~~~~~v~------~~Pt~~~~~~g~~~~~~~~~G~----~~~~~l~~~i~~~ 126 (127)
T 3h79_A 83 DVIERMRVS------GFPTMRYYTRIDKQEPFEYSGQ----RYLSLVDSFVFQN 126 (127)
T ss_dssp HHHHHTTCC------SSSEEEEECSSCSSSCEECCSC----CCHHHHHHHHHHH
T ss_pred hHHHhcCCc------cCCEEEEEeCCCCCCceEecCC----ccHHHHHHHHHhc
Confidence 788999998 589999998777653 334332 3678888877653
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=6.5e-08 Score=80.77 Aligned_cols=86 Identities=7% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.++++ ++.++.|..+. +.++++
T Consensus 25 ~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~----------------------------~~~~~~ 73 (112)
T 1syr_A 25 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE----------------------------VSEVTE 73 (112)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------THHHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC----------------------------CHHHHH
Confidence 6899999999 9999999999999999998875 58888887653 236778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++ ++|+++..+.|. +.+++.+.|+++
T Consensus 74 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 110 (112)
T 1syr_A 74 KENIT------SMPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEKY 110 (112)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHTT
T ss_pred HcCCC------cccEEEEE-ECCcEEEEEeCC-----CHHHHHHHHHHh
Confidence 89987 58986666 699999888654 346666666643
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-08 Score=81.99 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++|++||+|| ++||++|....|.+.++.+++.+. ++.++.|..+ .+.++
T Consensus 20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~----------------------------~~~~l 70 (111)
T 3uvt_A 20 AEGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT----------------------------AERNI 70 (111)
T ss_dssp HSSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETT----------------------------TCHHH
T ss_pred cCCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecc----------------------------ccHhH
Confidence 3789999999 999999999999999998877543 5666666543 23567
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++.|++. .+|+.+++ ++|+++..+.|.. +.+++.+.|++
T Consensus 71 ~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~ 109 (111)
T 3uvt_A 71 CSKYSVR------GYPTLLLF-RGGKKVSEHSGGR----DLDSLHRFVLS 109 (111)
T ss_dssp HHHTTCC------SSSEEEEE-ETTEEEEEECSCC----SHHHHHHHHHH
T ss_pred HHhcCCC------cccEEEEE-eCCcEEEeccCCc----CHHHHHHHHHh
Confidence 8889987 58998888 7999998886553 46677777654
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=85.09 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=70.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.+++++++. ++.++.|..+. +.++++
T Consensus 20 ~~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 69 (122)
T 3aps_A 20 GKTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQA----------------------------YPQTCQ 69 (122)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcC----------------------------CHHHHH
Confidence 4789999999 99999999999999999999875 68888887753 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|++++++++|++ ..+.|......+.+++.+.|+++-
T Consensus 70 ~~~v~------~~Pt~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~l~~~l 112 (122)
T 3aps_A 70 KAGIK------AYPSVKLYQYERAK-KSIWEEQINSRDAKTIAALIYGKL 112 (122)
T ss_dssp HTTCC------SSSEEEEEEEEGGG-TEEEEEEECCSCHHHHHHHHHHHH
T ss_pred HcCCC------ccceEEEEeCCCcc-ceeeccccCcCCHHHHHHHHHHHH
Confidence 99988 58999999888774 444343111124566766666543
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-08 Score=88.26 Aligned_cols=92 Identities=9% Similarity=0.161 Sum_probs=64.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++|++||+|| ++||++|....|.+.+++++++.. ++.++.|..+.. ..+.
T Consensus 24 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~----------------------------~~~~ 74 (133)
T 2dj3_A 24 PKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN----------------------------DITN 74 (133)
T ss_dssp TTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTS----------------------------CCCC
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcC----------------------------HHHH
Confidence 4899999999 999999999999999999999753 577777665421 1122
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEE-EEecCCCCCCCHHHHHHHHHhhH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQ-ITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~-~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.|++. .+|++++++++|++.. .+.+.. .+.+++.+.|++.-
T Consensus 75 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~gg~---~~~~~l~~~l~~~~ 117 (133)
T 2dj3_A 75 DQYKVE------GFPTIYFAPSGDKKNPIKFEGGN---RDLEHLSKFIDEHA 117 (133)
T ss_dssp SSCCCS------SSSEEEEECTTCTTSCEECCSSC---CSTTHHHHHHHHHS
T ss_pred hhcCCC------cCCEEEEEeCCCcccceEecCCC---cCHHHHHHHHHHhc
Confidence 467777 5899999998776543 233221 23456666666543
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=98.68 E-value=6.4e-08 Score=81.78 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.++++. ++.++.|+.+. +.++++
T Consensus 29 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 78 (121)
T 2i1u_A 29 SNKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDT----------------------------NPETAR 78 (121)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999988864 58888887643 346788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+++++ ++|+++..+.|.. ..+++.+.|++
T Consensus 79 ~~~i~------~~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~~l~~ 115 (121)
T 2i1u_A 79 NFQVV------SIPTLILF-KDGQPVKRIVGAK----GKAALLRELSD 115 (121)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHTCS
T ss_pred hcCCC------cCCEEEEE-ECCEEEEEecCCC----CHHHHHHHHHH
Confidence 89987 58998888 5999998886655 34566666554
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-08 Score=92.04 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|+...|.+.+++++|++ .+.++.|..|. +.++++
T Consensus 29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 78 (222)
T 3dxb_A 29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAP 78 (222)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CTTTGG
T ss_pred cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCC----------------------------CHHHHH
Confidence 5799999999 99999999999999999999875 38888887753 123456
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|++++++ +|+++..+.|.. +.+++.+.|+.+-
T Consensus 79 ~~~v~------~~Pt~~~~~-~G~~~~~~~G~~----~~~~l~~~l~~~l 117 (222)
T 3dxb_A 79 KYGIR------GIPTLLLFK-NGEVAATKVGAL----SKGQLKEFLDANL 117 (222)
T ss_dssp GGTCC------SBSEEEEEE-TTEEEEEEESCC----CHHHHHHHHHHHS
T ss_pred HcCCC------cCCEEEEEE-CCeEEEEecccc----ChHHHHHHHHhhc
Confidence 78887 589988885 899999887654 4567777777654
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-08 Score=84.00 Aligned_cols=87 Identities=15% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCCeEEEEEEeCCCCC--------------CcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCc
Q psy224 383 KGQYVVLFFYPLDFTF--------------VCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDM 448 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp--------------~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~ 448 (547)
++|++||+|| ++||+ +|....|.+.++.++|++ ++.++.|..|.
T Consensus 20 ~~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~-------------------- 77 (123)
T 1oaz_A 20 ADGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ-------------------- 77 (123)
T ss_dssp CSSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTS--------------------
T ss_pred CCCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCC--------------------
Confidence 5899999999 99999 999999999999988865 47888887653
Q ss_pred ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 449 AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 449 ~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.+++++|++. .+|+++++ ++|+++..+.|.. +.+++.+.|++
T Consensus 78 --------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~ 120 (123)
T 1oaz_A 78 --------NPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDA 120 (123)
T ss_dssp --------CTTTGGGGTCC------BSSEEEEE-ESSSEEEEEESCC----CHHHHHHHHTT
T ss_pred --------CHHHHHHcCCC------ccCEEEEE-ECCEEEEEEeCCC----CHHHHHHHHHH
Confidence 23456788987 58999999 8999999887655 35666666654
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-08 Score=94.43 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=78.6
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccC
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNK 442 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 442 (547)
+..+.+ +++ ..+.....++|++||+|| ++||++|....|.+.+++++++. .+.++.|.++.
T Consensus 96 ~~~v~~-l~~--~~f~~~~~~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~-------------- 156 (210)
T 3apq_A 96 DPEIIT-LER--REFDAAVNSGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGD-------------- 156 (210)
T ss_dssp CTTSEE-CCH--HHHHHHHHHSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT--------------
T ss_pred CCceEE-ecH--HHHHHHHccCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCc--------------
Confidence 334444 444 244333346899999999 99999999999999999998864 48888876543
Q ss_pred CCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 443 GGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 443 ~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.++++.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++-
T Consensus 157 --------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~~l 201 (210)
T 3apq_A 157 --------------DRMLCRMKGVN------SYPSLFIF-RSGMAAVKYNGDR----SKESLVAFAMQHV 201 (210)
T ss_dssp --------------CHHHHHHTTCC------SSSEEEEE-CTTSCCEECCSCC----CHHHHHHHHHHHH
T ss_pred --------------cHHHHHHcCCC------cCCeEEEE-ECCCceeEecCCC----CHHHHHHHHHHhC
Confidence 34677889987 58999999 8999988876543 4567777776543
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=98.64 E-value=4.7e-08 Score=84.52 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=69.2
Q ss_pred CCCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDF--TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.++++||+|| +.| |++|+...|.|.++.++|..+.++|+-|.+ |.++++
T Consensus 33 ~~~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdv----------------------------De~~~l 83 (140)
T 2qgv_A 33 QAPDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADL----------------------------EQSEAI 83 (140)
T ss_dssp TCSSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCH----------------------------HHHHHH
T ss_pred CCCCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEEC----------------------------CCCHHH
Confidence 4567889999 998 999999999999999998653366655433 235789
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+|+|. .+||.+++ ++|+++.+..|..+ -+++.+.|+++
T Consensus 84 A~~ygV~------sIPTlilF-k~G~~v~~~~G~~~----k~~l~~~i~~~ 123 (140)
T 2qgv_A 84 GDRFGAF------RFPATLVF-TGGNYRGVLNGIHP----WAELINLMRGL 123 (140)
T ss_dssp HHHHTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHH
T ss_pred HHHcCCc------cCCEEEEE-ECCEEEEEEecCCC----HHHHHHHHHHH
Confidence 9999998 69999999 79999999987654 34555555543
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=81.53 Aligned_cols=88 Identities=11% Similarity=0.159 Sum_probs=69.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++.+||+|| ++||++|....|.+.++.++|+. ++.++.|..+. +.++++
T Consensus 49 ~~~~vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 98 (140)
T 1v98_A 49 GAPLTLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDE----------------------------HPGLAA 98 (140)
T ss_dssp CCCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CHHHHH
T ss_pred cCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCC----------------------------CHHHHH
Confidence 3334899999 99999999999999999998875 48888887653 246788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 99 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~~ 136 (140)
T 1v98_A 99 RYGVR------SVPTLVLF-RRGAPVATWVGAS----PRRVLEERLRPY 136 (140)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HCCCC------ccCEEEEE-eCCcEEEEEeCCC----CHHHHHHHHHHH
Confidence 89987 58999988 6999999887655 355666666654
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=80.40 Aligned_cols=87 Identities=9% Similarity=0.183 Sum_probs=65.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh----CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK----INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~----~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
++|+++|+|| ++||++|....|.+.+++++|+. .++.++.|.++.. . +.
T Consensus 24 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------~-----~~---- 76 (121)
T 2djj_A 24 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN-----------------D-----VP---- 76 (121)
T ss_dssp TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS-----------------C-----CS----
T ss_pred CCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc-----------------c-----cc----
Confidence 6899999999 99999999999999999999986 2678888876531 1 11
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNL-RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+ ++. .+|++++++++|++ +..+.|. .+.+++.+.|++.
T Consensus 77 ---~--~v~------~~Pt~~~~~~~~~~~~~~~~G~----~~~~~l~~~i~~~ 115 (121)
T 2djj_A 77 ---D--EIQ------GFPTIKLYPAGAKGQPVTYSGS----RTVEDLIKFIAEN 115 (121)
T ss_dssp ---S--CCS------SSSEEEEECSSCTTSCCCCCCC----SCHHHHHHHHHHT
T ss_pred ---c--ccC------cCCeEEEEeCcCCCCceEecCC----CCHHHHHHHHHhc
Confidence 1 555 58999999988884 4444333 3567777777654
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=81.48 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=67.9
Q ss_pred CeEEEEEEeCCCC--CCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 385 QYVVLFFYPLDFT--FVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 385 k~~ll~f~~~~~c--p~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++||+|| ++|| ++|+...|.|.++.++|.. .++++-|.. |.+++++.
T Consensus 34 ~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdv----------------------------De~~~la~ 83 (137)
T 2qsi_A 34 KIVVLFFR-GDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAA----------------------------EAERGLMA 83 (137)
T ss_dssp SEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECG----------------------------GGHHHHHH
T ss_pred CcEEEEEe-CCccCCCchhhHHhHHHHHHHHccC-CcEEEEEEC----------------------------CCCHHHHH
Confidence 49999999 9999 9999999999999999864 466655544 33578999
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|+|. .+||.+++ ++|+++.+..|..+. +++.+.|++
T Consensus 84 ~ygV~------siPTlilF-kdG~~v~~~vG~~~k----~~l~~~l~~ 120 (137)
T 2qsi_A 84 RFGVA------VCPSLAVV-QPERTLGVIAKIQDW----SSYLAQIGA 120 (137)
T ss_dssp HHTCC------SSSEEEEE-ECCEEEEEEESCCCH----HHHHHHHHH
T ss_pred HcCCc------cCCEEEEE-ECCEEEEEEeCCCCH----HHHHHHHHH
Confidence 99998 69999999 799999999877643 344455443
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.6e-09 Score=91.23 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=63.3
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHH--HHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAE--EFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~--~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
+...+|+++|+|| ++||++|+...|.+.+..+ ++.+ ..++.|.+|.... .
T Consensus 40 A~~~~KpVlV~F~-A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~e~~---------------~---------- 91 (151)
T 3ph9_A 40 AQKSKKPLMVIHH-LEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMHETT---------------D---------- 91 (151)
T ss_dssp HHHHTCCEEEEEC-CTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESSCCS---------------C----------
T ss_pred HHHcCCcEEEEEE-CCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecCCch---------------h----------
Confidence 3336899999999 9999999999998886522 2222 2345555542100 0
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhh
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV------GRSVDETLRLVQAF 511 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~------~~~~~~il~~l~~l 511 (547)
.+..|++. .+|+++++|++|+++....|.... ..+++++|+.++..
T Consensus 92 --~~~~~~v~------~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a 143 (151)
T 3ph9_A 92 --KNLSPDGQ------YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKA 143 (151)
T ss_dssp --GGGCTTCC------CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred --hHhhcCCC------CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence 01234544 589999999999999988776221 13567777776654
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.4e-08 Score=82.94 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+||++||+|| ++||++|....|.|.+++++|. ++.++.|..+.. . +
T Consensus 29 ~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~-----------------~--------------~ 74 (135)
T 2dbc_A 29 KDLWVVIHLY-RSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSC-----------------I--------------E 74 (135)
T ss_dssp SSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSS-----------------C--------------S
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcC-----------------c--------------c
Confidence 4589999999 9999999999999999998874 577877766531 0 2
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC---CCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG---RSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~---~~~~~il~~l~~l~ 512 (547)
.|++. .+|++++++ +|+++..+.|..+.+ ...+++.+.|++..
T Consensus 75 ~~~i~------~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 75 HYHDN------CLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp SCCSS------CCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred cCCCC------CCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 56776 589999996 999999998765432 24667767776543
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-08 Score=83.77 Aligned_cols=89 Identities=15% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++|+++|+|| ++||++|....|.+.++.+++++.+ +.++.|..+. +.++
T Consensus 23 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~ 73 (120)
T 1mek_A 23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE----------------------------ESDL 73 (120)
T ss_dssp HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT----------------------------CCSS
T ss_pred cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC----------------------------CHHH
Confidence 5789999999 9999999999999999999887543 4555544421 2356
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLR--QITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~--~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+.|++. .+|+++++ ++|+++ ..+.|. .+.+++.+.|+++
T Consensus 74 ~~~~~v~------~~Pt~~~~-~~g~~~~~~~~~g~----~~~~~l~~~l~~~ 115 (120)
T 1mek_A 74 AQQYGVR------GYPTIKFF-RNGDTASPKEYTAG----READDIVNWLKKR 115 (120)
T ss_dssp HHHHTCC------SSSEEEEE-ESSCSSSCEECCCC----SSHHHHHHHHHTT
T ss_pred HHHCCCC------cccEEEEE-eCCCcCCcccccCc----cCHHHHHHHHHhc
Confidence 7889987 58999999 688876 555442 2567787777754
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.94 E-value=9.7e-09 Score=84.35 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=60.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....+.+.++.++++. ++.++.|+.+. +.++++
T Consensus 18 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 67 (106)
T 2yj7_A 18 SDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDE----------------------------NPNTAA 67 (106)
Confidence 5789999999 99999999999999999988864 46666655432 235667
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.|++. ..|+.+++ ++|+++..+.|..+
T Consensus 68 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~~ 94 (106)
T 2yj7_A 68 QYGIR------SIPTLLLF-KNGQVVDRLVGAQP 94 (106)
Confidence 78887 48999999 79999988765543
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=73.38 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=59.2
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
+.|++|| ++|||+|....|.+.++.+++++ ++.++.|..|. +.++++.|+
T Consensus 3 ~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~~ 52 (85)
T 1nho_A 3 VNIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMV----------------------------DREKAIEYG 52 (85)
T ss_dssp CCEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTT----------------------------CGGGGGGTC
T ss_pred EEEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHhCC
Confidence 4689999 99999999999999999998864 57888776642 234567788
Q ss_pred CcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 466 VLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 466 v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+. .+|++++ +|++ .+.|.. +.+++.+.|++
T Consensus 53 v~------~~Pt~~~---~G~~--~~~G~~----~~~~l~~~l~~ 82 (85)
T 1nho_A 53 LM------AVPAIAI---NGVV--RFVGAP----SREELFEAIND 82 (85)
T ss_dssp SS------CSSEEEE---TTTE--EEECSS----CCHHHHHHHHH
T ss_pred ce------eeCEEEE---CCEE--EEccCC----CHHHHHHHHHH
Confidence 87 5899887 8998 554543 33556655554
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.6e-07 Score=87.20 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.++|+++|+|| ++||++|....|.+.+++++++..+ +.++.|.++ .+.+
T Consensus 30 ~~~~~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~----------------------------~~~~ 80 (241)
T 3idv_A 30 ADKDTVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT----------------------------SASV 80 (241)
T ss_dssp TTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETT----------------------------TCHH
T ss_pred hcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEecc----------------------------CCHH
Confidence 36899999999 9999999999999999999998765 666666553 3457
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++.|++. .+|++++++ +|+++. +.+. ++.+++.+.+++..
T Consensus 81 l~~~~~v~------~~Pt~~~~~-~g~~~~-~~g~----~~~~~l~~~i~~~~ 121 (241)
T 3idv_A 81 LASRFDVS------GYPTIKILK-KGQAVD-YEGS----RTQEEIVAKVREVS 121 (241)
T ss_dssp HHHHTTCC------SSSEEEEEE-TTEEEE-CCSC----SCHHHHHHHHHHHH
T ss_pred HHHhcCCC------cCCEEEEEc-CCCccc-ccCc----ccHHHHHHHHhhcc
Confidence 88999998 589999996 677663 4333 35677777776544
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=98.50 E-value=8.3e-07 Score=83.86 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=67.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh---CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK---INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+++++|+|| ++||++|+...|.+.++++++++ .++.++.|..+ .+.+
T Consensus 133 ~~~~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~----------------------------~~~~ 183 (226)
T 1a8l_A 133 DQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI----------------------------EYPE 183 (226)
T ss_dssp CSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG----------------------------GCHH
T ss_pred CCCcEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcc----------------------------cCHH
Confidence 3455599999 99999999999999999999974 36777777553 2356
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+++.|++. .+|+++++ ++|+.+..+.|.. +.+++.+.|++
T Consensus 184 l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~ 223 (226)
T 1a8l_A 184 WADQYNVM------AVPKIVIQ-VNGEDRVEFEGAY----PEKMFLEKLLS 223 (226)
T ss_dssp HHHHTTCC------SSCEEEEE-ETTEEEEEEESCC----CHHHHHHHHHH
T ss_pred HHHhCCCc------ccCeEEEE-eCCceeEEEcCCC----CHHHHHHHHHH
Confidence 78899998 58997776 6999998887655 34566666654
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=80.74 Aligned_cols=79 Identities=15% Similarity=0.247 Sum_probs=62.4
Q ss_pred cCCCCCeEEEEEEeCC-------CCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 380 SQYKGQYVVLFFYPLD-------FTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~-------~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.+.++|+++|+|| ++ |||+|....|.+.++++++++ ++.++.|..+... .|
T Consensus 20 ~~~~~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~---~~----------------- 77 (123)
T 1wou_A 20 EQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YW----------------- 77 (123)
T ss_dssp HTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HH-----------------
T ss_pred HHhCCCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCch---hh-----------------
Confidence 3445899999999 99 999999999999999888754 7899999887532 12
Q ss_pred ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcE
Q psy224 453 LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNL 487 (547)
Q Consensus 453 l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v 487 (547)
.|.+..+.+.|++. .+|+++++++.+++
T Consensus 78 -~d~~~~~~~~~~i~------~~Pt~~~~~~~~~~ 105 (123)
T 1wou_A 78 -KDPNNDFRKNLKVT------AVPTLLKYGTPQKL 105 (123)
T ss_dssp -HCTTCHHHHHHCCC------SSSEEEETTSSCEE
T ss_pred -hchhHHHHHHCCCC------eeCEEEEEcCCceE
Confidence 14456788899998 58999999874333
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.50 E-value=6e-07 Score=81.05 Aligned_cols=106 Identities=8% Similarity=-0.058 Sum_probs=66.4
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHH---HHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA---FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~---l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.+..+..+||+++|+|| ++||++|+...+. ..++.+.+.+ ++.++-|..|...++.+...
T Consensus 31 a~~~A~~~~KpVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~--------------- 93 (173)
T 3ira_A 31 AFEKARKENKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYM--------------- 93 (173)
T ss_dssp HHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHH---------------
T ss_pred HHHHHHHhCCCEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHH---------------
Confidence 34555557999999999 9999999997773 2344444433 56777776654322221110
Q ss_pred ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC-----CCCHHHHHHHHHh
Q psy224 453 LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV-----GRSVDETLRLVQA 510 (547)
Q Consensus 453 l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~-----~~~~~~il~~l~~ 510 (547)
..+...+|+. .+|+++++|++|++++.. +..+. ...+.++|+.+++
T Consensus 94 -----~~~q~~~gv~------g~Pt~v~l~~dG~~v~~~-ty~p~~~~~~~~~f~~~L~~v~~ 144 (173)
T 3ira_A 94 -----TVCQIILGRG------GWPLNIIMTPGKKPFFAG-TYIPKNTRFNQIGMLELVPRIKE 144 (173)
T ss_dssp -----HHHHHHHSCC------CSSEEEEECTTSCEEEEE-SSCCSSCBTTBCCHHHHHHHHHH
T ss_pred -----HHHHHHcCCC------CCcceeeECCCCCceeee-eeCCCCcCCCCCCHHHHHHHHHH
Confidence 1122235776 589999999999999875 22211 1246667766654
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.6e-07 Score=86.36 Aligned_cols=93 Identities=10% Similarity=0.107 Sum_probs=70.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.+|++||+|| ++||++|....|.+.++++++++ .++.++.|+++. |.+.++
T Consensus 29 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~--------------------------~~~~~l 81 (244)
T 3q6o_A 29 SRSAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE--------------------------ETNSAV 81 (244)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS--------------------------TTTHHH
T ss_pred CCCeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc--------------------------hhhHHH
Confidence 4689999999 99999999999999999999986 468888888643 235788
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE---EEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL---RQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v---~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++.|++. .+|+++++++.+++ +.... .+.+.+++.+.+.+.-
T Consensus 82 ~~~~~v~------~~Pt~~~~~~g~~~~~g~~~~~----~g~~~~~l~~~i~~~l 126 (244)
T 3q6o_A 82 CRDFNIP------GFPTVRFFXAFTXNGSGAVFPV----AGADVQTLRERLIDAL 126 (244)
T ss_dssp HHHTTCC------SSSEEEEECTTCCSSSCEECCC----TTCCHHHHHHHHHHHH
T ss_pred HHHcCCC------ccCEEEEEeCCCcCCCCeeEec----CCCCHHHHHHHHHHHH
Confidence 9999998 58999999863321 11121 2246777777776544
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-07 Score=73.37 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=59.4
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
.++|++|| ++|||+|....|.+.++.++++ .++.++.|..+. +.++++.|
T Consensus 3 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~~~ 52 (85)
T 1fo5_A 3 KVKIELFT-SPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVME----------------------------NPQKAMEY 52 (85)
T ss_dssp CEEEEEEE-CCCSSCCCTHHHHHHHHHHHCS-SSEEEEEEESSS----------------------------SCCTTTST
T ss_pred ceEEEEEe-CCCCCchHHHHHHHHHHHHHcC-CceEEEEEECCC----------------------------CHHHHHHC
Confidence 57899999 9999999999999999998886 368888887753 12344567
Q ss_pred CCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 465 GVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 465 ~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++. .+|++++ +|++ .+.|.. +.+++.+.|++
T Consensus 53 ~v~------~~Pt~~~---~G~~--~~~G~~----~~~~l~~~l~~ 83 (85)
T 1fo5_A 53 GIM------AVPTIVI---NGDV--EFIGAP----TKEALVEAIKK 83 (85)
T ss_dssp TTC------CSSEEEE---TTEE--ECCSSS----SSHHHHHHHHH
T ss_pred CCc------ccCEEEE---CCEE--eeecCC----CHHHHHHHHHH
Confidence 877 4899887 8888 444432 34566666553
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.6e-07 Score=95.26 Aligned_cols=93 Identities=5% Similarity=0.044 Sum_probs=75.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.+|++||+|| ++||++|....|.+.+++++|++ .++.++.|.++. |.+.++
T Consensus 29 ~~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~--------------------------d~~~~l 81 (519)
T 3t58_A 29 SSSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE--------------------------ETNSAV 81 (519)
T ss_dssp CSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS--------------------------GGGHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc--------------------------cccHHH
Confidence 4689999999 99999999999999999999986 368888888764 234688
Q ss_pred HHHhCCcccCCCcceeEEEEEcC---CCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDD---KQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~---~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++.|+|. .+|+++++++ +|+.+..+.+. ++.+++.+.|++.-
T Consensus 82 ~~~~~V~------~~PTl~~f~~g~~~G~~~~~~~g~----~~~~~L~~~l~~~l 126 (519)
T 3t58_A 82 CREFNIA------GFPTVRFFQAFTKNGSGATLPGAG----ANVQTLRMRLIDAL 126 (519)
T ss_dssp HHHTTCC------SBSEEEEECTTCCSCCCEEECCSS----CCHHHHHHHHHHHH
T ss_pred HHHcCCc------ccCEEEEEcCcccCCCceeEecCC----CCHHHHHHHHHHHH
Confidence 8999998 5899999997 77776666444 36777777776654
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-08 Score=84.79 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.++|++||+|| ++||++|....|.+.++.++|+ ++.++.|..|. +.++.
T Consensus 34 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~ 82 (130)
T 1wmj_A 34 EAGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE----------------------------LKEVA 82 (130)
T ss_dssp TTTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT----------------------------SGGGH
T ss_pred hcCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc----------------------------hHHHH
Confidence 36899999999 9999999999999999998875 57777665532 34677
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
+.|++. .+|+.+++ ++|+++..+.|
T Consensus 83 ~~~~v~------~~Pt~~~~-~~g~~~~~~~g 107 (130)
T 1wmj_A 83 EKYNVE------AMPTFLFI-KDGAEADKVVG 107 (130)
T ss_dssp HHHTCC------SSCCCCBC-TTTTCCBCCCT
T ss_pred HHcCCC------ccceEEEE-eCCeEEEEEeC
Confidence 889987 58987666 89999887755
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-07 Score=81.51 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=58.3
Q ss_pred CeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHhhCCcE--EEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 385 QYVVLFFYPLDF--TFVCPTEIIAFSDRAEEFKKINTQ--VIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 385 k~~ll~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~~~--vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+.+||+|+ ++| |++|+...|.|.+++++| . ++. ++.|..|. +.++
T Consensus 35 ~~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~----------------------------~~~l 83 (142)
T 2es7_A 35 GDGVILLS-SDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQ----------------------------SEAI 83 (142)
T ss_dssp CSEEEEEC-CCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHH----------------------------HHHH
T ss_pred CCEEEEEE-CCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCC----------------------------CHHH
Confidence 44677887 877 999999999999999988 3 466 77765431 3568
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++|+|. .+|+++++ ++|+++..+.|.. +.+++.+.|+++-
T Consensus 84 a~~~~V~------~iPT~~~f-k~G~~v~~~~G~~----~~~~l~~~i~~~l 124 (142)
T 2es7_A 84 GDRFNVR------RFPATLVF-TDGKLRGALSGIH----PWAELLTLMRSIV 124 (142)
T ss_dssp HHTTTCC------SSSEEEEE-SCC----CEESCC----CHHHHHHHHHHHH
T ss_pred HHhcCCC------cCCeEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHHh
Confidence 8899998 58999999 8999999887655 3456666666544
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.9e-06 Score=81.71 Aligned_cols=63 Identities=8% Similarity=0.129 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
...++++.+++.++..++..++ ..+ ++.|+++||+ ++++.+.+.+.+.++.++..+..+....
T Consensus 201 ~~~~~~~~~~~~i~~~i~~~l~-----~~~~~~~ivL~GG~-a~~~~l~~~l~~~l~~~v~~~~~p~~a~ 264 (272)
T 3h1q_A 201 EIMRVVRPVIEKMALIVKEVIK-----NYDQTLPVYVVGGT-AYLTGFSEEFSRFLGKEVQVPIHPLLVT 264 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----TSCSSCCEEEESGG-GGSTTHHHHHHHHHSSCCBCCSSGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hcCCCCEEEEECCc-cchhhHHHHHHHHhCCCccccCChHHHH
Confidence 4678888889988877777655 445 7899999998 9999999999999999998877765443
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-06 Score=82.45 Aligned_cols=88 Identities=19% Similarity=0.129 Sum_probs=67.1
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh---CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK---INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
++++++.|++|| ++|||+|+...|.+.+++.++++ .++.+..|..+ .+
T Consensus 135 ~~~~~~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~----------------------------~~ 185 (243)
T 2hls_A 135 SLKGRVHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAY----------------------------EN 185 (243)
T ss_dssp HCCSCEEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETT----------------------------TC
T ss_pred HcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECc----------------------------cC
Confidence 467888999999 99999999999999999999852 45776666443 23
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.++++.|++. .+|++++ +|+++ +.|.. +.+++++.|++..
T Consensus 186 ~~~~~~~~V~------~vPt~~i---~G~~~--~~G~~----~~~~l~~~l~~~~ 225 (243)
T 2hls_A 186 PDIADKYGVM------SVPSIAI---NGYLV--FVGVP----YEEDFLDYVKSAA 225 (243)
T ss_dssp HHHHHHTTCC------SSSEEEE---TTEEE--EESCC----CHHHHHHHHHHHH
T ss_pred HHHHHHcCCe------eeCeEEE---CCEEE--EeCCC----CHHHHHHHHHHHh
Confidence 5678899988 5899887 78875 54444 4677777777644
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=98.33 E-value=3.9e-07 Score=87.13 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=69.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.|.+++.+|. ++.++.|..+. . . +++
T Consensus 132 ~~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~----~-------------~------------l~~ 179 (245)
T 1a0r_P 132 KITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN----T-------------G------------AGD 179 (245)
T ss_dssp TTCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH----H-------------C------------CTT
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc----H-------------H------------HHH
Confidence 5899999999 9999999999999999999986 58888876532 0 0 123
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV---GRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++. +|+++..++|.... ....+++.+.|++..
T Consensus 180 ~~~I~------~~PTll~~~-~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g 225 (245)
T 1a0r_P 180 RFSSD------VLPTLLVYK-GGELLSNFISVTEQLAEEFFTGDVESFLNEYG 225 (245)
T ss_dssp SSCTT------TCSEEEEEE-TTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred HCCCC------CCCEEEEEE-CCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence 56776 589998885 99999999776432 235667777777654
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=85.63 Aligned_cols=90 Identities=16% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++||+|| ++||++|....|.+.++++++.. .+.++.|.+|.. .+.++++
T Consensus 34 ~~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~-~~~~~~v~~d~~--------------------------~~~~l~~ 85 (298)
T 3ed3_A 34 TNYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDLN--------------------------KNKALCA 85 (298)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTST--------------------------TTHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CcEEEEEEccCc--------------------------cCHHHHH
Confidence 4789999999 99999999999999999999875 388999888731 2578889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcE-----------------EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNL-----------------RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v-----------------~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++++ |++ ...+. -.++.+.+++.+...
T Consensus 86 ~~~I~------~~Pt~~~~~~-g~~v~~~~g~~~~~~~~~~~~~~y~----G~r~~~~i~~fl~~~ 140 (298)
T 3ed3_A 86 KYDVN------GFPTLMVFRP-PKIDLSKPIDNAKKSFSAHANEVYS----GARTLAPIVDFSLSR 140 (298)
T ss_dssp HTTCC------BSSEEEEEEC-CCC-------------CCCEEEECC----SCCSHHHHHHHHHTT
T ss_pred hCCCC------ccceEEEEEC-Cceeecccccccccccccccceeec----CCcCHHHHHHHHHHh
Confidence 99998 5899999974 553 23332 234678888887654
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.6e-07 Score=73.94 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=59.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|+ ++|||+|....|.+.++.++ .++.++-|.+|...++ ..+++..
T Consensus 24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVde~r~~------------------------Sn~IA~~ 75 (112)
T 3iv4_A 24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQQERDL------------------------SDYIAKK 75 (112)
T ss_dssp CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGGGGHHH------------------------HHHHHHH
T ss_pred CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEeecCchh------------------------hHHHHHH
Confidence 789999999 99999999999999999874 3677777765432111 2568999
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
|||.. ..|+.+++ ++|++++...
T Consensus 76 ~~V~h-----~sPq~il~-k~G~~v~~~S 98 (112)
T 3iv4_A 76 TNVKH-----ESPQAFYF-VNGEMVWNRD 98 (112)
T ss_dssp HTCCC-----CSSEEEEE-ETTEEEEEEE
T ss_pred hCCcc-----CCCeEEEE-ECCEEEEEee
Confidence 99984 37999999 7999998874
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.5e-08 Score=80.22 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=60.0
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.++++++++|+.||+|| ++|||+|....|.+.++.++|. .|.++.... .+
T Consensus 4 ~~~la~~~~k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~~~----------------------~~ 53 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQVP-------YVECSPNGP----------------------GT 53 (106)
T ss_dssp HHHHHHHHHHHTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-------EEESCTTCT----------------------TS
T ss_pred hhHHHHhcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHhCC-------EEEEecccc----------------------cc
Confidence 56777888898999999 9999999999999998886553 222221000 02
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+.++++.|+|. .+|++++ +|+. +.|.. +.+++.+.+
T Consensus 54 ~~~~l~~~~~V~------~~PT~~i---~G~~---~~G~~----~~~~l~~~~ 90 (106)
T 3kp8_A 54 PQAQECTEAGIT------SYPTWII---NGRT---YTGVR----SLEALAVAS 90 (106)
T ss_dssp CCCHHHHHTTCC------SSSEEEE---TTEE---EESCC----CHHHHHHHH
T ss_pred hhHHHHHHcCCe------EeCEEEE---CCEE---ecCCC----CHHHHHHHh
Confidence 457899999998 5899665 7764 44443 455555543
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-06 Score=72.80 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++++||+|| ++||++|+...|.|.++.++|. ++.++-|..|.. ++.
T Consensus 23 ~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~-------------------------------~~~ 68 (118)
T 3evi_A 23 DVWVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSC-------------------------------IQH 68 (118)
T ss_dssp TCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGT-------------------------------STT
T ss_pred CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHh-------------------------------HHH
Confidence 459999999 9999999999999999999885 578877765420 135
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHhh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV---GRSVDETLRLVQAF 511 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~~il~~l~~l 511 (547)
|++. .+|+.+++ ++|+++....|..+. ....+++-..|++.
T Consensus 69 ~~v~------~~PT~~~f-k~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~ 112 (118)
T 3evi_A 69 YHDN------CLPTIFVY-KNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112 (118)
T ss_dssp CCGG------GCSEEEEE-ETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred CCCC------CCCEEEEE-ECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence 6776 58999999 699999999877653 23456666666543
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-06 Score=64.36 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=48.3
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
..|.|| ++||++|+...|.+.++.++++. ++.++.|. +.+++++|++
T Consensus 2 ~~v~f~-a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~-------------------------------~~~~~~~~~v 48 (77)
T 1ilo_A 2 MKIQIY-GTGCANCQMLEKNAREAVKELGI-DAEFEKIK-------------------------------EMDQILEAGL 48 (77)
T ss_dssp EEEEEE-CSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC-------------------------------SHHHHHHHTC
T ss_pred cEEEEE-cCCChhHHHHHHHHHHHHHHcCC-ceEEEEec-------------------------------CHHHHHHCCC
Confidence 358899 99999999999999999888753 35555442 3567789998
Q ss_pred cccCCCcceeEEEEEcCCCcEEEE
Q psy224 467 LNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 467 ~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
. .+|++++ +|+++..
T Consensus 49 ~------~~Pt~~~---~G~~~~~ 63 (77)
T 1ilo_A 49 T------ALPGLAV---DGELKIM 63 (77)
T ss_dssp S------SSSCEEE---TTEEEEC
T ss_pred C------cCCEEEE---CCEEEEc
Confidence 8 5899887 8988765
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=6.5e-06 Score=78.28 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=68.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.+++++|+|| ++||++|....|.+.+++++++.++ +.++.|..+ .+.++
T Consensus 146 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l 196 (241)
T 3idv_A 146 DADIILVEFY-APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT----------------------------AETDL 196 (241)
T ss_dssp HCSEEEEEEE-CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETT----------------------------TCHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECC----------------------------CCHHH
Confidence 4689999999 9999999999999999999997643 666655443 24568
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++|++. .+|+.++++ +|+.+. +.|. ++.+++++.|++..
T Consensus 197 ~~~~~v~------~~Pt~~~~~-~g~~~~-~~g~----~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 197 AKRFDVS------GYPTLKIFR-KGRPYD-YNGP----REKYGIVDYMIEQS 236 (241)
T ss_dssp HHHTTCC------SSSEEEEEE-TTEEEE-CCSC----CSHHHHHHHHHHHT
T ss_pred HHHcCCc------ccCEEEEEE-CCeEEE-ecCC----CCHHHHHHHHHhhh
Confidence 8999998 589999986 687765 4332 35778888877543
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-06 Score=80.48 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=67.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+|+++||+|| ++||++|....|.|.+++++|. ++.++.|..+ . ..+++
T Consensus 119 ~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~----~-------------------------~~l~~ 166 (217)
T 2trc_P 119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS----N-------------------------TGAGD 166 (217)
T ss_dssp TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH----H-------------------------HTCST
T ss_pred CCcEEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC----c-------------------------HHHHH
Confidence 5799999999 9999999999999999998884 6888887654 0 01223
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV---GRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+.+++. +|+++..+.|..+. ....+++.+.|++..
T Consensus 167 ~~~i~------~~PTl~~~~-~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g 212 (217)
T 2trc_P 167 RFSSD------VLPTLLVYK-GGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp TSCGG------GCSEEEEEE-TTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred HCCCC------CCCEEEEEE-CCEEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence 56776 589999994 99999998765442 223566767766543
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=98.12 E-value=7.5e-06 Score=82.93 Aligned_cols=87 Identities=8% Similarity=0.098 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHH-------HHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIA-------FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~-------l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
++++++|+|| |+||+ |...+|. +.+++++++..++.++.|.++.
T Consensus 27 ~~~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~--------------------------- 77 (350)
T 1sji_A 27 KYDVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK--------------------------- 77 (350)
T ss_dssp TCSEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT---------------------------
T ss_pred hCCeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC---------------------------
Confidence 4689999999 99999 9888888 7778877776678888776643
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+++++|+|. .+|+.+++ ++|++ ..+.|. ++.+++.+.++..
T Consensus 78 -~~~l~~~~~v~------~~Pt~~~~-~~g~~-~~~~G~----~~~~~l~~~i~~~ 120 (350)
T 1sji_A 78 -EAKLAKKLGFD------EEGSLYVL-KGDRT-IEFDGE----FAADVLVEFLLDL 120 (350)
T ss_dssp -THHHHHHHTCC------STTEEEEE-ETTEE-EEECSC----CCHHHHHHHHHTT
T ss_pred -CHHHHHhcCCC------ccceEEEE-ECCcE-EEecCC----CCHHHHHHHHHHh
Confidence 35788999998 58999999 68884 455443 3567777776653
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=78.06 Aligned_cols=65 Identities=11% Similarity=0.226 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
.++++.+++.++++-.+.... .+....++|+++||. ++|+.+++.+++.+++++.++..+..+.|
T Consensus 181 ~~~di~a~~~~~v~~~l~~~~----~~~~~~~~vvl~GGv-a~n~~lr~~l~~~~g~~~~~p~~p~~~~A 245 (276)
T 4ehu_A 181 KIEDIVAGIHTSVAKRVSSLV----KRIGVQRNVVMVGGV-ARNSGIVRAMAREINTEIIVPDIPQLTGA 245 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HHHCCCSSEEEESGG-GGCHHHHHHHHHHHTSCEECCSSGGGHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HhcccCCeEEEecCc-cchHHHHHHHHHHHCCCeeeCCCcchHHH
Confidence 789999999999877665432 223447899999996 99999999999999999999887766544
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.5e-06 Score=83.59 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-----CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-----INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-----~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
++++++|.|| ++||++|....|.+.++++++++ .++.++.|.++ .+
T Consensus 21 ~~~~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~----------------------------~~ 71 (382)
T 2r2j_A 21 NADVALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD----------------------------QH 71 (382)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETT----------------------------TC
T ss_pred cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECC----------------------------cc
Confidence 4789999999 99999999999999999999963 23667776643 34
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEE-EecCCCCCCCHHHHHHHHHhhH
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQI-TINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~-~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.++++.|+|. .+|+.+++ ++|+++.. +.|. ++.+++++.++..-
T Consensus 72 ~~l~~~~~v~------~~Pt~~~f-~~G~~~~~~~~G~----~~~~~l~~~i~~~~ 116 (382)
T 2r2j_A 72 SDIAQRYRIS------KYPTLKLF-RNGMMMKREYRGQ----RSVKALADYIRQQK 116 (382)
T ss_dssp HHHHHHTTCC------EESEEEEE-ETTEEEEEECCSC----CSHHHHHHHHHHHH
T ss_pred HHHHHhcCCC------cCCEEEEE-eCCcEeeeeecCc----chHHHHHHHHHHhc
Confidence 6788999998 58998887 58998864 5343 35677777776543
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.08 E-value=4e-05 Score=67.57 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=63.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+|+++|+|+ +.||+.|+..-... .++.+.+. .++.++-+..+.++ +..
T Consensus 41 ~~K~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l~-~~fv~v~~d~~~~~--------------------------~~~ 92 (153)
T 2dlx_A 41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYHDSEE--------------------------GQR 92 (153)
T ss_dssp HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEESSSHH--------------------------HHH
T ss_pred cCCeEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHHH-cCeEEEEEecCCHh--------------------------HHH
Confidence 4899999999 99999998875432 22222222 25666666664321 245
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.+.|++. ..|+.+++|++ |+.+..+ +. .+.++.++.|+++.
T Consensus 93 l~~~y~v~------~~P~~~fld~~~G~~l~~~-~g----~~~~~fl~~L~~~l 135 (153)
T 2dlx_A 93 YIQFYKLG------DFPYVSILDPRTGQKLVEW-HQ----LDVSSFLDQVTGFL 135 (153)
T ss_dssp HHHHHTCC------SSSEEEEECTTTCCCCEEE-SS----CCHHHHHHHHHHHH
T ss_pred HHHHcCCC------CCCEEEEEeCCCCcEeeec-CC----CCHHHHHHHHHHHH
Confidence 66788887 58999999998 8777765 32 36788888887765
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-05 Score=71.57 Aligned_cols=106 Identities=6% Similarity=0.003 Sum_probs=70.2
Q ss_pred CCCeEEEEEEeC-------CCCCCcHHHHHHHHHHHHHHhhC----CcEEEEEeCCChhhHHHHhhccccCCCCCCccee
Q psy224 383 KGQYVVLFFYPL-------DFTFVCPTEIIAFSDRAEEFKKI----NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP 451 (547)
Q Consensus 383 ~gk~~ll~f~~~-------~~cp~C~~~~~~l~~~~~~~~~~----~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp 451 (547)
++.++||.|| | .||++|+...|.+.++.++|... .+.+.-|
T Consensus 36 ~~~~vvV~F~-A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kv--------------------------- 87 (178)
T 3ga4_A 36 PGYFNILYIT-MRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTV--------------------------- 87 (178)
T ss_dssp TTCEEEEEEE-CCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE---------------------------
T ss_pred CCCcEEEEEe-CCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEE---------------------------
Confidence 4568999999 8 49999999999999999999631 2223222
Q ss_pred eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEE-----------EEEecCCC--CCCCHHHHHHHHHhhHhhhhcC
Q psy224 452 ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR-----------QITINDLP--VGRSVDETLRLVQAFQFVAEHG 518 (547)
Q Consensus 452 ~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~-----------~~~~~~~~--~~~~~~~il~~l~~l~~~~~~~ 518 (547)
=.|.+++++++|+|. .+|+.+++.+.+... ..+ ... .++..+.+.+.|.+-- .-...
T Consensus 88 -D~d~~~~la~~~~I~------siPtl~~F~~g~~~~~~~~~~~~~~~~~y--~~~~~~~~~ae~la~fi~~~t-~~~i~ 157 (178)
T 3ga4_A 88 -DVNEVPQLVKDLKLQ------NVPHLVVYPPAESNKQSQFEWKTSPFYQY--SLVPENAENTLQFGDFLAKIL-NISIT 157 (178)
T ss_dssp -ETTTCHHHHHHTTCC------SSCEEEEECCCCGGGGGGCCTTTSCCEEE--CCCGGGTTCHHHHHHHHHHHH-TCCCC
T ss_pred -ECccCHHHHHHcCCC------CCCEEEEEcCCCCCCccccccccCCccee--ecccCCCcCHHHHHHHHHHhc-CCCcc
Confidence 234568999999998 689999996655433 222 222 2567777777775422 22224
Q ss_pred ccccCCcc
Q psy224 519 EVCPAGWK 526 (547)
Q Consensus 519 ~~~~~~w~ 526 (547)
+.-|.+|.
T Consensus 158 I~rp~ny~ 165 (178)
T 3ga4_A 158 VPQAFNVQ 165 (178)
T ss_dssp CCCSCC--
T ss_pred ccCCCChH
Confidence 55566663
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-06 Score=71.74 Aligned_cols=92 Identities=8% Similarity=-0.080 Sum_probs=58.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
+.+.+||+|| +.||++|...-+.+...++.-. .+.+.++-|..+.. ....++
T Consensus 17 ~~~~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~--------------------------~~~~la 69 (116)
T 3dml_A 17 KAELRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDP--------------------------LPPGLE 69 (116)
T ss_dssp --CEEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSC--------------------------CCTTCB
T ss_pred cCCCEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCC--------------------------CchhHH
Confidence 4568999999 9999999988765543332211 01244444444331 112344
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
..|++. .+||.++++ +|+.+.+..|..+ .+++++.|+.+.
T Consensus 70 ~~~~V~------g~PT~i~f~-~G~ev~Ri~G~~~----~~~f~~~L~~~l 109 (116)
T 3dml_A 70 LARPVT------FTPTFVLMA-GDVESGRLEGYPG----EDFFWPMLARLI 109 (116)
T ss_dssp CSSCCC------SSSEEEEEE-TTEEEEEEECCCC----HHHHHHHHHHHH
T ss_pred HHCCCC------CCCEEEEEE-CCEEEeeecCCCC----HHHHHHHHHHHH
Confidence 566666 589999998 9999999987764 356666666554
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=85.99 Aligned_cols=90 Identities=10% Similarity=0.148 Sum_probs=71.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++++++|.|| ++||++|....|.+.++.++++..++.++.|.++. +..+++
T Consensus 30 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 80 (504)
T 2b5e_A 30 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE----------------------------NQDLCM 80 (504)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT----------------------------CHHHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999999987678888887543 357889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNL--RQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v--~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+.+++. +|+. ...+.|. ++.+.+.+.+++.-
T Consensus 81 ~~~v~------~~Pt~~~~~-~g~~~~~~~~~G~----~~~~~l~~~l~~~~ 121 (504)
T 2b5e_A 81 EHNIP------GFPSLKIFK-NSDVNNSIDYEGP----RTAEAIVQFMIKQS 121 (504)
T ss_dssp HTTCC------SSSEEEEEE-TTCTTCEEECCSC----CSHHHHHHHHHHHT
T ss_pred hcCCC------cCCEEEEEe-CCccccceeecCC----CCHHHHHHHHHHhc
Confidence 99998 589999995 6775 5555443 35677777776543
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.8e-06 Score=88.95 Aligned_cols=90 Identities=13% Similarity=0.247 Sum_probs=68.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.+|+++|+|| ++||++|....|.+.+++++|++. ++.++.|..+.. ++.
T Consensus 369 ~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-----------------------------~~~ 418 (481)
T 3f8u_A 369 ENKDVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-----------------------------DVP 418 (481)
T ss_dssp TTCEEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-----------------------------CCC
T ss_pred CCCcEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-----------------------------hhH
Confidence 4899999999 999999999999999999999864 677776665431 122
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNL-RQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.|++. .+|+.++++++|++ ...+.|. ++.+++++.|++..
T Consensus 419 ~~~~v~------~~Pt~~~~~~~~~~~~~~~~G~----~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 419 SPYEVR------GFPTIYFSPANKKLNPKKYEGG----RELSDFISYLQREA 460 (481)
T ss_dssp TTCCCC------SSSEEEEECTTCTTSCEECCSC----CSHHHHHHHHHHHC
T ss_pred hhCCCc------ccCEEEEEeCCCeEeeeEeCCC----CCHHHHHHHHHHhc
Confidence 456776 58999999988874 4444333 36788888887644
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-05 Score=73.97 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++|++|| ++||++|+...|.+.++..++. ++.++.|..+ .+.++++
T Consensus 135 ~~~~~~v~F~-a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~----------------------------~~~~l~~ 183 (229)
T 2ywm_A 135 DIPIEIWVFV-TTSCGYCPSAAVMAWDFALAND--YITSKVIDAS----------------------------ENQDLAE 183 (229)
T ss_dssp CSCEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGG----------------------------GCHHHHH
T ss_pred CCCeEEEEEE-CCCCcchHHHHHHHHHHHHHCC--CeEEEEEECC----------------------------CCHHHHH
Confidence 4556688999 9999999999999999998873 6777777543 2356888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|++++ +|++ ..+.|.. +.+++.+.|++.
T Consensus 184 ~~~v~------~~Pt~~~---~G~~-~~~~G~~----~~~~l~~~l~~~ 218 (229)
T 2ywm_A 184 QFQVV------GVPKIVI---NKGV-AEFVGAQ----PENAFLGYIMAV 218 (229)
T ss_dssp HTTCC------SSSEEEE---GGGT-EEEESCC----CHHHHHHHHHHH
T ss_pred HcCCc------ccCEEEE---CCEE-EEeeCCC----CHHHHHHHHHHH
Confidence 99998 5899887 7884 4465544 345666665544
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=84.75 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=70.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++++++|+|| ++||++|....|.+.+++++++.. +.++.|.++. +.++++
T Consensus 20 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~----------------------------~~~l~~ 69 (481)
T 3f8u_A 20 SAGLMLVEFF-APWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA----------------------------NTNTCN 69 (481)
T ss_dssp SSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC----------------------------CHHHHH
Confidence 3489999999 999999999999999999998764 6777766543 457889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+.+++ ++|+++..+.|. ++.+++++.++...
T Consensus 70 ~~~v~------~~Ptl~~~-~~g~~~~~~~G~----~~~~~l~~~~~~~~ 108 (481)
T 3f8u_A 70 KYGVS------GYPTLKIF-RDGEEAGAYDGP----RTADGIVSHLKKQA 108 (481)
T ss_dssp HTTCC------EESEEEEE-ETTEEEEECCSC----SSHHHHHHHHHHHT
T ss_pred hcCCC------CCCEEEEE-eCCceeeeecCc----cCHHHHHHHHHhhc
Confidence 99998 58988888 689887777544 35677777776543
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.7e-06 Score=86.63 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-C------cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-N------TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~------~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
++|++||+|| ++||++|+...|.+.+++++|++. + +.++.|.+|.
T Consensus 41 ~~k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~--------------------------- 92 (470)
T 3qcp_A 41 PLCPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS--------------------------- 92 (470)
T ss_dssp GGSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT---------------------------
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC---------------------------
Confidence 3489999999 999999999999999999998743 2 6777776542
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCc
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQN 486 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~ 486 (547)
+.+++++|+|. .+|++++++++|.
T Consensus 93 -~~~la~~y~V~------~~PTlilf~~gg~ 116 (470)
T 3qcp_A 93 -EVDLCRKYDIN------FVPRLFFFYPRDS 116 (470)
T ss_dssp -CHHHHHHTTCC------SSCEEEEEEESSC
T ss_pred -CHHHHHHcCCC------ccCeEEEEECCCc
Confidence 35788999998 5899999976553
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=3e-05 Score=87.12 Aligned_cols=92 Identities=7% Similarity=0.138 Sum_probs=71.2
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
++++++++++|+|| ++||++|...+|.+.+++++|+. ++.++.|.++. +.
T Consensus 450 ~~~~~~~~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~ 499 (780)
T 3apo_A 450 FPASDKEPWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTI----------------------------HE 499 (780)
T ss_dssp SCTTCCSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CH
T ss_pred HHHcCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------CH
Confidence 44557899999999 99999999999999999999974 58888887653 23
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+++.|++. .+|++++++ +|++ +.+.|.. +.+++.+.++.+.
T Consensus 500 ~~~~~~~v~------~~Pt~~~~~-~g~~-~~~~g~~----~~~~l~~fi~~~~ 541 (780)
T 3apo_A 500 GLCNMYNIQ------AYPTTVVFN-QSSI-HEYEGHH----SAEQILEFIEDLR 541 (780)
T ss_dssp HHHHHTTCC------SSSEEEEEE-TTEE-EEECSCS----CHHHHHHHHHHHH
T ss_pred HHHHHcCCC------cCCeEEEEc-CCce-eeecCcc----cHHHHHHHHHhhc
Confidence 477889988 489999995 6876 5554433 4567777776654
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-05 Score=73.91 Aligned_cols=111 Identities=11% Similarity=0.017 Sum_probs=66.7
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC----Chhh-------------HHHHhhcc
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD----SHFS-------------HLAWCNIP 439 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d----~~~~-------------~~~~~~~~ 439 (547)
+.+....+|++|+.|| ..|||+|....+.|.++.+ .+++++.+... .+.. ...|.+..
T Consensus 79 ~~~g~~~~k~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~ 153 (216)
T 1eej_A 79 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVM 153 (216)
T ss_dssp EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred eeecCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHH
Confidence 4455557899999999 9999999999999988764 37888776542 1111 11121111
Q ss_pred ccCCCCCCcce---eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 440 RNKGGLGDMAI---PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 440 ~~~~~~~~~~f---p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
. ..++++ +...+.+.+++++||+. .+|++++. +|+. ..|.. +.+++.+.|++.
T Consensus 154 ~----~~~~~~~~~~~~v~~~~~l~~~~gV~------gtPt~v~~--dG~~---~~G~~----~~~~l~~~l~~~ 209 (216)
T 1eej_A 154 A----GKSVAPASCDVDIADHYALGVQLGVS------GTPAVVLS--NGTL---VPGYQ----PPKEMKEFLDEH 209 (216)
T ss_dssp T----TCCCCCCCCSCCHHHHHHHHHHHTCC------SSSEEECT--TSCE---EESCC----CHHHHHHHHHHH
T ss_pred h----CCCCChhHHHHHHHHHHHHHHHcCCC------ccCEEEEc--CCeE---ecCCC----CHHHHHHHHHHh
Confidence 1 113332 22334567889999998 58988553 4643 23433 344555555543
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-05 Score=80.98 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=64.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++|+++|+|| ++||++|+...|.+.++.++|++. ++.++.|..+... .
T Consensus 266 ~~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~------------------------------~ 314 (361)
T 3uem_A 266 EKKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE------------------------------V 314 (361)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB------------------------------C
T ss_pred CCCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc------------------------------h
Confidence 5799999999 999999999999999999999864 4666665443310 2
Q ss_pred HHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.|++. .+|+.++++++ |+....+.|. ++.+++++.|++
T Consensus 315 ~~~~v~------~~Pt~~~~~~~~~~~~~~~~G~----~~~~~l~~~l~~ 354 (361)
T 3uem_A 315 EAVKVH------SFPTLKFFPASADRTVIDYNGE----RTLDGFKKFLES 354 (361)
T ss_dssp SSCCCC------SSSEEEEECSSSSCCCEECCSC----SSHHHHHHHHTT
T ss_pred hhcCCc------ccCeEEEEECCCCcceeEecCC----CCHHHHHHHHHh
Confidence 345776 58999999655 5666666443 467788877664
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.4e-05 Score=89.92 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=71.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|+...|.+.+++++++. ++.++.|..+. +..+++
T Consensus 674 ~~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 723 (780)
T 3apo_A 674 GKTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQA----------------------------YPQTCQ 723 (780)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999999965 58888876542 346788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++ ++|+++..+.|..-...+.+++.+.|+++-
T Consensus 724 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l 766 (780)
T 3apo_A 724 KAGIK------AYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKL 766 (780)
T ss_dssp HTTCC------SSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHT
T ss_pred hcCCC------cCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHH
Confidence 89987 58999999 788887666553101235677777776543
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.9e-05 Score=70.06 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=37.9
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS 425 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is 425 (547)
...+-+..+|++|+.|| ..|||+|....+.|.++.+++.+ ++++...
T Consensus 14 ~~~~G~~~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~ 60 (175)
T 3gyk_A 14 APVLGNPEGDVTVVEFF-DYNCPYCRRAMAEVQGLVDADPN--VRLVYRE 60 (175)
T ss_dssp SCEEECTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred CCCcCCCCCCEEEEEEE-CCCCccHHHHHHHHHHHHHhCCC--EEEEEEe
Confidence 44566667899999999 99999999999999999988754 5555444
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=73.57 Aligned_cols=88 Identities=8% Similarity=0.086 Sum_probs=64.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHH------HHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEI------IAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~------~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
++++++|.|| |+||++|...- |.+.++.++++..++.++.|.++.
T Consensus 29 ~~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~---------------------------- 79 (367)
T 3us3_A 29 KYEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK---------------------------- 79 (367)
T ss_dssp HCSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT----------------------------
T ss_pred hCCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc----------------------------
Confidence 4689999999 99999874432 577888888876667777776643
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+++++|+|. .+||.+++. +|+.+ .+.| .+..+.+++.++..
T Consensus 80 ~~~l~~~~~V~------~~PTl~~f~-~G~~~-~y~G----~~~~~~i~~~i~~~ 122 (367)
T 3us3_A 80 DAAVAKKLGLT------EEDSIYVFK-EDEVI-EYDG----EFSADTLVEFLLDV 122 (367)
T ss_dssp THHHHHHHTCC------STTEEEEEE-TTEEE-ECCS----CCSHHHHHHHHHHH
T ss_pred cHHHHHHcCCC------cCceEEEEE-CCcEE-EeCC----CCCHHHHHHHHHHh
Confidence 35788999998 589999995 78874 4433 33577887777654
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=8e-05 Score=68.45 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
.+|++|+.|| ..|||+|....+.+.++.+++.+ ++.+.-+..+
T Consensus 24 ~~~~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred CCCeEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence 5799999999 99999999999999999988865 6888888775
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00022 Score=68.06 Aligned_cols=120 Identities=8% Similarity=0.022 Sum_probs=70.9
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC---Ch--h---------hHHHHhhccccC
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD---SH--F---------SHLAWCNIPRNK 442 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d---~~--~---------~~~~~~~~~~~~ 442 (547)
+.+-.-.+|++|+.|+ ..|||+|....+.+.++.++ .++++..+... +. . +..++.+.+...
T Consensus 90 i~~G~~~ak~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~ 165 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEAS 165 (241)
T ss_dssp EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHT
T ss_pred ceECCCCCCeEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4454446789999999 99999999999998876654 25777665541 11 0 111222222111
Q ss_pred CCCCCcce--------eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 443 GGLGDMAI--------PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 443 ~~~~~~~f--------p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+...++.- .-..+.+.++++.+|+. .+|++++.|.+|++ ....|.. +.+++.+.|++.
T Consensus 166 ~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~------gtPt~vi~~~~G~~-~~~~G~~----~~~~L~~~l~~~ 231 (241)
T 1v58_A 166 GGKLKLNVPANVSTEQMKVLSDNEKLMDDLGAN------VTPAIYYMSKENTL-QQAVGLP----DQKTLNIIMGNK 231 (241)
T ss_dssp TTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCC------SSCEEEEEETTTEE-EEEESSC----CHHHHHHHTTC-
T ss_pred hccCCCCccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCE-EEecCCC----CHHHHHHHHHHH
Confidence 11111110 01223346778899988 58999999888976 3444444 345666665543
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=97.48 E-value=7.6e-05 Score=79.39 Aligned_cols=87 Identities=10% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.+|++||+|| ++||++|....|.+.++.++++. .++.++.|..+.. . .
T Consensus 375 ~~k~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~-----------------~------------~ 424 (504)
T 2b5e_A 375 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN-----------------D------------V 424 (504)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC-----------------C------------C
T ss_pred CCCCEEEEEE-CCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCcc-----------------c------------c
Confidence 4799999999 99999999999999999999973 3566666654210 0 0
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL--RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v--~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+ |++. .+|+.+++ ++|+. +..+.|. ++.+++++.|++.
T Consensus 425 ~~-~~v~------~~Pt~~~~-~~G~~~~~~~~~G~----~~~~~l~~~i~~~ 465 (504)
T 2b5e_A 425 RG-VVIE------GYPTIVLY-PGGKKSESVVYQGS----RSLDSLFDFIKEN 465 (504)
T ss_dssp SS-CCCS------SSSEEEEE-CCTTSCCCCBCCSC----CCHHHHHHHHHHH
T ss_pred cc-CCce------ecCeEEEE-eCCceecceEecCC----CCHHHHHHHHHhc
Confidence 11 5666 58999988 78876 4444332 3577787777754
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=67.26 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=36.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
.++++|+.|| ..|||+|....+.|.++.+++.+ ++.+.-++.
T Consensus 24 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (192)
T 3h93_A 24 PGKIEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA 65 (192)
T ss_dssp TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred CCCCEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence 5799999999 99999999999999999888865 677776665
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00099 Score=62.37 Aligned_cols=90 Identities=10% Similarity=-0.012 Sum_probs=60.3
Q ss_pred CCCCCeEEEEEEeCC-CCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 381 QYKGQYVVLFFYPLD-FTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~-~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
+.+++++|++|| +. ||++|....|.+.++.+. ..++.++.|.++.++ +.+
T Consensus 19 ~~~~~v~lv~f~-~~~~C~~C~~~~~~~~~la~~--~~~v~~~~vd~~~~~--------------------------~~~ 69 (226)
T 1a8l_A 19 KMVNPVKLIVFV-RKDHCQYCDQLKQLVQELSEL--TDKLSYEIVDFDTPE--------------------------GKE 69 (226)
T ss_dssp GCCSCEEEEEEE-CSSSCTTHHHHHHHHHHHHTT--CTTEEEEEEETTSHH--------------------------HHH
T ss_pred hcCCCeEEEEEe-cCCCCchhHHHHHHHHHHHhh--CCceEEEEEeCCCcc--------------------------cHH
Confidence 345677889999 99 999999999999988754 235777766655321 356
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCCCCCCCHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDLPVGRSVDETLRL 507 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~~~~~~~~~il~~ 507 (547)
+++.|++. .+|+.+++ ++|+.. ..+.+..+ ...+.+.+..
T Consensus 70 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~~G~~~-~~~l~~~l~~ 110 (226)
T 1a8l_A 70 LAKRYRID------RAPATTIT-QDGKDFGVRYFGLPA-GHEFAAFLED 110 (226)
T ss_dssp HHHHTTCC------SSSEEEEE-ETTBCCSEEEESCCC-TTHHHHHHHH
T ss_pred HHHHcCCC------cCceEEEE-cCCceeeEEEeccCc-HHHHHHHHHH
Confidence 78899988 58999888 466543 45544432 3234444433
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0004 Score=53.63 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=45.4
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
.++.|| ++|||+|....+.+.++.+++ ++.+..+..|.. ..+.++++.||+
T Consensus 3 ~~~~f~-~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~v~~~-------------------------~~~~~~~~~~gv 53 (80)
T 2k8s_A 3 SKAIFY-HAGCPVCVSAEQAVANAIDPS---KYTVEIVHLGTD-------------------------KARIAEAEKAGV 53 (80)
T ss_dssp EEEEEE-ECSCHHHHHHHHHHHHHSCTT---TEEEEEEETTTC-------------------------SSTHHHHHHHTC
T ss_pred ceEEEe-CCCCCchHHHHHHHHHHHHhc---CCeEEEEEecCC-------------------------hhhHHHHHHcCC
Confidence 367788 999999999999888765443 455544444320 023567788998
Q ss_pred cccCCCcceeEEEEEcCCCcEEEE
Q psy224 467 LNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 467 ~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
. ..|+.++ +|++++.
T Consensus 54 ~------~vPt~~i---~g~~~~~ 68 (80)
T 2k8s_A 54 K------SVPALVI---DGAAFHI 68 (80)
T ss_dssp C------EEEEEEE---TTEEEEE
T ss_pred C------cCCEEEE---CCEEEEe
Confidence 7 5898766 7887653
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=97.20 E-value=8.2e-05 Score=61.94 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=44.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++++ || ++|||+|....+.|.++..+ +.++-|..+.. ..+ ...++.+
T Consensus 18 ~~~~vv~-f~-a~~C~~C~~~~~~l~~~~~~-----~~~v~v~~~~~--~~~---------------------~~~~l~~ 67 (116)
T 2e7p_A 18 SSAPVVV-FS-KTYCGYCNRVKQLLTQVGAS-----YKVVELDELSD--GSQ---------------------LQSALAH 67 (116)
T ss_dssp TSSSEEE-EE-CTTCHHHHHHHHHHHHHTCC-----CEEEEGGGSTT--HHH---------------------HHHHHHH
T ss_pred cCCCEEE-EE-CCCChhHHHHHHHHHHcCCC-----eEEEEccCCCC--hHH---------------------HHHHHHH
Confidence 4566555 99 99999999999988776432 33333322221 000 0146778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
.|++. .+|++ ++ +|+++..+
T Consensus 68 ~~~v~------~~Pt~-~~--~g~~v~~~ 87 (116)
T 2e7p_A 68 WTGRG------TVPNV-FI--GGKQIGGC 87 (116)
T ss_dssp HHSCC------SSCEE-EE--TTEEEECH
T ss_pred HhCCC------CcCEE-EE--CCEEECCh
Confidence 89987 48988 44 68887655
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00067 Score=62.06 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
.++++|+.|| ..+||+|....+.|.++.+++.. .+.+..++.
T Consensus 21 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 62 (195)
T 2znm_A 21 SGKIEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV 62 (195)
T ss_dssp SSSEEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred CCCcEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence 5789999999 99999999999999999988864 577777765
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00054 Score=58.65 Aligned_cols=92 Identities=10% Similarity=-0.035 Sum_probs=61.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++++.|| ++ |++|....|.|.++.++|+. .+.++-|..|. .+.++.
T Consensus 22 ~~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~g-k~~f~~vd~d~----------------------------~~~~a~ 70 (133)
T 2djk_A 22 AGIPLAYIFA-ET-AEERKELSDKLKPIAEAQRG-VINFGTIDAKA----------------------------FGAHAG 70 (133)
T ss_dssp TTSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTT-TSEEEEECTTT----------------------------TGGGTT
T ss_pred CCCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCC-eEEEEEEchHH----------------------------hHHHHH
Confidence 4578999999 99 78999999999999998864 26776665542 233456
Q ss_pred HhCCcccCCCcceeEEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDD-KQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~-~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.||+..+ .+|+.++++. +|+. +... ..-....+++.+.++.+-
T Consensus 71 ~~gi~~~----~iPtl~i~~~~~g~~-~~~~--~~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 71 NLNLKTD----KFPAFAIQEVAKNQK-FPFD--QEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp TTTCCSS----SSSEEEEECTTTCCB-CCCC--SSSCCCHHHHHHHHHHHH
T ss_pred HcCCCcc----cCCEEEEEecCcCcc-cCCC--CccccCHHHHHHHHHHHH
Confidence 6887621 1799999974 5766 4432 001223566667776554
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0006 Score=63.51 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=61.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC----ChhhH-------------HHHhhccccCCCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD----SHFSH-------------LAWCNIPRNKGGL 445 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d----~~~~~-------------~~~~~~~~~~~~~ 445 (547)
.+|++|+.|| ..|||+|....+.|.++.+ .++++..+... .+... ..|.+.+. .
T Consensus 85 ~~k~~vv~F~-d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~----~ 155 (211)
T 1t3b_A 85 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEK----G 155 (211)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHT----T
T ss_pred CCCEEEEEEE-CCCCHhHHHHHHHHHHHHh----CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHc----C
Confidence 5789999999 9999999999999888543 36777655332 11110 11111110 0
Q ss_pred CCcce---eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 446 GDMAI---PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 446 ~~~~f---p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
..+++ ....+.+.++++.||+. .+|++++ .+|+. ..|.. +.+++.+.|++.
T Consensus 156 ~~~~~~~~~~~v~~~~~l~~~~gV~------gTPt~vi--~nG~~---~~G~~----~~~~l~~~l~~~ 209 (211)
T 1t3b_A 156 NLPKEVKTPNIVKKHYELGIQFGVR------GTPSIVT--STGEL---IGGYL----KPADLLRALEET 209 (211)
T ss_dssp CCCSSCCCSSHHHHHHHHHHHHTCC------SSCEEEC--TTSCC---CCSCC----CHHHHHHHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCC------cCCEEEE--eCCEE---ecCCC----CHHHHHHHHHhc
Confidence 01211 11223457888999998 5899876 46762 22222 456676766654
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00078 Score=53.12 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=49.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCc
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVL 467 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~ 467 (547)
|+.|| ++||++|....+.|.++..++ +.-| -.|.+.+++.+|++.
T Consensus 3 vv~f~-a~~C~~C~~~~~~L~~~~~~~------~~~v----------------------------did~~~~l~~~~g~~ 47 (87)
T 1ttz_A 3 LTLYQ-RDDCHLCDQAVEALAQARAGA------FFSV----------------------------FIDDDAALESAYGLR 47 (87)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHTTCCC------EEEE----------------------------ECTTCHHHHHHHTTT
T ss_pred EEEEE-CCCCchHHHHHHHHHHHHHhh------eEEE----------------------------ECCCCHHHHHHhCCC
Confidence 78899 999999999888887654321 1111 123456788889875
Q ss_pred ccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 468 NEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 468 ~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|+.++ .+|+.+. +.. +.+++.+.|++.
T Consensus 48 -------vPtl~~--~~G~~v~---g~~----~~~~L~~~l~~~ 75 (87)
T 1ttz_A 48 -------VPVLRD--PMGRELD---WPF----DAPRLRAWLDAA 75 (87)
T ss_dssp -------CSEEEC--TTCCEEE---SCC----CHHHHHHHHHTC
T ss_pred -------cCeEEE--ECCEEEe---CCC----CHHHHHHHHHHH
Confidence 798776 6899874 333 456677776653
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0008 Score=55.19 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=45.8
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
..|+.|| ++|||+|....+.|.++.+++ ++.+.-|..| .+.+++..|+
T Consensus 30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId----------------------------~d~~l~~~yg 77 (107)
T 2fgx_A 30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINID----------------------------GNEHLTRLYN 77 (107)
T ss_dssp CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETT----------------------------TCHHHHHHST
T ss_pred cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECC----------------------------CCHHHHHHhC
Confidence 5688899 999999999999999888764 4444444433 2345667788
Q ss_pred CcccCCCcceeEEEEEcCCCcEE
Q psy224 466 VLNEETGIPYRGLFIIDDKQNLR 488 (547)
Q Consensus 466 v~~~~~g~~~p~~~lid~~G~v~ 488 (547)
+. +|+.+++ .+|+++
T Consensus 78 v~-------VP~l~~~-~dG~~v 92 (107)
T 2fgx_A 78 DR-------VPVLFAV-NEDKEL 92 (107)
T ss_dssp TS-------CSEEEET-TTTEEE
T ss_pred CC-------CceEEEE-ECCEEE
Confidence 64 7887666 478877
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=60.02 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=35.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
.++++|+.|| ..+||+|....+.+.++.+++.. ++++..+..
T Consensus 24 ~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred CCCeEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence 5788999999 99999999999999999888754 577766665
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0018 Score=69.02 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=60.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++.|+.|| +.|||+|+...|.+.++..++. ++.+.-|..+ ..++++.
T Consensus 116 ~~~~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~----------------------------~~~~~~~ 164 (521)
T 1hyu_A 116 DGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGG----------------------------TFQNEIT 164 (521)
T ss_dssp CSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETT----------------------------TCHHHHH
T ss_pred CCCcceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEech----------------------------hhHHHHH
Confidence 4677889999 9999999999999999887754 5666555443 2467888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. .+|+.++ +|+.+.. +.. ..+++++.++..
T Consensus 165 ~~~i~------svPt~~i---~g~~~~~--G~~----~~~~l~~~l~~~ 198 (521)
T 1hyu_A 165 ERNVM------GVPAVFV---NGKEFGQ--GRM----TLTEIVAKVDTG 198 (521)
T ss_dssp HTTCC------SSSEEEE---TTEEEEE--SCC----CHHHHHHHHCCS
T ss_pred HhCCC------ccCEEEE---CCEEEec--CCC----CHHHHHHHHhhc
Confidence 99987 5899876 7887744 332 456676666544
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0017 Score=60.93 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=54.6
Q ss_pred CCCCeEEEEE----EeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 382 YKGQYVVLFF----YPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 382 ~~gk~~ll~f----~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.++.++|++| | +.||++|...+|.+.++++++.+ ..+++..|.+ |.
T Consensus 19 ~~~~v~v~~~~~~~~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~----------------------------~~ 69 (229)
T 2ywm_A 19 FKEPVSIKLFSQAIG-CESCQTAEELLKETVEVIGEAVGQDKIKLDIYSP----------------------------FT 69 (229)
T ss_dssp CCSCEEEEEECCCTT-CGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECT----------------------------TT
T ss_pred ccCCeEEEEEccCCC-CcccHHHHHHHHHHHHHHhccCCCCceEEEEecC----------------------------cc
Confidence 3445555555 3 66777888889999999888853 2456655522 34
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
++++++.|+|. .+|+.++++ +|+....+.|..
T Consensus 70 ~~~l~~~~~v~------~~Ptl~~~~-~~~~~~~~~G~~ 101 (229)
T 2ywm_A 70 HKEETEKYGVD------RVPTIVIEG-DKDYGIRYIGLP 101 (229)
T ss_dssp CHHHHHHTTCC------BSSEEEEES-SSCCCEEEESCC
T ss_pred cHHHHHHcCCC------cCcEEEEEC-CCcccceecCCc
Confidence 57899999998 589999996 567666775654
|
| >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0013 Score=64.87 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=40.6
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+|+||||+|+|++|++++|.+|++ +.+.+.+.. ...++++++++.+...+..+
T Consensus 11 ~~~lGiDiGgT~i~~~l~d~~G~i-l~~~~~~~~------------~~~~~~~~~~~~l~~~i~~~ 63 (305)
T 1zc6_A 11 RYLIGVDGGGTGTRIRLHASDGTP-LAMAEGGAS------------ALSQGIAKSWQAVLSTLEAA 63 (305)
T ss_dssp CEEEEEEECSSCEEEEEEETTCCE-EEEEEESCC------------CGGGCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCccceEEEEEcCCCCE-EEEEeCCCC------------CcccCHHHHHHHHHHHHHHH
Confidence 499999999999999999999998 766543221 02367888998888777544
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0055 Score=54.78 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=40.6
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACST 426 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~ 426 (547)
.+.+....++++|+.|+ ..+||+|....+.+.++.++|.+. +++++....
T Consensus 19 ~~~~G~~~a~v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~ 69 (175)
T 1z6m_A 19 GLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 69 (175)
T ss_dssp SEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CcccCCCCCCeEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence 45666667899999999 999999999999999999888433 477777655
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0024 Score=49.44 Aligned_cols=36 Identities=11% Similarity=-0.068 Sum_probs=29.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
|+.|+ ++|||+|....+.|.++..+++ ++.+..+..
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi 38 (85)
T 1ego_A 3 TVIFG-RSGCPYCVRAKDLAEKLSNERD--DFQYQYVDI 38 (85)
T ss_dssp EEEEC-CTTSTHHHHHHHHHHHHHHHHS--SCEEEEECH
T ss_pred EEEEe-CCCCCCHHHHHHHHHHHHhcCC--CceEEEEec
Confidence 67788 9999999999999999887754 677777654
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0015 Score=64.21 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=41.6
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
|+||||+|+|++|++++|.+|++ +.+.+.++ +.+.+++++++++.+...+..
T Consensus 3 ~~lgiDiGgt~~~~~l~d~~g~i-~~~~~~~~-----------~~~~~~~~~~~~~~i~~~i~~ 54 (299)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDCEGNF-IGEGSSGP-----------GNYHNVGLTRAIENIKEAVKI 54 (299)
T ss_dssp CEEEEEECSSCEEEEEECTTSCE-EEEEEESC-----------CCHHHHCHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCcEEEEEEcCCCCE-EEEEeCCC-----------CCcccCCHHHHHHHHHHHHHH
Confidence 89999999999999999999998 77665443 112357889999988887754
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.002 Score=64.66 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=43.0
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
||++|+||||+|+|++|++++|.+|++ +.+.+.+. ....+++++++++.+...+..+
T Consensus 3 ~M~~~~lgiDiGgt~~~~~l~d~~g~i-~~~~~~~~-----------~~~~~~~~~~~~~~i~~~i~~~ 59 (347)
T 2ch5_A 3 FMAAIYGGVEGGGTRSEVLLVSEDGKI-LAEADGLS-----------TNHWLIGTDKCVERINEMVNRA 59 (347)
T ss_dssp SSSCEEEEEEECTTCEEEEEEETTSCE-EEEEEECC-----------CCHHHHCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEcCccceEEEEEeCCCCE-EEEEeCCC-----------CCcccCCHHHHHHHHHHHHHHH
Confidence 334599999999999999999999998 76654422 1123468899999888877654
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0066 Score=57.49 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=63.7
Q ss_pred CCCeEEEEEEeC--CCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPL--DFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~--~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.++++||.|| + +||+ ..|.+.++.++|+. .++.|+-|.+|... ++.+.+
T Consensus 21 ~~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g-----------------------~~~~~~ 72 (240)
T 2qc7_A 21 KSKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYG-----------------------DKLNME 72 (240)
T ss_dssp GCSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSS-----------------------SCCSHH
T ss_pred CCCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCccc-----------------------chhhHH
Confidence 3679999999 9 9998 88899999988874 35777777654300 012468
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCc--EEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQN--LRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~--v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++.|+|..+ .+|+.+++ ++|+ ....+.| .++.+.+++.+++.
T Consensus 73 l~~~~~V~~~----~~PTl~~f-~~G~~~~~~~y~G----~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 73 LSEKYKLDKE----SYPVFYLF-RDGDFENPVPYTG----AVKVGAIQRWLKGQ 117 (240)
T ss_dssp HHHHTTCCGG----GCSEEEEE-ETTCSSCCEECCS----CSCHHHHHHHHHHT
T ss_pred HHHHcCCCCC----CCCEEEEE-eCCCcCcceeecC----CCCHHHHHHHHHHh
Confidence 8899998721 28999999 5777 3344433 23567888877754
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0046 Score=49.95 Aligned_cols=80 Identities=5% Similarity=0.036 Sum_probs=51.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
.++.|+.|+ ++|||+|....+.|.++. .++.+.-|..+.+ .+.++.+.
T Consensus 15 ~~~~v~~f~-~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~~~--------------------------~~~el~~~ 62 (100)
T 1wjk_A 15 ALPVLTLFT-KAPCPLCDEAKEVLQPYK-----DRFILQEVDITLP--------------------------ENSTWYER 62 (100)
T ss_dssp CCCEEEEEE-CSSCHHHHHHHHHTSTTS-----SSSEEEEEETTSS--------------------------TTHHHHHH
T ss_pred CCCEEEEEe-CCCCcchHHHHHHHHHhh-----hCCeEEEEECCCc--------------------------chHHHHHH
Confidence 457788899 999999998888776543 2366666555421 23567778
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
|| . .+|+.+ + +|+.+ ..+.. +.+++.+.|+++
T Consensus 63 ~g-~------~vP~l~-~--~g~~~--~~~g~----~~~~l~~~l~~~ 94 (100)
T 1wjk_A 63 YK-F------DIPVFH-L--NGQFL--MMHRV----NTSKLEKQLRKL 94 (100)
T ss_dssp SS-S------SCSEEE-E--SSSEE--EESSC----CHHHHHHHHHSS
T ss_pred HC-C------CCCEEE-E--CCEEE--EecCC----CHHHHHHHHHHH
Confidence 88 5 479653 4 57765 22333 456676766643
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0032 Score=62.60 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=40.8
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
|+|+||||+|+|++|++++|.+|++ +.+.+.++ ..+++++++.+...+..+
T Consensus 1 M~~~lgiDiGgt~i~~~l~d~~G~i-~~~~~~~~---------------~~~~~~~~~~i~~~i~~~ 51 (321)
T 3vgl_A 1 MGLTIGVDIGGTKIAAGVVDEEGRI-LSTFKVAT---------------PPTAEGIVDAICAAVAGA 51 (321)
T ss_dssp -CEEEEEEECSSEEEEEEECTTCCB-CCCEEEEC---------------CSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCEEEEEEECCCCCE-EEEEEeeC---------------CCCHHHHHHHHHHHHHHH
Confidence 4699999999999999999999998 76655443 256888988888877654
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0064 Score=60.33 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=38.9
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
|+|+||||+|+|++|++++|.+|++ +.+.+.+++. ..+++++++.+...+..
T Consensus 5 ~~~~lgiDiggt~~~~~l~d~~g~i-l~~~~~~~~~-------------~~~~~~~~~~l~~~i~~ 56 (326)
T 2qm1_A 5 DKKIIGIDLGGTTIKFAILTTDGVV-QQKWSIETNI-------------LEDGKHIVPSIIESIRH 56 (326)
T ss_dssp GCEEEEEEECSSEEEEEEEETTCCE-EEEEEEECCC-------------TTTTTTHHHHHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEEECCCCCE-EEEEEEcCCC-------------CCCHHHHHHHHHHHHHH
Confidence 4699999999999999999999998 7777665521 24555666666655544
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.032 Score=56.01 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=70.5
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
++.+|+|+ +.||+.|....+.+.+++++|+.+ +.++.|.++.. ..+.+++.|
T Consensus 136 ~~~~v~F~-~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~--------------------------~~~~~~~~f 187 (361)
T 3uem_A 136 KTHILLFL-PKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHT--------------------------DNQRILEFF 187 (361)
T ss_dssp CEEEEEEC-CSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSG--------------------------GGHHHHHHT
T ss_pred CcEEEEEE-eCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChH--------------------------HHHHHHHHc
Confidence 46678888 999999999999999999999764 67777655431 135677889
Q ss_pred CCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh----hcCccccCCcc
Q psy224 465 GVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA----EHGEVCPAGWK 526 (547)
Q Consensus 465 ~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~----~~~~~~~~~w~ 526 (547)
|+... ..|+..+++.++.. ..+.. .....+.+++.+.++...... ......|..|.
T Consensus 188 gi~~~----~~P~~~~~~~~~~~-~ky~~-~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~ 247 (361)
T 3uem_A 188 GLKKE----ECPAVRLITLEEEM-TKYKP-ESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWD 247 (361)
T ss_dssp TCCTT----TCSEEEEEECC--C-CEECC-SSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTT
T ss_pred CCCcc----CCccEEEEEcCCcc-cccCC-CccccCHHHHHHHHHHHhcCCCcccccCCCCCcccc
Confidence 98721 27999999864432 23311 112346778888877754211 12345566664
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0041 Score=60.50 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=54.0
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.+.+++...+..++.|| ++|||+|+...|.+.++.++++ -|.+|. .+.+ |
T Consensus 189 ~~~la~~l~~~~vV~F~-A~WC~~Ck~l~p~le~lA~~l~-------~Vd~d~-------------------~d~~---~ 238 (291)
T 3kp9_A 189 AVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQVP-------YVECSP-------------------NGPG---T 238 (291)
T ss_dssp HHHHHHHHHHTTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-------EEESCS-------------------SCSS---S
T ss_pred HHHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHHHHHHHcC-------EEEEee-------------------cCch---h
Confidence 34555543333478999 9999999999999998865431 122221 0000 3
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+++++++|++. .+|+.++ +|+. +.|.. +.+++.+.+
T Consensus 239 ~~~~la~~~gI~------~vPT~~i---~G~~---~~G~~----~~~~L~~~l 275 (291)
T 3kp9_A 239 PQAQECTEAGIT------SYPTWII---NGRT---YTGVR----SLEALAVAS 275 (291)
T ss_dssp CCCHHHHTTTCC------STTEEEE---TTEE---EESCC----CHHHHHHHT
T ss_pred hHHHHHHHcCCc------ccCeEEE---CCEE---ecCCC----CHHHHHHHH
Confidence 367899999998 5899554 6763 43433 455655553
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.079 Score=50.26 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCCeEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYP-LDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~-~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.++++||.||- ++||+ ..|.+.++.++|.. .++.|+-|.++...+ ..+.+
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~-----------------------~~n~~ 84 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGE-----------------------LENKA 84 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTT-----------------------CTTHH
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccc-----------------------cccHH
Confidence 45788888885 68887 88899999998864 457777776654100 01467
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNL--RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v--~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++.|+|..+ .+||.+++. |++ ...+ ...-.++.+++.+.+++.
T Consensus 85 la~~~~V~~~----~~PTl~~F~--G~~~~~~~y--~~~G~~~~~~L~~fi~~~ 130 (248)
T 2c0g_A 85 LGDRYKVDDK----NFPSIFLFK--GNADEYVQL--PSHVDVTLDNLKAFVSAN 130 (248)
T ss_dssp HHHHTTCCTT----SCCEEEEES--SSSSSEEEC--CTTSCCCHHHHHHHHHHH
T ss_pred HHHHhCCCcC----CCCeEEEEe--CCcCcceee--cccCCCCHHHHHHHHHHh
Confidence 8899998721 289999995 773 2222 011234677888887754
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.024 Score=55.43 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=37.2
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
+|+||||+|+|++|++++|.+|++ +.+.+.+++ ..+++++++.+...+.
T Consensus 4 m~~lgiDiGgt~i~~~l~d~~G~i-l~~~~~~~~--------------~~~~~~~~~~i~~~~~ 52 (297)
T 4htl_A 4 MKIAAFDIGGTALKMGVVLPHGEI-ILTKSAEIS--------------GSDGDQILAEMKVFLA 52 (297)
T ss_dssp CCEEEEEECSSEEEEEEECTTSCE-EEEEEEECS--------------TTCHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCeEEEEEECCCCCE-EEEEEecCC--------------CCCHHHHHHHHHHHHh
Confidence 589999999999999999999998 777665541 1234667776666553
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.028 Score=55.88 Aligned_cols=50 Identities=14% Similarity=0.322 Sum_probs=40.6
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
|+||||+|+|++|++++|.+|++ +.+.+.+++ ..+++++++.+...+..+
T Consensus 25 ~~lgiDiGgt~i~~~l~d~~G~i-l~~~~~~~~--------------~~~~~~~~~~i~~~i~~~ 74 (327)
T 4db3_A 25 MYYGFDVGGTKIEFGAFNEKLER-VATERVPTP--------------TDDYPLLLETIAGLVAKY 74 (327)
T ss_dssp CEEEEEECSSEEEEEEECTTCCE-EEEEEEECC--------------TTCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCEEEEEEEeCCCcE-EEEEEecCC--------------CCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999998 777665542 236888888888777654
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.018 Score=56.52 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=36.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
||+||||+|+|++|++++|.+ ++ +...+.+++ ..+++++++.+...+..+
T Consensus 1 M~~lgiDiGgt~i~~~l~d~~-~~-l~~~~~~~~--------------~~~~~~~~~~i~~~i~~~ 50 (302)
T 3vov_A 1 MKVVGLDLGGTKIAAGVFDGK-RL-LSKVVVPTP--------------KEGGERVAEALAEAAERA 50 (302)
T ss_dssp CCEEEEEECSSEEEEEEECSS-SB-SCCEEEECC--------------SSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCEEEEEEEeCC-Cc-EEEEEEcCC--------------CCChHHHHHHHHHHHHHH
Confidence 379999999999999999988 56 555554442 223367777777776544
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.058 Score=51.03 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=45.4
Q ss_pred CCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHhh-CC---cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 384 GQYVVLFFYPLDF--TFVCPTEIIAFSDRAEEFKK-IN---TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 384 gk~~ll~f~~~~~--cp~C~~~~~~l~~~~~~~~~-~~---~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
+++++|.|| +.| |++|....+.+.++.+.+.. +| +.++-+. .|.+
T Consensus 25 ~~pv~v~~~-~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd----------------------------~d~~ 75 (243)
T 2hls_A 25 VNPVEVHVF-LSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYY----------------------------RESD 75 (243)
T ss_dssp CSCEEEEEE-ECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEE----------------------------TTTT
T ss_pred CCCEEEEEE-eCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEec----------------------------CCcC
Confidence 468899999 999 99999998888888876421 11 3333222 2345
Q ss_pred hHHHHHhCCcccCCCcceeEEEEE
Q psy224 458 MSIARSYGVLNEETGIPYRGLFII 481 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~li 481 (547)
+++++.|||. .+|+..++
T Consensus 76 ~~~~~~~gv~------~~Pt~~i~ 93 (243)
T 2hls_A 76 SDKFSEFKVE------RVPTVAFL 93 (243)
T ss_dssp HHHHHHTTCC------SSSEEEET
T ss_pred HHHHHhcCCC------cCCEEEEE
Confidence 7888999998 48998888
|
| >2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.031 Score=55.86 Aligned_cols=50 Identities=10% Similarity=0.230 Sum_probs=38.4
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.|+||||+|+|++|++++|.+|++ +.+.+.++ .++++++++.+.+.+..+
T Consensus 30 ~~~lgiDiGgt~i~~~l~d~~G~i-l~~~~~~~---------------~~~~~~~~~~i~~~i~~~ 79 (343)
T 2yhw_A 30 LSALAVDLGGTNLRVAIVSMKGEI-VKKYTQFN---------------PKTYEERINLILQMCVEA 79 (343)
T ss_dssp EEEEEEEECSSEEEEEEEETTSCE-EEEEEEEC---------------CSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEEECCCEEEEEEECCCCcE-EEEEEEcC---------------CCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 76655433 135777777777766543
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.041 Score=55.87 Aligned_cols=52 Identities=25% Similarity=0.422 Sum_probs=41.9
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.|+||||+|+|++|++++|.+|++ +.+.+.+++ .+++++++++.+...+..+
T Consensus 87 ~~~lGIDiGgt~i~~~l~d~~G~v-l~~~~~~~~-------------~~~~~~~~~~~l~~~i~~~ 138 (380)
T 2hoe_A 87 AYVLGIEVTRDEIAACLIDASMNI-LAHEAHPLP-------------SQSDREETLNVMYRIIDRA 138 (380)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCE-EEEEEEECC-------------SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCEEEEEEECCCCCE-EEEEEEccC-------------CCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 777665552 1357888888887777654
|
| >2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.044 Score=53.24 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=40.7
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
++||||+|.|++|++++|.+|++ +.+.+.+++ ...+++++++.+.+.+..+
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~i-l~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~ 52 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQI-RDRRELPTP-------------ASQTPEALRDALSALVSPL 52 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCCE-EEEEEEECC-------------SSCCHHHHHHHHHHHHTTT
T ss_pred eEEEEEeCCCEEEEEEECCCCCE-EEEEEecCC-------------CCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999998 777665542 1235788888888887655
|
| >2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.8 Score=43.79 Aligned_cols=123 Identities=18% Similarity=0.227 Sum_probs=71.9
Q ss_pred CCchhhhhhccccc-C-CCcEEEeccchhhhhhcc-----cccccccchhHHHHHhHHHHHHHHhCCCCchhHHHHHHHh
Q psy224 169 LGDLQCSVLATLQY-H-SDAIVNISTSAQIAFIDE-----MGASMNGGNCLATFVCTLQNWFKEFGFNVPQNQIWAKLIN 241 (547)
Q Consensus 169 ~~D~~aa~~g~g~~-~-~~~~is~GTs~~~~~~~~-----~~~~~~gg~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~ 241 (547)
+.|-.++++|+-.. + .-+++..||...+-++++ +|...+|-... .+.+.+
T Consensus 107 G~DR~~~~vaA~~~~~~~~iVVD~GTAtT~d~v~~~g~~lGG~I~PGi~l~-----------------------~~AL~~ 163 (268)
T 2h3g_X 107 GADRIVNAVAGIHLYGSPLIIVDFGTATTYCYINEEKHYMGGVITPGIMIS-----------------------AEALYS 163 (268)
T ss_dssp CHHHHHHHHHHHHHHCSSEEEEEESSEEEEEEECTTSEEEEEEEEECHHHH-----------------------HHHHHC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCceEEEEECCCCcEEEEEECccHHHH-----------------------HHHHHH
Confidence 45888888887553 3 458999999999987765 34444442211 122211
Q ss_pred ccCcccccccCCCCeEEecCccCcccCCCCCceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEee
Q psy224 242 ASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGI 320 (547)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~ 320 (547)
. .++. |.+.-++ | ... +.. + |...|-..++-|++..+..++++ .-++.+ .-+|+++
T Consensus 164 ~---Ta~L----------p~v~~~~-p----~~~--~g~-n-T~~ai~sGi~~g~~g~i~~~i~~-~~~e~~~~~~vi~T 220 (268)
T 2h3g_X 164 R---AAKL----------PRIEITK-P----SSV--VGK-N-TVSAMQSGILYGYVGQVEGIVKR-MKEEAKQEPKVIAT 220 (268)
T ss_dssp --------------------CCCCC-C----SCS--SCS-S-HHHHHHHHHHHHHHHHHHHHHHH-HHHHCSSCCEEEEE
T ss_pred H---HhcC----------CCccccC-C----CCC--CCc-C-HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 1 1111 2211111 1 111 112 2 78889999999999999888885 233455 4589999
Q ss_pred CCchhhcHHHHHHHHHHhCCceEE
Q psy224 321 GSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 321 GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
||. .++++..+..+..+
T Consensus 221 GG~-------a~~l~~~~~~~~~~ 237 (268)
T 2h3g_X 221 GGL-------AKLISEESNVIDVV 237 (268)
T ss_dssp STT-------HHHHHHHCSSCSEE
T ss_pred CCC-------HHHHHhhCCCCCEE
Confidence 996 55667666654444
|
| >3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.01 Score=58.60 Aligned_cols=32 Identities=41% Similarity=0.700 Sum_probs=27.7
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
.++||||+|+|++|++++|.+|++ +.+.+.++
T Consensus 7 ~~~lgiDiGgt~i~~~l~d~~G~i-l~~~~~~~ 38 (310)
T 3htv_A 7 NVVAGVDMGATHIRFCLRTAEGET-LHCEKKRT 38 (310)
T ss_dssp EEEEEEEECSSEEEEEEEETTSCE-EEEEEEEH
T ss_pred CEEEEEEeCCCEEEEEEECCCCCE-EEEEEecC
Confidence 489999999999999999999998 77665544
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.028 Score=57.66 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=38.7
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
..|+||||+|+|++|++++|.+|++ +.+.+.+++ +++++++++.+...+..+
T Consensus 84 ~~~~lgiDiG~t~i~~~l~d~~G~i-l~~~~~~~~--------------~~~~~~~~~~l~~~i~~~ 135 (406)
T 1z6r_A 84 AWHYLSLRISRGEIFLALRDLSSKL-VVEESQELA--------------LKDDLPLLDRIISHIDQF 135 (406)
T ss_dssp TCEEEEEEEETTEEEEEEEETTCCE-EEEEEEECC--------------SSCSSCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCEEEEEEEcCCCCE-EEEEEecCC--------------CCCHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998 776655541 234556677666665543
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.052 Score=56.10 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=40.7
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.|+||||+|+|++|++++|.+|++ +.+.+.+++ .++++++++.+...+..+
T Consensus 108 ~~~lGIDiGgt~i~~~l~d~~G~i-l~~~~~~~~--------------~~~~~~~~~~l~~~i~~~ 158 (429)
T 1z05_A 108 WQFLSMRLGRGYLTIALHELGGEV-LIDTKIDIH--------------EIDQDDVLARLLFEIEEF 158 (429)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCE-EEEEEEECC--------------CCBHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCEEEEEEECCCCCE-EEEEEEcCC--------------CCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 776655541 236888888887776554
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.27 Score=43.95 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=68.0
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
.-.+|+++|+++ ..+|+.|..-...+ .++.+-++ .++.+++.+.+..+..+.+...... .+ .
T Consensus 52 k~e~K~LlVyLh-s~~~~~~~~f~~~~L~~~~V~~~l~-~nfV~w~~dv~~~e~~~~~~~~~~~-----~~--------g 116 (178)
T 2ec4_A 52 ARDRKLLAIYLH-HDESVLTNVFCSQMLCAESIVSYLS-QNFITWAWDLTKDSNRARFLTMCNR-----HF--------G 116 (178)
T ss_dssp TTTCCEEEEEEE-CSSCSHHHHHHHHTTTCHHHHHHHH-HTEEEEEEECCSHHHHHHHHHHHHH-----HT--------C
T ss_pred hhhCcEEEEEEe-CCCCccHHHHHHHhcCCHHHHHHHH-cCEEEEEEeCCCchhhhhhhhhhhh-----hh--------H
Confidence 335799999999 99999987654332 12222222 3788889888887655544433210 00 1
Q ss_pred hHHH---HHhCCcccCCCcceeEEEEEcCCC---cEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 458 MSIA---RSYGVLNEETGIPYRGLFIIDDKQ---NLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 458 ~~~~---~~~~v~~~~~g~~~p~~~lid~~G---~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
..++ +.|++. .+|...+|++.| +++....|.. +.+++++.|++.
T Consensus 117 ~~~a~~~~~~~~~------~~P~l~ii~~~~~~~~vl~~~~G~~----~~~~ll~~L~~~ 166 (178)
T 2ec4_A 117 SVVAQTIRTQKTD------QFPLFLIIMGKRSSNEVLNVIQGNT----TVDELMMRLMAA 166 (178)
T ss_dssp HHHHHHHHHSCST------TCSEEEEECCCSSCCCEEEEECSCC----CHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCC------CCCeEEEEEcCCCceEEEEEEeCCC----CHHHHHHHHHHH
Confidence 2333 447776 489999998764 7788887665 467777776654
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.025 Score=56.07 Aligned_cols=51 Identities=27% Similarity=0.243 Sum_probs=37.4
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
..|+||||+|+|++|++++|.+|++ +...+.+++ ...+++++++.+.+.+.
T Consensus 18 ~~~~lgidiggt~i~~~l~d~~g~i-l~~~~~~~~-------------~~~~~~~~~~~i~~~i~ 68 (321)
T 3r8e_A 18 QGMILGIDVGGTSVKFGLVTPEGEI-QNATRFMTA-------------DWVNGIGFVESMKLEIG 68 (321)
T ss_dssp -CCEEEEECCSSEEEEEEECTTCCE-EEEEEEEHH-------------HHHTTTCHHHHHHHHHH
T ss_pred CcEEEEEEECCCEEEEEEEcCCCcE-EEEEEEeCC-------------CCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999998 777766552 12345556666555544
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.066 Score=46.42 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=30.3
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEE
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIAC 424 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~i 424 (547)
|.+..-.++++|+.|. -.+||+|....+.+.++ . +++++.+
T Consensus 7 i~~~~~~a~~~vv~f~-D~~Cp~C~~~~~~l~~l----~--~v~v~~~ 47 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFS-DPDCPFCKRLEHEFEKM----T--DVTVYSF 47 (147)
T ss_dssp EEEEETTCCEEEEEEE-CTTCHHHHHHHHHHTTC----C--SEEEEEE
T ss_pred eeeecCCCCEEEEEEE-CCCChhHHHHHHHHhhc----C--ceEEEEE
Confidence 4444445789999999 99999999999988654 2 4555544
|
| >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.044 Score=53.36 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=35.1
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
++||||+|+|++|++++| +|++ +.+.+.+.. . ....+++.+++.+...+.
T Consensus 1 ~~lgiDiGGT~~~~~l~d-~g~i-l~~~~~~~~---------~--~~~~~~~~~~~~i~~~i~ 50 (291)
T 1zbs_A 1 MILIGDSGSTKTDWCIAK-EGKS-LGRFQTSGI---------N--PFQQDRNEIDTALRSEVL 50 (291)
T ss_dssp CEEEEEECSSEEEEEEEE-TTEE-EEEEEEECC---------C--TTTSCHHHHHHHHTTTTH
T ss_pred CEEEEEeCccceEEEEEe-CCeE-EEEEECCCC---------C--cccCCHHHHHHHHHHHHH
Confidence 379999999999999999 9987 766654321 0 113467777776665554
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.028 Score=51.23 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=36.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
.++++|+.|| ..|||+|....|.+.++.+++.+ ++.+.-+..+
T Consensus 23 ~~~v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence 4789999999 99999999999999999888876 5777777664
|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.073 Score=51.71 Aligned_cols=49 Identities=24% Similarity=0.406 Sum_probs=38.2
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
|++||||+|.|++|++++|.+|++ +.+.+.+. + .+++++.+.+...+..
T Consensus 4 m~~lgidiggt~i~~~l~d~~g~i-l~~~~~~~-----------~----~~~~~~~~~i~~~i~~ 52 (292)
T 2gup_A 4 MTIATIDIGGTGIKFASLTPDGKI-LDKTSIST-----------P----ENLEDLLAWLDQRLSE 52 (292)
T ss_dssp CCEEEEEEETTEEEEEEECTTCCE-EEEEEECC-----------C----SSHHHHHHHHHHHHTT
T ss_pred cEEEEEEECCCEEEEEEECCCCCE-EEEEEEeC-----------C----CCHHHHHHHHHHHHHh
Confidence 368999999999999999999998 76654333 1 4577888888777653
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.17 Score=42.73 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
|+.|+ ++|||+|....+.|.++
T Consensus 29 vvvf~-~~~Cp~C~~~~~~L~~~ 50 (130)
T 2cq9_A 29 VVIFS-KTSCSYCTMAKKLFHDM 50 (130)
T ss_dssp EEEEE-CSSCSHHHHHHHHHHHH
T ss_pred EEEEE-cCCChHHHHHHHHHHHc
Confidence 34488 99999999887776654
|
| >3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.13 Score=51.72 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=39.9
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccc-ccccccCCCCcCCCCCCccccCHHHHHHHHHH---HHhhC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSE-SKDTQANIPSAHDSNPGAHEQNVRKIVSTLHN---CILRL 69 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~-~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~---~i~~~ 69 (547)
..++||||+|.|++|++++| +|++ +.+. +.+++ .. +++++++.+.+ .+..+
T Consensus 8 ~~~~lgiDIGgt~i~~~l~d-~G~i-l~~~~~~~~~-------------~~-~~~~~l~~i~~~~~~i~~~ 62 (366)
T 3mcp_A 8 NRIVMTLDAGGTNFVFSAIQ-GGKE-IADPVVLPAC-------------AD-CLDKCLGNLVEGFKAIQAG 62 (366)
T ss_dssp CCEEEEEECSSSEEEEEEEE-TTEE-CSCCEEEECC-------------TT-CHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECcceEEEEEEE-CCEE-EEEEEEEECC-------------CC-CHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999 9987 7665 54441 12 78888888888 66554
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.07 Score=40.50 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=23.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|+.|+ ++|||+|....+.|.+ .++.+..+..+.
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 35 (81)
T 1h75_A 3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDR 35 (81)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCC
Confidence 56788 9999999988776654 356665665553
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=93.18 E-value=0.11 Score=42.54 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=17.1
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHH
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSD 409 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~ 409 (547)
.|+.|+ ++|||+|....+.|.+
T Consensus 20 ~vv~f~-~~~Cp~C~~~~~~L~~ 41 (114)
T 2hze_A 20 KVTIFV-KYTCPFCRNALDILNK 41 (114)
T ss_dssp CEEEEE-CTTCHHHHHHHHHHTT
T ss_pred CEEEEE-eCCChhHHHHHHHHHH
Confidence 467788 9999999977665543
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.15 Score=50.43 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=38.2
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
.++||||+|.|++|++++|.+|++ +.+.+.+.+ . .+++++++.+...+..
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~~g~i-l~~~~~~~~---------~-----~~~~~~~~~i~~~i~~ 73 (327)
T 2ap1_A 24 AMYYGFDIGGTKIALGVFDSTRRL-QWEKRVPTP---------H-----TSYSAFLDAVCELVEE 73 (327)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCE-EEEEEEECC---------C-----SCHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCEEEEEEEeCCCCE-EEEEEecCC---------C-----CCHHHHHHHHHHHHHH
Confidence 579999999999999999999998 776655541 1 1466777777776654
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.016 Score=53.16 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=36.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~ 428 (547)
.++++||.|| +.|||+|....|.+ .++.+++.+ ++.+.-+..+.
T Consensus 112 ~~~~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~~ 158 (197)
T 1un2_A 112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVNF 158 (197)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECSS
T ss_pred CCCCEEEEEE-CCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccCc
Confidence 4689999999 99999999999988 888877754 67777777653
|
| >1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.17 Score=48.48 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=36.2
Q ss_pred ceEEEEEeCCceeEEEEEecC-CCeeecc-cccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDAN-TREELSS-ESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~-g~~~l~~-~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+|+||||+|+|++|++++|.+ |++ +.. .+.+++ ...+++.+++.+.+.+..+
T Consensus 12 ~~~lgidiggt~i~~~l~dl~~g~i-~~~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~ 65 (267)
T 1woq_A 12 APLIGIDIGGTGIKGGIVDLKKGKL-LGERFRVPTP-------------QPATPESVAEAVALVVAEL 65 (267)
T ss_dssp CCEEEEEECSSEEEEEEEETTTTEE-EEEEEEEECC-------------SSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCEEEEEEEECCCCeE-EEEEEecCCC-------------ccCCHHHHHHHHHHHHHHH
Confidence 579999999999999999987 565 532 232321 1245777777777776554
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.38 Score=37.82 Aligned_cols=33 Identities=6% Similarity=0.042 Sum_probs=22.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|. .+|||+|...-.-|. ++|+.+--+..+.
T Consensus 6 I~vYs-~~~Cp~C~~aK~~L~-------~~gi~y~~idi~~ 38 (92)
T 2lqo_A 6 LTIYT-TSWCGYCLRLKTALT-------ANRIAYDEVDIEH 38 (92)
T ss_dssp EEEEE-CTTCSSHHHHHHHHH-------HTTCCCEEEETTT
T ss_pred EEEEc-CCCCHhHHHHHHHHH-------hcCCceEEEEcCC
Confidence 56677 999999987655443 3466655555543
|
| >2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.11 Score=52.40 Aligned_cols=53 Identities=13% Similarity=0.299 Sum_probs=38.2
Q ss_pred CceEEEEEeCCceeEEEEEec----CCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDA----NTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPK 71 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~----~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~ 71 (547)
|+++||||+|+|++|++++|. +|++ +...+. ++ . .+++.+.+.+...+..+..
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~i-l~~~~~-~~---------~-----~~~~~~~~~i~~~i~~~~~ 84 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVREGKNDSVHA-CVTRYS-MK---------R-----KDITEIIEFFNEIIELMPA 84 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEECGGGCEEE-EEEEEE-CT---------T-----CBGGGHHHHHHHHHHHSCH
T ss_pred CCeEEEEEEccccEEEEEEecccCCCccE-EEEeee-cC---------C-----CCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999998 8887 654431 11 1 3456677777777765543
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.34 Score=46.81 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHH---hCCceEEecchhhhhh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERI---YGLQLIVEQDQAMRDA 353 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~---l~~~v~~~~~~~~~~a 353 (547)
.++++++++++.+++..+...... ..+..++++|+.+||-+++|+.+++.+.+. .+..+.+++.++...|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~-~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gA 279 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAIT-VAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGA 279 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHH
Confidence 389999999999998888776542 233466789999999338999999999997 5888988888887554
|
| >2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A | Back alignment and structure |
|---|
Probab=92.46 E-value=0.18 Score=52.24 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=37.5
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
..|||||+|+|++|+++++.+|+.-....+..++. | . .....+++++++.+..+|..+
T Consensus 61 G~~laiDlGGTnirv~lV~~~G~~~~~~~~~~~~i--p-----~-~~~~~~~~~lfd~Ia~~i~~~ 118 (457)
T 2yhx_A 61 GSFLAIVMGGGDLEVILISLAGRQESSIXASRSLA--A-----A-MSTTAIPSDLWGNXAXSNAAF 118 (457)
T ss_dssp EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECC--T-----T-TTSCSCTHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCeEEEEEEEeCCCeeEEEeeEEEEc--C-----C-ccCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999987511111222221 1 1 112336778888887777654
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.097 Score=42.01 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRA 411 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~ 411 (547)
|+.|+ ++|||+|....+.|.++.
T Consensus 14 v~~f~-~~~C~~C~~~~~~L~~~~ 36 (105)
T 1kte_A 14 VVVFI-KPTCPFCRKTQELLSQLP 36 (105)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHSC
T ss_pred EEEEE-cCCCHhHHHHHHHHHHcC
Confidence 66788 999999998877776543
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=92.20 E-value=0.12 Score=38.35 Aligned_cols=32 Identities=6% Similarity=0.084 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
++.|+ ++|||+|....+.|.++ ++.+..+..+
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~~-------~i~~~~~di~ 34 (75)
T 1r7h_A 3 ITLYT-KPACVQCTATKKALDRA-------GLAYNTVDIS 34 (75)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEETT
T ss_pred EEEEe-CCCChHHHHHHHHHHHc-------CCCcEEEECC
Confidence 56678 99999999887776643 5555555554
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.2 Score=43.25 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
|+.|+ ++|||+|....+.|.++
T Consensus 51 Vvvf~-~~~Cp~C~~~k~~L~~~ 72 (146)
T 2ht9_A 51 VVIFS-KTSCSYCTMAKKLFHDM 72 (146)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCChhHHHHHHHHHHc
Confidence 44488 99999999887777654
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.22 Score=41.20 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=12.8
Q ss_pred EEEEEeCCCCCCcHHH
Q psy224 388 VLFFYPLDFTFVCPTE 403 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~ 403 (547)
|+.|+ ++|||+|...
T Consensus 27 Vvvf~-~~~Cp~C~~a 41 (118)
T 3c1r_A 27 IFVAS-KTYCPYCHAA 41 (118)
T ss_dssp EEEEE-CSSCHHHHHH
T ss_pred EEEEE-cCCCcCHHHH
Confidence 56688 9999999986
|
| >3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.19 Score=46.94 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=34.8
Q ss_pred CC-CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
|+ +.++||||+|.|++| ++|.+|++ . .+.+++ ...+++.+.+.+.+.+..
T Consensus 2 m~~~~~~lgiDIGGT~i~--~~d~~g~~-~--~~~~t~-------------~~~~~~~~~~~i~~~i~~ 52 (226)
T 3lm2_A 2 MAEDQTVLAIDIGGSHVK--IGLSTDGE-E--RKVESG-------------KTMTGPEMVAAVTAMAKD 52 (226)
T ss_dssp CGGGCCEEEEEECSSEEE--EEETTTCC-E--EEEECC-------------TTCCHHHHHHHHHHHTTT
T ss_pred CCcCCEEEEEEECCCEEE--EEECCCCE-E--EEEECC-------------CCCCHHHHHHHHHHHHHh
Confidence 54 468999999999999 57888865 2 223321 245678888888776643
|
| >1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=92.03 E-value=0.065 Score=52.14 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=22.2
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeeccccc
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESK 34 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~ 34 (547)
++||||+|+|++|++++| +|++ +.+.+.
T Consensus 1 ~~lgiDiGGT~i~~~l~d-~g~i-l~~~~~ 28 (291)
T 1zxo_A 1 MILIADSGSTKTDWCVVL-NGAV-IKRLGT 28 (291)
T ss_dssp ---CEECCTTCEEEEEEC-SSSE-EEEEEE
T ss_pred CEEEEEeccccEEEEEEc-CCeE-EEEEEC
Confidence 479999999999999999 9998 766554
|
| >1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.13 Score=51.15 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCceEEEEEeCCceeEEEEEec-CCCeeecccc
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDA-NTREELSSES 33 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~ 33 (547)
+|.|+||||+|.|++|++++|. +|++ +...+
T Consensus 12 ~~~~~lgiDiGGT~i~~~l~dl~~g~i-~~~~~ 43 (332)
T 1sz2_A 12 STKYALVGDVGGTNARLALCDIASGEI-SQAKT 43 (332)
T ss_dssp --CEEEEEEEETTEEEEEEEETTTCCE-EEEEE
T ss_pred CCCEEEEEEechhheEEEEEECCCCcE-EEEEE
Confidence 4679999999999999999994 7887 65443
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.45 Score=36.89 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=16.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
|..|+ ++|||+|......|.++
T Consensus 14 v~ly~-~~~Cp~C~~~~~~L~~~ 35 (92)
T 3ic4_A 14 VLMYG-LSTCPHCKRTLEFLKRE 35 (92)
T ss_dssp SEEEE-CTTCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 56677 99999999877666543
|
| >3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.33 Score=52.04 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=28.1
Q ss_pred ceEEEEEeCCceeEEEEEec-CCCeeeccccccccc
Q psy224 4 QVVLGIDIGTTSVKVCLIDA-NTREELSSESKDTQA 38 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~~~~~~ 38 (547)
.|=++||||||++.+.|+|. +|++ +++.+...+.
T Consensus 206 ~~GlAvDiGTTtv~~~LvdL~tG~~-l~~~~~~NpQ 240 (631)
T 3zyy_X 206 VFGLAIDIGTTTVVVQLVDLVSGKV-LGTKGNYNKQ 240 (631)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCE-EEEEEEECGG
T ss_pred ceEEEEEecccceeEEEEECCCCCE-EEeecccCCC
Confidence 46799999999999999995 6877 8887766643
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=91.51 E-value=0.29 Score=46.36 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~ 323 (547)
|...|-..++-|++..+...++++ -++...-+|+++||.
T Consensus 182 T~~ai~sGi~~g~~g~i~~~i~~~-~~~~~~~~vi~TGG~ 220 (249)
T 3bex_A 182 TEENIRLGVVNGSVYALEGIIGRI-KEVYGDLPVVLTGGQ 220 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCEEEEECCC
Confidence 788888899999999988888751 233434579999996
|
| >3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.55 Score=46.78 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC-CceEEec
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG-LQLIVEQ 346 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~-~~v~~~~ 346 (547)
.+++++.+-+.|-+|.++.+.++. +.. ..++|+++||| ++|+.+++.++..+. .+|...+
T Consensus 256 ls~~Dv~ATLt~~TA~sIa~~~~~--~~~-~~~~v~vcGGG-a~N~~Lm~~L~~~l~~~~v~~~d 316 (371)
T 3qbx_A 256 LPAADIQATLLELSARSISESLLD--AQP-DCEEVLVCGGG-AFNTALMKRLAMLMPEARVASTD 316 (371)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH--HCT-TCCEEEEESGG-GGCHHHHHHHHHHCTTSEEEEGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh--ccC-CCceEEEECCc-cCcHHHHHHHHHhCCCCEEeCHH
Confidence 479999999999999998887763 322 36799999999 999999999999884 5565543
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=0.28 Score=48.88 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC------CceEEecchhhhhh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG------LQLIVEQDQAMRDA 353 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~------~~v~~~~~~~~~~a 353 (547)
.++++++++++.+|+..+.+..-. ..+..++++|+++||-+++|+..++.++..++ .++..++.++...|
T Consensus 276 ~~~eDIa~gll~sVa~~I~~lA~l-~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GA 351 (360)
T 2i7n_A 276 ISKEDLARATLVTITNNIGSIARM-CALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGA 351 (360)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHH
Confidence 479999999999999998887541 22345678999999933999999999999985 68888888776554
|
| >3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.85 E-value=0.51 Score=47.02 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh-CCceEE
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY-GLQLIV 344 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l-~~~v~~ 344 (547)
+++++.+-+.|-.|.++.+.++. +. +..+|+++||| ++|+.+++.++..+ +.+|..
T Consensus 264 ~~~Dv~ATLt~~TA~sIa~~~~~--~~--~~~~v~vcGGG-a~N~~Lm~~L~~~l~~~~v~~ 320 (370)
T 3cqy_A 264 NEEDIQSTLLDLTCHSIAQDILK--LA--QEGELFVCGGG-AFNAELMQRLAALLPGYRIDT 320 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--HC--SSEEEEEESGG-GGCHHHHHHHHHHCTTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh--cC--CCCEEEEECCC-cCCHHHHHHHHHhCCCCeeee
Confidence 68999999999999999998873 42 45699999999 99999999999988 445543
|
| >1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3 | Back alignment and structure |
|---|
Probab=90.60 E-value=0.42 Score=49.46 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=36.1
Q ss_pred ceEEEEEeCCceeEEEEEecCC-Ce--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANT-RE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g-~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
..|||||+|+|++|+++++.+| +- .+...+.+.+. .....+.+++++-+..+|..+
T Consensus 68 G~~lalDlGGTn~Rv~~V~l~G~~~~~~i~~~~~~ip~----------~~~~~~~~~lfd~Ia~~i~~~ 126 (451)
T 1bdg_A 68 GNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPA----------EKMSGSGTELFKYIAETLADF 126 (451)
T ss_dssp EEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCT----------TTTTSBHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCeEEEEEEecCCCCcceEEEEEEEecCC----------cccCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999988 51 01122222211 112346677887777776654
|
| >3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.42 Score=45.71 Aligned_cols=39 Identities=15% Similarity=0.402 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh--cC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR--SG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~--~g-~~~I~~~GG~ 323 (547)
|...|-..++-|.+..+...+++ .-++ .+ .-+|+++||.
T Consensus 186 T~~ai~sGi~~g~~g~i~~~i~~-~~~~~~~~~~~~vi~TGG~ 227 (266)
T 3djc_A 186 TIESIQSGVYYGVLGACKELIQR-IHHEAFNGDQILILATGGF 227 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHTTTTCCEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCEEEEECCC
Confidence 78889999999999999998885 2334 45 4589999996
|
| >1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=0.22 Score=50.42 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=26.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
|+++||||+|+|++|++++|.+ ++ +...+.++
T Consensus 1 m~~vlgidiGgt~ik~al~d~~-~i-l~~~~~~~ 32 (381)
T 1saz_A 1 MFRILTINPGSTSTKLSIFEDE-RM-VKMQNFSH 32 (381)
T ss_dssp CCEEEEEEECSSEEEEEEEETT-EE-EEEEEEEC
T ss_pred CCeEEEEECCccceeEEEEecc-hh-eeeeeccc
Confidence 3589999999999999999975 66 77766655
|
| >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=89.76 E-value=0.072 Score=48.23 Aligned_cols=43 Identities=7% Similarity=0.083 Sum_probs=33.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d 427 (547)
.++++|+.|| ..|||+|....|.+ .++.+++.+ +++++-+...
T Consensus 13 ~~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 58 (189)
T 3l9v_A 13 VDAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS 58 (189)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred CCCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence 4588999999 99999999999986 466665654 5777777654
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=89.73 E-value=0.11 Score=46.74 Aligned_cols=39 Identities=13% Similarity=-0.065 Sum_probs=32.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
+|++|+.|| ..|||+|....|.+.++.+++ ++.+.-+..
T Consensus 22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~ 60 (185)
T 3feu_A 22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMHI 60 (185)
T ss_dssp CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEEC
T ss_pred CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEec
Confidence 689999999 999999999999999999988 455555544
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=89.16 E-value=0.29 Score=39.22 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=18.8
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHH
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
..|+.|+ ++|||+|....+.|.++
T Consensus 22 ~~v~ly~-~~~Cp~C~~ak~~L~~~ 45 (103)
T 3nzn_A 22 GKVIMYG-LSTCVWCKKTKKLLTDL 45 (103)
T ss_dssp SCEEEEE-CSSCHHHHHHHHHHHHH
T ss_pred CeEEEEc-CCCCchHHHHHHHHHHc
Confidence 3466788 99999999988777654
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=0.93 Score=33.94 Aligned_cols=21 Identities=14% Similarity=0.138 Sum_probs=16.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSD 409 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~ 409 (547)
|+.|+ .+|||.|....+.|.+
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~ 23 (82)
T 1fov_A 3 VEIYT-KETCPYCHRAKALLSS 23 (82)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHH
T ss_pred EEEEE-CCCChhHHHHHHHHHH
Confidence 56677 9999999987766654
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.71 Score=35.53 Aligned_cols=32 Identities=3% Similarity=0.097 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
++.|+ ++|||+|....+.|.+. ++.+..+..+
T Consensus 8 v~~y~-~~~C~~C~~~~~~L~~~-------~i~~~~vdv~ 39 (89)
T 2klx_A 8 IILYT-RPNCPYCKRARDLLDKK-------GVKYTDIDAS 39 (89)
T ss_dssp EEEES-CSCCTTTHHHHHHHHHH-------TCCEEEECSC
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCCcEEEECC
Confidence 56677 99999999877666542 4555555554
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.59 E-value=1.6 Score=40.77 Aligned_cols=57 Identities=11% Similarity=0.239 Sum_probs=40.9
Q ss_pred CcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 447 DMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 447 ~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
.+.++...+.+.++++.|||. ..|+.++++++|++...... . ..-+.+-..|+.+.-
T Consensus 184 ~i~v~~~~~~~~~l~~~f~v~------~~Pslvl~~~~g~~~~~~~~-~---~~r~~~~~~l~~~~~ 240 (244)
T 3q6o_A 184 GVAVRRVLNTEANVVRKFGVT------DFPSCYLLFRNGSVSRVPVL-M---ESRSFYTAYLQRLSG 240 (244)
T ss_dssp TEEEEEEETTCHHHHHHHTCC------CSSEEEEEETTSCEEECCCS-S---SSHHHHHHHHHTC--
T ss_pred ceEEEEEeCchHHHHHHcCCC------CCCeEEEEeCCCCeEeeccc-c---ccHHHHHHHHHhCCC
Confidence 667787778889999999998 48999999999999977721 1 123444455665553
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.47 E-value=0.85 Score=36.48 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=15.6
Q ss_pred EEEEEeC-----CCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPL-----DFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~-----~~cp~C~~~~~~l~~~ 410 (547)
|+.|+ . +|||+|....+.|.++
T Consensus 19 vvvf~-~g~~~~~~C~~C~~~~~~L~~~ 45 (105)
T 2yan_A 19 VMLFM-KGNKQEAKCGFSKQILEILNST 45 (105)
T ss_dssp EEEEE-SBCSSSBCTTHHHHHHHHHHHH
T ss_pred EEEEE-ecCCCCCCCccHHHHHHHHHHC
Confidence 33466 6 9999999877766543
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=87.57 E-value=1.1 Score=44.47 Aligned_cols=62 Identities=16% Similarity=0.315 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
.++++.+++.++++-.+...+.. ..++.+.++|+++||. +.|..+++.+.+.+ +..+.+++.
T Consensus 221 ~~~diAasfq~~l~~~l~~~~~~-a~~~~g~~~vvlsGGV-a~N~~L~~~L~~~l~~~g~~v~~p~~ 285 (334)
T 3eno_A 221 AIEDISYSIQETAFAMLVEVLER-ALYVSGKDEILMAGGV-ALNRRLRDMVTNMAREAGIRSYLTDR 285 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCSEEEEESSG-GGCHHHHHHHHHHHHHHTSEEECCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCeEEEcCCH-HHHHHHHHHHHHHHHHcCCEEEecCC
Confidence 68899999999999888887775 4566788999999996 99999999999887 677777654
|
| >1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A* | Back alignment and structure |
|---|
Probab=87.51 E-value=0.37 Score=54.60 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=37.9
Q ss_pred ceEEEEEeCCceeEEEEEecCCC----eeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTR----EELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~----~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
-.|||||+|+|++|++++|.+|+ +.+...+.+++. .....+.+++++.+..+|..+
T Consensus 78 G~~laiDlGGTnirv~lv~~~G~~~~~i~~~~~~~~ip~----------~~~~~~~~~lf~~Ia~~i~~~ 137 (917)
T 1cza_N 78 GDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPE----------NIVHGSGSQLFDHVAECLGDF 137 (917)
T ss_dssp EEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECCCH----------HHHSSBHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCeEEEEEEEecCCCcceEEEEEEEEECCc----------ccccCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999875 212333333311 012346788888888887664
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=87.35 E-value=0.46 Score=48.71 Aligned_cols=62 Identities=5% Similarity=0.034 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhh------hcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLH------RSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~------~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
...+++++.+|-+.-.+++.++...+. ..-+..|+++||+ ++-+.+.+++++.++.|+.+..
T Consensus 293 ~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~-s~lpgl~e~~~~~~g~~vri~~ 360 (419)
T 4a2a_A 293 KLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGG-AKIPRINELATEVFKSPVRTGC 360 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGG-GGSTTHHHHHHHHHTSCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECch-hchhhHHHHHHHHHCCCeEEEe
Confidence 466888899999999998888742221 1125789999998 9999999999999999998765
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.76 Score=46.15 Aligned_cols=59 Identities=7% Similarity=0.067 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhh-h---cCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEe
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLH-R---SGINRIIGIGSCLTRNHILQHYIERIYGLQLIVE 345 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~-~---~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~ 345 (547)
...++++..++.++-.+++.++. +. + ..++.|+++||+ ++.+.+.+.+++.++.|+...
T Consensus 275 ~~~~~i~~~~~~i~~~i~~~l~~--~~~~~~~~~~~~IvL~GG~-s~~p~l~~~l~~~l~~~v~~~ 337 (377)
T 2ych_A 275 RIYDAIRPVLVELTQELRRSLEF--FRIQLEEASPEVGYLLGGG-SKLRGLASLLTDTLGVNLEPV 337 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--HHHHC---CCSEEEEESGG-GGSTTHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhccCCCCcCEEEEECcc-ccchhHHHHHHHHhCCCeEec
Confidence 46778889999999888888873 32 2 237899999998 999999999999999999886
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=1.1 Score=44.35 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
.++++.+++.++++-.+....+. ..++.+.++|+++||. +.|..+++.+.+.+ +..+.+++.
T Consensus 216 ~~~diAa~fq~~l~~~l~~~~~~-~~~~~~~~~vvlsGGV-a~N~~l~~~l~~~l~~~g~~v~~p~~ 280 (330)
T 2ivn_A 216 RVEDLAYSFQETAFAALVEVTER-AVAHTEKDEVVLVGGV-AANNRLREMLRIMTEDRGIKFFVPPY 280 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCSEEEEESGG-GGCHHHHHHHHHHHHHHTCEEECCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEEccH-HHHHHHHHHHHHHHHHcCCEEEecCC
Confidence 68899999999999888888775 3555778999999996 99999999999877 667766654
|
| >3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X* | Back alignment and structure |
|---|
Probab=86.66 E-value=0.9 Score=47.21 Aligned_cols=57 Identities=16% Similarity=0.395 Sum_probs=36.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.||+||+|+|++|+++++.+|+.-.......+++ | . .......+++++-+..+|..+
T Consensus 81 ~~LalDlGGTn~Rv~~V~l~g~~~~~~~~~~~~I--p-----~-~~~~~~~~~lfd~Ia~~i~~f 137 (485)
T 3o8m_A 81 DFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRL--P-----D-HLRTGTSEQLWSFIAKCLKEF 137 (485)
T ss_dssp EEEEEEESSSEEEEEEEEEESSSCEEEEEEEEEC--C-----T-TGGGSBHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCeEEEEEEEECCCCceEEEEEEEec--C-----c-hhccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999998876201111222321 1 1 112334678888888887654
|
| >3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.45 E-value=0.47 Score=46.50 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=26.8
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
+.++|+||-||||.|+-++|.+|++ +++.+.+.
T Consensus 6 ~~~~IavDWGTSnlRa~l~~~~g~v-l~~~~~~~ 38 (330)
T 3t69_A 6 AGYYAAVDWGTSSFRLWIIGEDGAV-LAERRSAE 38 (330)
T ss_dssp --CEEEEEECSSCEEEEEECTTSCE-EEEEEESC
T ss_pred CCCEEEEEecchheehheecCCCCc-hhhhcCCc
Confidence 3588999999999999999999988 77665443
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=85.95 E-value=1.3 Score=47.61 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh-hhhhhhc-----cC
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA-MRDASYA-----LE 358 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~-~~~a~~~-----~g 358 (547)
.+++++.+++.+...+++.++...+....++.|+++||+ ++.+.+.+++.+.++.++.....+. ..+.+++ +.
T Consensus 305 ~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~-sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~ 383 (605)
T 4b9q_A 305 LESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQ-TRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (605)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGG-GGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCc-cCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhc
Confidence 567788888888888877766311111237899999997 9999999999999999987755543 2332222 11
Q ss_pred CCCCCeeeccccCCceeeEeccCCCC
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKG 384 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~g 384 (547)
....++.+.| ..- .++.+....|
T Consensus 384 ~~~~~~~l~d-v~p--~slgie~~~g 406 (605)
T 4b9q_A 384 GDVKDVLLLD-VTP--LSLGIETMGG 406 (605)
T ss_dssp TSSCSEEEEC-BCS--SCEEEEETTT
T ss_pred CCCCceEEEe-eee--eEEEEEEcCC
Confidence 2245676666 333 2444444334
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=1.5 Score=44.89 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=41.8
Q ss_pred CceEEEEEeCCceeEEEEEecC--CCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN--TREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPK 71 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~--g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~ 71 (547)
.++++|||||||++|+++...+ |..+++....+..- -....-.|.+...+++++++..+..
T Consensus 7 ~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~g--------v~~G~I~di~~~~~~I~~av~~ae~ 69 (419)
T 4a2a_A 7 TVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG--------LDEGEIKDAIAFKESVNTLLKELEE 69 (419)
T ss_dssp CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCS--------EETTEESBHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCC--------eeCCEEEcHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999853 32336665544211 1123467999999999999887533
|
| >3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A | Back alignment and structure |
|---|
Probab=83.72 E-value=2 Score=46.33 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh-CCceEEe
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY-GLQLIVE 345 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l-~~~v~~~ 345 (547)
+++++.+++.++++-.+...... ..++.|+++|+++||. +.|+.+++.+.+.+ +.++...
T Consensus 571 ~~~dIAasFh~ala~~L~~~~~r-a~~~~g~~~VvLsGGV-~~N~~Lre~L~~~l~g~~v~~p 631 (657)
T 3ttc_A 571 PVNQRAWAFHDALAQGFAALMRE-QATMRGITTLVFSGGV-IHNRLLRARLAHYLADFTLLFP 631 (657)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCCEEEEESGG-GGCHHHHHHHHHHTTTSEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEECcH-HHHHHHHHHHHHHhCCCEEEec
Confidence 78999999999999999888775 4566789999999996 99999999999988 6666554
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=82.85 E-value=1.5 Score=44.42 Aligned_cols=64 Identities=19% Similarity=0.353 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh-CCceEEecchh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY-GLQLIVEQDQA 349 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l-~~~v~~~~~~~ 349 (547)
.+++++.+++.+.-.+++.++...+....++.|+++||+ ++.+.+.+.+.+.+ +.++.....+.
T Consensus 323 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~l~~~l~~~~~~~~v~~~~~p~ 387 (404)
T 3i33_A 323 FEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGS-TRIPKIQKLLQDFFNGKELNKSINPD 387 (404)
T ss_dssp HHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGG-GGCHHHHHHHHHHTTTCCCBCSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCc-cccHHHHHHHHHHcCCCCCCCCcCHH
Confidence 456667777777777777665311111227899999997 99999999999999 78877765554
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=82.58 E-value=0.65 Score=49.49 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC-CceEEecch
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG-LQLIVEQDQ 348 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~-~~v~~~~~~ 348 (547)
.+++...+++.+.-.+++.++...+....++.|+++||+ ++.+.+.+.+.+.++ .++.....+
T Consensus 302 ~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~-srip~v~~~l~~~f~~~~v~~~~np 365 (554)
T 1yuw_A 302 FEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGS-TRIPKIQKLLQDFFNGKELNKSINP 365 (554)
T ss_dssp HHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGG-GGCHHHHHHHHHHTTTCCCBCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCc-ccChHHHHHHHHHcCCCccccCCCc
Confidence 345666666666666666554211111127899999997 999999999999996 776655444
|
| >3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A | Back alignment and structure |
|---|
Probab=82.39 E-value=0.59 Score=42.16 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=33.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~ 426 (547)
.+|++|+.|| ..+||+|....+.+ .++.+++.+ +++++-+..
T Consensus 20 ~~~~~vvef~-d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~~ 64 (191)
T 3l9s_A 20 AGEPQVLEFF-SFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYHV 64 (191)
T ss_dssp CSSSCEEEEE-CTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEEC
T ss_pred CCCCeEEEEE-CCCChhHHHhChhccchHHHHHhCCC-CcEEEEEec
Confidence 4689999999 99999999999987 578877764 466666654
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=82.14 E-value=2 Score=43.14 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA 349 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~ 349 (547)
.+++++..++.+.-.+++.++...+....++.|+++||+ ++.+.+.+.+.+.++.++.....+.
T Consensus 305 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~-s~~p~l~~~l~~~~~~~v~~~~~p~ 368 (383)
T 1dkg_D 305 LESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQ-TRMPMVQKKVAEFFGKEPRKDVNPD 368 (383)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGG-GGSHHHHHHHHHHHSSCCBCSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCc-cccHHHHHHHHHHhCCCCCCCcChH
Confidence 345566677777666666555211111226899999997 9999999999999998877665554
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=81.46 E-value=1.1 Score=35.66 Aligned_cols=24 Identities=4% Similarity=0.116 Sum_probs=18.8
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHH
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
..|+.|+ ++|||+|......|.++
T Consensus 16 ~~v~vy~-~~~Cp~C~~ak~~L~~~ 39 (99)
T 3qmx_A 16 AKIEIYT-WSTCPFCMRALALLKRK 39 (99)
T ss_dssp CCEEEEE-CTTCHHHHHHHHHHHHH
T ss_pred CCEEEEE-cCCChhHHHHHHHHHHC
Confidence 3467788 99999999988777653
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=80.14 E-value=2.8 Score=42.51 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEE
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
.+++++.+++.+.-.+++.++...+....++.|+++||+ ++.+.+.+++.+.++.++.+
T Consensus 316 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~-s~~p~v~~~l~~~f~~~~~v 374 (409)
T 4gni_A 316 YETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGT-SNTPRIAANFRYIFPESTRI 374 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGG-GGCHHHHHHHHHHSCTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCc-cccHHHHHHHHHHcCCcccc
Confidence 456667777777777766665211111126899999997 99999999999999988544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 547 | ||||
| d1uula_ | 194 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 4e-72 | |
| d1qmva_ | 197 | c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox | 2e-67 | |
| d1n8ja_ | 186 | c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC | 3e-54 | |
| d2h01a1 | 170 | c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio | 2e-51 | |
| d1zyea1 | 158 | c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) | 5e-50 | |
| d1xcca_ | 219 | c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe | 7e-49 | |
| d1prxa_ | 220 | c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa | 8e-49 | |
| d1e2ya_ | 167 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 4e-48 | |
| d1zofa1 | 170 | c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He | 1e-46 | |
| d2zcta1 | 237 | c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni | 3e-46 | |
| d1we0a1 | 166 | c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase | 2e-43 | |
| d2bmxa1 | 169 | c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase | 5e-27 | |
| d1q98a_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i | 7e-17 | |
| d1qxha_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia c | 5e-15 | |
| d2cx4a1 | 160 | c.47.1.10 (A:4-163) Bacterioferritin comigratory p | 1e-14 | |
| d1xvwa1 | 153 | c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c | 6e-14 | |
| d1hd2a_ | 161 | c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien | 8e-14 | |
| d1nm3a2 | 163 | c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybr | 1e-13 | |
| d2a4va1 | 156 | c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's y | 2e-11 | |
| d1tp9a1 | 162 | c.47.1.10 (A:1-162) Plant peroxiredoxin {Western b | 1e-08 | |
| d2p3ra1 | 252 | c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co | 2e-08 | |
| d2p3ra1 | 252 | c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co | 3e-06 | |
| d1r59o1 | 252 | c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c | 4e-08 | |
| d1r59o1 | 252 | c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c | 6e-06 | |
| d2b7ka1 | 169 | c.47.1.10 (A:111-279) Thioredoxin-like protein Sco | 2e-06 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 2e-06 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 1e-05 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 2e-04 | |
| d1xiya1 | 179 | c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria p | 4e-04 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 0.001 | |
| d1woqa1 | 129 | c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-g | 0.002 | |
| d1huxa_ | 259 | c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase comp | 0.002 | |
| d1wp0a1 | 160 | c.47.1.10 (A:138-297) Thioredoxin-like protein Sco | 0.004 |
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Score = 226 bits (577), Expect = 4e-72
Identities = 125/186 (67%), Positives = 148/186 (79%), Gaps = 1/186 (0%)
Query: 359 KPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
PAP+F A++ NG FK + L+ YKG+++VLFFYP+DFTFVCPTEI FSDR +EF I
Sbjct: 7 HPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI 66
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+V+ACS DS +SHLAW +I R +GGLG M IPIL+DK+ I +SYGVL EE G+ YRG
Sbjct: 67 GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRG 126
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPS 537
LFIID KQNLRQIT+NDLPVGR VDE LRLV+AFQFV +HGEVCPA WKPG KTMK DP
Sbjct: 127 LFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGDKTMKPDPE 186
Query: 538 GSQEYF 543
S+EYF
Sbjct: 187 KSKEYF 192
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Score = 214 bits (546), Expect = 2e-67
Identities = 125/189 (66%), Positives = 150/189 (79%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
KPAP+F+ AVV+G FK +KLS YKG+YVVLFFYPLDFTFVCPTEIIAFS+RAE+F+K+
Sbjct: 9 KPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG 68
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
+V+ S DS F+HLAW N PR +GGLG + IP+L+D + ++ YGVL + GI YRGL
Sbjct: 69 CEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGL 128
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIID K LRQIT+NDLPVGRSVDE LRLVQAFQ+ EHGEVCPAGWKPGS T+K +
Sbjct: 129 FIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDD 188
Query: 539 SQEYFKTVN 547
S+EYF N
Sbjct: 189 SKEYFSKHN 197
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Score = 179 bits (455), Expect = 3e-54
Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 4/181 (2%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
F+ QA NG+F + +G++ V FFYP DFTFV PTE+ +D EE +K+
Sbjct: 5 TKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG 64
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
V + STD+HF+H AW + + + + ++ D + ++ R++ + E+ G+ R
Sbjct: 65 VDVYSVSTDTHFTHKAWHS---SSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRAT 121
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEH-GEVCPAGWKPGSKTMKADPS 537
F++D + ++ I + +GR + LR ++A Q+VA H GEVCPA WK G T+
Sbjct: 122 FVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSLD 181
Query: 538 G 538
Sbjct: 182 L 182
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Score = 171 bits (434), Expect = 2e-51
Identities = 77/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)
Query: 361 APEFEGQAVV-NGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
AP F+ +AV + F + LS + G+ YV+L+FYPLDFTFVCP+EIIA + FK+ N
Sbjct: 2 APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN 61
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
+++ CS DS F+HLAW P ++GG+G++ ++SD S SIARSY VL + R
Sbjct: 62 VELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF-NESVALRAF 120
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
+ID + ++ + +N+L +GRSVDE LRL+ A Q ++G+VCPA W+ G
Sbjct: 121 VLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKG 170
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Score = 167 bits (423), Expect = 5e-50
Identities = 100/157 (63%), Positives = 122/157 (77%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
+ AP F+G AVV+G+FK I L +KG+Y+VLFFYPLDFTFVCPTEIIAFSD+A EF +N
Sbjct: 1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN 60
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
+V+A S DSHFSHLAW N PR GGLG M I +LSD + I+R YGVL E G+ RGL
Sbjct: 61 CEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGL 120
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515
FIID ++ +++NDLPVGRSV+ETLRLV+AFQFV
Sbjct: 121 FIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE 157
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 166 bits (421), Expect = 7e-49
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
P F +A G + +L +Y + + +LF +P DFT VC TE+ E+F K+
Sbjct: 6 ATFPNFTAKAS--GIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL 63
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNE------ET 471
N ++I S +S SH W + G L IPI+ D+S +A +++E
Sbjct: 64 NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGL 123
Query: 472 GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKT 531
+ R LF I ++ ++ + GR+ E LR++++ Q P W G K
Sbjct: 124 PLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKC 183
Query: 532 MKA---DPSGSQEYFK 544
++FK
Sbjct: 184 CVIPTLQDDEISKHFK 199
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Score = 166 bits (421), Expect = 8e-49
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 17/198 (8%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP FE I+ + G + +LF +P DFT VC TE+ + A EF K
Sbjct: 5 DVAPNFEANT----TVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR 60
Query: 418 NTQVIACSTDSHFSHLAW---CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-- 472
N ++IA S DS HLAW N ++ + PI+ D++ +A G+L+
Sbjct: 61 NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDE 120
Query: 473 ----IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
+ R +F+ + L+ + GR+ DE LR+V + Q AE P WK G
Sbjct: 121 KGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDG 180
Query: 529 SKTMKA---DPSGSQEYF 543
M +++ F
Sbjct: 181 DSVMVLPTIPEEEAKKLF 198
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Score = 162 bits (411), Expect = 4e-48
Identities = 103/161 (63%), Positives = 132/161 (81%), Gaps = 1/161 (0%)
Query: 359 KPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
PAPEF+ A++ NG FK + LS YKG+YVVLFFYP+DFTFVCPTEII FSD A+ F +I
Sbjct: 7 HPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI 66
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
NT+VI+CS DS +SHL W ++ R KGGLG MAIP+L+DK+ +IAR+YGVL+E++G+ YRG
Sbjct: 67 NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRG 126
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHG 518
+FIID LRQI IND+P+GR+V+E +RLV+A QFV EHG
Sbjct: 127 VFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHG 167
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Score = 158 bits (401), Expect = 1e-46
Identities = 80/167 (47%), Positives = 106/167 (63%), Gaps = 4/167 (2%)
Query: 359 KPAPEFEGQAVVNGQF--KNIKLSQYKGQY-VVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
K AP+F+ AV+ ++ +LS+ G+ V+LFF+P DFTFVCPTEIIAF R ++F
Sbjct: 5 KLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFH 64
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
+ VI S DS H AW N P KGG+G ++ P+++D + SI+R Y VL EE I
Sbjct: 65 EKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEA-IAL 123
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCP 522
RG F+ID +R INDLP+GR+ DE LR+V A EHGEVCP
Sbjct: 124 RGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCP 170
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Score = 159 bits (404), Expect = 3e-46
Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 7/188 (3%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
+ PE E +G K +G++ VLF +P DFT VC TE ++F+ R E+F+++
Sbjct: 5 ERFPEMEVTTD-HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG 63
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI-PYRG 477
+I S DS FSH+ W G+ + PI++D ++AR G+L+ E+ RG
Sbjct: 64 VDLIGLSVDSVFSHIKWKEWIERHIGVR-IPFPIIADPQGTVARRLGLLHAESATHTVRG 122
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKP----GSKTMK 533
+FI+D + +R + + +GR VDE LR+V+A + PA W G +
Sbjct: 123 VFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIV 182
Query: 534 ADPSGSQE 541
P+ +
Sbjct: 183 PPPTTEDQ 190
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Score = 150 bits (378), Expect = 2e-43
Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Query: 359 KPAPEFEGQAVVNGQ-FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
F QA +G+ F + + KG++ ++ FYP DF+FVCPTE+ E KK+
Sbjct: 5 TEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL 64
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+V + STD+HF H AW N +G + ++ D S +I+R + VLNEETG+ RG
Sbjct: 65 GVEVYSVSTDTHFVHKAWHE---NSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRG 121
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEH-GEVC 521
FIID ++ I IN +GR + V+A Q+V E+ GEVC
Sbjct: 122 TFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVC 166
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 105 bits (261), Expect = 5e-27
Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 16/166 (9%)
Query: 359 KPAPEFEGQAVVNGQ------------FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
P ++ A++ G F I ++ G++ V+FF+P DFTFVCPTEI A
Sbjct: 7 DQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAA 66
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
FS +EF+ + Q++ S DS F+H W + L P+LSD ++++ GV
Sbjct: 67 FSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTL---PFPMLSDIKRELSQAAGV 123
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512
LN + G+ R FI+D ++ ++ VGR+VDE LR++ A Q
Sbjct: 124 LNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ 168
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Score = 76.0 bits (186), Expect = 7e-17
Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 13/139 (9%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
+ F +V ++ L+ + + VL +P T VC T + F+ +A + N
Sbjct: 20 EIVENFI---LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SN 74
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY--- 475
T V+ S D F+ +C + A + + ++ ++ GV + +
Sbjct: 75 TIVLCISADLPFAQARFCGAEGI-----ENAKTVSTFRNHALHSQLGVDIQTGPLAGLTS 129
Query: 476 RGLFIIDDKQNLRQITIND 494
R + ++D++ N+ + +
Sbjct: 130 RAVIVLDEQNNVLHSQLVE 148
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Score = 70.7 bits (172), Expect = 5e-15
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 14/153 (9%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
A F +V ++ L Q+ G+ VL +P T VC + F+ A E
Sbjct: 22 SKAQTFT---LVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTV 78
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY--- 475
I S D F+ +C + I + + ++ ++YGV + +
Sbjct: 79 VLCI--SADLPFAQSRFCGAEGL-----NNVITLSTFRNAEFLQAYGVAIADGPLKGLAA 131
Query: 476 RGLFIIDDKQNLRQITI-NDLPVGRSVDETLRL 507
R + +ID+ N+ + +++ + L +
Sbjct: 132 RAVVVIDENDNVIFSQLVDEITTEPDYEAALAV 164
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 69.3 bits (168), Expect = 1e-14
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
+ AP+F + N F+ + L + +G+ VL F+P F+ VC E+ F D+ + +K
Sbjct: 6 EKAPDFT---LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK 62
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE----TG 472
N +V+A S DS + + + +A +LSD + + + Y V +E+
Sbjct: 63 ANAEVLAISVDSPWCLKKFKDE-------NRLAFNLLSDYNREVIKLYNVYHEDLKGLKM 115
Query: 473 IPYRGLFIIDDKQNLRQITINDLPVGR-SVDETLRLVQAFQ 512
+ R +FI+ + + D P+ DE +R
Sbjct: 116 VAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 156
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 67.1 bits (162), Expect = 6e-14
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP+F + + + + L Y+G V+L F+PL FT +C E+ D EF+
Sbjct: 6 ATAPDFT---LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND 62
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD--KSMSIARSYGVLNEETGIPY 475
++ +A S +H W P+LSD +++++YGV NE+ GI
Sbjct: 63 DSAALAISVGPPPTHKIWATQSG-------FTFPLLSDFWPHGAVSQAYGVFNEQAGIAN 115
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510
RG F++D +R + R + A
Sbjct: 116 RGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA 150
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.3 bits (163), Expect = 8e-14
Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 14/160 (8%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRA-EEFKK 416
P E + L++ KG+ VLF P FT C + E K
Sbjct: 7 DAIPAVE--VFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA 64
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY- 475
QV+AC + + A+ + + + +L+D + + + +L +++ +
Sbjct: 65 KGVQVVACLSV----NDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIF 120
Query: 476 -----RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510
+ ++ ++ + + G + ++
Sbjct: 121 GNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 160
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Score = 66.8 bits (162), Expect = 1e-13
Identities = 14/150 (9%), Positives = 44/150 (29%), Gaps = 7/150 (4%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEE---F 414
K P+ + ++ ++ S+ + V++F P FT C + + +
Sbjct: 5 KKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK 64
Query: 415 KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIP 474
++ ++ D+ + + + + + G + G
Sbjct: 65 YGVDDILVVSVNDTFVMNAWKEDEKSEN---ISFIPDGNGEFTEGMGMLVGKEDLGFGKR 121
Query: 475 YRGLFIIDDKQNLRQITINDLPVGRSVDET 504
++ + ++ I G +
Sbjct: 122 SWRYSMLVKNGVVEKMFIEPNEPGDPFKVS 151
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.0 bits (144), Expect = 2e-11
Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQ--YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
P P+ ++N +I L + VV F YP T + F D +E K+
Sbjct: 9 DPIPDLS---LLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE 65
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
+ ++ +LSD G R
Sbjct: 66 YAAVFGLSADSVTSQKKFQSKQ--------NLPYHLLSDPKREFIGLLGAKKTPLSGSIR 117
Query: 477 GLFIIDD-KQNLRQITIN-DLPVGRSVDETLRLVQAFQ 512
FI D K +++ I+ ++ V + E L + + F+
Sbjct: 118 SHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK 155
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Score = 52.2 bits (124), Expect = 1e-08
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 10/131 (7%)
Query: 360 PAPEFEGQAVV-NGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
P+ + Q + + + G+ V+LF P FT C + + K
Sbjct: 9 VLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS 68
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY-- 475
+ + K + + L+D S + + G+ +
Sbjct: 69 KGVTEILCIS---VNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGT 125
Query: 476 ---RGLFIIDD 483
R ++DD
Sbjct: 126 RSRRFALLVDD 136
|
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Score = 52.5 bits (125), Expect = 4e-08
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 66 ILRLPKDHLKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQ 125
+L + ++ + E ++V L D Q V NA+ +N W+++
Sbjct: 141 LLDNIEGAQEKADNGELLFGT-IDSWLVWKLTDGQVHVTDYSNASRTMLYNIHKLEWDQE 199
Query: 126 ILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINVALGDLQCSVL 177
IL + P +LP+++ + + G TR + + PI GD Q ++
Sbjct: 200 ILD--LLNIPSSMLPEVKSNSEVYGH-TRSYHFYGSEVPIAGMAGDQQAALF 248
|
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Score = 45.5 bits (107), Expect = 6e-06
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC 65
V+ ID GTTS + + D N + ++ S K+ P G E N +I +++ +
Sbjct: 3 VMAIDQGTTSSRAIIFDRNGK-KIGSSQKEFPQYFP-----KSGWVEHNANEIWNSVQSV 56
Query: 66 ILRLPKDHLKQVKHIES 82
I + + + I
Sbjct: 57 IAGAFIESGIRPEAIAG 73
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 2e-06
Identities = 17/166 (10%), Positives = 46/166 (27%), Gaps = 20/166 (12%)
Query: 366 GQAVVNGQF-------KNIKLSQYKGQYVVLFFYP---LDFTFVCPTEIIAFSDRAEEFK 415
G+ + G F G++ +++F D ++ + +
Sbjct: 1 GKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY 60
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG--- 472
I Q + + D A + + + D+ + + Y V
Sbjct: 61 GITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVK 120
Query: 473 -------IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511
+++D + + VD+ + V+++
Sbjct: 121 PGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 45.3 bits (106), Expect = 2e-06
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 12/141 (8%)
Query: 357 LEKPAPEFEGQ-AVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
L +P PE G+ A +NG + + + ++ F+ + R +
Sbjct: 3 LRQPMPELTGEKAWLNG--EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD 60
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
++N + + D+ PI D ++ ++ +P
Sbjct: 61 QLNVVAVHMPRSEDDLDPGKIKETAAE---HDITQPIFVDSDHALTDAFEN----EYVPA 113
Query: 476 RGLFIIDDKQNLRQITINDLP 496
++ D LR
Sbjct: 114 --YYVFDKTGQLRHFQAGGSG 132
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 43.3 bits (101), Expect = 1e-05
Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 20/145 (13%)
Query: 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
L+K P + V+ G +I L G+ V +F +K
Sbjct: 3 LKKFFP-YSTN-VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK 60
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS-IARSYGVLNEETGIPY 475
N +V+ S D + + +A+P K M + + V IP
Sbjct: 61 KNFEVMLISWDESAE-----DFKDYYAKMPWLALPFEDRKGMEFLTTGFDV----KSIPT 111
Query: 476 RGLFIIDDKQ------NLRQITIND 494
L ++ R + + D
Sbjct: 112 --LVGVEADSGNIITTQARTMVVKD 134
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 18/137 (13%), Positives = 51/137 (37%), Gaps = 10/137 (7%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
P + + + K + ++ F+ + +C +E+ A++ K +
Sbjct: 2 PHTLS---TLKTADNRPASVYLKKDKPTLIKFWA-SWCPLCLSELGQTEKWAQDAKFSSA 57
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLF 479
+I ++ + + GL +P+++D +IA+S + + P
Sbjct: 58 NLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNI----SVYPS--WA 111
Query: 480 IIDDKQNLRQITINDLP 496
+I ++++I +
Sbjct: 112 LIGKDGDVQRIVKGSIN 128
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 39.3 bits (91), Expect = 4e-04
Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 372 GQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEF---KKINTQVIACSTD 427
F +I + + ++L P FT C T++I + ++ + + + +
Sbjct: 29 NDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNN 88
Query: 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY-----RGLFIID 482
+ +W I +SD + S S +L +++ R + I++
Sbjct: 89 DIYVLKSWFKSMDI------KKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE 142
Query: 483 D 483
+
Sbjct: 143 N 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 37.7 bits (86), Expect = 0.001
Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 13/129 (10%)
Query: 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
L+K P E + +++ G+ V +F + +
Sbjct: 2 LDKYLPGIE---KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES 58
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
N +V+ C+ D A + S+ +++ + V IP
Sbjct: 59 KNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFA----QSEAVQKLSKHFNV----ESIPT- 109
Query: 477 GLFIIDDKQ 485
L +D
Sbjct: 110 -LIGVDADS 117
|
| >d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK species: Arthrobacter sp. KM [TaxId: 184230]
Score = 36.4 bits (83), Expect = 0.002
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL 62
+ ++GIDIG T +K ++D + L + +P+ + P + + V +V+ L
Sbjct: 1 NAPLIGIDIGGTGIKGGIVDLKKGKLLGE-----RFRVPTPQPATPESVAEAVALVVAEL 55
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Score = 37.5 bits (86), Expect = 0.002
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSA 43
LGID+G+T+ K ++ +E ++
Sbjct: 4 TLGIDVGSTASKCIILKDG-KEIVAKSLVAVGTGTSGP 40
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.004
Identities = 17/150 (11%), Positives = 39/150 (26%), Gaps = 13/150 (8%)
Query: 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH-- 432
+ Y GQ+++++F VCP E+ +E I T
Sbjct: 11 ERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPER 70
Query: 433 --LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG---------LFII 481
+ + + ++ +AR+Y V +++I
Sbjct: 71 DTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLI 130
Query: 482 DDKQNLRQITINDLPVGRSVDETLRLVQAF 511
+ G ++ +
Sbjct: 131 GPDGEFLDYFGQNKRKGEIAASIATHMRPY 160
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 100.0 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 100.0 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 100.0 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 100.0 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 100.0 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 100.0 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.98 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.97 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.97 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.97 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.97 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1r59o1 | 252 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 99.96 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.95 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.93 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.93 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.92 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 99.91 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.9 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.9 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.9 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.89 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.89 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.89 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.88 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.85 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.85 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.84 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.83 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.8 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.78 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.78 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.77 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.77 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.74 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.73 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 99.71 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 99.7 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.64 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.57 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.55 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 99.51 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 98.94 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 98.9 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 98.88 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 98.87 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 98.86 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 98.85 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 98.83 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 98.81 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 98.8 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 98.79 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 98.79 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 98.78 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 98.77 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 98.76 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 98.75 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.75 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 98.71 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 98.68 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 98.65 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 98.59 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 98.59 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 98.57 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 98.51 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.44 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 98.43 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 98.31 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 98.3 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.27 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 98.09 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.07 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.05 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 97.72 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 97.6 | |
| d2aa4a1 | 119 | N-acetylmannosamine kinase NanK {Escherichia coli | 97.58 | |
| d2ap1a2 | 117 | Putative regulator protein YcfX {Salmonella typhim | 97.37 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 97.34 | |
| d2ch5a2 | 117 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 97.07 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.02 | |
| d2gupa1 | 114 | Hypothetical protein SP2142 {Streptococcus pneumon | 97.0 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 96.93 | |
| d2hoea3 | 128 | N-acetylglucosamine kinase {Thermotoga maritima [T | 96.47 | |
| d1xc3a1 | 118 | Putative fructokinase YhdR {Bacillus subtilis [Tax | 96.39 | |
| d1woqa1 | 129 | Inorganic polyphosphate/ATP-glucomannokinase PPGMK | 96.35 | |
| d1q18a1 | 110 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1z05a3 | 128 | Transcriptional regulator VC2007 {Vibrio cholerae | 96.2 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 96.05 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 95.8 | |
| d1z6ra2 | 129 | Mlc protein {Escherichia coli [TaxId: 562]} | 95.66 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 94.92 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 94.72 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 94.58 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 94.11 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 93.52 | |
| d1pn0a2 | 201 | Phenol hydroxylase, C-terminal domain {Soil-living | 91.37 | |
| d1ig8a1 | 207 | Hexokinase {Baker's yeast (Saccharomyces cerevisia | 89.98 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 87.75 | |
| d1bdga1 | 208 | Hexokinase {Blood fluke (Schistosoma mansoni) [Tax | 87.64 | |
| d1u6za2 | 124 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 87.39 | |
| d1v4sa1 | 205 | Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | 86.49 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 84.86 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 84.67 | |
| d1czan3 | 205 | Mammalian type I hexokinase {Human (Homo sapiens) | 82.89 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 82.83 | |
| d1nbwa2 | 239 | ATPase domain of the glycerol dehydratase reactiva | 81.39 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 80.83 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 80.69 | |
| d1czan1 | 207 | Mammalian type I hexokinase {Human (Homo sapiens) | 80.4 |
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-38 Score=294.83 Aligned_cols=192 Identities=65% Similarity=1.169 Sum_probs=181.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++.+.+++++.++|+|++||++||+|||+.|||+|+.++..|++++++|++.|++|++||.|++..+.+|
T Consensus 6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~ 85 (197)
T d1qmva_ 6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAW 85 (197)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred cCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhh
Confidence 49999999999875567778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+..+.....++++||+++|+++++++.||+..+..+...|++||||++|+|++.+.++.+.+++++|+|+.|+++|...
T Consensus 86 ~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~alq~~~ 165 (197)
T d1qmva_ 86 INTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTD 165 (197)
T ss_dssp HTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred hcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhhcccc
Confidence 99887766666899999999999999999999877788899999999999999999999999999999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccCC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
++|+.||++|+||+++|++..++.+++|+-+|
T Consensus 166 ~~g~~cp~~W~pG~~~~~p~~~~~~~~~~~~~ 197 (197)
T d1qmva_ 166 EHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN 197 (197)
T ss_dssp HHCCBBCTTCCTTSCCBCSSHHHHHHHHHHHC
T ss_pred ccCcCcCCCCCCCCccccCCHHHHHHhhhhcC
Confidence 99999999999999999999999999999877
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=5.7e-38 Score=289.36 Aligned_cols=188 Identities=66% Similarity=1.184 Sum_probs=174.8
Q ss_pred cCCCCCCeeeccc-cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 357 LEKPAPEFEGQAV-VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~-~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.|.++|+|+++.+ -++++++++|++|+||++||+|||++|||+|+.|++.|++++++|++.|++|++||.|+...+++|
T Consensus 5 ~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~ 84 (194)
T d1uula_ 5 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAW 84 (194)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhh
Confidence 7889999996541 134447999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.++++......+++||+++|++++++++||+..+..+...|++||||++|+|++.++++...+++++|+|+.|++||...
T Consensus 85 ~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~alQ~~~ 164 (194)
T d1uula_ 85 TSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVE 164 (194)
T ss_dssp HHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHhhhHh
Confidence 99887666666899999999999999999999887788899999999999999999999999999999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccc
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFK 544 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 544 (547)
++|+.||++|++|+++|++..++.+++|+
T Consensus 165 ~~~~~cp~~W~~g~~~~~p~~~~~~~~~~ 193 (194)
T d1uula_ 165 KHGEVCPANWKPGDKTMKPDPEKSKEYFG 193 (194)
T ss_dssp HHSCBBCTTCCTTSCCBCSSTGGGHHHHC
T ss_pred hcCCCcCCCCCCCCccccCCHHHHHHHhc
Confidence 99999999999999999999999999986
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.5e-37 Score=280.31 Aligned_cols=179 Identities=34% Similarity=0.662 Sum_probs=166.4
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
++|+++|+|+++++.+|+++++++++|+||++||+|||+.|||+|+.|++.|++.+++|++.|++|++||.|+.+.+++|
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f 81 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 81 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHH
Confidence 58999999999986789878899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+++... .+++||+++|++++++++||+..+..+...|++||||++|+|++.++++...+++++|+|+.|++||..+
T Consensus 82 ~~~~~~~---~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ~~~ 158 (186)
T d1n8ja_ 82 HSSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVA 158 (186)
T ss_dssp HHHCTTG---GGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred hcccccc---ccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHHHHH
Confidence 9876332 2589999999999999999999877777889999999999999999999999999999999999999999
Q ss_pred hc-CccccCCccCCCcccccCcc
Q psy224 516 EH-GEVCPAGWKPGSKTMKADPS 537 (547)
Q Consensus 516 ~~-~~~~~~~w~~~~~~~~~~~~ 537 (547)
++ |+.||+||+||+++|.+.+.
T Consensus 159 ~~~g~~~p~~W~~g~~~~~~~~~ 181 (186)
T d1n8ja_ 159 AHPGEVCPAKWKEGEATLAPSLD 181 (186)
T ss_dssp HSTTCBBCTTCCTTSCCBCCSST
T ss_pred hcCCeEeCCCCCCCCceeccCch
Confidence 97 89999999999999987654
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=9e-36 Score=277.85 Aligned_cols=188 Identities=27% Similarity=0.478 Sum_probs=167.9
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++++ .+++ ..++++++ +||++||+|||+.|||+|++|+..+++.+++|+++|++|++||+|+.+.+.+
T Consensus 3 ~iGd~aPdF~l~~-~~~~-g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~ 80 (219)
T d1xcca_ 3 HLGATFPNFTAKA-SGID-GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDK 80 (219)
T ss_dssp CTTCBCCCCEECB-TTCS-SCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred cCCCCCCCcEeec-cCCC-CcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhH
Confidence 4899999999987 5432 26999997 7899999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC------CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET------GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~------g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
|.++.+...+..+++||+++|++.++++.||+..++. +...|++||||++|+|++.++++...+++++|+|+.|
T Consensus 81 w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l 160 (219)
T d1xcca_ 81 WIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVL 160 (219)
T ss_dssp HHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred HhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHH
Confidence 9998765555558999999999999999999986542 2346899999999999999988999999999999999
Q ss_pred HhhHhhhhcCccccCCccCCCcccccC---ccchhccccc
Q psy224 509 QAFQFVAEHGEVCPAGWKPGSKTMKAD---PSGSQEYFKT 545 (547)
Q Consensus 509 ~~l~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~ 545 (547)
++||.+.++++.||+||++|+++|+.. .|+.+.+|+.
T Consensus 161 ~aLQ~~~~~~~~~PanW~~G~~~~~~p~~~~~~~~~~~~~ 200 (219)
T d1xcca_ 161 KSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISKHFKN 200 (219)
T ss_dssp HHHHHHHHSSEEBCTTCCTTSCEEECTTCCGGGHHHHCSS
T ss_pred HHHHHHHhCCCCcCCCCCCCCceeeCCCCChHHHHHHccC
Confidence 999999999999999999999999872 4777788864
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-35 Score=273.21 Aligned_cols=185 Identities=31% Similarity=0.505 Sum_probs=167.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++++ .+| +++|++++| |++||+|||+.|||+|+.|+..|++.+++|+++|+++++||+|+.+.+.+
T Consensus 2 ~VGd~APdF~l~~-~~G---~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~ 77 (220)
T d1prxa_ 2 LLGDVAPNFEANT-TVG---RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLA 77 (220)
T ss_dssp CTTCBCCCCEEEE-TTE---EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred CCCCCCCCcEeec-CCC---CEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhh
Confidence 4899999999999 888 599999976 89999999999999999999999999999999999999999999999998
Q ss_pred Hhhccc---cCCCCCCcceeeecCCChHHHHHhCCcccCC------CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy224 435 WCNIPR---NKGGLGDMAIPILSDKSMSIARSYGVLNEET------GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETL 505 (547)
Q Consensus 435 ~~~~~~---~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~------g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il 505 (547)
|.+... ......+++||+++|++++++++||+..++. +...|++||||++|+|++.++++...+|+++|+|
T Consensus 78 ~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiL 157 (220)
T d1prxa_ 78 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEIL 157 (220)
T ss_dssp HHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHH
T ss_pred hhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHH
Confidence 876532 2333447999999999999999999987653 2467999999999999999999999999999999
Q ss_pred HHHHhhHhhhhcCccccCCccCCCcccccC---ccchhcccc
Q psy224 506 RLVQAFQFVAEHGEVCPAGWKPGSKTMKAD---PSGSQEYFK 544 (547)
Q Consensus 506 ~~l~~l~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~ 544 (547)
+.|++||...++++.||+||++|+++|++. .++.+.+|+
T Consensus 158 r~l~alq~~~~~~~~~PanW~pGd~~~~~p~~~~~~~~~~~~ 199 (220)
T d1prxa_ 158 RVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFP 199 (220)
T ss_dssp HHHHHHHHHHHHCEEBCTTCCTTSCEEECTTSCHHHHHHHCT
T ss_pred HHHHHHhhhhcCCcCcCCCCCCCCceecCCCCCHHHHHHhcc
Confidence 999999999999999999999999999983 378888886
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=3.6e-34 Score=270.22 Aligned_cols=184 Identities=32% Similarity=0.555 Sum_probs=161.8
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY---KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~---~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
++|+++|+|++++ .+| .++++++ +||++||+|||++|||+|+.|++.|++++++|+++|++|++||+|+.+.+
T Consensus 2 lIGd~aPdF~l~t-~~G---~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh 77 (237)
T d2zcta1 2 LIGERFPEMEVTT-DHG---VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSH 77 (237)
T ss_dssp CTTSBCCCEEEEE-TTE---EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEEc-CCC---CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHH
Confidence 3899999999999 888 5777775 89999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC-CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET-GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~-g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
++|.+...... ..+++||+++|++.+++++||+...+. ....|++||||++|+|++.++++.+.+|+++|+|+.|++|
T Consensus 78 ~~w~~~~~~~~-~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL 156 (237)
T d2zcta1 78 IKWKEWIERHI-GVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 156 (237)
T ss_dssp HHHHHHHHHHH-CCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred HHHhhhhhhhc-ccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence 88887543221 128999999999999999999976443 3568999999999999999999999999999999999999
Q ss_pred HhhhhcCccccCCccC----CCcccccC---ccchhcccc
Q psy224 512 QFVAEHGEVCPAGWKP----GSKTMKAD---PSGSQEYFK 544 (547)
Q Consensus 512 ~~~~~~~~~~~~~w~~----~~~~~~~~---~~~~~~~~~ 544 (547)
|.+.++++.||+||++ |+++|++. .++.+..|+
T Consensus 157 Q~~~~~~~~~Pa~W~~~~~~g~~~~~~~~~~~~~~~~~~~ 196 (237)
T d2zcta1 157 KLGDSLKRAVPADWPNNEIIGEGLIVPPPTTEDQARARME 196 (237)
T ss_dssp HHHHHHTCBBCTTTTSBTTTBTCEECCCCCSHHHHHHHHH
T ss_pred hhhccCCcCCcCCCCCCCCCCCCEEeCCCCCHHHHHHhcc
Confidence 9999999999999998 99999984 377777765
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.98 E-value=4.9e-32 Score=245.18 Aligned_cols=168 Identities=46% Similarity=0.917 Sum_probs=153.0
Q ss_pred CCCCeeecccc-CCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhh
Q psy224 360 PAPEFEGQAVV-NGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCN 437 (547)
Q Consensus 360 ~~p~~~l~~~~-~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~ 437 (547)
++|+|+++++. ++++++++|+|++| |++||+|||+.|||+|+.|++.+++.+++|++.|++||+||.|+...+++|.+
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~ 80 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKK 80 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhh
Confidence 48999999621 23446899999998 79999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhhhc
Q psy224 438 IPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEH 517 (547)
Q Consensus 438 ~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~~ 517 (547)
+...+....+++||+++|+++++.+.||+..+. +...|++||||++|+|++.++++.+.+++++++|++|++||...++
T Consensus 81 ~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~-~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~lq~~~~~ 159 (170)
T d2h01a1 81 TPLSQGGIGNIKHTLISDISKSIARSYDVLFNE-SVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKY 159 (170)
T ss_dssp SCGGGTCCCSCSSEEEECTTSHHHHHTTCEETT-TEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCceeEcCccHHHHHhCCcccc-ccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhhhhc
Confidence 877776667899999999999999999997543 4667999999999999999998888888999999999999999999
Q ss_pred CccccCCccCC
Q psy224 518 GEVCPAGWKPG 528 (547)
Q Consensus 518 ~~~~~~~w~~~ 528 (547)
++.||++||+|
T Consensus 160 ~~~~~~~w~~g 170 (170)
T d2h01a1 160 GDVCPANWQKG 170 (170)
T ss_dssp CCCCCSSCCCC
T ss_pred CCccCCCCCCC
Confidence 99999999997
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.97 E-value=1.4e-31 Score=241.18 Aligned_cols=163 Identities=38% Similarity=0.679 Sum_probs=146.4
Q ss_pred ccCCCCCCeeeccccCC-ceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNG-QFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G-~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
++|+++|+|+++++.+| +++++++++++||++||+|||+.|||+|+.++++|++.+++|+++|++|++||.|+++.+++
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~ 81 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKA 81 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHH
Confidence 58999999999984333 24679999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.+++... ++++||+++|++++++++||+.....+.+.|++||||++|+|++.++++.+.+++++++|+.|+++|.+
T Consensus 82 ~~~~~~~~---~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal~~~ 158 (166)
T d1we0a1 82 WHENSPAV---GSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYV 158 (166)
T ss_dssp HHHSCHHH---HTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHHH
T ss_pred Hhhhhhhh---cccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhcchh
Confidence 98764211 278999999999999999999877777788999999999999999999988889999999999999998
Q ss_pred hhc-Cccc
Q psy224 515 AEH-GEVC 521 (547)
Q Consensus 515 ~~~-~~~~ 521 (547)
.++ |..|
T Consensus 159 ~~~~g~~c 166 (166)
T d1we0a1 159 RENPGEVC 166 (166)
T ss_dssp HTSTTCCC
T ss_pred hhcCCCCC
Confidence 887 7666
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.97 E-value=5.5e-31 Score=238.32 Aligned_cols=165 Identities=49% Similarity=0.868 Sum_probs=151.1
Q ss_pred ccCCCCCCeeeccccCCc---eeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhh
Q psy224 356 ALEKPAPEFEGQAVVNGQ---FKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~---~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~ 431 (547)
++|+++|||++++ .+|. .+.++|++++|| ++||+|||++|||+|+.|++.+++.+++|+++|++|++||.|+...
T Consensus 2 lVG~~APdF~l~~-~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~ 80 (170)
T d1zofa1 2 VVTKLAPDFKAPA-VLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQV 80 (170)
T ss_dssp CTTSBCCCCEEEE-ECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred CCCCcCCCcCccc-ccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhh
Confidence 4899999999998 7763 246999999985 8999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+|.++.+.+....+++||+++|++.++.++||+..+. +.+.|++||||++|+|++.++++.+.+++++++|+.|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~-~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL 159 (170)
T d1zofa1 81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159 (170)
T ss_dssp HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETT-TEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccccCcccccccccccHHHHHcCCCccc-cceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 999999877666666899999999999999999997643 5678999999999999999988888888999999999999
Q ss_pred HhhhhcCcccc
Q psy224 512 QFVAEHGEVCP 522 (547)
Q Consensus 512 ~~~~~~~~~~~ 522 (547)
|...++|+.||
T Consensus 160 q~~~~~~~~~p 170 (170)
T d1zofa1 160 LHFEEHGEVCP 170 (170)
T ss_dssp HHHHSSCCCCC
T ss_pred hhHHhcCCcCc
Confidence 99999999998
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=3.7e-30 Score=230.10 Aligned_cols=157 Identities=64% Similarity=1.113 Sum_probs=144.1
Q ss_pred CCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhc
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNI 438 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 438 (547)
.++|+|++++..+++++.++|+|++||++||+|||+.|||+|+.+++.+++++++|.+.|++|++||.|+.+.+++|.++
T Consensus 1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~ 80 (158)
T d1zyea1 1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT 80 (158)
T ss_dssp SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhh
Confidence 36899999874567778999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 439 PRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 439 ~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+.....++++||+++|++.++++.||+.....+.+.|++||||++|+|++.++++.+.+++++|+|+.|+++|+++
T Consensus 81 ~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkalq~~~ 157 (158)
T d1zyea1 81 PRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE 157 (158)
T ss_dssp CGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHTT
T ss_pred hHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhhh
Confidence 75555556899999999999999999999777777889999999999999999888888899999999999999754
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.97 E-value=2.4e-30 Score=234.08 Aligned_cols=159 Identities=63% Similarity=1.139 Sum_probs=146.7
Q ss_pred cCCCCCCeee----ccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 357 LEKPAPEFEG----QAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 357 ~g~~~p~~~l----~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
+|+++|+|++ +| .+| ++++|+|++||++||+|||++|||+|+.+++.|++++++|+++|++|++||.|+.+++
T Consensus 5 vG~~APdF~~~~~l~d-~~g--~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~ 81 (167)
T d1e2ya_ 5 LNHPAPEFDDMALMPN-GTF--KKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSH 81 (167)
T ss_dssp TTSBCCCCEEEEECSS-SCE--EEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCcccccccC-CCC--cEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhH
Confidence 8999999994 44 455 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+|.++.+.......++||+++|++.++++.|++.....+.+.|++||||++|+|++.++++.+.+++++|+|+.|+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~alq 161 (167)
T d1e2ya_ 82 LQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQ 161 (167)
T ss_dssp HHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence 99998877666666789999999999999999998777788889999999999999999888888889999999999999
Q ss_pred hhhhcC
Q psy224 513 FVAEHG 518 (547)
Q Consensus 513 ~~~~~~ 518 (547)
+..++|
T Consensus 162 ~~~~~g 167 (167)
T d1e2ya_ 162 FVEEHG 167 (167)
T ss_dssp HHHHCC
T ss_pred HHHhcC
Confidence 999876
|
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=99.96 E-value=1.9e-31 Score=258.14 Aligned_cols=168 Identities=22% Similarity=0.329 Sum_probs=139.6
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHH----------------------
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVST---------------------- 61 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~---------------------- 61 (547)
+|+||||+||||+|++|+|.+|++ +++.+.+++... +.+|+.||||++||++
T Consensus 1 nyvlgiDiGTtsvKa~l~D~~g~~-~~~~~~~~~~~~-----~~~g~~eqd~~~~~~~~~~~~~~~~~~~~~~~~~i~aI 74 (252)
T d1r59o1 1 NYVMAIDQGTTSSRAIIFDRNGKK-IGSSQKEFPQYF-----PKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGI 74 (252)
T ss_dssp CEEEEEBCCSSBCBCCEECSSSCB-CCCCCCBCCCCC-----CSTTCCBCCGGGSSSTTTTTSHHHHTTTTCCTTSEEEE
T ss_pred CEEEEEEecccceeeeEEeCCCCE-EEEEEEeCCcee-----cCCCcEEECHHHHHHHHHHHHHHHhhhhhhcccccceE
Confidence 589999999999999999999998 999999887644 5789999999999973
Q ss_pred -------------------HHHHHhhCCchhhhhhceeccC---------------------------------------
Q psy224 62 -------------------LHNCILRLPKDHLKQVKHIEST--------------------------------------- 83 (547)
Q Consensus 62 -------------------~~~~i~~~d~r~~~~~~~i~~~--------------------------------------- 83 (547)
++++|.|.|.|+.++++.+...
T Consensus 75 ~is~~~~~~v~~D~~~G~~l~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 154 (252)
T d1r59o1 75 GITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADN 154 (252)
T ss_dssp EECCCSSCCCCBCSSSCCCSSCCBCTTCCSSCHHHHHHHHHTCHHHHTTTTCCCSSTTSHHHHSHHHHSSSSSSSTTTTT
T ss_pred EEeCCcceEEEEECCCCCCcccccccCccchHHHHHHHHhcCCHHHHHHHHCCCCCccchHHHHHHHHHhhhHHHHHHHh
Confidence 3445788899876655543210
Q ss_pred ---CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCC
Q psy224 84 ---NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGIN 160 (547)
Q Consensus 84 ---~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~ 160 (547)
.+..+++||.|+|||....++|+|+|++|++||+++++|++++++.+ ++++++||+++++++++|+++++ +|++
T Consensus 155 ~~~~~~~~~~~l~~~Ltg~~~~~~d~s~as~t~~~d~~~~~w~~~l~~~~--gi~~~~LP~l~~~g~~~G~v~~~-~~l~ 231 (252)
T d1r59o1 155 GELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIHKLEWDQEILDLL--NIPSSMLPEVKSNSEVYGHTRSY-HFYG 231 (252)
T ss_dssp TCCBCCCHHHHHHHTSSSSCCCEECHHHHTTSSSBCTTTSSBCHHHHTTT--TCCSSSSCEECCSSSCCBCCSS------
T ss_pred ccccccchHHHHHHHhcCCCcccccccchhhccccCcccccchHHHHHHh--CCCHHHCCCcccCCCceEEeChh-hcCC
Confidence 03578999999999866678999999999999999999999999999 59999999999999999999865 6888
Q ss_pred CCCeEEecCCchhhhhhccc
Q psy224 161 KDTPINVALGDLQCSVLATL 180 (547)
Q Consensus 161 ~g~~V~~g~~D~~aa~~g~g 180 (547)
.|+||++|+||++||++|..
T Consensus 232 ~g~pV~~g~gD~~aa~iG~~ 251 (252)
T d1r59o1 232 SEVPIAGMAGDQQAALFGQM 251 (252)
T ss_dssp --SCEEEECCTTTSHHHHTT
T ss_pred CCCeEEEEhHHHHHHHHhCc
Confidence 99999999999999999964
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=3.7e-28 Score=220.01 Aligned_cols=153 Identities=37% Similarity=0.675 Sum_probs=136.3
Q ss_pred ccCCCCCCeeeccccCCc-------------eeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEE
Q psy224 356 ALEKPAPEFEGQAVVNGQ-------------FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVI 422 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~-------------~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi 422 (547)
.+|+++|+|++++ ..|. ++.+++++++||++||+|||++|||+|+.+++.+.+++++|+++|++++
T Consensus 4 ~vGd~aPdF~l~~-~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv 82 (169)
T d2bmxa1 4 TIGDQFPAYQLTA-LIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQIL 82 (169)
T ss_dssp CTTCBCCCCEEEE-ECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEE
T ss_pred CCCCCCCCCEEee-ccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCccee
Confidence 3999999999998 5552 2589999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHH
Q psy224 423 ACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVD 502 (547)
Q Consensus 423 ~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~ 502 (547)
+||.|+..+..+|.+.+.. ...++||+++|++++++++||+... .+...|++||||++|+|++.++++.+.+++++
T Consensus 83 ~is~d~~~~~~~~~~~~~~---~~~~~f~ll~D~~~~v~~~ygv~~~-~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~ 158 (169)
T d2bmxa1 83 GVSIDSEFAHFQWRAQHND---LKTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVGRNVD 158 (169)
T ss_dssp EEESSCHHHHHHHHHHCTT---GGGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECTTCCCCHH
T ss_pred eccccchhhhhhhcccccc---cccceEEEEeccHHHHHHHcCCCcc-CCccceeEEEEcCCCEEEEEEEcCCCCCCCHH
Confidence 9999999999998876522 2268999999999999999999743 35568999999999999999988888888999
Q ss_pred HHHHHHHhhHh
Q psy224 503 ETLRLVQAFQF 513 (547)
Q Consensus 503 ~il~~l~~l~~ 513 (547)
|+|+.|++||+
T Consensus 159 evl~~l~alq~ 169 (169)
T d2bmxa1 159 EVLRVLDALQS 169 (169)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999883
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=2.1e-26 Score=204.97 Aligned_cols=147 Identities=28% Similarity=0.496 Sum_probs=134.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++++ .+| +++++++++| |++||+|||++|||+|+.+++.|++++++++++|++|++||.|+++.+++
T Consensus 3 ~vG~~aPdF~l~d-~~G--~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~ 79 (153)
T d1xvwa1 3 NVGATAPDFTLRD-QNQ--QLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKI 79 (153)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHH
T ss_pred CCcCCCcCeEEEC-CCC--CEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHH
Confidence 3899999999999 888 6999999999 58888888899999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCC--ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDMAIPILSDK--SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~--~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+++ +++||+++|. +.++++.||+..+..+++.|++||||++|+|++.++.+....++..++.++|++|+
T Consensus 80 ~~~~~-------~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL~ 152 (153)
T d1xvwa1 80 WATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 152 (153)
T ss_dssp HHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred Hhhhh-------ccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhhc
Confidence 99987 8999999775 58899999998777777789999999999999999877777778889999998876
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.93 E-value=1.6e-26 Score=207.29 Aligned_cols=147 Identities=26% Similarity=0.450 Sum_probs=131.8
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~--~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
.+|+++|+|+|++ .+| +.++++++ +||++||+|||++|||+|+.+++.+++++++|++.++.+++|+.|+++.++
T Consensus 3 ~vG~~aPdF~L~~-~~G--~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~ 79 (160)
T d2cx4a1 3 ELGEKAPDFTLPN-QDF--EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLK 79 (160)
T ss_dssp CTTSBCCCCEECC-TTS--CCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHH
T ss_pred cCCCCCcCeEeEC-CCC--CEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhh
Confidence 3899999999999 889 69999998 799999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC----CcceeEEEEEcCCCcEEEEEecCCCCC-CCHHHHHHHH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET----GIPYRGLFIIDDKQNLRQITINDLPVG-RSVDETLRLV 508 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~----g~~~p~~~lid~~G~v~~~~~~~~~~~-~~~~~il~~l 508 (547)
+|.++. +++|++++|.+.+++++||+..... ....|++||||++|+|++.++++.+.. .+++++++++
T Consensus 80 ~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l 152 (160)
T d2cx4a1 80 KFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREA 152 (160)
T ss_dssp HHHHHH-------TCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHH
T ss_pred hhcccc-------eeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 999887 8999999999999999999975331 234689999999999999998765443 4799999999
Q ss_pred HhhH
Q psy224 509 QAFQ 512 (547)
Q Consensus 509 ~~l~ 512 (547)
+++.
T Consensus 153 ~~l~ 156 (160)
T d2cx4a1 153 NKIA 156 (160)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9876
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=1.5e-25 Score=205.46 Aligned_cols=155 Identities=18% Similarity=0.291 Sum_probs=124.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------C
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--------S 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--------~ 428 (547)
+|+++|+|+|+| .+| +.++|++++||++||+|| ++|||+|..++|.|.+++++|++ ++.+++|+.+ +
T Consensus 8 vG~~aPdF~l~d-~~G--~~~~Lsd~kGk~vvl~Fw-atwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~~~ 82 (187)
T d2cvba1 8 LESPLIDAELPD-PRG--GRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPEDA 82 (187)
T ss_dssp TTCBCCCCEEEC-TTS--CEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGGGS
T ss_pred CCCccCccEeec-CCC--CEEEHHHhCCCeEEEEEe-CCCCccchhhhhhhhhhhhhccc-cceeeeeeccccccccccc
Confidence 899999999999 999 699999999999999999 99999999999999999999986 5888888753 2
Q ss_pred hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC----CCHHHH
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG----RSVDET 504 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~----~~~~~i 504 (547)
.+..+++.+++ +++||++.|+++++++.|++. .+|++||||++|+|+++-.-+.... ....++
T Consensus 83 ~e~~~~~~~~~-------~~~~p~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L 149 (187)
T d2cvba1 83 PEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDL 149 (187)
T ss_dssp HHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHH
T ss_pred hHHHHHHHHHh-------CCcceeeechhhhhccccccc------ceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHH
Confidence 34556677665 999999999999999999998 5999999999999998762221111 112234
Q ss_pred HHHHHhhH------hhhhcCccccCCccCCC
Q psy224 505 LRLVQAFQ------FVAEHGEVCPAGWKPGS 529 (547)
Q Consensus 505 l~~l~~l~------~~~~~~~~~~~~w~~~~ 529 (547)
.++|+++- ......++|..+||+|.
T Consensus 150 ~~Ai~~ll~g~~~~~~~t~~~GC~ik~~~~~ 180 (187)
T d2cvba1 150 EAAIEALLRGEEPPLKEAPAIGCTIKWRPGN 180 (187)
T ss_dssp HHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred HHHHHHHHcCCCCCccccCCCCcceeECCCC
Confidence 44444433 33444688999999884
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=99.91 E-value=8.1e-25 Score=207.66 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=123.2
Q ss_pred CCCcEEEeccchhhhhhc--c-----cc------cccccchhH-----HHHHhHHHHHHHHhCCCCchhHHHHHHHhccC
Q psy224 183 HSDAIVNISTSAQIAFID--E-----MG------ASMNGGNCL-----ATFVCTLQNWFKEFGFNVPQNQIWAKLINASD 244 (547)
Q Consensus 183 ~~~~~is~GTs~~~~~~~--~-----~~------~~~~gg~~~-----~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~ 244 (547)
+|++.++.||++.+.+.+ + .+ ...++...+ ..++|.+++|+++.+......+..+
T Consensus 3 ~G~~k~T~GTg~~v~~~tg~~~~~~~~gll~t~~~~~~~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~------- 75 (235)
T d1r59o2 3 KGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSE------- 75 (235)
T ss_dssp TTCBCCEESSSEECEEECTTSCCCCSSSCEEEECCCSSSCCCEEEECCCSCSSHHHHHTTTTSCSSSSGGGGT-------
T ss_pred CCCeEeccccceEEEEecCCccccCCCCcEEEEEEEeCCccEEEeHHHHHHHHHHHHHHHhhhhcccchhhhc-------
Confidence 689999999999876543 1 11 111121111 1346778899999865433222111
Q ss_pred cccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh-cC--CcEEE
Q psy224 245 PINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHR-SG--INRII 318 (547)
Q Consensus 245 ~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g--~~~I~ 318 (547)
..+..++++++++|+|||.|+|+|+|++ |.|+||+..| ++.||+||++|||+|.+|++++ .+++ .| +++|+
T Consensus 76 ~~~~~~~~~~g~~flP~~~G~~~P~~~~~arg~~~Gl~~~~-~~~~l~rAvlEgiaf~~~~~~e--~~~~~~g~~~~~i~ 152 (235)
T d1r59o2 76 ELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGT-TKEDFVRATLQAVAYQSKDVID--TMKKDSGIDIPLLK 152 (235)
T ss_dssp TTTSSSSSCSSCEEECCTTCCCTTTCCSSCCCEEESCCTTC-CHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCSEEE
T ss_pred ccccccCCCCcceeeehhhhccccccCCCcceeEeecccCC-CHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCCcEEE
Confidence 2234567899999999999999999985 8999999997 9999999999999999999999 4654 45 78999
Q ss_pred eeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 319 GIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 319 ~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
++||+ +||+.|+|++||++++||.++...+..+.
T Consensus 153 ~~GG~-s~s~~~~Qi~Advlg~~v~~~~~~e~~al 186 (235)
T d1r59o2 153 VDGGA-AKNDLLMQFQADILDIDVQRAANLETTAL 186 (235)
T ss_dssp EEEST-TSCHHHHHHHHHHHSSEEEEESCCCTTTH
T ss_pred ecCcc-hhCHHHHhhhhhccceeeeeccccchHHH
Confidence 99997 99999999999999999999988765443
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=4.2e-24 Score=186.19 Aligned_cols=134 Identities=21% Similarity=0.395 Sum_probs=119.9
Q ss_pred CCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-ChhhHHHHh
Q psy224 358 EKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFSHLAWC 436 (547)
Q Consensus 358 g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~~~~~~ 436 (547)
|+++|+|++.+ .+| +++++++++||++||+|| ++|||+|..+++.+++++++|.++++.+++|+.+ +..+.++|.
T Consensus 2 G~~~P~f~l~~-~~G--~~~~l~~~~gk~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 77 (137)
T d1st9a_ 2 GSDAPNFVLED-TNG--KRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFM 77 (137)
T ss_dssp CEECCCCEEEC-TTS--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHH
T ss_pred cCcCCCeEEEC-CCc--CEEeHHHhCCCEEEEEEe-eccccceeecccccccccccccccccccccccccchhhhHHHHH
Confidence 78899999999 899 599999999999999999 9999999999999999999999999999999975 567888888
Q ss_pred hccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 437 NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+++ +++||++.|.+.++++.|++. .+|++||||++|+|++++.|..+. ..++++|+.|+
T Consensus 78 ~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~~~-~~~~~~l~~lk 136 (137)
T d1st9a_ 78 KSY-------GVNFPVVLDTDRQVLDAYDVS------PLPTTFLINPEGKVVKVVTGTMTE-SMIHDYMNLIK 136 (137)
T ss_dssp HHT-------TCCSCEEEETTSHHHHHTTCC------SSCEEEEECTTSEEEEEEESCCCH-HHHHHHHHHHC
T ss_pred HHc-------CCCccccccccchhhhhhhcc------ccceEEEECCCCEEEEEEECCCCH-HHHHHHHHhhC
Confidence 876 899999999999999999998 489999999999999999887753 24666666654
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=2.9e-24 Score=191.19 Aligned_cols=145 Identities=21% Similarity=0.296 Sum_probs=122.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~--~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
.+|+++|+|+|++ .+| +.++|+++ +++++|++|||++|||+|+.+++.|++.+++|++ +..+++||.|+++.++
T Consensus 6 ~vG~~aP~f~L~~-~~g--~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~~~~ 81 (156)
T d2a4va1 6 EIGDPIPDLSLLN-EDN--DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQK 81 (156)
T ss_dssp CTTCBCCSCEEEC-TTS--CEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHHHHH
T ss_pred CCCCCCCCeEEEC-CCC--CEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhhhHH
Confidence 3899999999999 899 69999999 5678999999999999999999999999999975 5779999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV---GRSVDETLRLVQA 510 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~~il~~l~~ 510 (547)
+|.+++ +++||+|+|++.+++++||+.....+...|++||+ +||++++.+++..+. ..+++++|+.|++
T Consensus 82 ~f~~~~-------~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~-~dg~i~~~~~~~~~~~~~~~~~~evl~~lk~ 153 (156)
T d2a4va1 82 KFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEK 153 (156)
T ss_dssp HHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccc-------CccceeccchHHHHHHHcCCCccccCCeeEEEEEE-ECCeEEEEEEEeCCCCCcchHHHHHHHHHHH
Confidence 999987 99999999999999999999764432223455555 799999999765432 2246788888887
Q ss_pred hH
Q psy224 511 FQ 512 (547)
Q Consensus 511 l~ 512 (547)
|+
T Consensus 154 l~ 155 (156)
T d2a4va1 154 FK 155 (156)
T ss_dssp TT
T ss_pred hc
Confidence 75
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=9.9e-24 Score=189.34 Aligned_cols=137 Identities=24% Similarity=0.365 Sum_probs=117.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
+|+++|+|+|.+ .+| +.++|++++||++||+|||+.|||+|..+++.|++++.+++ ++++++||.|+++.+++|.
T Consensus 20 vG~~APdF~L~~-~~g--~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~~~~~~~~ 94 (164)
T d1qxha_ 20 AGSKAQTFTLVA-KDL--SDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISADLPFAQSRFC 94 (164)
T ss_dssp TTSBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESSCHHHHTTCC
T ss_pred CCCCCCCeEEEC-CCC--CEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcCCHHHHHHHH
Confidence 999999999999 888 69999999999999999999999999999999999987764 8999999999999988888
Q ss_pred hccccCCCCCCcceeeec--CCChHHHHHhCCcccCC---CcceeEEEEEcCCCcEEEEEecC-CCCCCCHHHHH
Q psy224 437 NIPRNKGGLGDMAIPILS--DKSMSIARSYGVLNEET---GIPYRGLFIIDDKQNLRQITIND-LPVGRSVDETL 505 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~--D~~~~~~~~~~v~~~~~---g~~~p~~~lid~~G~v~~~~~~~-~~~~~~~~~il 505 (547)
+++ +++|+++. |++.++++.||+..... |...|++||||++|+|++.++.+ .....+.+++|
T Consensus 95 ~~~-------~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~pd~d~~l 162 (164)
T d1qxha_ 95 GAE-------GLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAAL 162 (164)
T ss_dssp SST-------TCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHT
T ss_pred HHh-------CCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcCCCCCCCCHHHhh
Confidence 765 77877764 56799999999876442 45579999999999999998655 44455777665
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.89 E-value=2.1e-23 Score=187.03 Aligned_cols=144 Identities=22% Similarity=0.364 Sum_probs=123.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+|.+ .+| +++++++++||++||+|||+.|||+|+.+++.+.+.+++|+ ++.+++||.|++..+.+|
T Consensus 17 ~vG~~aPdF~L~~-~~g--~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~~~~~~~ 91 (163)
T d1psqa_ 17 QVGDKALDFSLTT-TDL--SKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDLPFAQKRW 91 (163)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCeEEEC-CCC--CEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEeccHHHHHHH
Confidence 3899999999999 888 69999999999999999999999999999999998888875 799999999999999999
Q ss_pred hhccccCCCCCCccee-ee-cCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecC-CCCCCCHHHHHHHHHhh
Q psy224 436 CNIPRNKGGLGDMAIP-IL-SDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITIND-LPVGRSVDETLRLVQAF 511 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp-~l-~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~-~~~~~~~~~il~~l~~l 511 (547)
.++. +..++ ++ .|.+..+.+.||+.....+...|++||||++|+|++.++.+ ....+++++++++|++|
T Consensus 92 ~~~~-------~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~L 163 (163)
T d1psqa_ 92 CGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163 (163)
T ss_dssp HHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred HHHc-------CCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhcC
Confidence 8876 44443 33 34568899999998776666678999999999999998655 44455899999999875
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=5.9e-23 Score=184.69 Aligned_cols=143 Identities=22% Similarity=0.326 Sum_probs=116.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+|.+ .+| +.++|++++||++||+|||+.|||+|..+++.|++ ++++.|++|++||.|++.++++|
T Consensus 18 ~iG~~aP~F~L~~-~~g--~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~---~~~~~g~~vv~Is~d~~~~~~~~ 91 (166)
T d1xvqa_ 18 AVGSPAPAFTLTG-GDL--GVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDLPFAQKRF 91 (166)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHH---HHHHTTCEEEEEESSCHHHHTTC
T ss_pred CCcCCCCCeEEEC-CCC--CEEehHHhCCcEEEEEeeecccccccHHHHHHHhh---hcccccccccccccchHHHHHHH
Confidence 3999999999999 888 69999999999999999999999999999988764 56667999999999999998888
Q ss_pred hhccccCCCCCCcceeee-cCCChHHHHHhCCcccCC---CcceeEEEEEcCCCcEEEEEecC-CCCCCCHHHHHHHHHh
Q psy224 436 CNIPRNKGGLGDMAIPIL-SDKSMSIARSYGVLNEET---GIPYRGLFIIDDKQNLRQITIND-LPVGRSVDETLRLVQA 510 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l-~D~~~~~~~~~~v~~~~~---g~~~p~~~lid~~G~v~~~~~~~-~~~~~~~~~il~~l~~ 510 (547)
.+++ ++.|+.+ .|.+..+.+.|++..... +...|++||||++|+|++.++.+ .....++++++++|++
T Consensus 92 ~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~a 164 (166)
T d1xvqa_ 92 CGAE-------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA 164 (166)
T ss_dssp C-------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred HHHh-------CCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence 8765 7777764 466788999999886442 44568999999999999998654 4455689999999886
Q ss_pred h
Q psy224 511 F 511 (547)
Q Consensus 511 l 511 (547)
.
T Consensus 165 ~ 165 (166)
T d1xvqa_ 165 T 165 (166)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=3.6e-23 Score=179.40 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=115.1
Q ss_pred CCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-ChhhHHHHh
Q psy224 358 EKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFSHLAWC 436 (547)
Q Consensus 358 g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~~~~~~ 436 (547)
|+..++|++++ .+| +++++++++||++||+|| ++|||+|..++|.|+++++++ +++++++|+.+ +.....+|.
T Consensus 1 ~d~~~~f~~~~-~~G--~~~~l~~~~Gk~vll~F~-a~wC~~C~~~~p~l~~~~~~~--~~v~~v~v~~~~~~~~~~~~~ 74 (134)
T d1lu4a_ 1 ADERLQFTATT-LSG--APFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAAN--PAVTFVGIATRADVGAMQSFV 74 (134)
T ss_dssp CGGGGCCEEEB-TTS--CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCHHHHHHHH
T ss_pred CCCCCcceeEC-CCC--CEEcHHHhCCCEEEEEEe-ecccCCceecchhHHHHhhhh--ccccccccccccchhhhhhhh
Confidence 56788999999 899 699999999999999999 999999999999999999876 48999999975 567778888
Q ss_pred hccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 437 NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++ +++||++.|++.++++.|++. .+|+++|||++|++++.+. . ......+++.+.|++|
T Consensus 75 ~~~-------~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~v~~-~-~g~~~~~~l~~~l~~L 134 (134)
T d1lu4a_ 75 SKY-------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTSTFVNN-P-TAAMSQDELSGRVAAL 134 (134)
T ss_dssp HHH-------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEEEECC-S-SSCCCHHHHHHHHHHC
T ss_pred hhh-------ccccceeeCchHHHHHHcCCC------cCCEEEEEeCCCeEEEEec-c-CCCCCHHHHHHHHHcC
Confidence 877 899999999999999999998 5899999999999987652 2 2233578888888764
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.88 E-value=6.9e-23 Score=183.67 Aligned_cols=141 Identities=18% Similarity=0.325 Sum_probs=119.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+|.+ .+| +.++|++++||++||+|||+.|||+|+.|++.|++.+++|+ ++.+++||.|+++.+++|
T Consensus 17 ~vG~~APdF~L~d-~~g--~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d~~~~~~~~ 91 (164)
T d1q98a_ 17 QVGEIVENFILVG-NDL--ADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADLPFAQARF 91 (164)
T ss_dssp CTTCBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESSCHHHHTTC
T ss_pred CCCCCCCCcEEEC-CCC--CEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCCcHHHHHHH
Confidence 3999999999999 888 69999999999999999999999999999999999999995 799999999999999999
Q ss_pred hhccccCCCCCCcc-eeeecC-CChHHHHHhCCcccCC---CcceeEEEEEcCCCcEEEEEecCC-CCCCCHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMA-IPILSD-KSMSIARSYGVLNEET---GIPYRGLFIIDDKQNLRQITINDL-PVGRSVDETLRLV 508 (547)
Q Consensus 436 ~~~~~~~~~~~~~~-fp~l~D-~~~~~~~~~~v~~~~~---g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~~~il~~l 508 (547)
.+++ ++. ++.++| .+..+.+.|++..... |...|++||||++|+|++.++.+. ....+.+++++.|
T Consensus 92 ~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~~~~~epd~~~~l~~L 163 (164)
T d1q98a_ 92 CGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL 163 (164)
T ss_dssp TTTT-------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTT
T ss_pred HHHh-------CCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECCCCCCCCCHHHHHHhh
Confidence 8865 665 444444 4688999999876442 455799999999999999996553 3444788887754
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=8.4e-22 Score=172.70 Aligned_cols=133 Identities=14% Similarity=0.250 Sum_probs=112.0
Q ss_pred cCCCCCCeeecc-ccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC------h
Q psy224 357 LEKPAPEFEGQA-VVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------H 429 (547)
Q Consensus 357 ~g~~~p~~~l~~-~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------~ 429 (547)
+|+++|+|++.+ +.+| +.+++++++||++||+|| ++|||+|..++|.|++++++|++ ++++++|+.+. .
T Consensus 3 ~g~~aP~~~~~~~~~ng--~~~~~~~~~~k~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~ 78 (143)
T d2b5xa1 3 LRQPMPELTGEKAWLNG--EVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDP 78 (143)
T ss_dssp TTCBCCCCCCCSEEESC--CCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSH
T ss_pred CCCcCCCCcCCccCcCC--eEecHHHhCCCEEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccch
Confidence 799999999765 3578 578888899999999999 99999999999999999999986 68999998753 2
Q ss_pred hhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 430 FSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
...++|.+++ +++||++.|.+.++++.|++. .+|++||||++|+|++.+.|+.+ .+++.+.|+
T Consensus 79 ~~~~~~~~~~-------~~~~p~~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~~----~~~l~~~l~ 141 (143)
T d2b5xa1 79 GKIKETAAEH-------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGGSG----MKMLEKRVN 141 (143)
T ss_dssp HHHHHHHHHT-------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESCST----THHHHHHHH
T ss_pred hhhhhHHHhh-------ccCccccccCccchHHHcCCC------cCCEEEEECCCCEEEEEEECCCC----HHHHHHHHH
Confidence 3456677665 999999999999999999997 58999999999999999988654 345555554
Q ss_pred h
Q psy224 510 A 510 (547)
Q Consensus 510 ~ 510 (547)
+
T Consensus 142 ~ 142 (143)
T d2b5xa1 142 R 142 (143)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.85 E-value=2.8e-21 Score=175.56 Aligned_cols=141 Identities=13% Similarity=0.241 Sum_probs=118.7
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--ChhhHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--SHFSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--~~~~~~~ 434 (547)
.+.++|+|++++ .+| +.+++++++||++||+|| ++|||+|..+++.++++++++.+.++.|++|+.| +++..++
T Consensus 32 ~~~~~Pdf~l~d-~~G--~~v~L~~~kGK~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 107 (176)
T d1jfua_ 32 APLKLPDLAFED-ADG--KPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKT 107 (176)
T ss_dssp SCCBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHH
T ss_pred CCCcCCCeEEEC-CCc--CEEeHHHhCCCEEEEEec-cCcccchHHHHHhhhhccccccccccccccccccccchhhhhh
Confidence 455799999999 999 699999999999999999 9999999999999999999999999999999976 4567788
Q ss_pred HhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+++ +++++ ++.|.+.++.+.|+....- ..+|++||||++|+|++++.|+.+.. .+++++.|+++-
T Consensus 108 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~v--~~~P~~~lID~~G~I~~~~~G~~~~~--~~e~~~~l~al~ 175 (176)
T d1jfua_ 108 FLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRA--LGMPTSVLVDPQGCEIATIAGPAEWA--SEDALKLIRAAT 175 (176)
T ss_dssp HHHHT-------TCCTTCCEECTTCHHHHHHHTTTCC--SSSSEEEEECTTSBEEEEEESCCCTT--SHHHHHHHHHHH
T ss_pred hHhhh-------CCcceeeeecchhHHHHHHhhhccC--CCCCeEEEEcCCCEEEEEEECCCCCC--hHHHHHHHHHhc
Confidence 88876 67764 7888888888877654321 13699999999999999998876543 478888888763
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=9.5e-21 Score=163.95 Aligned_cols=126 Identities=19% Similarity=0.296 Sum_probs=106.0
Q ss_pred CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC-CChhhHHHHhhccc
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST-DSHFSHLAWCNIPR 440 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~-d~~~~~~~~~~~~~ 440 (547)
.+|++++ .+| +++++++++||++||+|| ++|||+|+.++|.|.+++++++ +..+++|+. |.....++|.+++
T Consensus 6 ~df~~~~-~~G--~~~~l~~~~Gk~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~~~~~~~~~~- 78 (134)
T d1zzoa1 6 LQFSAKT-LDG--HDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKY- 78 (134)
T ss_dssp GCCEEEB-TTS--CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHT-
T ss_pred cceeEEc-CCC--CEEeHHHhCCCEEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccchhHHHHHHhc-
Confidence 4799999 999 699999999999999999 9999999999999999999886 466777766 4667777888765
Q ss_pred cCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 441 NKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 441 ~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+. .||++.|++.++.+.|++. .+|++||||++|+|++.. +.. +.+++.+.|++|
T Consensus 79 ------~~~~~~~l~D~~~~~~~~~~v~------~~P~~~iiD~~G~i~~~~-g~~----~~~~l~~~i~~L 133 (134)
T d1zzoa1 79 ------PVKTFTQLADTDGSVWANFGVT------QQPAYAFVDPHGNVDVVR-GRM----SQDELTRRVTAL 133 (134)
T ss_dssp ------TCTTSEEEECTTCHHHHHTTCC------SSSEEEEECTTCCEEEEE-SCC----CHHHHHHHHHHH
T ss_pred ------CCcceeEEeeccchHHHhcCCC------ccCeEEEECCCCeEEEEE-CCC----CHHHHHHHHHhh
Confidence 44 5899999999999999988 589999999999998754 544 346666777665
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.83 E-value=2.1e-21 Score=170.19 Aligned_cols=129 Identities=14% Similarity=0.231 Sum_probs=108.1
Q ss_pred eeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCCh------hhHHHHhh
Q psy224 364 FEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSH------FSHLAWCN 437 (547)
Q Consensus 364 ~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~------~~~~~~~~ 437 (547)
.+|++ .+| +++++++++||++||+|| ++|||+|..++|.|++++++++..++.+++|+.+.. ....++..
T Consensus 6 ~~l~~-~~~--~~~~l~~~~gk~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 81 (143)
T d2fy6a1 6 STLKT-ADN--RPASVYLKKDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYA 81 (143)
T ss_dssp HTCEE-TTS--CBGGGGCCTTSCEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHT
T ss_pred ceeEC-CCC--CEeeHHHhCCCEEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhh
Confidence 45677 778 699999999999999999 999999999999999999999999999999997532 12223333
Q ss_pred ccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 438 IPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 438 ~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+. +...||++.|.++++++.|++. .+|+++|||++|+|++.+.|..+ .+++.+.|++++
T Consensus 82 ~~------~~~~~~~~~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~~----~~~~~~~l~~~~ 140 (143)
T d2fy6a1 82 GL------NYPKLPVVTDNGGTIAQSLNIS------VYPSWALIGKDGDVQRIVKGSIN----EAQALALIRDPN 140 (143)
T ss_dssp TS------CCTTSCEEECTTCHHHHHTTCC------SSSEEEEECTTSCEEEEEESCCC----HHHHHHHHHCTT
T ss_pred hc------CCcccccccccchHHHHHcCCC------ccCEEEEECCCCEEEEEEECCCC----HHHHHHHHHHHh
Confidence 22 2678999999999999999997 58999999999999999988774 567778887665
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.80 E-value=3.6e-20 Score=162.37 Aligned_cols=120 Identities=11% Similarity=0.192 Sum_probs=97.4
Q ss_pred CCCCeeeccccCCc------eeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhH
Q psy224 360 PAPEFEGQAVVNGQ------FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSH 432 (547)
Q Consensus 360 ~~p~~~l~~~~~G~------~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~ 432 (547)
++|+|++++ ..|. ...+++++++||++||+|| ++|||+|..++|.+++++++ .++++++|+.+. ..+.
T Consensus 2 paP~~~lp~-~~g~~~~~~~~~~~~~~~~kgK~vll~fw-a~wC~~C~~~~p~l~~l~~~---~~~~~~~i~~~~~~~~~ 76 (144)
T d1knga_ 2 PAPQTALPP-LEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYKDAADNA 76 (144)
T ss_dssp BCCCCCBCC-CTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEESCCHHHH
T ss_pred CCCCCCCCC-CCCccccCCcCCccCHHHhCCCEEEEEee-ccccccccccCchhhhhhhc---cCceeEEEEeeechHHH
Confidence 567777665 4431 2468899999999999999 99999999999999887654 478999998764 4566
Q ss_pred HHHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC
Q psy224 433 LAWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~ 497 (547)
+++.+++ +..|+ ++.|++.++++.|++. .+|+++|||++|+|++.+.|+.+.
T Consensus 77 ~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~~~ 129 (144)
T d1knga_ 77 RRFLGRY-------GNPFGRVGVDANGRASIEWGVY------GVPETFVVGREGTIVYKLVGPITP 129 (144)
T ss_dssp HHHHHHH-------CCCCSEEEEETTSHHHHHTTCC------SSCEEEEECTTSBEEEEEESCCCH
T ss_pred HHHHHHc-------CCccccccccccchhhhhcCcc------ccceEEEEcCCCeEEEEEeCCCCH
Confidence 6777765 55665 7889999999999988 589999999999999999887753
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.8e-19 Score=159.40 Aligned_cols=145 Identities=17% Similarity=0.287 Sum_probs=114.9
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHhhCCc-EEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEFKKINT-QVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~-~vi~is~d~~~~~ 432 (547)
.+|+++|+|+|.+..+| +.++++++ +||++||+|||+.|||+|+. +++.+.+.+++|.++|. .++++|.|++..+
T Consensus 4 kVGd~aP~f~l~~~~~~--~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~ 81 (161)
T d1hd2a_ 4 KVGDAIPAVEVFEGEPG--NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVT 81 (161)
T ss_dssp CTTCBCCCCEEECSSTT--CEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHH
T ss_pred CCCCcCCCeEEEecCCC--cEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhh
Confidence 38999999999752446 68999996 89999999999999999965 78889999999999987 5778999999998
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCc------ceeEEEEEcCCCcEEEEEecCCCCCCCH---HH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI------PYRGLFIIDDKQNLRQITINDLPVGRSV---DE 503 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~------~~p~~~lid~~G~v~~~~~~~~~~~~~~---~~ 503 (547)
.+|.++.. . ..+||+++|++++++++||+..++.+. ..+.+++|+++|+|++.++.+....+++ ++
T Consensus 82 ~~~~~~~~-~----~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~~~~s~a~~ 156 (161)
T d1hd2a_ 82 GEWGRAHK-A----EGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPN 156 (161)
T ss_dssp HHHHHHTT-C----TTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHH
T ss_pred hhhhhhcc-c----ccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeCCCCCCCcCcHHH
Confidence 88887652 1 568999999999999999998765421 1233444555999999998766555544 55
Q ss_pred HHHH
Q psy224 504 TLRL 507 (547)
Q Consensus 504 il~~ 507 (547)
+|+.
T Consensus 157 vL~~ 160 (161)
T d1hd2a_ 157 IISQ 160 (161)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.78 E-value=3.7e-19 Score=155.76 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=94.6
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeCCCh-hhHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACSTDSH-FSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~d~~-~~~~~ 434 (547)
+++.+|+++... .+| .++++++++||++||+|| ++||++|..++|.|++++++|. +.++++++|+.|.. +...+
T Consensus 4 ~~k~~P~~~~~~-~~~--~~v~l~~~~GK~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~ 79 (144)
T d1o73a_ 4 LAKYLPGATNLL-SKS--GEVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHD 79 (144)
T ss_dssp GGGTSCTTCCBB-CTT--SCBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHH
T ss_pred cccCCCCceeec-cCC--CEEeHHHhCCCEEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHH
Confidence 789999999887 666 489999999999999999 9999999999999999999995 56899999999853 44555
Q ss_pred HhhccccCCCCCCcceeeec-CCChHHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEE
Q psy224 435 WCNIPRNKGGLGDMAIPILS-DKSMSIARSYGVLNEETGIPYRGLFIIDDK-QNLRQIT 491 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~-D~~~~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~ 491 (547)
+.++.. ...+++.. +...++.+.|++. .+|++||||++ |+|+..+
T Consensus 80 ~~~~~~------~~~~~~~~~~~~~~l~~~y~v~------~~Pt~~lID~~~G~Ii~~~ 126 (144)
T d1o73a_ 80 YYGKMP------WLALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHTTCS------SEECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHhcc------ccceeeeccchHHHHHHHcCCC------cCCEEEEEECCCCEEEeec
Confidence 555431 22333211 1225688999998 58999999997 8998654
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.9e-19 Score=156.00 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=94.0
Q ss_pred eeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHHHhhccccCCCCCCcceee
Q psy224 375 KNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 375 ~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
+.++.+++ +||++||+|| |+||++|..++|.|++++ ++++.+++++.+. ......+.++.. ...+++
T Consensus 10 ~~~~~~~l~~Gk~vvl~Fw-atWC~pC~~e~p~l~~~~----~~~~~vi~i~~~~~~~~~~~~~~~~~------~~~~~~ 78 (136)
T d1z5ye1 10 QFYQADVLTQGKPVLLNVW-ATWCPTSRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAISWLKELG------NPYALS 78 (136)
T ss_dssp CEECHHHHHSSSCEEEEEE-CTTCHHHHHHHHHHHHHH----HTTCCEEEEEESCCHHHHHHHHHHHC------CCCSEE
T ss_pred cEecHHHHcCCCEEEEEEE-cCcCCCcCccccchhhhh----hhhhhhcccccccchhhhHHHHHHcC------Ccccee
Confidence 68999998 8999999999 999999999999998764 4589999999864 344555555441 334457
Q ss_pred ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 453 LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 453 l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.|.++.+.+.|++. .+|+++|||++|+|++++.|+.+...-.+.+.+.|++++
T Consensus 79 ~~d~~~~~~~~~~v~------~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl~ 132 (136)
T d1z5ye1 79 LFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS 132 (136)
T ss_dssp EEESSCHHHHHHTCC------SBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred ecccchhHHHhcccC------CcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 889999999999998 589999999999999999887754422233334455554
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=1.9e-18 Score=155.86 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=109.8
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhhC--CcEEEEEeCCC----h
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKKI--NTQVIACSTDS----H 429 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~----~ 429 (547)
++.++|+|+|.+ .+| +.+++++++||++||+|| .+||| .|+.+++.|.+++++|++. .+++++||.|+ +
T Consensus 7 ~~~~~p~F~l~d-~~G--~~vsl~d~~Gk~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp 82 (172)
T d1xzoa1 7 LNYEVEPFTFQN-QDG--KNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKP 82 (172)
T ss_dssp CCEECCCCEEEC-TTS--CEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred CCCcCCCeEEEc-CCC--CEEcHHHhCCCEEEEEEe-cccccccccccchhhhhhhhhhccccccccccccccccccchH
Confidence 556789999999 999 699999999999999999 89997 7999999999999999864 48999999875 4
Q ss_pred hhHHHHhhccccCCCCCCcceeeecCCChH-----HHHHhCCcccCC---Cc--ceeEEEEEcCCCcEEEEEecCCCCCC
Q psy224 430 FSHLAWCNIPRNKGGLGDMAIPILSDKSMS-----IARSYGVLNEET---GI--PYRGLFIIDDKQNLRQITINDLPVGR 499 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~-----~~~~~~v~~~~~---g~--~~p~~~lid~~G~v~~~~~~~~~~~~ 499 (547)
+.+++|.+.+ .....+|.++.+.+.+ ..+.|++..... +. -.+.+||||++|+|+..+.+.. ..
T Consensus 83 ~~l~~y~~~~----~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~--~~ 156 (172)
T d1xzoa1 83 KQLKKFAANY----PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVE--NT 156 (172)
T ss_dssp HHHHHHHTTS----CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSS--SC
T ss_pred HHHHHHHHHh----ccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCC--CC
Confidence 5566666644 2223456788876544 335566543211 00 1367999999999998885432 23
Q ss_pred CHHHHHHHHHhhH
Q psy224 500 SVDETLRLVQAFQ 512 (547)
Q Consensus 500 ~~~~il~~l~~l~ 512 (547)
..+++++.|++++
T Consensus 157 ~~~~l~~dik~~~ 169 (172)
T d1xzoa1 157 PYDDIISDVKSAS 169 (172)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH
Confidence 5789999998876
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.74 E-value=2.9e-18 Score=149.79 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=86.9
Q ss_pred cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCC-hhhHHHHhhccccCCCCCC
Q psy224 370 VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDS-HFSHLAWCNIPRNKGGLGD 447 (547)
Q Consensus 370 ~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~-~~~~~~~~~~~~~~~~~~~ 447 (547)
+++.+..+++++++||+++|+|| |+||++|..++|.|++++++|++ .+++|++|+.|. .++.+++.++. +
T Consensus 14 l~~~~~~v~ls~l~GK~vll~Fw-AtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~-------~ 85 (144)
T d1i5ga_ 14 LKGAAADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKM-------P 85 (144)
T ss_dssp EETTEEEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTC-------S
T ss_pred ccCCCCEeeHHHcCCCEEEEEEE-ecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhC-------C
Confidence 33444789999999999999999 99999999999999999999986 479999999985 44555666554 6
Q ss_pred cceeeecCCC--hHHHHHhCCcccCCCcceeEEEEEcCC-CcEEE
Q psy224 448 MAIPILSDKS--MSIARSYGVLNEETGIPYRGLFIIDDK-QNLRQ 489 (547)
Q Consensus 448 ~~fp~l~D~~--~~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~ 489 (547)
+.++.+.|.+ ..+.+.|++. .+|+++|||++ |+|+.
T Consensus 86 ~~~~~~~d~~~~~~l~~~y~v~------~iPt~~lid~~~G~vi~ 124 (144)
T d1i5ga_ 86 WLALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIIT 124 (144)
T ss_dssp SEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEE
T ss_pred CCceeeEChHHHHHHHHHCCCC------CcCEEEEEeCCCCEEEe
Confidence 6666665544 4588999998 58999999996 89974
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.73 E-value=3.2e-18 Score=149.69 Aligned_cols=119 Identities=14% Similarity=0.232 Sum_probs=96.6
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCCh-hhHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSH-FSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~-~~~~~ 434 (547)
+++.+|+|++.+ .+| +++++++++||++||+|| ++|||+|..+++.|.+++++|.+ .++++++|+.|.. .....
T Consensus 2 ~~k~~P~~~~~~-~~g--~~v~l~~l~GK~vll~Fw-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~ 77 (144)
T d1o8xa_ 2 LDKYLPGIEKLR-RGD--GEVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAG 77 (144)
T ss_dssp GGGTSTTCCEEE-ETT--EEEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHH
T ss_pred CCCCCCCcEeEc-CCC--CEEeHHHhCCCEEEEEec-cccccccccccchhHHhhhhcccccccccccccccccHHHHHH
Confidence 577899999998 788 699999999999999999 99999999999999999999965 4799999999853 33344
Q ss_pred HhhccccCCCCCCcceeeec-CCChHHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEE
Q psy224 435 WCNIPRNKGGLGDMAIPILS-DKSMSIARSYGVLNEETGIPYRGLFIIDDK-QNLRQIT 491 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~-D~~~~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~ 491 (547)
+..+. ....+++.. |...++.+.|++. .+|+++|||++ |+|+...
T Consensus 78 ~~~~~------~~~~~~~~~~d~~~~l~~~y~v~------~~Pt~~liD~~~G~Vi~~~ 124 (144)
T d1o8xa_ 78 YFAKM------PWLAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTTR 124 (144)
T ss_dssp HHTTC------SSEECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHhhc------cccceeeecccchhhHHHHcCCC------cCCEEEEEeCCCCEEEEEe
Confidence 44322 145555543 4557899999998 58999999998 8997443
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=99.71 E-value=1.9e-17 Score=147.54 Aligned_cols=147 Identities=19% Similarity=0.291 Sum_probs=117.0
Q ss_pred hccCCCCCCeeeccc-cCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHhhCCc-EEEEEeCCChh
Q psy224 355 YALEKPAPEFEGQAV-VNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTE-IIAFSDRAEEFKKINT-QVIACSTDSHF 430 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~-~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~-~vi~is~d~~~ 430 (547)
..+|+++|+|+|..+ .++++++++++++ +||++||+|||+.++|.|+.+ .+...+..+++.++|. +|++||+|++.
T Consensus 4 l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~~~ 83 (162)
T d1tp9a1 4 IAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPF 83 (162)
T ss_dssp CCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHH
T ss_pred CCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccchh
Confidence 349999999999631 1344478999986 999999999999999999764 7777888888888774 79999999999
Q ss_pred hHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC-----cceeEEEEEcCCCcEEEEEecCCCC--CCCHHH
Q psy224 431 SHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-----IPYRGLFIIDDKQNLRQITINDLPV--GRSVDE 503 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g-----~~~p~~~lid~~G~v~~~~~~~~~~--~~~~~~ 503 (547)
.+.+|..+.. . ..++++++|++.+++++||+..+..+ .+.|.+|||| +|+|++.++.+... ..+.++
T Consensus 84 ~~~~~~~~~~-~----~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ve~~~~~~~s~ae~ 157 (162)
T d1tp9a1 84 VMKAWAKSYP-E----NKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEGGGEFTVSSAED 157 (162)
T ss_dssp HHHHHHHTCT-T----CSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECSSSCCSSCSHHH
T ss_pred hhhhhhhhcc-c----ccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEEECCCCCccCCHHH
Confidence 9999998752 1 46799999999999999998764432 3458999999 89999999754332 135777
Q ss_pred HHHH
Q psy224 504 TLRL 507 (547)
Q Consensus 504 il~~ 507 (547)
+|+.
T Consensus 158 vLk~ 161 (162)
T d1tp9a1 158 ILKD 161 (162)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 7764
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=99.70 E-value=4.2e-17 Score=145.26 Aligned_cols=147 Identities=17% Similarity=0.298 Sum_probs=113.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHH-HHhhCCc-EEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAE-EFKKINT-QVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~-~~~~~~~-~vi~is~d~~~~~ 432 (547)
+.|+++|+|+++...+++++.++++++ +||++||+|+|+.++|.|+.++..+...+. .+..+++ .+++++.+++...
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~ 81 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVM 81 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHH
Confidence 479999999999734454568999997 999999999999999999999877665543 3444443 5666666666666
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC-----CcceeEEEEEcCCCcEEEEEecCCCCCC-----CHH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET-----GIPYRGLFIIDDKQNLRQITINDLPVGR-----SVD 502 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~-----g~~~p~~~lid~~G~v~~~~~~~~~~~~-----~~~ 502 (547)
++|.++.. ..++++++|++.+++++||+..... ..+.|.+|||| +|+|++.++.+...++ +.+
T Consensus 82 ~a~~~~~~------~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~~~~~g~~~~~s~ae 154 (163)
T d1nm3a2 82 NAWKEDEK------SENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIEPNEPGDPFKVSDAD 154 (163)
T ss_dssp HHHHHHTT------CTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECCSCSSCCCSSSSHH
T ss_pred HHHhhhhc------cCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEecCCCCCCccccCHH
Confidence 66665431 6789999999999999999875432 14578999999 9999999987654443 578
Q ss_pred HHHHHHH
Q psy224 503 ETLRLVQ 509 (547)
Q Consensus 503 ~il~~l~ 509 (547)
++|+.|.
T Consensus 155 ~vL~~L~ 161 (163)
T d1nm3a2 155 TMLKYLA 161 (163)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 8888775
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.6e-15 Score=136.73 Aligned_cols=131 Identities=7% Similarity=0.035 Sum_probs=93.7
Q ss_pred CCCeeeccccC-CceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCCh--------hh
Q psy224 361 APEFEGQAVVN-GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSH--------FS 431 (547)
Q Consensus 361 ~p~~~l~~~~~-G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~--------~~ 431 (547)
+-||++.+ ++ | +.++|++|+||++||++| |+||+.|..+++.|++++++|+++|++|+++++++. ++
T Consensus 3 iydf~~~~-l~~g--~~vsL~~ykGKvvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~e 78 (184)
T d2f8aa1 3 VYAFSARP-LAGG--EPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEE 78 (184)
T ss_dssp GGGCEECB-TTCS--SCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHH
T ss_pred eeeeEEEE-CCCC--CEecHHHcCCCEEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhh
Confidence 45899998 65 6 589999999999999999 999999999999999999999999999999998752 34
Q ss_pred HHHHhhccccCCCCCCcceeeecCCC------hHHHHHh----CCcccCC-------------------CcceeEEEEEc
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKS------MSIARSY----GVLNEET-------------------GIPYRGLFIID 482 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~------~~~~~~~----~v~~~~~-------------------g~~~p~~~lid 482 (547)
+.+|++.. .+....+.+||+....+ ..+.+.+ +....+. ....-+.||||
T Consensus 79 i~~f~~~~-~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLId 157 (184)
T d2f8aa1 79 ILNSLKYV-RPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVG 157 (184)
T ss_dssp HHHHHHHT-SSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEEC
T ss_pred hhhhhhee-ccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEEC
Confidence 55666532 11222378899876432 2232222 2111000 01112789999
Q ss_pred CCCcEEEEEecCCC
Q psy224 483 DKQNLRQITINDLP 496 (547)
Q Consensus 483 ~~G~v~~~~~~~~~ 496 (547)
++|+|+.++.+..+
T Consensus 158 r~G~vv~rf~~~~~ 171 (184)
T d2f8aa1 158 PDGVPLRRYSRRFQ 171 (184)
T ss_dssp TTSCEEEEECTTSC
T ss_pred CCCCEEEEECCCCC
Confidence 99999999944333
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.7e-15 Score=131.88 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=96.2
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhhCC----cEEEEEeCCCh----hhHH
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKKIN----TQVIACSTDSH----FSHL 433 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~~~----~~vi~is~d~~----~~~~ 433 (547)
||+|.| .+| +++++++|+||++||+|| ++||| .|+.+++.+.++++++.+.+ +.++.++.++. ....
T Consensus 2 dF~L~d-~~G--~~vsl~d~~GK~vll~F~-~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (160)
T d1wp0a1 2 PFSLTT-HTG--ERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIA 77 (160)
T ss_dssp CCEEEE-TTS--CEEEGGGGTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHH
T ss_pred CeEEEc-CCC--CEEcHHHhCCCEEEEEEE-CCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHH
Confidence 699999 999 699999999999999999 88886 69999999999999887543 56667776553 3333
Q ss_pred HHhhccccCCCCCCcceeeecCCC---hHHHHHhCCcccCCCc---------ceeEEEEEcCCCcEEEEEecCCCCCCCH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNEETGI---------PYRGLFIIDDKQNLRQITINDLPVGRSV 501 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~~~g~---------~~p~~~lid~~G~v~~~~~~~~~~~~~~ 501 (547)
++.... +.+|..+.+.. ..+.+.|++....... -.+++||||++|+|+..+-+.. +.
T Consensus 78 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~----~~ 146 (160)
T d1wp0a1 78 NYVKEF-------SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK----RK 146 (160)
T ss_dssp HHHHTT-------CTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTC----CH
T ss_pred HHHhhc-------CCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCC----CH
Confidence 444333 66777766543 5677888866432110 0267899999999999883222 45
Q ss_pred HHHHHHHHhh
Q psy224 502 DETLRLVQAF 511 (547)
Q Consensus 502 ~~il~~l~~l 511 (547)
+++.+.|+++
T Consensus 147 ~~i~~~I~~~ 156 (160)
T d1wp0a1 147 GEIAASIATH 156 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665543
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=1.1e-14 Score=129.41 Aligned_cols=143 Identities=13% Similarity=0.167 Sum_probs=93.1
Q ss_pred CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhh---CCcEEEEEeCCChhhHHHHhh
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKK---INTQVIACSTDSHFSHLAWCN 437 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~---~~~~vi~is~d~~~~~~~~~~ 437 (547)
+||+|+| .+| +++++++|+||++||+|| .+||| .|......+..++..+.. ..+.+..++.++..+..+...
T Consensus 7 ~dF~l~d-~~G--~~vsl~~~~GK~vli~f~-~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (169)
T d2b7ka1 7 GPFHLED-MYG--NEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLK 82 (169)
T ss_dssp CCCEEEE-TTS--CEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHH
T ss_pred CCeEEEe-CCC--CEECHHHHCCCEEEEEEe-ccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhh
Confidence 5899999 999 699999999999999999 66664 666667777766666653 356777777665433222222
Q ss_pred ccccCCCCCCcceeeecC---CChHHHHHhCCcccCC-------C---cceeEEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy224 438 IPRNKGGLGDMAIPILSD---KSMSIARSYGVLNEET-------G---IPYRGLFIIDDKQNLRQITINDLPVGRSVDET 504 (547)
Q Consensus 438 ~~~~~~~~~~~~fp~l~D---~~~~~~~~~~v~~~~~-------g---~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~i 504 (547)
...... ...+..... ......+.|++..... + ...|++||||++|+|+..+.+..+.....++|
T Consensus 83 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I 159 (169)
T d2b7ka1 83 EYLSDF---HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKI 159 (169)
T ss_dssp HHHTTS---CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHH
T ss_pred hhhccc---cccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHH
Confidence 221111 333333332 2245556666553221 0 12588999999999999996666666667788
Q ss_pred HHHHHhh
Q psy224 505 LRLVQAF 511 (547)
Q Consensus 505 l~~l~~l 511 (547)
++.|+++
T Consensus 160 ~e~ik~l 166 (169)
T d2b7ka1 160 VEHVKSY 166 (169)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8888875
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.51 E-value=5.8e-14 Score=124.17 Aligned_cols=146 Identities=18% Similarity=0.300 Sum_probs=113.7
Q ss_pred cCCCCCCeeeccc---------cCC---ceeeEeccCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHH-hhCCc-E
Q psy224 357 LEKPAPEFEGQAV---------VNG---QFKNIKLSQY-KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEF-KKINT-Q 420 (547)
Q Consensus 357 ~g~~~p~~~l~~~---------~~G---~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~-~~~~~-~ 420 (547)
.|+.+|+.++..- .+| ++++++++++ +||.+||+++|+.++|.|.. ++|.+.+.+++| +++|+ +
T Consensus 2 ~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~ 81 (179)
T d1xiya1 2 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDD 81 (179)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSE
T ss_pred CCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCce
Confidence 4677787765310 122 2356788887 99999999999999999977 699999999999 57787 7
Q ss_pred EEEEeCCChhhHHHHhhccccCCCCCCcc-eeeecCCChHHHHHhCCcccCC--C---cceeEEEEEcCCCcEEEEEecC
Q psy224 421 VIACSTDSHFSHLAWCNIPRNKGGLGDMA-IPILSDKSMSIARSYGVLNEET--G---IPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 421 vi~is~d~~~~~~~~~~~~~~~~~~~~~~-fp~l~D~~~~~~~~~~v~~~~~--g---~~~p~~~lid~~G~v~~~~~~~ 494 (547)
|++||+|++..+++|.+.. +.+ ..+++|++.+++++||+..+.. + ++.|..+||| +|+|.+.++.+
T Consensus 82 I~~iSvnD~fv~~aW~~~~-------~~~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~vE~ 153 (179)
T d1xiya1 82 IYCITNNDIYVLKSWFKSM-------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEK 153 (179)
T ss_dssp EEEEESSCHHHHHHHHHHT-------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred EEEEecCCHHHHHHHHhhc-------CcceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEEeC
Confidence 9999999999999999875 444 4899999999999999886542 2 3457899999 89999999654
Q ss_pred CCC---------CCCHHHHHHHHHh
Q psy224 495 LPV---------GRSVDETLRLVQA 510 (547)
Q Consensus 495 ~~~---------~~~~~~il~~l~~ 510 (547)
... ..+.+.+|+.|+.
T Consensus 154 ~~~~~~~~dp~~vSsae~iL~~L~~ 178 (179)
T d1xiya1 154 DKQHNIQTDPYDISTVNNVKEFLKN 178 (179)
T ss_dssp SCCTTCSSCCCSTTSHHHHHHHHHC
T ss_pred CCCCCCCCCCcccCCHHHHHHHHhc
Confidence 221 2367888888763
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.94 E-value=1.2e-09 Score=89.68 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=63.3
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
+++..||++||+|| ++||++|....|.+.++.++|++ .+.++.|.. |...
T Consensus 20 l~~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~----------------------------d~~~ 69 (111)
T d1xwaa_ 20 LTKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFAD-NVVVLKVDV----------------------------DECE 69 (111)
T ss_dssp HHHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEET----------------------------TTCH
T ss_pred HHhcCCCEEEEEEE-CCcccCccccchhHHHHhhhccc-ceEEEEEEe----------------------------ecCc
Confidence 55557999999999 99999999999999999988864 244444433 3346
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
.+.++|+|. .+|+.+++ ++|+++..+.|.
T Consensus 70 ~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~ 98 (111)
T d1xwaa_ 70 DIAMEYNIS------SMPTFVFL-KNGVKVEEFAGA 98 (111)
T ss_dssp HHHHHTTCC------SSSEEEEE-ETTEEEEEEESC
T ss_pred chhhcCCCc------cccEEEEE-ECCEEEEEEeCC
Confidence 778899998 58998888 699999999764
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=98.90 E-value=5e-09 Score=85.18 Aligned_cols=87 Identities=16% Similarity=0.260 Sum_probs=69.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.+++.. .+.++-|.+ |..+++++
T Consensus 18 s~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~----------------------------d~~~~l~~ 67 (107)
T d1dbya_ 18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNT----------------------------DESPNVAS 67 (107)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEET----------------------------TTCHHHHH
T ss_pred CCCcEEEEEE-CCCCCCccccChHHHHHHHhhcc-cceEEEEec----------------------------ccchhHHH
Confidence 4689999999 99999999999999999887764 355655544 33467889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|++. .+|+.++++ +|+.+.++.|.. +.+++.+.|++
T Consensus 68 ~~~V~------~~Pt~~~~~-~G~~v~~~~G~~----~~~~l~~~i~~ 104 (107)
T d1dbya_ 68 EYGIR------SIPTIMVFK-GGKKCETIIGAV----PKATIVQTVEK 104 (107)
T ss_dssp HHTCC------SSCEEEEES-SSSEEEEEESCC----CHHHHHHHHHH
T ss_pred Hhccc------ceEEEEEEE-CCeEEEEEeCCC----CHHHHHHHHHH
Confidence 99998 589999995 899999997765 35667776664
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=98.88 E-value=4.1e-09 Score=85.38 Aligned_cols=87 Identities=13% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.++|++ .+.++-|.+| .++.+++
T Consensus 16 ~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~----------------------------~~~~~~~ 65 (105)
T d1nw2a_ 16 GDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVD----------------------------ENPETTS 65 (105)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETT----------------------------TCHHHHH
T ss_pred CCCcEEEEEE-CCCCCCcccccchhhhhhhhcCC-ceEEEEEECC----------------------------CCcccHH
Confidence 4689999999 99999999999999999999865 4777666553 3567788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|+|. .+|+.+++ ++|+.+.++.|..+ .+++.+.|++
T Consensus 66 ~~~V~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~i~~ 102 (105)
T d1nw2a_ 66 QFGIM------SIPTLILF-KGGEPVKQLIGYQP----KEQLEAQLAD 102 (105)
T ss_dssp HTTCC------BSSEEEEE-ETTEEEEEEESCCC----HHHHHHHTTT
T ss_pred HCCcc------eeeEEEEE-ECCEEEEEEECCCC----HHHHHHHHHH
Confidence 99998 58999999 58999999977653 4555555543
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=98.87 E-value=3.9e-09 Score=86.57 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.++|. ++.++.|..|. .++++++
T Consensus 24 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~---------------------------~~~~l~~ 73 (112)
T d1f9ma_ 24 GDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTLAK 73 (112)
T ss_dssp TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHHHH
T ss_pred CCCEEEEEEE-cCCCcchHHHHHHHhhhccccc--cceeecccccc---------------------------cchhhHh
Confidence 3579999999 9999999999999999999885 56777665432 2467889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|+|. .+|+.+++ ++|+++..+.|. ..+++++.|++.+
T Consensus 74 ~~~V~------~~Pt~~~~-k~G~~v~~~~G~-----~~~~l~e~i~~~~ 111 (112)
T d1f9ma_ 74 ELGIR------VVPTFKIL-KENSVVGEVTGA-----KYDKLLEAIQAAR 111 (112)
T ss_dssp HHCCS------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHHH
T ss_pred heeec------cCCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHcc
Confidence 99998 58999999 699999999764 3467777777654
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=3.7e-10 Score=93.72 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=66.8
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.+++.+||++||+|| ++||++|+...|.+....+..+. .++.++.+..+.. .+.
T Consensus 16 ~l~~~~gK~vlv~F~-a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------------~~~ 70 (117)
T d2fwha1 16 ALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAN------------------------DAQ 70 (117)
T ss_dssp HHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTC------------------------CHH
T ss_pred HHHHcCCCeEEEEEe-cccCCcccccchhHHhHHHHHHhccceEEEecccccc------------------------hhH
Confidence 456668999999999 99999999998887443332221 2344444443221 012
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEE--EecCCCCCCCHHHHHHHHHh
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQI--TINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~--~~~~~~~~~~~~~il~~l~~ 510 (547)
+.++++.|++. .+|+++++|++|+++.. ..|. .+.+++++.|++
T Consensus 71 ~~~l~~~~~v~------~~Pt~~~~~~~G~~~~~~~~~G~----~~~~~~~~~l~~ 116 (117)
T d2fwha1 71 DVALLKHLNVL------GLPTILFFDGQGQEHPQARVTGF----MDAETFSAHLRD 116 (117)
T ss_dssp HHHHHHHTTCC------SSSEEEEECTTSCBCGGGCBCSC----CCHHHHHHHHHH
T ss_pred HHHHHhhhehh------hceEEEEEeCCCcEEeccccccc----CCHHHHHHHHhc
Confidence 36778899998 58999999999998743 3333 256778777764
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=98.85 E-value=1.3e-08 Score=82.70 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+|+++|+|| ++||++|....|.+.++.+++.+ .+.++.|.+ |.+.+++++
T Consensus 20 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~----------------------------d~~~~l~~~ 69 (108)
T d1thxa_ 20 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEI----------------------------DPNPTTVKK 69 (108)
T ss_dssp SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEES----------------------------TTCHHHHHH
T ss_pred CCcEEEEEE-CCCCCCccccchHHHHHHHhcCC-cceeceecc----------------------------cccHHHHHH
Confidence 578999999 99999999999999999888864 366666654 345688899
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|+|. .+|+.++++ +|+.+..+.|.. +.+++.+.|++
T Consensus 70 ~~I~------~~Pt~~~~~-~g~~v~~~~G~~----~~~~l~~~i~~ 105 (108)
T d1thxa_ 70 YKVE------GVPALRLVK-GEQILDSTEGVI----SKDKLLSFLDT 105 (108)
T ss_dssp TTCC------SSSEEEEEE-TTEEEEEEESCC----CHHHHHHHHHH
T ss_pred hccc------CCCEEEEEE-CCEEEEEEeCCC----CHHHHHHHHHH
Confidence 9998 589999995 899999997655 45677776664
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=98.83 E-value=9.1e-09 Score=83.10 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=67.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+|+++|+|| ++||++|....|.+.++.+++..+ +.++.|.. |.+..++++
T Consensus 17 ~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~----------------------------d~~~~l~~~ 66 (104)
T d1fb6a_ 17 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSGK-IAVYKLNT----------------------------DEAPGIATQ 66 (104)
T ss_dssp SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEET----------------------------TTCHHHHHH
T ss_pred CCcEEEEEE-cCccCCccccCchhHHHHHhhcCc-cceeEEec----------------------------ccchhhhhh
Confidence 678999999 999999999999999999887642 34433333 445688999
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|+|. .+|+.+++ ++|+.+..+.|.. +.+++.+.|++
T Consensus 67 ~~V~------~~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~i~~ 102 (104)
T d1fb6a_ 67 YNIR------SIPTVLFF-KNGERKESIIGAV----PKSTLTDSIEK 102 (104)
T ss_dssp TTCC------SSSEEEEE-ETTEEEEEEEECC----CHHHHHHHHHH
T ss_pred ccee------eeeEEEEE-EcCeEEEEEeCCC----CHHHHHHHHHH
Confidence 9998 58998888 6999999997765 45666666654
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.1e-09 Score=89.19 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=64.8
Q ss_pred ccCCCCCeEEEEEEeCC-------CCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCccee
Q psy224 379 LSQYKGQYVVLFFYPLD-------FTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP 451 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~-------~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp 451 (547)
+++.+||+++|+|| |+ ||++|+...|.+.++.+++++ ++.++.|.++....
T Consensus 16 l~~~~gk~v~v~F~-a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~~-------------------- 73 (119)
T d1woua_ 16 VEQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPY-------------------- 73 (119)
T ss_dssp HHTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHH--------------------
T ss_pred HHHcCCCEEEEEEE-ecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCcc--------------------
Confidence 45568999999999 85 999999999999999988764 58899998875321
Q ss_pred eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEE
Q psy224 452 ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR 488 (547)
Q Consensus 452 ~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~ 488 (547)
+.|.+..+.++|+|. .+||+++++..+++.
T Consensus 74 -~~d~~~~l~~~~~V~------~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 74 -WKDPNNDFRKNLKVT------AVPTLLKYGTPQKLV 103 (119)
T ss_dssp -HHCTTCHHHHHHCCC------SSSEEEETTSSCEEE
T ss_pred -cchhhhhHHHhCCeE------EEEEEEEEECCeEEe
Confidence 235567889999998 589999997655554
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.80 E-value=6.4e-09 Score=84.48 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=64.5
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-IN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
+.+..+++.|++|| ++|||+|+...|.+.++..+... .+ +.+..|.. +
T Consensus 10 ~~~~~~~v~i~~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~----------------------------~ 60 (107)
T d1a8la2 10 IRNIDQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA----------------------------I 60 (107)
T ss_dssp HTTCCSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG----------------------------G
T ss_pred HHhcCCCeEEEEEE-cCccccchhhChhHHhhhhhhhhccCCcEEEEEecc----------------------------c
Confidence 34445667777899 99999999999999999766543 22 33333322 1
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
..++++++|+|. .+||+ ++.++|+.+.++.|..+ .+++++.|++
T Consensus 61 ~~~~l~~~~~V~------~vPTi-~i~~~G~~~~~~~G~~~----~~~~~~~i~~ 104 (107)
T d1a8la2 61 EYPEWADQYNVM------AVPKI-VIQVNGEDRVEFEGAYP----EKMFLEKLLS 104 (107)
T ss_dssp GCHHHHHHTTCC------SSCEE-EEEETTEEEEEEESCCC----HHHHHHHHHH
T ss_pred cccccccccccc------cceEE-EEEeCCeEEEEEECCCC----HHHHHHHHHH
Confidence 235788999998 58975 55689999999987664 4566666554
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=9.7e-09 Score=83.11 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=66.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.+++. ++.++-|.. |....+++
T Consensus 19 ~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~----------------------------d~~~~~~~ 67 (105)
T d2ifqa1 19 GDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDV----------------------------DDCQDVAS 67 (105)
T ss_dssp TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEET----------------------------TTCHHHHH
T ss_pred CCCEEEEEEE-cCCccchhhhhhhhhhhccccc--cceeeeccc----------------------------ccCHhHHH
Confidence 4689999999 9999999999999999988775 344444433 33467788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+||.+++ ++|+.+.++.|. +.+++.+.|+++
T Consensus 68 ~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~~~ 104 (105)
T d2ifqa1 68 ECEVK------CMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL 104 (105)
T ss_dssp HTTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred HcCce------EEEEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHhh
Confidence 99998 58999999 699999999763 245666666643
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=98.79 E-value=1.3e-08 Score=83.40 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.+++.. .+.++-|.+|. +.++++
T Consensus 23 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 72 (112)
T d1ep7a_ 23 EHKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVAE 72 (112)
T ss_dssp HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHHH
T ss_pred cCCeEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeeccc----------------------------cccccc
Confidence 4789999999 99999999999999999998864 47777776542 457888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. .+|+++++ ++|+.+..+.|. +.+++.+.|++.
T Consensus 73 ~~~v~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k~ 109 (112)
T d1ep7a_ 73 AAGIT------AMPTFHVY-KDGVKADDLVGA-----SQDKLKALVAKH 109 (112)
T ss_dssp HHTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred ccccc------CCCEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHHH
Confidence 99998 58998888 699999999763 456666666654
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.4e-08 Score=82.64 Aligned_cols=87 Identities=15% Similarity=0.272 Sum_probs=66.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|+++|+|| ++||++|+...|.+.++.+++.. .+.++.+.. |.+..+++
T Consensus 19 ~~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~----------------------------d~~~~l~~ 68 (108)
T d2trxa_ 19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNI----------------------------DQNPGTAP 68 (108)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEET----------------------------TTCTTHHH
T ss_pred CCCcEEEEEE-CCCCCCccccCcHHHHHHHHhhc-ceeeeeccc----------------------------cchhhHHH
Confidence 3689999999 99999999999999988877643 344444433 34567889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+.+++ ++|+.+..+.|.. +.+++.+.|++
T Consensus 69 ~~~v~------~~PT~~~~-~~G~~v~~~~G~~----~~~~l~~~i~~ 105 (108)
T d2trxa_ 69 KYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDA 105 (108)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHH
T ss_pred HhCCC------cEEEEEEE-ECCEEEEEEeCCC----CHHHHHHHHHH
Confidence 99998 58988888 6899999997665 45666666654
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.78 E-value=1.5e-08 Score=83.35 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=65.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.++|+ ++.++-|..| .+..+++
T Consensus 27 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~----------------------------~~~~l~~ 75 (114)
T d1xfla_ 27 SKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTD----------------------------ELKSVAS 75 (114)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETT----------------------------TSHHHHH
T ss_pred cCCeEEEEEE-cCCCCCccccccchhhhccccc--ccceeEEEee----------------------------eceeecc
Confidence 4789999999 9999999999999999988775 4555554432 3467888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+|+|. .+|+++++ ++|+++..+.|. +.+++.+.++
T Consensus 76 ~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~ 110 (114)
T d1xfla_ 76 DWAIQ------AMPTFMFL-KEGKILDKVVGA-----KKDELQSTIA 110 (114)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHH
T ss_pred cccee------eeEEEEEE-ECCEEEEEEeCc-----CHHHHHHHHH
Confidence 99998 58998888 799999999763 3456665554
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.1e-08 Score=83.08 Aligned_cols=86 Identities=8% Similarity=0.032 Sum_probs=67.7
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
..+|++||+|| ++||++|....|.+.++.+++. ++.++-|..| .+++++
T Consensus 19 ~~~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d----------------------------~~~~l~ 67 (107)
T d1gh2a_ 19 AGSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVH----------------------------QCQGTA 67 (107)
T ss_dssp TTTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETT----------------------------TSHHHH
T ss_pred CCCCEEEEEEE-CCCCCCccccchhhhccccccc--cccccccccc----------------------------cchhhh
Confidence 34789999999 9999999999999999998875 4666655533 346788
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.|++. .+|+.+++ ++|+.+..+.|. +.+++.+.+++
T Consensus 68 ~~~~v~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k 104 (107)
T d1gh2a_ 68 ATNNIS------ATPTFQFF-RNKVRIDQYQGA-----DAVGLEEKIKQ 104 (107)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHH
T ss_pred hhcCce------eceEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHH
Confidence 899998 58999988 799999999763 34566555553
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=98.76 E-value=2.6e-09 Score=88.58 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
..+++++.|| ++|||+|+...|.|.++.++|.+..+.++.|..| .++++++
T Consensus 29 ~~~~vll~f~-a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d----------------------------~~~~l~~ 79 (119)
T d2es7a1 29 GDGVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE----------------------------QSEAIGD 79 (119)
T ss_dssp CSEEEEECCC-SCC----CCHHHHHHHHHHTCTTSCCEEEEECHH----------------------------HHHHHHH
T ss_pred CCcEEEEeec-CCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC----------------------------CCHHHHH
Confidence 4578888899 9999999999999999999987656666655432 2367889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|+|. .+|+.+++ ++|+.+..+.|.. +.+++++.++++
T Consensus 80 ~~~V~------~~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~i~~l 117 (119)
T d2es7a1 80 RFNVR------RFPATLVF-TDGKLRGALSGIH----PWAELLTLMRSI 117 (119)
T ss_dssp TTTCC------SSSEEEEE-SCC----CEESCC----CHHHHHHHHHHH
T ss_pred hcCcC------cceEEEEE-EcCeEEEEeeCCC----CHHHHHHHHHHH
Confidence 99998 58999999 6999999997666 456777777654
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=98.75 E-value=6.4e-09 Score=85.36 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=61.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++||+|| ++||++|....|.|.++.+++. ++.++-|..| ...++++
T Consensus 25 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d----------------------------~~~~l~~ 73 (113)
T d1r26a_ 25 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDAD----------------------------NNSEIVS 73 (113)
T ss_dssp SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETT----------------------------TCHHHHH
T ss_pred CCCeEEEEEE-CCCCccchhhceeccccccccc--cccccccccc----------------------------cchhhHH
Confidence 4679999999 9999999999999999998875 6777766553 2467889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
.|++. .+|+.+++ ++|+.+.++.|.
T Consensus 74 ~~~V~------~~Pt~~~~-~~G~~v~~~~G~ 98 (113)
T d1r26a_ 74 KCRVL------QLPTFIIA-RSGKMLGHVIGA 98 (113)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESS
T ss_pred Hcccc------CCCEEEEE-ECCEEEEEEeCC
Confidence 99998 58998888 699999999763
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.75 E-value=1e-11 Score=110.30 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=40.6
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
-+++++++++.+|+|| ++|||+|+.++|.|.+++++++ ++.+..|+.|
T Consensus 47 ~~l~~~~~~~~~l~~~-~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d 94 (166)
T d1z6na1 47 ERLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKG 94 (166)
T ss_dssp HHHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHH
T ss_pred HHHHHhcCCeEEEEEE-eCcCccHHHHHHHHHHHHHHCC--CCcEEEEECc
Confidence 3567888999999999 9999999999999999999876 4566666654
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=98.71 E-value=1.6e-08 Score=82.92 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=65.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.+++. ++.++-|.. |..+.+++
T Consensus 25 ~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~----------------------------d~~~~l~~ 73 (113)
T d1ti3a_ 25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDV----------------------------DELKAVAE 73 (113)
T ss_dssp SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEET----------------------------TTCHHHHH
T ss_pred CCCEEEEEEE-cCccccchhhhhhhhhhhccCC--CceEEeeee----------------------------eccccccc
Confidence 4689999999 9999999999999999988774 455554433 23467889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|+|. .+|+.+++ ++|+.+..+.|. + .+++.+.|++
T Consensus 74 ~~~I~------~~Pt~~~~-k~G~~v~~~~G~-~----~~~l~~~i~k 109 (113)
T d1ti3a_ 74 EWNVE------AMPTFIFL-KDGKLVDKTVGA-D----KDGLPTLVAK 109 (113)
T ss_dssp HHHCS------STTEEEEE-ETTEEEEEEECC-C----TTHHHHHHHH
T ss_pred cCeec------ccceEEEE-ECCEEEEEEcCC-C----HHHHHHHHHH
Confidence 99998 58998888 599999999763 2 2455555554
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=3.6e-09 Score=89.26 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=71.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|.|| +.|||+|....|.|.++.++|..+.+.+.-|.+| .+.++++
T Consensus 35 ~~~vVll~f~-a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d----------------------------~~~~la~ 85 (132)
T d2hfda1 35 PDGVVLLSSD-PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE----------------------------QSEAIGD 85 (132)
T ss_dssp SEEEEEECSC-CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHH----------------------------HHHHHHH
T ss_pred CCcEEEEEee-CCCChhHHHHHHHHHHHHHHccCCcceeEEEEec----------------------------CCHHHHH
Confidence 3478888999 9999999999999999999987666666555432 2468899
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|+|. .+|+++++ ++|+.+..+.|.. +.+++++.|+.+-
T Consensus 86 ~~~V~------~~PT~~~~-~~G~~v~~~~G~~----~~~~l~~~i~~ll 124 (132)
T d2hfda1 86 RFGVF------RFPATLVF-TGGNYRGVLNGIH----PWAELINLMRGLV 124 (132)
T ss_dssp HHTCC------SCCEEEEE-ETTEEEEEECCCS----CHHHHHHHHHHHH
T ss_pred hhccC------cceeEEEE-EcCcEeeeecCCC----CHHHHHHHHHHHh
Confidence 99998 58999988 7999999996655 4667777777554
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=3.6e-08 Score=83.50 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=72.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.++|++ .+.++-|.+|. ++++++
T Consensus 21 ~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~----------------------------~~~la~ 70 (137)
T d1qgva_ 21 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITE----------------------------VPDFNK 70 (137)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------CCTTTT
T ss_pred CCCEEEEEEE-CCCCccchhcChHHHHHHHHhhc-cceEEEeeccc----------------------------cchhhh
Confidence 4689999999 99999999999999999999974 36777776644 245667
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhhHhhhhc
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV------GRSVDETLRLVQAFQFVAEH 517 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~------~~~~~~il~~l~~l~~~~~~ 517 (547)
+|+|. .+|+.+++ ++|+.+....|..+. -++.++.++.++.+.-.+..
T Consensus 71 ~~~I~------~~PT~~~f-~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~~~~ 124 (137)
T d1qgva_ 71 MYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARK 124 (137)
T ss_dssp SSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTT
T ss_pred hcCee------eEEEEEEE-eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHHHhh
Confidence 89988 58999999 588888777554321 13567777777777544444
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.59 E-value=1e-07 Score=76.58 Aligned_cols=85 Identities=7% Similarity=0.183 Sum_probs=65.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++||+|| ++||++|....|.+.++.++|. ++.++-+..| ...++++
T Consensus 17 ~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d----------------------------~~~~~~~ 65 (103)
T d1syra_ 17 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVD----------------------------EVSEVTE 65 (103)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT----------------------------TTHHHHH
T ss_pred CCCcEEEEEe-CCcccCcccccccchhhhhccc--ceEEEeeccc----------------------------cCcceee
Confidence 4689999999 9999999999999999998875 4455555443 3457888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|+|. .+||.+++ ++|+.+..+.|. +.+++.+.|++
T Consensus 66 ~~~V~------~~Pt~i~~-k~G~~v~~~~G~-----~~~~l~~~i~k 101 (103)
T d1syra_ 66 KENIT------SMPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEK 101 (103)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHT
T ss_pred eeeee------cceEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHh
Confidence 99998 58998888 699999999763 23555555553
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=98.59 E-value=3.8e-08 Score=80.78 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=45.9
Q ss_pred CCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+|+|+||||+|+|++|++|+|++|++ +++.+. .+++.+++++++|+.+..++..+
T Consensus 2 sm~y~lGID~GGT~tk~~l~d~~G~i-l~~~~~------------~~~~~~~~~~~~~~~i~~~i~~~ 56 (114)
T d1zc6a1 2 SIRYLIGVDGGGTGTRIRLHASDGTP-LAMAEG------------GASALSQGIAKSWQAVLSTLEAA 56 (114)
T ss_dssp CCCEEEEEEECSSCEEEEEEETTCCE-EEEEEE------------SCCCGGGCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEcCcceEEEEEEcCCCCE-EEEEEc------------cCCCcccCHHHHHHHHHHHHHHH
Confidence 58899999999999999999999998 766532 23456899999999988887664
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.57 E-value=2.4e-08 Score=77.33 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=56.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+|+.|++|| ++||++|+...|.+.++.+++.. .+.++.+.. |.+++++++
T Consensus 2 ~kv~v~~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~----------------------------d~~~~la~~ 51 (85)
T d1fo5a_ 2 SKVKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINV----------------------------MENPQKAME 51 (85)
T ss_dssp CCEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEES----------------------------SSSCCTTTS
T ss_pred CceEEEEEE-CCCCcChHhhhhhcccccccccc-ccccccccc----------------------------ccccccccc
Confidence 588999999 99999999999999988876542 233333322 334556678
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|+|. .+|++ +++++|++ +|.. +.+++++.|++
T Consensus 52 ~~V~------~~Pt~-~i~~~g~~----~G~~----~~~~l~~~i~~ 83 (85)
T d1fo5a_ 52 YGIM------AVPTI-VINGDVEF----IGAP----TKEALVEAIKK 83 (85)
T ss_dssp TTTC------CSSEE-EETTEEEC----CSSS----SSHHHHHHHHH
T ss_pred CCce------EeeEE-EEECCcEE----ECCC----CHHHHHHHHHh
Confidence 9988 58985 56777753 2433 45677777664
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.51 E-value=1.5e-07 Score=77.24 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=65.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++|||+|+...|.+.++.++++ .++..+..+...+.. ..+.+.+
T Consensus 25 ~~~~~~v~f~-~~~C~~C~~~~p~l~~~~~~~~---~~v~~v~~~~~~~~~----------------------~~~~~~~ 78 (115)
T d1zmaa1 25 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLN----------------------DLQAFRS 78 (115)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHH----------------------HHHHHHH
T ss_pred cCCCEEEEEc-CCCCccHHHHHHHHHHHHHHhh---hhhhhheeecccccc----------------------ccccccc
Confidence 4678999999 9999999999999999988874 445566665432221 1246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~ 507 (547)
+|+|. .+|+.+++. +|+++.++.|..+ .+++.+.
T Consensus 79 ~~~V~------~~PTli~~~-~gk~~~~~~G~~~----~~el~~f 112 (115)
T d1zmaa1 79 RYGIP------TVPGFVHIT-DGQINVRCDSSMS----AQEIKDF 112 (115)
T ss_dssp HHTCC------SSCEEEEEE-TTEEEEECCTTCC----HHHHHHH
T ss_pred ccccc------cccEEEEEE-CCEEEEEEcCCCC----HHHHHHH
Confidence 99998 589999995 9999988866553 4454443
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=2.7e-07 Score=76.09 Aligned_cols=91 Identities=10% Similarity=0.153 Sum_probs=69.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++.++|.|| ++||++|....|.+.++.+.+++.++.+.-|.++ .++++++
T Consensus 26 ~~~~~lV~fy-a~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~----------------------------~~~~l~~ 76 (119)
T d2b5ea4 26 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT----------------------------ENQDLCM 76 (119)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETT----------------------------TCHHHHH
T ss_pred cCCeEEEEEE-CCccCcccccchhhhhhhhhhcccceeeeeeecc----------------------------chHHHHH
Confidence 4678999999 9999999999999999999987767887777653 2467888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|+|. .+|+.+++ ++|+......+.. .++.+++++.|++.
T Consensus 77 ~~~v~------~~Pti~~f-~~g~~~~~~~y~g--~~~~~~l~~fi~k~ 116 (119)
T d2b5ea4 77 EHNIP------GFPSLKIF-KNSDVNNSIDYEG--PRTAEAIVQFMIKQ 116 (119)
T ss_dssp HTTCC------SSSEEEEE-ETTCTTCEEECCS--CCSHHHHHHHHHHH
T ss_pred Hhccc------cCCeEEEE-ECCEEeeeEEecC--CCCHHHHHHHHHHh
Confidence 99988 58999999 6776554432221 23678888887753
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.43 E-value=5.3e-07 Score=71.19 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=61.1
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.++++.+.++.|+ ++|||+|+...|.+.++..++. ++.+..|..+ .+++
T Consensus 11 k~l~~~~~i~~F~-s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~----------------------------~~~~ 59 (96)
T d1hyua4 11 RDIDGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGG----------------------------TFQN 59 (96)
T ss_dssp HHCCSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETT----------------------------TCHH
T ss_pred HhcCCCeEEEEEE-CCCCcchHHHHHHHHHHHHhCC--ceEEEEEecc----------------------------cchH
Confidence 3456778899999 9999999999999998876643 3555444333 3567
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
++..|+|. .+|++++ +|+.+ +.|.. +.+++++.|+
T Consensus 60 l~~~~~I~------~vPt~~~---ng~~~--~~G~~----~~~~l~~~le 94 (96)
T d1hyua4 60 EITERNVM------GVPAVFV---NGKEF--GQGRM----TLTEIVAKVD 94 (96)
T ss_dssp HHHHTTCC------SSSEEEE---TTEEE--EESCC----CHHHHHHHHC
T ss_pred HHhhcccc------cccEEEE---CCEEE--EecCC----CHHHHHHHHh
Confidence 88899998 5899754 77776 33443 5788887764
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.2e-07 Score=78.46 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=63.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++|.+||.|| ++||++|....|.+.++.+++...+ +.++-|.+ |.+..+
T Consensus 23 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~----------------------------~~~~~l 73 (120)
T d1meka_ 23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA----------------------------TEESDL 73 (120)
T ss_dssp HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEET----------------------------TTCCSS
T ss_pred cCCcEEEEEE-CCCcCCccccchhhhhhcccccccccceeeecccc----------------------------ccchhH
Confidence 4689999999 9999999999999999998886544 33333333 224567
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEE--EEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQ--ITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~--~~~~~~~~~~~~~~il~~l~~l 511 (547)
.++|++. .+|+++++. +|+... .+.| .+..+++++.|++-
T Consensus 74 ~~~~~i~------~~Pt~~~~~-~G~~~~~~~~~g----~~~~~~l~~fi~~~ 115 (120)
T d1meka_ 74 AQQYGVR------GYPTIKFFR-NGDTASPKEYTA----GREADDIVNWLKKR 115 (120)
T ss_dssp HHHHTCC------SSSEEEEEE-SSCSSSCEECCC----CSSHHHHHHHHHTT
T ss_pred HHHhCCc------cCCeEEEEE-CCeEeeeEEecC----CCCHHHHHHHHHHh
Confidence 7889998 589998884 554432 3322 23678888888753
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.30 E-value=6.8e-07 Score=68.82 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=55.3
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
.|..|| ++||++|+...|.+.++.++|.+ ++.++-|..| .+++++++|+|
T Consensus 4 ~v~~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d----------------------------~~~~l~~~~~V 53 (85)
T d1nhoa_ 4 NIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIM----------------------------VDREKAIEYGL 53 (85)
T ss_dssp CEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTT----------------------------TCGGGGGGTCS
T ss_pred EEEEEE-CCCCcchHHHHHHHhhhcccccc-cccccccccc----------------------------cchhhHHhcCc
Confidence 466789 99999999999999999999864 3666655443 34567778999
Q ss_pred cccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 467 ~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
. .+|+.+ +|..| + +.|.. +.+++++.|++
T Consensus 54 ~------~~Pt~~-~~~~~--~--~~G~~----~~~~l~~~i~~ 82 (85)
T d1nhoa_ 54 M------AVPAIA-INGVV--R--FVGAP----SREELFEAIND 82 (85)
T ss_dssp S------CSSEEE-ETTTE--E--EECSS----CCHHHHHHHHH
T ss_pred e------EeCEEE-ECCcE--E--EEcCC----CHHHHHHHHHH
Confidence 8 589754 55443 3 33443 34666666654
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3e-07 Score=77.65 Aligned_cols=99 Identities=9% Similarity=0.119 Sum_probs=61.2
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
+.-.||+++|+|| ++||++|+...+.+.+..+..+ .+..++.|..|..... . ..
T Consensus 21 A~~~~Kpvlv~F~-a~wC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~--------------~---------~~- 74 (135)
T d1sena_ 21 AAASGLPLMVIIH-KSWCGACKALKPKFAESTEISE-LSHNFVMVNLEDEEEP--------------K---------DE- 74 (135)
T ss_dssp HHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEGGGSC--------------S---------CG-
T ss_pred HHHcCCcEEEEEE-ecCCCCceecchhhhhhHHHHH-hcCCcEEEeCCCCcCH--------------H---------HH-
Confidence 3446899999999 9999999999999887754433 2234555555432110 0 00
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC------CCCCHHHHHHHHHhh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP------VGRSVDETLRLVQAF 511 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~------~~~~~~~il~~l~~l 511 (547)
.+... +..+|+.+++|++|+++....+... ...+.+++++.+++.
T Consensus 75 ---~~~~~----~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a 125 (135)
T d1sena_ 75 ---DFSPD----GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 125 (135)
T ss_dssp ---GGCTT----CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred ---HHHhh----cccceeEEEECCCCeEEEEecCCCCCcchhccCCCHHHHHHHHHHH
Confidence 01100 0136999999999999876654322 123567777666543
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.09 E-value=1e-05 Score=66.52 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+.|.+||.|| ++||++|+. |++.++++++++. .+.+.-|.++.... +.+.++
T Consensus 18 ~~~~~lV~Fy-a~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~-----------------------~~n~~l 71 (122)
T d2c0ga2 18 RFPYSVVKFD-IASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGE-----------------------LENKAL 71 (122)
T ss_dssp TSSEEEEEEE-ESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTT-----------------------CTTHHH
T ss_pred cCCcEEEEEE-CCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccccc-----------------------ccCHHH
Confidence 4589999999 999999994 8999999988643 35555555543211 236889
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++.|++.. ..+|+.+++.+++.....+ +....+..+.+++.|++
T Consensus 72 ~~~~~i~~----~~~PTi~~f~~g~~~~~~~--~~~g~rt~~~l~~fv~~ 115 (122)
T d2c0ga2 72 GDRYKVDD----KNFPSIFLFKGNADEYVQL--PSHVDVTLDNLKAFVSA 115 (122)
T ss_dssp HHHTTCCT----TSCCEEEEESSSSSSEEEC--CTTSCCCHHHHHHHHHH
T ss_pred HHHhhccc----CCCCcEEEEeCCccccccc--ccCCCCCHHHHHHHHHH
Confidence 99999862 1489999997554443333 23344578888888764
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.7e-05 Score=67.50 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=62.9
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
-++|+++|+|+ +.||+.|...-... .++.+.+ +.++.++.|..+.++ ..
T Consensus 40 ~~~K~llV~~~-~~~C~~C~~m~~~v~~d~~V~~~l-~~~fV~~~v~~~~~e--------------------------~~ 91 (147)
T d2dlxa1 40 MQNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNII-REHFIFWQVYHDSEE--------------------------GQ 91 (147)
T ss_dssp HHTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHH-HHTEEEEEEESSSHH--------------------------HH
T ss_pred HcCCcEEEEEe-cCCCCchHHHHHhccCCHHHHHHH-hhheeEeeecccchh--------------------------hh
Confidence 35899999999 99999998764432 2222222 225666666555431 24
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDD-KQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~-~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+++.|++. .+|+.++||+ +|+++..+ +.. +.++.++.|+++-
T Consensus 92 ~~~~~y~v~------~~Pti~~idp~~ge~v~~~-~~~----~~~~fl~~L~~fl 135 (147)
T d2dlxa1 92 RYIQFYKLG------DFPYVSILDPRTGQKLVEW-HQL----DVSSFLDQVTGFL 135 (147)
T ss_dssp HHHHHHTCC------SSSEEEEECTTTCCCCEEE-SSC----CHHHHHHHHHHHH
T ss_pred hhhhheecC------ceeEEEEEeCCCCeEeccc-CCC----CHHHHHHHHHHHH
Confidence 567888987 4899999997 68888776 333 5678888877654
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.05 E-value=6.6e-07 Score=75.98 Aligned_cols=90 Identities=12% Similarity=0.244 Sum_probs=62.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|.++|.|| ++||++|....|.+.++.+.|+..+..+..+.+|.. ..+++
T Consensus 29 ~~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~----------------------------~~~~~ 79 (140)
T d2b5ea1 29 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT----------------------------ENDVR 79 (140)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG----------------------------GCCCS
T ss_pred CCCCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEeeecc----------------------------chhcc
Confidence 3678999999 999999999999999999999865544444444321 11234
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|+|. .+|+.+++. +|+......+ .-.+..+++++.|++
T Consensus 80 ~~~v~------~~Ptl~~f~-~g~~~~~~~y--~G~~t~~~l~~fi~~ 118 (140)
T d2b5ea1 80 GVVIE------GYPTIVLYP-GGKKSESVVY--QGSRSLDSLFDFIKE 118 (140)
T ss_dssp SCCCS------SSSEEEEEC-CTTSCCCCBC--CSCCCHHHHHHHHHH
T ss_pred ccccc------cCCeEEEEE-CCEEcceeEe--CCCCCHHHHHHHHHH
Confidence 56776 589999995 6665543311 112467888888775
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=97.72 E-value=9.3e-06 Score=66.02 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~ 417 (547)
.+|++||.|| ++||++|+...|.+.++.+.|...
T Consensus 19 ~~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~ 52 (116)
T d2djja1 19 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKS 52 (116)
T ss_dssp TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTS
T ss_pred CCCCEEEEEE-ecccccccccchHHHHHHHHHhcc
Confidence 4689999999 999999999999999999999754
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.60 E-value=0.00028 Score=57.74 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=56.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-------hCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-------KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-------~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
+.+.++|.|| +.||+.| ...|....+...+. ..++.+.-|.+ +
T Consensus 27 ~~~~~~V~Fy-apwC~~~-~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~----------------------------~ 76 (124)
T d1a8ya1 27 KYEVLALLYH-EPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDS----------------------------E 76 (124)
T ss_dssp HCSEEEEEEE-CCCCSSH-HHHHHHHHHHHHHHHHHHHTGGGTEEEEEEET----------------------------T
T ss_pred hCCeEEEEEE-CCCccch-hhhhHHHHHHHHHHHHHHHhccCCeEEEEEEe----------------------------e
Confidence 4578899999 9999854 45555555444442 23344433333 3
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+.++++.|+|. .+||.+++. +|+.+ .+.| .++.+.+++.|.++
T Consensus 77 ~~~~l~~~~~I~------~yPTi~~f~-~g~~~-~y~G----~r~~~~l~~fi~~~ 120 (124)
T d1a8ya1 77 KDAAVAKKLGLT------EEDSIYVFK-EDEVI-EYDG----EFSADTLVEFLLDV 120 (124)
T ss_dssp TSHHHHHTTTCC------STTCEEEEE-SSSEE-ECCS----CCSHHHHHHHHHHH
T ss_pred cccchhhccccc------cCCcEEEec-cCccE-EeeC----CCCHHHHHHHHHHh
Confidence 457888999998 589999995 67776 3323 34677888776543
|
| >d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylmannosamine kinase NanK species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=5.5e-05 Score=61.61 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=42.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLP 70 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d 70 (547)
++||||+|+|++|++++|.+|++ +...+.+++ ..++++.+.+.+...+..+.
T Consensus 2 ~~lgiDiGgT~i~~~l~d~~G~i-~~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~~ 53 (119)
T d2aa4a1 2 TTLAIDIGGTKLAAALIGADGQI-RDRRELPTP-------------ASQTPEALRDALSALVSPLQ 53 (119)
T ss_dssp CEEEEEECSSEEEEEEECTTCCE-EEEEEEECC-------------SSCCHHHHHHHHHHHHTTTG
T ss_pred eEEEEEeCcCEEEEEEEcCCCCE-EEeEEEecc-------------ccCcHHHHHHHHHHHHHHhh
Confidence 48999999999999999999998 777766652 35677888888888877663
|
| >d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative regulator protein YcfX species: Salmonella typhimurium [TaxId: 90371]
Probab=97.37 E-value=9.4e-05 Score=59.92 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=41.2
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCch
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKD 72 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r 72 (547)
|||||+|+|++|++++|.+|++ +.+.+.+++ ..+++.+++.+...+..+..+
T Consensus 2 yiGiDiGgT~i~~~l~d~~g~i-~~~~~~~t~--------------~~~~~~~~~~i~~~i~~~~~~ 53 (117)
T d2ap1a2 2 YYGFDIGGTKIALGVFDSTRRL-QWEKRVPTP--------------HTSYSAFLDAVCELVEEADQR 53 (117)
T ss_dssp EEEEEECSSEEEEEEEETTCCE-EEEEEEECC--------------CSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECcceEEEEEEeCCCCE-EEEEEEeec--------------ccCHHHHHHHHHHHHHHHHhh
Confidence 5999999999999999999998 777766542 345778888888877765443
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.34 E-value=8.1e-05 Score=68.92 Aligned_cols=63 Identities=10% Similarity=0.193 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMR 351 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~ 351 (547)
..++++...++.+...+...+.. -..+++|+++|| +++|+.+++.+.+.++.++.+++.....
T Consensus 182 ~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~Iv~gGG-v~~~~~~~~~l~~~l~~~i~~~~~~~~a 244 (259)
T d1huxa_ 182 DKIDIIAGIHRSVASRVIGLANR----VGIVKDVVMTGG-VAQNYGVRGALEEGLGVEIKTSPLAQYN 244 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT----TCCCSSEEEESG-GGGCHHHHHHHHHHHCSCEECCGGGGGH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh----ccCCCcEEEEcc-ccccHHHHHHHHHHHCCCEEcCCCccHH
Confidence 67777777777776666554431 123678988888 5999999999999999999998866543
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00041 Score=56.10 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=41.6
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+++|||||-|+|++|++|+|++|++ +++.+... ........+++++.+...+...
T Consensus 2 ~~~~~GIDgGGTkT~~~l~d~~G~~-l~~~~~g~-----------~N~~~~~~~~~~~~i~~~i~~~ 56 (117)
T d2ch5a2 2 AAIYGGVEGGGTRSEVLLVSEDGKI-LAEADGLS-----------TNHWLIGTDKCVERINEMVNRA 56 (117)
T ss_dssp SCEEEEEEECTTCEEEEEEETTSCE-EEEEEECC-----------CCHHHHCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcChhhEEEEEECCCCCE-EEEEEcCC-----------CCcchhhHHHHHHHHHHHHHHH
Confidence 3689999999999999999999998 77654332 1124567777888777776654
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.02 E-value=0.00031 Score=63.45 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=63.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++.++||+|| ++||+.|....+.|.++..+|. .+.++-|..+.. . +..
T Consensus 119 ~~~~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~~----~-------------------------~~~ 166 (217)
T d2trcp_ 119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNT----G-------------------------AGD 166 (217)
T ss_dssp TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHH----T-------------------------CST
T ss_pred CCCeEEEEEE-cCCCCChhhhhhhHHHHhhhcc--cceEEEEccccc----h-------------------------hHH
Confidence 4678999999 9999999999999999998886 477777643210 0 012
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV---GRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++ ++|+++..+++.... ....+++-..|.+.
T Consensus 167 ~~~i~------~lPtl~~y-k~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~ 211 (217)
T d2trcp_ 167 RFSSD------VLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp TSCGG------GCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred hCCCC------CCCeEEEE-ECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence 35565 48999999 799999999765432 22345555555443
|
| >d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Hypothetical protein SP2142 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.00 E-value=0.0005 Score=55.23 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=35.3
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
|++++||+|+|++|++++|.+|++ +...+.++ ..+.+++++.+.+.+.
T Consensus 1 M~i~~iDiGgT~i~~~l~d~~g~i-~~~~~~~t---------------~~~~~~~~~~i~~~~~ 48 (114)
T d2gupa1 1 MTIATIDIGGTGIKFASLTPDGKI-LDKTSIST---------------PENLEDLLAWLDQRLS 48 (114)
T ss_dssp CCEEEEEEETTEEEEEEECTTCCE-EEEEEECC---------------CSSHHHHHHHHHHHHT
T ss_pred CeEEEEEeCcccEEEEEEcCCCCE-EEEEEEcc---------------cccHHHHHHHHHHHhh
Confidence 358999999999999999999998 76655443 1235666666665543
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.93 E-value=0.00056 Score=53.54 Aligned_cols=82 Identities=7% Similarity=0.087 Sum_probs=54.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
..-++|+.|+ +.|||+|....+.|.++..+|. .++ +..|. |.+.++.+
T Consensus 14 ~~~p~i~lft-~~~C~~C~~a~~~L~~~~~~~~---~~~--v~vd~--------------------------~~~~~l~~ 61 (100)
T d1wjka_ 14 RALPVLTLFT-KAPCPLCDEAKEVLQPYKDRFI---LQE--VDITL--------------------------PENSTWYE 61 (100)
T ss_dssp CCCCEEEEEE-CSSCHHHHHHHHHTSTTSSSSE---EEE--EETTS--------------------------STTHHHHH
T ss_pred CCCCEEEEEE-CCCCCChHHHHHHHHHhhhhcc---eEE--Eeccc--------------------------ccCHHHHH
Confidence 3457788899 9999999999888887765542 222 22222 34578888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. +|+.+ | +|+.+.. +.. +.+++.+.|+++.
T Consensus 62 ~y~~~-------VPvl~-i--dg~~~~~--g~~----d~~~L~~~L~~l~ 95 (100)
T d1wjka_ 62 RYKFD-------IPVFH-L--NGQFLMM--HRV----NTSKLEKQLRKLS 95 (100)
T ss_dssp HSSSS-------CSEEE-E--SSSEEEE--SSC----CHHHHHHHHHSSS
T ss_pred Hhccc-------CCcee-e--cCceEEe--CCC----CHHHHHHHHHHHh
Confidence 99975 68654 4 5666533 233 5678888888765
|
| >d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.002 Score=52.54 Aligned_cols=53 Identities=25% Similarity=0.414 Sum_probs=41.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
..|+||||+|.++++++++|.+|++ +.+.+.+++ ...+++...+.+.+.+..+
T Consensus 3 ~~~~igidig~~~i~~~l~d~~G~i-l~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~ 55 (128)
T d2hoea3 3 CAYVLGIEVTRDEIAACLIDASMNI-LAHEAHPLP-------------SQSDREETLNVMYRIIDRA 55 (128)
T ss_dssp GCEEEEEEECSSEEEEEEEETTCCE-EEEEEEECC-------------SSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEECCCEEEEEEEcCCCCE-EEEEEEecc-------------cCCCHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998 877776663 2456777777776666554
|
| >d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative fructokinase YhdR species: Bacillus subtilis [TaxId: 1423]
Probab=96.39 E-value=0.0029 Score=50.82 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=34.6
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
++|||+|+|++|++++|.+|++ +...+.++ ..+++.++.+.+.+..
T Consensus 2 ~~giDiGgT~i~~~l~d~~g~i-~~~~~~~t----------------~~~~~~~~~i~~~~~~ 47 (118)
T d1xc3a1 2 LGGIEAGGTKFVCAVGREDGTI-IDRIEFPT----------------KMPDETIEKVIQYFSQ 47 (118)
T ss_dssp EEEEEECSSEEEEEEECTTSCE-EEEEEEEC----------------CCHHHHHHHHHHHHTT
T ss_pred EEEEEeccCEEEEEEEcCCCCE-EEEEEecC----------------CCHHHHHHHHHHHHhh
Confidence 7999999999999999999998 76655443 2356666666665543
|
| >d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK species: Arthrobacter sp. KM [TaxId: 184230]
Probab=96.35 E-value=0.0023 Score=52.17 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=37.8
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecc-cccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCc
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSS-ESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPK 71 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~-~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~ 71 (547)
.++||||+|.|++|++++|.++..++.. .+.+++ ....++.+.+.+...+..+..
T Consensus 2 ~~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~-------------~~~~~~~~~~~i~~~~~~l~~ 57 (129)
T d1woqa1 2 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP-------------QPATPESVAEAVALVVAELSA 57 (129)
T ss_dssp CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC-------------SSCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECcceEEEEEEECCCCEEEEEEeecccc-------------cCCCHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999865542432 233331 244577788877777766543
|
| >d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.0033 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.4
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
+|+|++|||+|++|.+++|.++.+
T Consensus 2 ~~~L~~DIGGTn~r~alv~~~~~~ 25 (110)
T d1q18a1 2 KYALVGDVGGTNARLALCDIASGE 25 (110)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCC
T ss_pred cEEEEEEECchhEEEEEEEcCCCe
Confidence 699999999999999999998876
|
| >d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Transcriptional regulator VC2007 species: Vibrio cholerae [TaxId: 666]
Probab=96.20 E-value=0.0028 Score=51.54 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=27.6
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
++||||||.++++++++|.+|++ +.+.+.++
T Consensus 5 ~~lgi~ig~~~i~~~l~d~~G~i-l~~~~~~~ 35 (128)
T d1z05a3 5 QFLSMRLGRGYLTIALHELGGEV-LIDTKIDI 35 (128)
T ss_dssp EEEEEEEETTEEEEEEEETTSCE-EEEEEEEC
T ss_pred EEEEEEECCCEEEEEEEcCCCCE-EEEEEecc
Confidence 68999999999999999999998 77766655
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.05 E-value=0.0095 Score=47.94 Aligned_cols=93 Identities=14% Similarity=0.226 Sum_probs=58.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEE-EeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIA-CSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~-is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++|.++|.|+ +.||..|.. |...++.++|.+..-.+++ |..... -.+.+.+++
T Consensus 20 ~~~~~lV~F~-~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~v-----------------------d~~~n~~l~ 73 (122)
T d1g7ea_ 20 KSKFVLVKFD-TQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDY-----------------------GDKLNMELS 73 (122)
T ss_dssp GSSEEEEEEE-CSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCT-----------------------TSCHHHHHH
T ss_pred hCCeEEEEEe-cCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeec-----------------------cccccHHHH
Confidence 5689999999 999988864 7788888888754322221 222110 012346788
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHh
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLR--QITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~--~~~~~~~~~~~~~~~il~~l~~ 510 (547)
..|++... .+||.+++. +|+.. ..+.| .+..+.+++.+++
T Consensus 74 ~~~~~~I~----~yPTi~~f~-~G~~~~~~~y~G----~rt~~~l~~fi~~ 115 (122)
T d1g7ea_ 74 EKYKLDKE----SYPVFYLFR-DGDFENPVPYSG----AVKVGAIQRWLKG 115 (122)
T ss_dssp HHHTCSSS----SCEEEEEEE-SSCCCCCEEEES----CCCHHHHHHHHHT
T ss_pred Hhhccccc----CCCeEEEEe-cCcccCceecCC----CCCHHHHHHHHHh
Confidence 88775421 489998884 55433 23323 3467888888764
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.012 Score=50.42 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=61.2
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--Chh---h---------HHHHhhccccC
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--SHF---S---------HLAWCNIPRNK 442 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--~~~---~---------~~~~~~~~~~~ 442 (547)
+..-.-..+++|+.|+ -..||+|....+.+.++.+.. .++++.+... .++ . ..++.+.+...
T Consensus 29 i~~G~~~a~~tv~vF~-D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~ 104 (169)
T d1v58a1 29 LLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEAS 104 (169)
T ss_dssp EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHT
T ss_pred ceeCCCCCCEEEEEEE-CCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHh
Confidence 4444434577888888 999999999999998876543 4666666542 111 1 01111111111
Q ss_pred CCCCCcceeeec--------CCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 443 GGLGDMAIPILS--------DKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 443 ~~~~~~~fp~l~--------D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
....+...+-.. +.+.++++.+|+. .+|+.|+.|++|+++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~------gTPt~i~~~~~g~~~~~~ 155 (169)
T d1v58a1 105 GGKLKLNVPANVSTEQMKVLSDNEKLMDDLGAN------VTPAIYYMSKENTLQQAV 155 (169)
T ss_dssp TTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCC------SSCEEEEEETTTEEEEEE
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhcCCC------CCCEEEEECCCCCEEEec
Confidence 111111111111 2246778888988 589999999999876544
|
| >d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Mlc protein species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0037 Score=50.91 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.6
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
-++||||+|.++++++++|.+|++ +.+.+.++
T Consensus 4 ~~~l~i~i~~~~i~~~l~Dl~G~~-l~~~~~~~ 35 (129)
T d1z6ra2 4 WHYLSLRISRGEIFLALRDLSSKL-VVEESQEL 35 (129)
T ss_dssp CEEEEEEEETTEEEEEEEETTCCE-EEEEEEEC
T ss_pred eEEEEEEECCCEEEEEEEcCCCCE-EEEEEeec
Confidence 368999999999999999999998 88777666
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=94.92 E-value=0.007 Score=55.24 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC---CceEEecchh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG---LQLIVEQDQA 349 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~---~~v~~~~~~~ 349 (547)
...++.++++|.++..+...+.. ...-..+++|++.||+++.++.+++.+.+.+. ..+..++..+
T Consensus 188 ~~~~~a~~~~~~~~~~l~~~~~~-~~~~~~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~ 255 (267)
T d2ewsa1 188 TPSNKLAAVIGVVGEVVTTMAIT-VAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGA 255 (267)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGG
T ss_pred chhhhHHHHHHHHHHHHHHHHHH-HHhhcCCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 67888888889888887776653 12224578999999987789999999988774 3444554443
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.052 Score=45.39 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=31.8
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS 425 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is 425 (547)
+.+..-.+|.+|+.|. -..||+|+...+.+.++.+ .+++++.+.
T Consensus 19 iv~g~~~ak~tIv~Fs-D~~CpyC~~~~~~l~~~~~----~~~~~~~~~ 62 (156)
T d1eeja1 19 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLA 62 (156)
T ss_dssp EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEE
T ss_pred eeecCCCCCEEEEEEe-CCCCHHHHHHHHHHHHhhc----cCceEEEEe
Confidence 3333335688999999 9999999999988887754 356655553
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.012 Score=55.61 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.5
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecc
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSS 31 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~ 31 (547)
+|+|+||||+|++|++++|.++++ +..
T Consensus 1 ~y~L~~DIGGT~ir~glvd~~~~~-i~~ 27 (319)
T d1sz2a1 1 KYALVGDVGGTNARLALCDIASGE-ISQ 27 (319)
T ss_dssp CEEEEEEEETTEEEEEEEETTTCC-EEE
T ss_pred CEEEEEEEChhheeeEEEECCCCE-EEE
Confidence 699999999999999999988776 443
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.11 E-value=0.041 Score=45.79 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=29.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS 425 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is 425 (547)
..|.+|+.|. -..||+|+...+.+.++.+. +.+++.+.
T Consensus 25 ~ak~~I~~Fs-D~~CPyC~~~~~~l~~l~~~----~~~v~~~~ 62 (150)
T d1t3ba1 25 NEKHVVTVFM-DITCHYCHLLHQQLKEYNDL----GITVRYLA 62 (150)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHTTHHHHHHT----TEEEEEEE
T ss_pred CCCEEEEEEE-CCCCHHHHHHhHHHHHHhcc----CceEEEEE
Confidence 5688889999 99999999999988877643 55555554
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=93.52 E-value=0.17 Score=42.30 Aligned_cols=49 Identities=8% Similarity=-0.044 Sum_probs=38.2
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC-cEEEEEeC
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN-TQVIACST 426 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vi~is~ 426 (547)
+.+-+-..++.|+.|+ -..||+|....+.+.++.+++.+.+ +.++-+..
T Consensus 17 ~~~G~~~a~v~I~ef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (172)
T d1z6ma1 17 LHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 66 (172)
T ss_dssp EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CeecCCCCCEEEEEEE-CCCCHhHHHHHHHHhhhhhhhccccceeeeeccc
Confidence 4565555688889999 9999999999999999999998654 45554443
|
| >d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Phenol hydroxylase, C-terminal domain species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=91.37 E-value=2.5 Score=36.14 Aligned_cols=161 Identities=12% Similarity=0.083 Sum_probs=97.2
Q ss_pred hhhhhhccCCCCCCeeeccccCCceeeEeccCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh----------
Q psy224 350 MRDASYALEKPAPEFEGQAVVNGQFKNIKLSQY---KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK---------- 416 (547)
Q Consensus 350 ~~~a~~~~g~~~p~~~l~~~~~G~~~~~~l~~~---~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---------- 416 (547)
..+.+..+|..+|++.+....++ +++.|.+. -|++.|+.|- +.-. +..+...|.++.+.+.+
T Consensus 12 ~lA~~~~iG~R~~sa~V~R~aDa--~p~~L~~~~~adGrfrI~vFa-Gd~~--~~~~~~~l~~la~~L~s~~s~~~r~t~ 86 (201)
T d1pn0a2 12 ELAKNCVVGTRFKSQPVVRHSEG--LWMHFGDRLVTDGRFRIIVFA-GKAT--DATQMSRIKKFAAYLDSENSVISRYTP 86 (201)
T ss_dssp GGBTTSCTTSBCCCCEEEETTTT--EEEEGGGGCCCSSCEEEEEEE-ECTT--SHHHHHHHHHHHHHHHSTTSHHHHHSB
T ss_pred HHhcCCCCceecCCceEEEecCC--CEeehhccccCCCcEEEEEEe-cCCC--ccchhhHHHHHHHHHhcccchhhhccC
Confidence 34445569999999999987788 69998764 5899999997 4322 23444455555554421
Q ss_pred C------CcEEEEEeCCChhhHHHHhhccccCCCCCCccee-ee------cCCChHHHHHhCCcccCCCcceeEEEEEcC
Q psy224 417 I------NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP-IL------SDKSMSIARSYGVLNEETGIPYRGLFIIDD 483 (547)
Q Consensus 417 ~------~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp-~l------~D~~~~~~~~~~v~~~~~g~~~p~~~lid~ 483 (547)
. -++++.|...+..+.+ +.+ ....+......|- +. .+.+......||+..++ =..+|+=|
T Consensus 87 ~~~d~~~~i~~~~V~~~~~~~ie-~~d-lP~~~~~~~~~~~~~~~d~~~~~~~~~~ay~~~GId~~~-----G~vVVVRP 159 (201)
T d1pn0a2 87 KGADRNSRIDVITIHSCHRDDIE-MHD-FPAPALHPKWQYDFIYADCDSWHHPHPKSYQAWGVDETK-----GAVVVVRP 159 (201)
T ss_dssp TTSCTTSSEEEEEEESSCTTSCC-GGG-SCTTTTSCTTCCSSEEECSCCSSSCCCCHHHHHTBCTTT-----CEEEEECT
T ss_pred CCCCCCCcEEEEEEecCCCCccc-ccc-ccccccCCcceEEeeecccccccCCcccHHHHhCCCCCc-----eEEEEECC
Confidence 1 2788888876543322 111 1111111122222 11 23457889999987422 35889999
Q ss_pred CCcEEEEEecCCCCCCCHHHHHHHHHhh--HhhhhcCccccCCccC
Q psy224 484 KQNLRQITINDLPVGRSVDETLRLVQAF--QFVAEHGEVCPAGWKP 527 (547)
Q Consensus 484 ~G~v~~~~~~~~~~~~~~~~il~~l~~l--~~~~~~~~~~~~~w~~ 527 (547)
||-|-..- +.. +.+++-+-+..+ +..++++-..+.+|.+
T Consensus 160 DgyVg~v~--~Ld---d~~~L~~yF~~fl~~~~~~~~~~~~~~~~~ 200 (201)
T d1pn0a2 160 DGYTSLVT--DLE---GTAEIDRYFSGILVEPKEKSGAQTEADWTK 200 (201)
T ss_dssp TSBEEEEE--CTT---THHHHHHHHHTTBCCCSSBCCSCCCCCTTC
T ss_pred CcceEEEE--ccc---cHHHHHHHHHHhhhCccccccccccccccc
Confidence 99998877 333 455555555543 3445567788888853
|
| >d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Hexokinase species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]
Probab=89.98 E-value=0.2 Score=43.58 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=36.0
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.||+||+|+|+.|++++...|+-.....+..+.. | ..-......+++|+-+..+|...
T Consensus 64 ~flalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p-----~~~~~~~~~~~lFd~iA~~i~~f 121 (207)
T d1ig8a1 64 DFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRL--P-----DAMRTTQNPDELWEFIADSLKAF 121 (207)
T ss_dssp EEEEEEECSSEEEEEEEEEESSSCEEEEEEEEEC--C-----TTGGGCSCTHHHHHHHHHHHHHH
T ss_pred eEEEEEecCceEEEEEEEEcCCCceEEeeeeeeC--C-----HHHhcCCcHHHHHHHHHHHHHHH
Confidence 5899999999999999998764313333333321 1 11112345677888777766543
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=87.75 E-value=0.47 Score=40.61 Aligned_cols=59 Identities=7% Similarity=0.152 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh----cC----CcEEEeeCCchhhcHHHHHHHHHHhCCceEEe
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR----SG----INRIIGIGSCLTRNHILQHYIERIYGLQLIVE 345 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~----~g----~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~ 345 (547)
...+++++.++-++-.+++.++. +.. .+ +..|+++||+ |+-+.+.+++++.+++||.+.
T Consensus 94 ~l~~ii~~~~~ei~~~i~~~~~~--~~~~~~~~~~~~~~~~IvLtGGg-s~l~gl~~~l~~~l~~~Vri~ 160 (191)
T d1e4ft2 94 KLSVIIHARLREIMSKSKKFFRE--VEAKIVEEGEIGIPGGVVLTGGG-AKIPRINELATEVFKSPVRTG 160 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHC------CGGGCEEEESGG-GGSTTHHHHHHHHHCSCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hccchhhhcccccCceEEEecch-hhhhhHHHHHHHHHCCCeEEe
Confidence 35678888888888777777763 221 11 2469999998 999999999999999999763
|
| >d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Hexokinase species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]
Probab=87.64 E-value=0.55 Score=40.69 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=34.7
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
-.||+||+|+|+.|+++++..|+- .....+..|++ | ........+++|+-+..+|..
T Consensus 66 G~fLalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~i--p------~~~~~~~~~~lFd~iA~~i~~ 123 (208)
T d1bdga1 66 GNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCI--P------AEKMSGSGTELFKYIAETLAD 123 (208)
T ss_dssp EEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECC--C------TTTTTSBHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCceEEEEEEEecCCCcceEEEEEEeeC--C------HHHccCCHHHHHHHHHHHHHH
Confidence 368999999999999999987531 01122223322 1 112344567788766666644
|
| >d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=87.39 E-value=0.58 Score=37.02 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=39.5
Q ss_pred EEEEEeCCceeEEEEEecCCCe--eecccccccccCCCCcCCCCCCc-cccCHHHHHHHHHHHHhhCCchhhhhhcee
Q psy224 6 VLGIDIGTTSVKVCLIDANTRE--ELSSESKDTQANIPSAHDSNPGA-HEQNVRKIVSTLHNCILRLPKDHLKQVKHI 80 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~--~l~~~~~~~~~~~p~~~~~~~g~-~e~d~~~~~~~~~~~i~~~d~r~~~~~~~i 80 (547)
|.+||+||.|+|..+++.+++. .+...+.+.... . .....|. .+...+..++++.....-++......+..+
T Consensus 2 ~A~IDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg--~-~~~~~g~l~~~~i~~~~~~l~~f~~~~~~~~v~~i~~v 76 (124)
T d1u6za2 2 FAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLA--D-GLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIV 76 (124)
T ss_dssp EEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTG--G-GBCTTCCBCHHHHHHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEEEEccceEEEEEEEecCCCeeEeeeeeEEeehh--h-hccccCCcCHHHHHHHHHHHHHHHHHHHhcCcceehhh
Confidence 6789999999999999865432 133333333221 1 1112222 233345566677666666655544444433
|
| >d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Glucokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.49 E-value=0.65 Score=40.19 Aligned_cols=58 Identities=19% Similarity=0.364 Sum_probs=35.2
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe----eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE----ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~----~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
-.||+||+|+|+.|+++++..+.. .+...+..+++ | ........+++++-+..+|...
T Consensus 59 G~flalDlGGTn~Rv~~V~L~~~~~~~~~~~~~~~~~~i--p------~~~~~~t~~~LFd~iA~~i~~f 120 (205)
T d1v4sa1 59 GDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSI--P------EDAMTGTAEMLFDYISECISDF 120 (205)
T ss_dssp EEEEEEEESSSEEEEEEEEECCCSSSCCEEEEEEEEEEC--C------STTTSSBHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCceEEEEEEEeCCCCCCCceeEEEeecccC--C------hhhccCCHHHHHHHHHHHHHHH
Confidence 367999999999999999974332 11112223322 1 1123456677887777776544
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.86 E-value=0.71 Score=40.23 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHH-HH---Hh---CCceEEecchhhhh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYI-ER---IY---GLQLIVEQDQAMRD 352 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~-Ad---~l---~~~v~~~~~~~~~~ 352 (547)
.+++|+.+++++.++..+-+.... ..+..++++|+++||- +.|..+++.+ +. .+ +..+..++..+...
T Consensus 128 ~~~~DiaaS~q~~v~~~l~~~a~~-aa~~~~~k~iv~~Ggv-~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~g 202 (212)
T d2i7na2 128 ISKEDLARATLVTITNNIGSIARM-CALNENIDRVVFVGNF-LRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFG 202 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCCCEEEESGG-GCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEECcH-hhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhH
Confidence 378999999999999999887764 4556789999999995 7776665543 32 22 56777777666544
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=84.67 E-value=0.78 Score=39.41 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=29.5
Q ss_pred CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 314 INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 314 ~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
++.|.++||+ ++.+.+.+.+.+.++.++....++
T Consensus 149 Id~v~lvGG~-sr~p~l~~~i~~~f~~~~~~~~~p 182 (198)
T d1dkgd2 149 IDDVILVGGQ-TRMPMVQKKVAEFFGKEPRKDVNP 182 (198)
T ss_dssp CCEEEEESGG-GGSHHHHHHHHHHHSSCCBCSSCT
T ss_pred CcEEEEEcCc-cCCHHHHHHHHHHHCCCCCCCCCh
Confidence 7899999997 999999999999999887665444
|
| >d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Mammalian type I hexokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.89 E-value=0.53 Score=40.71 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=35.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
-.||+||+|+|+.|+++++..|.- .+...+..+++ | ........+++++-+..+|...
T Consensus 61 G~fLalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~~i--p------~~~~~~~~~eLFd~iA~~i~~f 120 (205)
T d1czan3 61 GDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAI--P------IEIMQGTGEELFDHIVSCISDF 120 (205)
T ss_dssp EEEEEEEESSSSEEEEEEEEECSTTCEEEEEEEEECC--C------HHHHTSBHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCceEEEEEEEecCCCCceEEEEeeeecC--C------HHHhcCCHHHHHHHHHHHHHHH
Confidence 368999999999999999875431 12222333321 1 1122345577887777776543
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=82.83 E-value=0.54 Score=39.88 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhc---C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRS---G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~---g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
...++...+++-+...++..++. .... . .+.|+++||+ |+-+.+.+++.+.+++|+.+..++..
T Consensus 105 ~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~IvLvGGs-S~ip~v~~~l~~~fg~~v~~~~~P~~ 173 (196)
T d1jcea2 105 EVREALRSVVVAIVESVRTTLEK--TPPELVSDIIERGIFLTGGG-SLLRGLDTLLQKETGISVIRSEEPLT 173 (196)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHT--SCHHHHHHHHHHCEEEESGG-GCSBTHHHHHHHHHSSCEEECSSTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--hhccccccccccceEEeCch-hcchhHHHHHHHHHCcCCccCCChHH
Confidence 35566667777777777666652 2221 1 3469999997 99999999999999999999876643
|
| >d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.39 E-value=1.4 Score=38.84 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=40.5
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+.+.|||||||++++++...+.+- +++....+..= -. | .-.|.+...++++.++...
T Consensus 1 pii~glDIGtski~~~v~~~~~~~~~ilg~g~~~s~G-------iK-G-~I~ni~~~~~aI~~av~~A 59 (239)
T d1nbwa2 1 PLIAGIDIGNATTEVALASDYPQARAFVASGIVATTG-------MK-G-TRDNIAGTLAALEQALAKT 59 (239)
T ss_dssp CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCS-------ST-T-SGGGHHHHHHHHHHHHTTS
T ss_pred CEEEEEEcCCCeEEEEEEEEcCCCEEEEEEEeecCCC-------Cc-c-eEECHHHHHHHHHHHHHHh
Confidence 468999999999999999754332 35555544411 12 3 5678999999999998765
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=80.83 E-value=1.1 Score=38.19 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=42.7
Q ss_pred ceEEEEEeCCceeEEEEEec-CCCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCchhh
Q psy224 4 QVVLGIDIGTTSVKVCLIDA-NTRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKDHL 74 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~-~g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r~~ 74 (547)
.|+.+||+||+++|+++... +++. +++....+..- -..| .-.|.+..-+++.++|......+.
T Consensus 2 ~~~~aiDIGs~kI~~~v~~~~~~~~~iig~~~~~s~G-------i~~G-~I~d~~~~~~~I~~~I~~aE~~a~ 66 (193)
T d1e4ft1 2 VFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG-------LDEG-EIKDAIAFKESVNTLLKELEEQLQ 66 (193)
T ss_dssp EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCS-------EETT-EESCHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEcCCCEEEEEEEEEcCCcEEEEEEEEEecCC-------ccCC-eEEeHHHHHHHHHHHHHHHHHHcC
Confidence 47899999999999998864 4442 25555444310 1222 457899999999998877655443
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.69 E-value=0.43 Score=40.60 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.7
Q ss_pred EEEEEeCCceeEEEEEecCCCe
Q psy224 6 VLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
++|||+|||++++++++. |+.
T Consensus 3 vvGIDfGTt~s~va~~~~-g~~ 23 (185)
T d1bupa1 3 AVGIDLGSTYSCVGVFQH-GKV 23 (185)
T ss_dssp CEEEEECSSEEEEEEEET-TEE
T ss_pred EEEEEcChhcEEEEEEEC-CEE
Confidence 689999999999999874 543
|
| >d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Mammalian type I hexokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.40 E-value=0.54 Score=40.78 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=34.9
Q ss_pred ceEEEEEeCCceeEEEEEecCCC--eeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTR--EELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~--~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
-.||+||+|+|+.|++++...|+ ..+...+..+++ | ........+++++-|..+|..
T Consensus 63 G~flalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~~i--p------~~~~~~~~~~lFd~IA~~i~~ 121 (207)
T d1czan1 63 GDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDT--P------ENIVHGSGSQLFDHVAECLGD 121 (207)
T ss_dssp EEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECC--C------HHHHSSBHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCceEEEEEEEeCCCCCccEEEEEEeecC--C------HHHhcCCHHHHHHHHHHHHHH
Confidence 36899999999999999987542 112223233321 1 112344567788777777654
|