Psyllid ID: psy2302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWGEYHYQVQGSNS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHccEEEEcccccHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHccccccccccEEEEccccHHHHHHHHHHHHHccccEEEccEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccHHHHHHcccHHHHHHHHccccccccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccHHHHHccEEEEEEcccccHHHHHHHHHccccEEEEEEcccEEHHHHcHEEEcccHcccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHccccEEEHEEEcccccEEEEEEccccccccccccccccccccccHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHcccccccEEEEHHHHccccEEEcccccccccHHccccHHHHHHcccHHHHHHccccccccccccccccHHHEEccccc
Coil and Loop (DISEMBL)
MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTrcgigklilfdyDKVELANMnrlffqpdqcglsKVEAARITlqninpdvtiEVHNFNITLLRKVGALAVqgsltegpvdlVLSCVDNFEARMTINMACNQLGQTWFEsgvsenavsghiqliipgesacfacapplivassidektlkkdgvcaaslpttmGIVAGFLVQNALKKLLKFGEVSWYLGYsaltdffpkmklkpnpscddsycvqrqkefnarpvevkleaakpeaqvvhadndwgeyhyqvqgsns
Flexible Loop (DISEMBL)
MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGsltegpvdLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWGEYHYQVQGSNS
Low Complexity Region (SEG)
MALKRMGIVENYEHIRTLTvivvgvggvgsvTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWGEYHYQVQGSNS
Disordered region (IsUnstruct)
*****MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQ**F****************QVVHADNDWGEYHY*******
Disordered Region (DISOPRED)
MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQKEF**********************NDWGEYH*QV*****
Disordered Region (DISEMBL)
MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWGEYH********
Disordered Region (DISPRO)
MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQKEFNARPVEVKLE****EAQVVHADNDWGEYHYQVQG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWGEYHYQVQGSNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
A7MAZ3	404	Ubiquitin-like modifier-a	yes	N/A	0.962	0.695	0.720	1e-114
Q3KQ23	397	Ubiquitin-like modifier-a	N/A	N/A	0.941	0.692	0.726	1e-111
Q29HT0	397	Ubiquitin-like modifier-a	yes	N/A	0.962	0.707	0.712	1e-111
B9VJ80	393	Ubiquitin-like modifier-a	N/A	N/A	0.958	0.712	0.733	1e-111
Q5R8X4	404	Ubiquitin-like modifier-a	yes	N/A	0.962	0.695	0.706	1e-111
Q5M7A4	403	Ubiquitin-like modifier-a	yes	N/A	0.962	0.697	0.710	1e-111
B4PYA4	403	Ubiquitin-like modifier-a	N/A	N/A	0.962	0.697	0.708	1e-110
Q6GLG7	399	Ubiquitin-like modifier-a	yes	N/A	0.941	0.689	0.709	1e-110
B4IK21	404	Ubiquitin-like modifier-a	N/A	N/A	0.962	0.695	0.705	1e-110
Q6IVA4	397	Ubiquitin-like modifier-a	yes	N/A	0.941	0.692	0.702	1e-110

>sp|A7MAZ3|UBA5_BOVIN Ubiquitin-like modifier-activating enzyme 5 OS=Bos taurus GN=UBA5 PE=2 SV=1

 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/286 (72%), Positives = 235/286 (82%), Gaps = 5/286 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV +YE IRT TV +VGVGGVGSVTAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct: 57  MALKRMGIVSDYEKIRTFTVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 116

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
           FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct: 117 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMNRISNGGLEEGKPVD 176

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct: 177 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 236

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
           ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct: 237 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 296

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEV-KLEAAKPEAQVVHADNDWG 281
           +KPNP CDD  C ++QKE+  +   + K E  + E +++H DN+WG
Sbjct: 297 MKPNPQCDDRNCRKQQKEYKKKVAALPKQEVIQEEGEIIHEDNEWG 342

E1-like enzyme which activates UFM1 and SUMO2.
Bos taurus (taxid: 9913)

>sp|Q3KQ23|UBA5_XENLA Ubiquitin-like modifier-activating enzyme 5 OS=Xenopus laevis GN=uba5 PE=2 SV=1

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/293 (72%), Positives = 235/293 (80%), Gaps = 18/293 (6%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIVENYE IRT TV VVGVGGVGSVTAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct: 51  MALKRMGIVENYEKIRTFTVAVVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 110

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALA---VQGSLTEG-PVD 116
           FFQP Q GLSKVEAA  TL+NINPDV  EVHN+NIT L           +G L EG PVD
Sbjct: 111 FFQPHQAGLSKVEAAEHTLRNINPDVQFEVHNYNITTLDNFQHFMDRISKGGLKEGSPVD 170

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARM IN ACN+LGQ W ESGVSENAVSGHIQLI PGE+ACFACAPPL+VA
Sbjct: 171 LVLSCVDNFEARMAINTACNELGQVWMESGVSENAVSGHIQLIKPGETACFACAPPLVVA 230

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
           ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct: 231 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKYLLNFGTVSFYLGYNAMQDFFPTMA 290

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPE--------AQVVHADNDWG 281
           +KPNP CDD YC ++Q+EF  +      EAAKP+         +VVH DNDWG
Sbjct: 291 MKPNPQCDDKYCRKQQEEFKLK------EAAKPKQETVVVEEEEVVHEDNDWG 337

E1-like enzyme which activates ufm1 and sumo2.

Xenopus laevis (taxid: 8355)

>sp|Q29HT0|UBA5_DROPS Ubiquitin-like modifier-activating enzyme 5 OS=Drosophila pseudoobscura pseudoobscura GN=GA14526 PE=3 SV=1

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/285 (71%), Positives = 227/285 (79%), Gaps = 4/285 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MAL+RM IV+NYE IR  TV +VGVGGVGSVTA+MLTRCGIGKLILFDYDKVELANMNRL
Sbjct: 50  MALQRMNIVKNYERIRDKTVAIVGVGGVGSVTADMLTRCGIGKLILFDYDKVELANMNRL 109

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRK----VGALAVQGSLTEGPVD 116
           FF PDQ GLSKVEAA  TL  INPDV IE HN+NIT +      +  +   G++   PVD
Sbjct: 110 FFTPDQAGLSKVEAAARTLTFINPDVRIETHNYNITTIDNFDNFLSTITGDGTVAGEPVD 169

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARM IN ACN+    WFESGVSENAVSGHIQ + PG++ACFACAPPL+VA
Sbjct: 170 LVLSCVDNFEARMAINAACNEKCLNWFESGVSENAVSGHIQFLRPGDTACFACAPPLVVA 229

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
            +IDEKTLK++GVCAASLPTTMGI AGFLVQNALK LL FGEVS YLGY+AL DFFPKM 
Sbjct: 230 ENIDEKTLKREGVCAASLPTTMGITAGFLVQNALKYLLNFGEVSDYLGYNALNDFFPKMT 289

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWG 281
           LKPNP CDD  C+ RQKEF ARP  V ++   P  + +HA NDWG
Sbjct: 290 LKPNPQCDDRNCLLRQKEFQARPKPVVVQEEAPTDEPLHASNDWG 334

E1-like enzyme which activates UFM1.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B9VJ80|UBA5_BOMMO Ubiquitin-like modifier-activating enzyme 5 OS=Bombyx mori PE=2 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/285 (73%), Positives = 235/285 (82%), Gaps = 5/285 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV NYE IR  TV VVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL
Sbjct: 49  MALKRMGIVNNYEQIREKTVAVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 108

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL---RKVGALAVQGSLTEGPVDL 117
           FFQP Q GLSKV+AA  TLQNINPDVTI+ +N+NIT +   +K      +GSLT G VDL
Sbjct: 109 FFQPHQAGLSKVDAAAATLQNINPDVTIDAYNYNITTVDNFQKFCDTISKGSLTGGAVDL 168

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VLSCVDNFEARM IN ACN+L Q WFESGVSENAVSGHIQ I PGESACFACAPPL+VA+
Sbjct: 169 VLSCVDNFEARMAINTACNELDQKWFESGVSENAVSGHIQFISPGESACFACAPPLVVAT 228

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL 237
            +DE+TLK++GVCAASLPTTMGIVAGFLVQN+LK LL+FG V+ YLGYSALTDFFP M L
Sbjct: 229 KVDERTLKREGVCAASLPTTMGIVAGFLVQNSLKYLLEFGNVTHYLGYSALTDFFPTMSL 288

Query: 238 KPNPSCDDSYCVQRQKEFNARP-VEVKLEAAKPEAQVVHADNDWG 281
           +PNP+CDD+ C  RQ++   +P VE+  E  + +   VH DNDWG
Sbjct: 289 QPNPTCDDASCRARQEQRRLQPRVELAAEVTE-DCGPVHQDNDWG 332

E1-like enzyme which activates UFM1.

Bombyx mori (taxid: 7091)

>sp|Q5R8X4|UBA5_PONAB Ubiquitin-like modifier-activating enzyme 5 OS=Pongo abelii GN=UBA5 PE=2 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/286 (70%), Positives = 234/286 (81%), Gaps = 5/286 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV +YE IRT  V +VGVGGVGSVTAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct: 57  MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 116

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
           FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct: 117 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 176

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct: 177 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 236

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
           ++IDEK+LK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct: 237 ANIDEKSLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 296

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEV-KLEAAKPEAQVVHADNDWG 281
           +KPNP CDD  C ++Q+E+  +   + K E  + + +++H DN+WG
Sbjct: 297 MKPNPQCDDRNCRKQQEEYKKKVAALPKQEVIQEKEEIIHEDNEWG 342

E1-like enzyme which activates UFM1 and SUMO2.

Pongo abelii (taxid: 9601)

>sp|Q5M7A4|UBA5_RAT Ubiquitin-like modifier-activating enzyme 5 OS=Rattus norvegicus GN=Uba5 PE=2 SV=1

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/287 (71%), Positives = 235/287 (81%), Gaps = 6/287 (2%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMG+V +YE IRT  V +VGVGGVGSVTAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct: 55  MALKRMGVVSDYEKIRTYAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 114

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
           FFQP Q G+SKV+AA  TL++INPDV  EVHN+NIT +        +   G L EG PVD
Sbjct: 115 FFQPYQAGMSKVQAAEHTLRSINPDVLFEVHNYNITTVEHFEHFMNRISNGGLEEGQPVD 174

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARM IN ACN+LGQTW ESGVSENAVSGHIQL++PGESACFACAPPL+VA
Sbjct: 175 LVLSCVDNFEARMAINTACNELGQTWMESGVSENAVSGHIQLMVPGESACFACAPPLVVA 234

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
           S+IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LLKFG VS+YLGY+A+ DFFP M 
Sbjct: 235 SNIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLKFGTVSFYLGYNAMQDFFPTMF 294

Query: 237 LKPNPSCDDSYCVQRQKEFNAR-PVEVKLEAA-KPEAQVVHADNDWG 281
           +KPNP CDD  C ++Q+E+  R P +   E A + E +VVH DN+WG
Sbjct: 295 MKPNPQCDDKNCRKQQEEYKKRAPAQPTQETAPQEEEEVVHEDNEWG 341

E1-like enzyme which activates UFM1 and SUMO2.

Rattus norvegicus (taxid: 10116)

>sp|B4PYA4|UBA5_DROYA Ubiquitin-like modifier-activating enzyme 5 OS=Drosophila yakuba GN=GE15940 PE=3 SV=1

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 227/285 (79%), Gaps = 4/285 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MAL+RM IV++YE IR   V +VGVGGVGSVTA+MLTRCGIGKLILFDYDKVELANMNRL
Sbjct: 56  MALQRMNIVKDYERIRDKAVAIVGVGGVGSVTADMLTRCGIGKLILFDYDKVELANMNRL 115

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL----RKVGALAVQGSLTEGPVD 116
           FF PDQ GLSKVEAA  TL  INPDV IE HN+NIT +    R +  ++  G +   PVD
Sbjct: 116 FFTPDQAGLSKVEAAAATLSFINPDVEIETHNYNITTVENFDRFLDTISQGGRIAGQPVD 175

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARM IN ACN+    WFESGVSENAVSGHIQ I PG++ACFACAPPL+VA
Sbjct: 176 LVLSCVDNFEARMAINAACNERNLNWFESGVSENAVSGHIQFIRPGDTACFACAPPLVVA 235

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
            +IDEKTLK++GVCAASLPTTMGI AGFLVQNALK LL FGEVS YLGY+AL+DFFPKM 
Sbjct: 236 ENIDEKTLKREGVCAASLPTTMGITAGFLVQNALKYLLNFGEVSDYLGYNALSDFFPKMT 295

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWG 281
           LKPNP CDD  C+ RQKEF ARP  V +E      + +HA N+WG
Sbjct: 296 LKPNPQCDDRNCIVRQKEFQARPKPVVIEEKAVSEEPLHATNEWG 340

E1-like enzyme which activates UFM1.

Drosophila yakuba (taxid: 7245)

>sp|Q6GLG7|UBA5_XENTR Ubiquitin-like modifier-activating enzyme 5 OS=Xenopus tropicalis GN=uba5 PE=2 SV=1

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/293 (70%), Positives = 233/293 (79%), Gaps = 18/293 (6%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIVE+YE IRT TV VVGVGGVGSVTAEMLTRCGIGKL+LFDYDKVE+ANMNRL
Sbjct: 53  MALKRMGIVEDYEKIRTFTVAVVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVEMANMNRL 112

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALA---VQGSLTEG-PVD 116
           FFQP Q GLSKVEAA  TL+NINPDV  EVHN+NIT L           +G L EG PVD
Sbjct: 113 FFQPHQAGLSKVEAAEHTLRNINPDVQFEVHNYNITTLDNFQHFMDRISKGGLKEGTPVD 172

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARM IN ACN+L Q W ESGVSENAVSGHIQLI PGE+ACFACAPPL+VA
Sbjct: 173 LVLSCVDNFEARMAINTACNELVQIWMESGVSENAVSGHIQLIKPGETACFACAPPLVVA 232

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
           ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct: 233 ANIDEKTLKREGVCAASLPTTMGVVAGMLVQNVLKYLLNFGTVSFYLGYNAMQDFFPTMA 292

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKP--------EAQVVHADNDWG 281
           +KPNP C D YC ++Q+EF  +      EAA+P        E ++VH DNDWG
Sbjct: 293 MKPNPQCGDKYCRKQQEEFKLK------EAARPKQEPIVVKEEEIVHEDNDWG 339

E1-like enzyme which activates ufm1 and sumo2.

Xenopus tropicalis (taxid: 8364)

>sp|B4IK21|UBA5_DROSE Ubiquitin-like modifier-activating enzyme 5 OS=Drosophila sechellia GN=GM13085 PE=3 SV=1

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/285 (70%), Positives = 226/285 (79%), Gaps = 4/285 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MAL+RM IV++YE IR   V +VGVGGVGSVTA+MLTRCGIGKLILFDYDKVELANMNRL
Sbjct: 57  MALQRMNIVKDYERIRDKAVAIVGVGGVGSVTADMLTRCGIGKLILFDYDKVELANMNRL 116

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL----RKVGALAVQGSLTEGPVD 116
           FF PDQ GLSKV AA  TL  INPDV IE HN+NIT +    R +  ++  G +   PVD
Sbjct: 117 FFTPDQAGLSKVAAAAATLSFINPDVEIETHNYNITTVENFDRFLDTISQGGRIAGQPVD 176

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARM IN ACN+    WFESGVSENAVSGHIQ I PG++ACFACAPPL+VA
Sbjct: 177 LVLSCVDNFEARMAINAACNERNLNWFESGVSENAVSGHIQFIRPGDTACFACAPPLVVA 236

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
            +IDEKTLK++GVCAASLPTTMGI AGFLVQNALK LL FGEVS YLGY+AL+DFFPKM 
Sbjct: 237 ENIDEKTLKREGVCAASLPTTMGITAGFLVQNALKYLLNFGEVSDYLGYNALSDFFPKMT 296

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWG 281
           LKPNP CDD  C+ RQKEF ARP  V +E      + +HA N+WG
Sbjct: 297 LKPNPQCDDRNCIVRQKEFQARPKPVVIEEKAVSEEPLHATNEWG 341

E1-like enzyme which activates UFM1.

Drosophila sechellia (taxid: 7238)

>sp|Q6IVA4|UBA5_CHICK Ubiquitin-like modifier-activating enzyme 5 OS=Gallus gallus GN=UBA5 PE=2 SV=1

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/292 (70%), Positives = 234/292 (80%), Gaps = 17/292 (5%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV++YE IRT TV +VGVGGVGSVTAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct: 50  MALKRMGIVKDYEKIRTFTVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 109

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
           FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT L        +   G+L EG PVD
Sbjct: 110 FFQPHQAGLSKVQAAEHTLRNINPDVQFEVHNYNITTLDNFEHFMDRISNGALEEGKPVD 169

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARM IN ACN+LGQ W ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct: 170 LVLSCVDNFEARMAINTACNELGQIWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 229

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
           ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct: 230 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKYLLNFGTVSYYLGYNAMQDFFPTMA 289

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPE-------AQVVHADNDWG 281
           +KPNP C D  C ++Q+ +  +      EAA+P+        ++VH DNDWG
Sbjct: 290 MKPNPQCSDQNCRKQQENYKIK------EAAQPKQEEIHQEEEIVHEDNDWG 335

E1-like enzyme which activates UFM1 and SUMO2.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
307169931	394	Ubiquitin-like modifier-activating enzym	0.962	0.713	0.725	1e-121
332022989	394	Ubiquitin-like modifier-activating enzym	0.958	0.710	0.732	1e-118
348582021	403	PREDICTED: ubiquitin-like modifier-activ	0.962	0.697	0.713	1e-117
350412592	371	PREDICTED: ubiquitin-like modifier-activ	0.958	0.754	0.715	1e-117
340720752	371	PREDICTED: ubiquitin-like modifier-activ	0.958	0.754	0.712	1e-115
357627749	389	ubiquitin-like modifier-activating enzym	0.958	0.719	0.750	1e-114
383847174	391	PREDICTED: ubiquitin-like modifier-activ	0.958	0.716	0.719	1e-114
91094899	385	PREDICTED: similar to GA14526-PA [Tribol	0.948	0.719	0.736	1e-114
290462395	391	Ubiquitin-like modifier-activating enzym	0.962	0.718	0.700	1e-114
346466799	441	hypothetical protein [Amblyomma maculatu	0.941	0.623	0.691	1e-112

>gi|307169931|gb|EFN62440.1| Ubiquitin-like modifier-activating enzyme 5 [Camponotus floridanus]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/284 (72%), Positives = 233/284 (82%), Gaps = 3/284 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV+NYE IR LT+ +VG+GGVGSVTAEMLTRCGIGKL+LFDYD VELANMNRL
Sbjct: 50  MALKRMGIVDNYEKIRELTIAIVGIGGVGSVTAEMLTRCGIGKLVLFDYDNVELANMNRL 109

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALA---VQGSLTEGPVDL 117
           FFQP Q G SKVEAA  TL+ INPDV IE+HN+NIT +             SL  GPVDL
Sbjct: 110 FFQPHQAGQSKVEAAASTLRYINPDVEIEIHNYNITTIDHFSDFMNTISTSSLENGPVDL 169

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VLSCVDNFEARM IN ACN+L Q WFESGVSENAVSGHIQ I+PGE+ACFACAPPLIVAS
Sbjct: 170 VLSCVDNFEARMAINTACNELNQKWFESGVSENAVSGHIQFIVPGETACFACAPPLIVAS 229

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL 237
           SIDEKTLK++GVCAASLPTTMGIVAGFLVQN LK LLKFG+VS+YLGY+A+ DFFPKM L
Sbjct: 230 SIDEKTLKREGVCAASLPTTMGIVAGFLVQNTLKFLLKFGQVSYYLGYNAMEDFFPKMTL 289

Query: 238 KPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWG 281
           KPNP+CDD++C QRQKE+  +P   +  +   E + +H DN WG
Sbjct: 290 KPNPNCDDAHCKQRQKEYAQKPKSQQRSSKIIEEKAIHEDNKWG 333

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022989|gb|EGI63254.1| Ubiquitin-like modifier-activating enzyme 5 [Acromyrmex echinatior]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/284 (73%), Positives = 232/284 (81%), Gaps = 4/284 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGI+ENYE IR LT+ +VG+GGVGSVTAEMLTRCGIGKLILFDYD VELANMNRL
Sbjct: 51  MALKRMGIIENYEKIRELTIAIVGIGGVGSVTAEMLTRCGIGKLILFDYDSVELANMNRL 110

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALA---VQGSLTEGPVDL 117
           FFQP Q G SKVEAA  TL  INPDV IE+HN+NIT +             SL  GPVDL
Sbjct: 111 FFQPYQTGQSKVEAAANTLLYINPDVEIEIHNYNITTVNHFQNFMNTISNSSLKNGPVDL 170

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VLSCVDNFEARM IN ACN+L Q WFESGVSENAVSGHIQ I+PGE+ACFACAPPLIVAS
Sbjct: 171 VLSCVDNFEARMAINTACNELNQKWFESGVSENAVSGHIQFIVPGETACFACAPPLIVAS 230

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL 237
           SIDEKTLK++GVCAASLPTTMGIVAGFLVQN LK LLKFG++S YLGY+A+ DFFP M L
Sbjct: 231 SIDEKTLKREGVCAASLPTTMGIVAGFLVQNTLKFLLKFGKISHYLGYNAMEDFFPTMTL 290

Query: 238 KPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWG 281
           +PNP+CDD YC QRQKE+ A+P   + + A  E + VH DN+WG
Sbjct: 291 RPNPNCDDKYCKQRQKEYLAKPKIQQNQTAIIE-KPVHEDNEWG 333

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348582021|ref|XP_003476775.1| PREDICTED: ubiquitin-like modifier-activating enzyme 5-like [Cavia porcellus]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/286 (71%), Positives = 234/286 (81%), Gaps = 5/286 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV +YE IRT  V ++GVGGVGSVTAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct: 57  MALKRMGIVSDYEKIRTFAVAIIGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 116

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
           FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct: 117 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISTGGLEEGKPVD 176

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARM IN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct: 177 LVLSCVDNFEARMAINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 236

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
           + IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct: 237 AKIDEKTLKREGVCAASLPTTMGVVAGMLVQNVLKFLLHFGTVSFYLGYNAMQDFFPTMS 296

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEV-KLEAAKPEAQVVHADNDWG 281
           +KPNP C+D  C ++Q+E+  + V + K EAA+ E  ++H DN+WG
Sbjct: 297 MKPNPQCEDRNCRKQQEEYQKKVVALPKQEAAQEEDAIIHEDNEWG 342

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350412592|ref|XP_003489698.1| PREDICTED: ubiquitin-like modifier-activating enzyme 5-like [Bombus impatiens]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/285 (71%), Positives = 233/285 (81%), Gaps = 5/285 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV NYE I+ LT+ +VG+GGVGSVTAEMLTRCGIGKLILFDYDKVE+ANMNRL
Sbjct: 50  MALKRMGIVNNYERIKELTIAIVGIGGVGSVTAEMLTRCGIGKLILFDYDKVEMANMNRL 109

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL---RKVGALAVQGSLTEGPVDL 117
           FFQP Q G +KVEAA  TLQ INPDV IE +N+NIT +        +    SL EGPVDL
Sbjct: 110 FFQPYQAGQNKVEAAATTLQYINPDVEIETYNYNITTMDHFEDFTNIISTASLNEGPVDL 169

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VLSCVDNFEARM IN ACN+L Q WFESGVSENAVSGHIQ IIPGE+ACFACAPPL+VA 
Sbjct: 170 VLSCVDNFEARMAINTACNELNQKWFESGVSENAVSGHIQFIIPGETACFACAPPLVVAE 229

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL 237
           +IDEKTLK+DGVCAASLPTTMGIVAGFLVQNALK LL FG+V++YLGY+A+ DFFPKM L
Sbjct: 230 NIDEKTLKRDGVCAASLPTTMGIVAGFLVQNALKYLLNFGDVTYYLGYNAMEDFFPKMIL 289

Query: 238 KPNPSCDDSYCVQRQKEFNARPV-EVKLEAAKPEAQVVHADNDWG 281
           KPNP+C+D YC + Q E+  +P  E K+E    E + +H DN+WG
Sbjct: 290 KPNPNCEDRYCRKHQLEYALKPKPEQKIEKT-VEDKPLHEDNEWG 333

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720752|ref|XP_003398795.1| PREDICTED: ubiquitin-like modifier-activating enzyme 5-like [Bombus terrestris]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/285 (71%), Positives = 232/285 (81%), Gaps = 5/285 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV NYE I+ LT+ +VG+GGVGSVTAEMLTRCGIGKLILFDYDKVE+ANMNRL
Sbjct: 50  MALKRMGIVNNYERIKELTIAIVGIGGVGSVTAEMLTRCGIGKLILFDYDKVEMANMNRL 109

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL---RKVGALAVQGSLTEGPVDL 117
           FFQP Q G +KVEAA  TLQ INPDV IE +N+NIT +        +    SL +GPVDL
Sbjct: 110 FFQPYQAGQNKVEAAATTLQYINPDVEIETYNYNITTMDHFEDFTNIIRTASLNKGPVDL 169

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VLSCVDNFEARM IN ACN+L Q WFESGVSENAVSGHIQ IIPGE+ACFACAPPL+VA 
Sbjct: 170 VLSCVDNFEARMAINTACNELNQKWFESGVSENAVSGHIQFIIPGETACFACAPPLVVAE 229

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL 237
           +IDEKTLK+DGVCAASLPTTMGIVAGFLVQNALK LL FG+V+ YLGY+A+ DFFPKM L
Sbjct: 230 NIDEKTLKRDGVCAASLPTTMGIVAGFLVQNALKYLLNFGDVTHYLGYNAMQDFFPKMML 289

Query: 238 KPNPSCDDSYCVQRQKEFNARPV-EVKLEAAKPEAQVVHADNDWG 281
           KPNP+C+D YC + Q E+  +P  E K+E    E + +H DN+WG
Sbjct: 290 KPNPNCEDRYCRKHQLEYALKPKPEQKIEKI-VEDKPLHEDNEWG 333

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627749|gb|EHJ77335.1| ubiquitin-like modifier-activating enzyme 5 [Danaus plexippus]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/285 (75%), Positives = 238/285 (83%), Gaps = 5/285 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV NYE IR ++V VVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL
Sbjct: 49  MALKRMGIVNNYEKIREMSVAVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 108

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALA---VQGSLTEGPVDL 117
           FFQP Q GLSKV+AA  TL+ INPDVTI+ +N+NIT +            GSLTEGPVDL
Sbjct: 109 FFQPHQAGLSKVDAASATLRAINPDVTIDAYNYNITTVDNFQNFCDTIRTGSLTEGPVDL 168

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VLSCVDNFEARM INMACN+L Q WFESGVSENAVSGHIQ IIPGE+ACFACAPPL+VAS
Sbjct: 169 VLSCVDNFEARMAINMACNELNQKWFESGVSENAVSGHIQFIIPGETACFACAPPLVVAS 228

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL 237
           +IDEKTLK+DGVCAASLPTTMGIVAGFLVQN LK LL FG VS YLGYSA+TD+FP+M L
Sbjct: 229 NIDEKTLKRDGVCAASLPTTMGIVAGFLVQNTLKYLLSFGNVSHYLGYSAMTDYFPRMSL 288

Query: 238 KPNPSCDDSYCVQRQKEFNARP-VEVKLEAAKPEAQVVHADNDWG 281
           KPN  CDDS+C QRQ E+++RP VE+  E  +  A  +H DN+WG
Sbjct: 289 KPNLQCDDSFCRQRQSEYSSRPAVELATEVTEDPAP-LHEDNEWG 332

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847174|ref|XP_003699230.1| PREDICTED: ubiquitin-like modifier-activating enzyme 5-like [Megachile rotundata]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/285 (71%), Positives = 235/285 (82%), Gaps = 5/285 (1%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV NYE IR  T+ +VGVGGVGSVTAEMLTRCGIGKL+LFDYDKVE+ANMNRL
Sbjct: 50  MALKRMGIVNNYERIREFTIAIVGVGGVGSVTAEMLTRCGIGKLVLFDYDKVEMANMNRL 109

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRK----VGALAVQGSLTEGPVD 116
           FFQP Q G SKVEAA  TLQ INPDV IE HN+NIT +      +  L+   SL++GPV+
Sbjct: 110 FFQPHQAGQSKVEAAAKTLQYINPDVDIETHNYNITTVDHFEDFMNTLST-SSLSKGPVE 168

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARM IN ACN+L Q WFESGVSENAVSGHIQ IIPGE+ACFACAPPL+VA
Sbjct: 169 LVLSCVDNFEARMAINTACNELNQKWFESGVSENAVSGHIQFIIPGETACFACAPPLVVA 228

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
            +IDEKTLK+DGVCAASLPTTMGIVAGFLVQN LK LL FGEVS+YLGY+A+ DFFPKM 
Sbjct: 229 ENIDEKTLKRDGVCAASLPTTMGIVAGFLVQNTLKYLLNFGEVSYYLGYNAMQDFFPKMT 288

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWG 281
           L+PNP+CDD YC +RQ+E+  +P + + E    E + +H DN+WG
Sbjct: 289 LRPNPNCDDRYCRERQQEYALKPKQEQREEQIVEDKPLHEDNEWG 333

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094899|ref|XP_973315.1| PREDICTED: similar to GA14526-PA [Tribolium castaneum] gi|270006537|gb|EFA02985.1| hypothetical protein TcasGA2_TC010401 [Tribolium castaneum]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/288 (73%), Positives = 234/288 (81%), Gaps = 11/288 (3%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV NYE+IR  +V +VGVGGVGSVTAEMLTRCGIG+LILFDYDKVELANMNRL
Sbjct: 47  MALKRMGIVNNYENIRNFSVAIVGVGGVGSVTAEMLTRCGIGRLILFDYDKVELANMNRL 106

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALA---VQGSLTEGPVDL 117
           FFQP Q GLSKVEAA  TL+NINPDV I  +N+NIT +      +     GSLT GPVDL
Sbjct: 107 FFQPHQSGLSKVEAAAETLKNINPDVDILTYNYNITSIENFDNFSNILRTGSLTNGPVDL 166

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VLSCVDNFEAR TIN  CN+   TWFESGVSENAVSGH+Q I+PGE+ACFACAPPL+VAS
Sbjct: 167 VLSCVDNFEARFTINAVCNEFNLTWFESGVSENAVSGHVQFIVPGETACFACAPPLVVAS 226

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL 237
           +IDEKTLK+DGVCAASLPTTMG++AGFLVQNALK LLKFG VS YLGYSALTDFFP M L
Sbjct: 227 NIDEKTLKRDGVCAASLPTTMGVIAGFLVQNALKYLLKFGNVSNYLGYSALTDFFPNMNL 286

Query: 238 KPNPSCDDSYCVQRQKEFNARP----VEVKLEAAKPEAQVVHADNDWG 281
           KPNP CDDS C  RQ+EF A+P    VE K E+  P    VH DN+WG
Sbjct: 287 KPNPHCDDSNCQLRQREFAAKPKVQVVENKQESDTP----VHEDNEWG 330

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290462395|gb|ADD24245.1| Ubiquitin-like modifier-activating enzyme 5 [Lepeophtheirus salmonis]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/287 (70%), Positives = 229/287 (79%), Gaps = 6/287 (2%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV+NYE IR  +V +VG+GGVGSV AEMLTRCGIGKLILFDYDKVELANMNRL
Sbjct: 47  MALKRMGIVDNYEKIRDYSVAIVGIGGVGSVAAEMLTRCGIGKLILFDYDKVELANMNRL 106

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEGPVDL 117
           FFQP Q GLSKV+AA  TL  INPDV  E HN+NIT          +   GSLT+GP+DL
Sbjct: 107 FFQPHQSGLSKVQAASQTLSFINPDVQFETHNYNITTTDNFDHFMSRISTGSLTDGPLDL 166

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VLSCVDNFEA M IN ACN+LGQTW+ESGVSENAVSGHIQ + PGE+ACFACAPPL+VAS
Sbjct: 167 VLSCVDNFEALMAINKACNELGQTWYESGVSENAVSGHIQFLKPGETACFACAPPLVVAS 226

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL 237
           +IDEKTLK+DGVCAASLPTTMGIVAGFLVQN LK LLKFG+VS YLGY+A+ DFFP M +
Sbjct: 227 NIDEKTLKRDGVCAASLPTTMGIVAGFLVQNTLKYLLKFGQVSHYLGYNAMLDFFPTMSM 286

Query: 238 KPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQV---VHADNDWG 281
           KPN  CD+ YC +RQ+E+     ++  E  K   +V   VH DN+WG
Sbjct: 287 KPNVDCDEYYCRKRQEEWKIEYEKILKETPKEVEKVEDIVHEDNEWG 333

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346466799|gb|AEO33244.1| hypothetical protein [Amblyomma maculatum]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/292 (69%), Positives = 231/292 (79%), Gaps = 17/292 (5%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMG+V+NYE IR  TV ++GVGGVGSV AEMLTRCGIGKLILFDYDKVELANMNRL
Sbjct: 96  MALKRMGVVDNYEDIRMFTVAIIGVGGVGSVAAEMLTRCGIGKLILFDYDKVELANMNRL 155

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL---RKVGALAVQGSLTEGPVDL 117
           FFQP+Q G+ KV+AA  TL  INPDV I+VH  NIT +        L   G+L  GPV+L
Sbjct: 156 FFQPNQAGMHKVDAAAETLMFINPDVEIQVHKHNITTVDNFEHFMDLIRTGNLLGGPVEL 215

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VLSCVDNFEARM IN ACN+L Q W ESGVSENAVSGHIQL++PG++ACFACAPPL+VAS
Sbjct: 216 VLSCVDNFEARMAINTACNELNQVWMESGVSENAVSGHIQLVVPGKTACFACAPPLVVAS 275

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMKL 237
           +IDEKTLK++GVCAASLPTTMGIVAGFLVQNALK LLKFG VS YLGY+AL DFFP M++
Sbjct: 276 NIDEKTLKREGVCAASLPTTMGIVAGFLVQNALKYLLKFGTVSHYLGYNALQDFFPTMQM 335

Query: 238 KPNPSCDDSYCVQRQKEFNAR--------PVEVKLEAAKPEAQVVHADNDWG 281
           KPN  CDDS+C  RQ E+ A+        PVE      K + +VVH DN+WG
Sbjct: 336 KPNSQCDDSFCRLRQMEYQAQEAVKRAPEPVE------KQKEEVVHEDNEWG 381

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
UNIPROTKB|A7MAZ3	404	UBA5 "Ubiquitin-like modifier-	0.962	0.695	0.685	1.1e-101
UNIPROTKB|Q3KQ23	397	uba5 "Ubiquitin-like modifier-	0.962	0.707	0.696	1.8e-101
UNIPROTKB|E2QZV1	427	UBA5 "Uncharacterized protein"	0.962	0.658	0.681	3.8e-101
MGI|MGI:1913913	403	Uba5 "ubiquitin-like modifier	0.962	0.697	0.686	1e-100
UNIPROTKB|E7EQ61	377	UBA5 "Ubiquitin-like modifier-	0.962	0.745	0.678	1.3e-100
UNIPROTKB|Q9GZZ9	404	UBA5 "Ubiquitin-like modifier-	0.962	0.695	0.678	1.3e-100
UNIPROTKB|E7EWE1	347	UBA5 "Ubiquitin-like modifier-	0.958	0.806	0.677	5.6e-100
UNIPROTKB|Q5R8X4	404	UBA5 "Ubiquitin-like modifier-	0.962	0.695	0.671	9.1e-100
ZFIN|ZDB-GENE-031112-2	399	uba5 "ubiquitin-like modifier	0.962	0.704	0.668	9.1e-100
UNIPROTKB|F1NQ79	399	UBA5 "Ubiquitin-like modifier-	0.962	0.704	0.678	1.2e-99

UNIPROTKB|A7MAZ3 UBA5 "Ubiquitin-like modifier-activating enzyme 5" [Bos taurus (taxid:9913)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 196/286 (68%), Positives = 224/286 (78%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIV +YE IRT T            TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    57 MALKRMGIVSDYEKIRTFTVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 116

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
             FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct:   117 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFEHFMNRISNGGLEEGKPVD 176

Query:   117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
             LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct:   177 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 236

Query:   177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
             ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct:   237 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 296

Query:   237 LKPNPSCDDSYCVQRQKEFNARPVEV-KLEAAKPEAQVVHADNDWG 281
             +KPNP CDD  C ++QKE+  +   + K E  + E +++H DN+WG
Sbjct:   297 MKPNPQCDDRNCRKQQKEYKKKVAALPKQEVIQEEGEIIHEDNEWG 342

GO:0071569 "protein ufmylation" evidence=ISS

GO:0071566 "UFM1 activating enzyme activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

UNIPROTKB|Q3KQ23 uba5 "Ubiquitin-like modifier-activating enzyme 5" [Xenopus laevis (taxid:8355)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 200/287 (69%), Positives = 222/287 (77%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIVENYE IRT T            TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    51 MALKRMGIVENYEKIRTFTVAVVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 110

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALA---VQGSLTEG-PVD 116
             FFQP Q GLSKVEAA  TL+NINPDV  EVHN+NIT L           +G L EG PVD
Sbjct:   111 FFQPHQAGLSKVEAAEHTLRNINPDVQFEVHNYNITTLDNFQHFMDRISKGGLKEGSPVD 170

Query:   117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
             LVLSCVDNFEARM IN ACN+LGQ W ESGVSENAVSGHIQLI PGE+ACFACAPPL+VA
Sbjct:   171 LVLSCVDNFEARMAINTACNELGQVWMESGVSENAVSGHIQLIKPGETACFACAPPLVVA 230

Query:   177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
             ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct:   231 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKYLLNFGTVSFYLGYNAMQDFFPTMA 290

Query:   237 LKPNPSCDDSYCVQRQKEFNARPV-EVKLEAAK-PEAQVVHADNDWG 281
             +KPNP CDD YC ++Q+EF  +   + K E     E +VVH DNDWG
Sbjct:   291 MKPNPQCDDKYCRKQQEEFKLKEAAKPKQETVVVEEEEVVHEDNDWG 337

GO:0071566 "UFM1 activating enzyme activity" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

UNIPROTKB|E2QZV1 UBA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 195/286 (68%), Positives = 223/286 (77%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIV +YE IRT              TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    80 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 139

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
             FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct:   140 FFQPHQAGLSKVQAAEYTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 199

Query:   117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
             LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct:   200 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 259

Query:   177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
             ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct:   260 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 319

Query:   237 LKPNPSCDDSYCVQRQKEFNARPVEV-KLEAAKPEAQVVHADNDWG 281
             +KPNP CDD  C + Q+E+  +   + K EA + E +++H DN+WG
Sbjct:   320 MKPNPQCDDRNCRKHQEEYKKKVAALPKQEAIQEEEEIIHEDNEWG 365

GO:0071569 "protein ufmylation" evidence=IEA

GO:0071566 "UFM1 activating enzyme activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1913913 Uba5 "ubiquitin-like modifier activating enzyme 5" [Mus musculus (taxid:10090)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 197/287 (68%), Positives = 224/287 (78%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIV +Y+ IRT              TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    55 MALKRMGIVSDYKKIRTYAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 114

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
             FFQP Q GLSKV AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct:   115 FFQPYQAGLSKVHAAEHTLRNINPDVLFEVHNYNITTVEHFEHFMNRISNGGLEEGQPVD 174

Query:   117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
             LVLSCVDNFEARM IN ACN+LGQTW ESGVSENAVSGHIQL+IPGESACFACAPPL+VA
Sbjct:   175 LVLSCVDNFEARMAINTACNELGQTWMESGVSENAVSGHIQLMIPGESACFACAPPLVVA 234

Query:   177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
             S+IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LLKFG VS+YLGY+A+ DFFP M 
Sbjct:   235 SNIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLKFGTVSFYLGYNAMQDFFPTMF 294

Query:   237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKP--EAQVVHADNDWG 281
             +KPNP CDD  C ++Q+E+  R   +  + A+P  EA+VVH DN+WG
Sbjct:   295 MKPNPQCDDKNCRKQQEEYKKRAAALPTQEAEPQEEAEVVHEDNEWG 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0071566 "UFM1 activating enzyme activity" evidence=ISO

GO:0071569 "protein ufmylation" evidence=ISO;IDA

UNIPROTKB|E7EQ61 UBA5 "Ubiquitin-like modifier-activating enzyme 5" [Homo sapiens (taxid:9606)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 194/286 (67%), Positives = 223/286 (77%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIV +YE IRT              TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    57 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 116

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
             FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct:   117 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 176

Query:   117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
             LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct:   177 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 236

Query:   177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
             ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct:   237 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 296

Query:   237 LKPNPSCDDSYCVQRQKEFNARPVEV-KLEAAKPEAQVVHADNDWG 281
             +KPNP CDD  C ++Q+E+  +   + K E  + E +++H DN+WG
Sbjct:   297 MKPNPQCDDRNCRKQQEEYKKKVAALPKQEVIQEEEEIIHEDNEWG 342

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0071569 "protein ufmylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016235 "aggresome" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q9GZZ9 UBA5 "Ubiquitin-like modifier-activating enzyme 5" [Homo sapiens (taxid:9606)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 194/286 (67%), Positives = 223/286 (77%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIV +YE IRT              TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    57 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 116

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
             FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct:   117 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 176

Query:   117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
             LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct:   177 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 236

Query:   177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
             ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct:   237 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 296

Query:   237 LKPNPSCDDSYCVQRQKEFNARPVEV-KLEAAKPEAQVVHADNDWG 281
             +KPNP CDD  C ++Q+E+  +   + K E  + E +++H DN+WG
Sbjct:   297 MKPNPQCDDRNCRKQQEEYKKKVAALPKQEVIQEEEEIIHEDNEWG 342

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071569 "protein ufmylation" evidence=IDA

GO:0071566 "UFM1 activating enzyme activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016235 "aggresome" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E7EWE1 UBA5 "Ubiquitin-like modifier-activating enzyme 5" [Homo sapiens (taxid:9606)]

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 193/285 (67%), Positives = 222/285 (77%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIV +YE IRT              TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    57 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 116

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
             FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct:   117 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 176

Query:   117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
             LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct:   177 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 236

Query:   177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
             ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct:   237 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 296

Query:   237 LKPNPSCDDSYCVQRQKEFNARPVEV-KLEAAKPEAQVVHADNDW 280
             +KPNP CDD  C ++Q+E+  +   + K E  + E +++H DN+W
Sbjct:   297 MKPNPQCDDRNCRKQQEEYKKKVAALPKQEVIQEEEEIIHEDNEW 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016235 "aggresome" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q5R8X4 UBA5 "Ubiquitin-like modifier-activating enzyme 5" [Pongo abelii (taxid:9601)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 192/286 (67%), Positives = 223/286 (77%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIV +YE IRT              TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    57 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 116

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
             FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        +   G L EG PVD
Sbjct:   117 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 176

Query:   117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
             LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct:   177 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 236

Query:   177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
             ++IDEK+LK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct:   237 ANIDEKSLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 296

Query:   237 LKPNPSCDDSYCVQRQKEFNARPVEV-KLEAAKPEAQVVHADNDWG 281
             +KPNP CDD  C ++Q+E+  +   + K E  + + +++H DN+WG
Sbjct:   297 MKPNPQCDDRNCRKQQEEYKKKVAALPKQEVIQEKEEIIHEDNEWG 342

GO:0071566 "UFM1 activating enzyme activity" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

ZFIN|ZDB-GENE-031112-2 uba5 "ubiquitin-like modifier activating enzyme 5" [Danio rerio (taxid:7955)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 192/287 (66%), Positives = 222/287 (77%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIV++YE IR+              TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    53 MALKRMGIVQDYEKIRSFAVAVVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 112

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRK----VGALAVQGSLTEG-PV 115
             FFQP Q GLSKVEAA+ TL+NINPDV  E HN+NIT +      +  +   G L EG PV
Sbjct:   113 FFQPHQAGLSKVEAAQHTLRNINPDVAFETHNYNITTMDNFTHFMDRVRYHGGLEEGKPV 172

Query:   116 DLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIV 175
             DL+LSCVDNFEARM IN ACN+LGQ W ESGVSENAVSGHIQLIIPGE+ACFACAPPL+V
Sbjct:   173 DLILSCVDNFEARMAINTACNELGQIWMESGVSENAVSGHIQLIIPGETACFACAPPLVV 232

Query:   176 ASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKM 235
             A++IDEKTLK+DGVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M
Sbjct:   233 AANIDEKTLKRDGVCAASLPTTMGVVAGLLVQNVLKYLLGFGTVSYYLGYNAMQDFFPSM 292

Query:   236 KLKPNPSCDDSYCVQRQKEFNARPVE-VKLEAAKPEAQVVHADNDWG 281
              +K NP CDD +C ++Q E+  +  E  K E  + E +VVH DN+WG
Sbjct:   293 AMKANPQCDDRHCRRQQDEYKKKEAERPKQEVVQEEEEVVHEDNEWG 339

GO:0048037 "cofactor binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1NQ79 UBA5 "Ubiquitin-like modifier-activating enzyme 5" [Gallus gallus (taxid:9031)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 194/286 (67%), Positives = 221/286 (77%)

Query:     1 MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
             MALKRMGIV++YE IRT T            TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct:    52 MALKRMGIVKDYEKIRTFTVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 111

Query:    61 FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQ---GSLTEG-PVD 116
             FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT L        +   G+L EG PVD
Sbjct:   112 FFQPHQAGLSKVQAAEHTLRNINPDVQFEVHNYNITTLDNFEHFMDRISNGALEEGKPVD 171

Query:   117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
             LVLSCVDNFEARM IN ACN+LGQ W ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct:   172 LVLSCVDNFEARMAINTACNELGQIWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 231

Query:   177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
             ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct:   232 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKYLLNFGTVSYYLGYNAMQDFFPTMA 291

Query:   237 LKPNPSCDDSYCVQRQKEFNARPV-EVKLEAAKPEAQVVHADNDWG 281
             +KPNP C D  C ++Q+ +  +   + K E    E ++VH DNDWG
Sbjct:   292 MKPNPQCSDQNCRKQQENYKIKEAAQPKQEEIHQEEEIVHEDNDWG 337

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0071566 "UFM1 activating enzyme activity" evidence=IEA

GO:0071569 "protein ufmylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9GZZ9	UBA5_HUMAN	No assigned EC number	0.7480	0.8835	0.6386	yes	N/A
Q17DT0	UBA5_AEDAE	No assigned EC number	0.7017	0.9623	0.7078	N/A	N/A
Q5M7A4	UBA5_RAT	No assigned EC number	0.7108	0.9623	0.6972	yes	N/A
A7MAZ3	UBA5_BOVIN	No assigned EC number	0.7202	0.9623	0.6955	yes	N/A
B4PYA4	UBA5_DROYA	No assigned EC number	0.7087	0.9623	0.6972	N/A	N/A
Q3KQ23	UBA5_XENLA	No assigned EC number	0.7269	0.9417	0.6926	N/A	N/A
Q5R8X4	UBA5_PONAB	No assigned EC number	0.7062	0.9623	0.6955	yes	N/A
O23034	UBA5_ARATH	No assigned EC number	0.6254	0.9520	0.6450	yes	N/A
B4IK21	UBA5_DROSE	No assigned EC number	0.7052	0.9623	0.6955	N/A	N/A
B4R345	UBA5_DROSI	No assigned EC number	0.7017	0.9623	0.6955	N/A	N/A
B3NUC9	UBA5_DROER	No assigned EC number	0.7017	0.9623	0.6990	N/A	N/A
C3YZ51	UBA5_BRAFL	No assigned EC number	0.6883	0.9452	0.6814	yes	N/A
P91430	UBA5_CAEEL	No assigned EC number	0.6933	0.9623	0.6706	yes	N/A
D1GY43	UBA5_DROAN	No assigned EC number	0.7073	0.9589	0.7070	N/A	N/A
B9VJ80	UBA5_BOMMO	No assigned EC number	0.7333	0.9589	0.7124	N/A	N/A
Q6GLG7	UBA5_XENTR	No assigned EC number	0.7098	0.9417	0.6892	yes	N/A
B0WQV1	UBA5_CULQU	No assigned EC number	0.7062	0.9623	0.7078	N/A	N/A
Q29HT0	UBA5_DROPS	No assigned EC number	0.7122	0.9623	0.7078	yes	N/A
B4GYC7	UBA5_DROPE	No assigned EC number	0.7117	0.9486	0.7213	N/A	N/A
Q8VE47	UBA5_MOUSE	No assigned EC number	0.7142	0.9623	0.6972	yes	N/A
B4NDE5	UBA5_DROWI	No assigned EC number	0.7017	0.9623	0.6921	N/A	N/A
Q6IVA4	UBA5_CHICK	No assigned EC number	0.7020	0.9417	0.6926	yes	N/A
Q54C02	UBA5_DICDI	No assigned EC number	0.6946	0.8732	0.6692	yes	N/A
Q6K6K7	UBA5_ORYSJ	No assigned EC number	0.6313	0.9589	0.6650	yes	N/A
Q9VYY3	UBA5_DROME	No assigned EC number	0.7052	0.9623	0.6955	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	292
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	8e-75
pfam00899	134	pfam00899, ThiF, ThiF family	1e-36
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	7e-33
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	4e-28
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	2e-25
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	3e-25
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	1e-23
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	3e-23
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	3e-23
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	3e-22
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	5e-20
PRK12475	338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	4e-19
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	1e-18
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	2e-18
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	2e-17
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	2e-16
TIGR02354	200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	7e-16
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	2e-15
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	5e-15
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	6e-13
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	1e-12
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	3e-10
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	6e-10
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	6e-10
PRK08223	287	PRK08223, PRK08223, hypothetical protein; Validate	2e-09
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	4e-09
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	8e-09
TIGR03736	244	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family pr	1e-06
PRK14851	679	PRK14851, PRK14851, hypothetical protein; Provisio	4e-06
cd01486	307	cd01486, Apg7, Apg7 is an E1-like protein, that ac	8e-05
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	4e-04
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	6e-04
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	8e-04
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	0.002
PRK14852	989	PRK14852, PRK14852, hypothetical protein; Provisio	0.002

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score =  228 bits (583), Expect = 8e-75
 Identities = 82/242 (33%), Positives = 108/242 (44%), Gaps = 24/242 (9%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR- 59
           + L  +G  E  E ++   V+VVG GG+GS  AE L   G+GKL L D D VEL+N+ R 
Sbjct: 6   ILLPEIGE-EGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQ 64

Query: 60  LFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE--GPVDL 117
           +       G  K EAA   L+ INPDV IE +N  +             +  E     DL
Sbjct: 65  ILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLD----------AENAEELIAGYDL 114

Query: 118 VLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           VL C DNF  R  IN AC +LG+      V      G + + IPGE  C+ C  P     
Sbjct: 115 VLDCTDNFATRYLINDACVKLGKPLVSGAVLG--FEGQVTVFIPGEGPCYRCLFPEPPPP 172

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSW--YLGYSALTDFFPKM 235
            +           A  L   +G++       ALK LL  GE      L + AL+  F  +
Sbjct: 173 GVP------SCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTL 226

Query: 236 KL 237
           KL
Sbjct: 227 KL 228

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score =  126 bits (320), Expect = 1e-36
 Identities = 54/135 (40%), Positives = 72/135 (53%), Gaps = 13/135 (9%)

Query: 18  LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAAR 76
             V+VVG GG+GS  AE L R G+GKL L D+D VEL+N+NR + F     G  K E A+
Sbjct: 2   SRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAK 61

Query: 77  ITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE--GPVDLVLSCVDNFEARMTINMA 134
             L+ INPDV +E +   +T            +L E    VDLV+  +DNF AR  +N A
Sbjct: 62  ERLRAINPDVEVEAYPERLT----------PENLEELLKGVDLVVDALDNFAARYLLNDA 111

Query: 135 CNQLGQTWFESGVSE 149
           C + G     +G   
Sbjct: 112 CVKRGIPLISAGALG 126

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score =  120 bits (304), Expect = 7e-33
 Identities = 71/231 (30%), Positives = 101/231 (43%), Gaps = 22/231 (9%)

Query: 19  TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARI 77
            V+VVG GG+GS  A+ L   G+GKL + D+D VEL+N+ R   F     G  K E A  
Sbjct: 32  RVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAK 91

Query: 78  TLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ 137
            L+ +NP V +  +   +        +A          D+VL C DNFE R  IN AC +
Sbjct: 92  ALRKLNPLVEVVAYLERLDEENAEELIA--------QFDVVLDCTDNFETRYLINDACVK 143

Query: 138 LGQTWFESGVSENAVSGHIQLIIPGE-SACFACAPPLIVASSIDEKTLKKDGVCAASLPT 196
           LG      G       G + +IIPG+ + C+ C  P      +   +  + GV    L  
Sbjct: 144 LGIPLVHGGA--IGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAGV----LGP 197

Query: 197 TMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDF-----FPKMKLKPNPS 242
            +G+V       A+K L   G     +G   L D      F  +KL+  P 
Sbjct: 198 LVGVVGSLQALEAIKLLTGIGLEPL-IGRLLLYDALDMERFRTLKLRRRPI 247

Length = 254

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score =  106 bits (267), Expect = 4e-28
 Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 24/217 (11%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR- 59
           + L  +G  E  + +    V+++G GG+GS  A  L   G+G +++ D D V+L+N+ R 
Sbjct: 6   LLLPDIG-EEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQ 64

Query: 60  LFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVL 119
           + F  +  G  KVE A   L+ +N D+ +        L  +V A  ++  +    VDLVL
Sbjct: 65  ILFTEEDVGRPKVEVAAQRLRELNSDIQVT------ALKERVTAENLELLIN--NVDLVL 116

Query: 120 SCVDNFEARMTINMACNQLGQTWFESGVSENAV--SGHIQLIIPG-ESACFACAPPLIVA 176
            C DNF  R  IN AC  LG       +S   V   G + +  PG E  C  C  P I  
Sbjct: 117 DCTDNFATRYLINDACVALGTPL----ISAAVVGFGGQLMVFDPGGEGPCLRCLFPDIAD 172

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKL 213
           +     +    GV    +   +G++       ALK L
Sbjct: 173 T---GPSCATAGV----IGPVVGVIGSLQALEALKLL 202

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score =   99 bits (250), Expect = 2e-25
 Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 12/124 (9%)

Query: 10  ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGL 69
           +  E ++   V + G GG+GS  A  L R G+G L L D+D VE +N+NR  +   Q G+
Sbjct: 21  KLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGM 80

Query: 70  SKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE--GPVDLVLSCVDNFEA 127
            KVEA +  L  INP V IE HN  I           + ++ E     D+V+   DN E 
Sbjct: 81  PKVEALKENLLEINPFVEIEAHNEKID----------EDNIEELFKDCDIVVEAFDNAET 130

Query: 128 RMTI 131
           +  +
Sbjct: 131 KAML 134

Length = 212

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 97.7 bits (244), Expect = 3e-25
 Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 19  TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARI 77
            V++VG+GG+GS  A  L R G+GK+ L D+D VEL+N+NR    +    G  K E A  
Sbjct: 1   RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAAR 60

Query: 78  TLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ 137
            L  +NP V +      I+       L          VDLV+  +DN   R  +N AC +
Sbjct: 61  RLNELNPGVNVTAVPEGISEDNLDDFL--------DGVDLVIDAIDNIAVRRALNRACKE 112

Query: 138 LGQTWFESGVSENAVSGHIQLIIPGESAC 166
           LG    ++G     + G IQ+I  G  + 
Sbjct: 113 LGIPVIDAGGL--GLGGDIQVIDIGSLSA 139

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 95.7 bits (239), Expect = 1e-23
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 8/119 (6%)

Query: 10  ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCG 68
           E  E +R   V VVG+GGVGS  AE L R G+GKL L D+D V ++N+NR +       G
Sbjct: 4   EGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVG 63

Query: 69  LSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEA 127
             KVE     +++INP+  ++     +T             L  G  D V+  +D+  A
Sbjct: 64  KPKVEVMAERIRDINPECEVDAVEEFLT-------PDNSEDLLGGDPDFVVDAIDSIRA 115

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score = 97.0 bits (242), Expect = 3e-23
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 17/162 (10%)

Query: 13  EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPD-QCGL 69
           + +R   V+++G G +G+  AEML R G+GK+ + D D VE +N+ R  L+ + D +  L
Sbjct: 20  QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNL 79

Query: 70  SKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARM 129
            K  AA+  L+ IN DV +E    ++T   ++  L V G      VDL++   DNFE R 
Sbjct: 80  PKAVAAKKRLEEINSDVRVEAIVQDVT-AEELEEL-VTG------VDLIIDATDNFETRF 131

Query: 130 TINMACNQLGQTWFESGVSENAVS--GHIQLIIPGESACFAC 169
            +N A  + G  W         V   G    IIPG++ C  C
Sbjct: 132 IVNDAAQKYGIPWIYGA----CVGSYGLSYTIIPGKTPCLRC 169

Length = 339

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 97.4 bits (243), Expect = 3e-23
 Identities = 73/238 (30%), Positives = 111/238 (46%), Gaps = 36/238 (15%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARIT 78
           V+++G GG+GS  A  L   G+G L + D+D V+ +N+ R +    D+ G  KV++A   
Sbjct: 138 VLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQR 197

Query: 79  LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL 138
           L  +NPDV +E     +T    V AL +Q       VD+V+   DNF  R  +N AC +L
Sbjct: 198 LAALNPDVQVEAVQERVT-SDNVEAL-LQD------VDVVVDGADNFPTRYLLNDACVKL 249

Query: 139 GQTWFESGVSENAV---SGHIQLIIPGESA----CFAC----APPLIVASSIDEKTLKKD 187
           G+      +   AV    G + +   G       C+ C     PP  +A S  E      
Sbjct: 250 GKP-----LVYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAEA----- 299

Query: 188 GVCAASLPTTMGIVAGFLVQNALKKLLKFGE--VSWYLGYSALTDFFPKMKLKPNPSC 243
           GV    LP  +G++       A+K LL  G+      L + AL   F +++L P+P C
Sbjct: 300 GVLGV-LPGVIGLLQA---TEAIKLLLGIGDPLTGRLLTFDALAMRFRELRLPPDPHC 353

Length = 376

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score = 92.2 bits (230), Expect = 3e-22
 Identities = 72/233 (30%), Positives = 104/233 (44%), Gaps = 31/233 (13%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARIT 78
           V+VVG+GG+G   ++ L   G+G L L D+D V L+N+ R +       G  KVE+AR  
Sbjct: 35  VLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAA 94

Query: 79  LQNINPDVTIEVHNFNI---TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC 135
           L  INP + IE  N  +    L   +              DLVL C DN   R  +N AC
Sbjct: 95  LARINPHIAIETINARLDDDELAALIAG-----------HDLVLDCTDNVATRNQLNRAC 143

Query: 136 NQLGQTWFESGVSENAV--SGHIQLIIPGESA-CFACAPPLIVASSIDEKTLKKDGVCAA 192
               +      VS  A+   G + +    +   C+ C   L   +++   T  + GV A 
Sbjct: 144 FAAKKPL----VSGAAIRMEGQVTVFTYQDDEPCYRCLSRLFGENAL---TCVEAGVMAP 196

Query: 193 SLPTTMGIVAGFLVQNALKKLLKFGE--VSWYLGYSALTDFFPKMKLKPNPSC 243
            L    G++       A+K L  +GE      L Y A+T  F +MKLK +P C
Sbjct: 197 -LV---GVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLKRDPGC 245

Length = 245

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 87.0 bits (216), Expect = 5e-20
 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 8/120 (6%)

Query: 10  ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCG 68
           +  E ++   V VVG+GGVGS   E L R GIG++ L D D V + N NR +       G
Sbjct: 23  DGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIG 82

Query: 69  LSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEAR 128
             KVE  +  ++ INP+  +   N  IT             L     D V+  +D+  A+
Sbjct: 83  KPKVEVMKERIKQINPECEVTAINDFIT-------EENLEDLLSKGFDYVIDAIDSVRAK 135

Length = 263

>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

 Score = 85.6 bits (212), Expect = 4e-19
 Identities = 64/206 (31%), Positives = 94/206 (45%), Gaps = 24/206 (11%)

Query: 13  EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPD--QCG 68
             IR   V++VG G +G+  AE L R GIGKL + D D VE +N+ R  L+ + D  Q  
Sbjct: 20  RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQK- 78

Query: 69  LSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEAR 128
             K  AA+  L+ IN +V I     ++T       +     L +  VDL++   DNF+ R
Sbjct: 79  KPKAIAAKEHLRKINSEVEIVPVVTDVT-------VEELEELVKE-VDLIIDATDNFDTR 130

Query: 129 MTINMACNQLGQTWFESG-VSENAVSGHIQLIIPGESACFACAPPLIVASSIDEKTLKKD 187
           + IN    +    W   G V    V+     IIPG++ C  C   L+    +   T    
Sbjct: 131 LLINDLSQKYNIPWIYGGCVGSYGVT---YTIIPGKTPCLRC---LMEHVPVGGATCDTA 184

Query: 188 GVCAASLPTTMGIVAGFLVQNALKKL 213
           G+    +   + IV  + V  ALK L
Sbjct: 185 GI----IQPAVQIVVAYQVTEALKIL 206

Length = 338

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score = 83.6 bits (207), Expect = 1e-18
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 24/160 (15%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARIT 78
           V+VVG GG+G    + L   G G++ + D D ++L+N+NR F F+    G SK + A+  
Sbjct: 2   VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEA 61

Query: 79  LQNINPDVTIEVHN-------FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTI 131
           + + NP+V I  ++       FN+   ++               DLV + +DN  AR  +
Sbjct: 62  VLSFNPNVKIVAYHANIKDPDFNVEFFKQ--------------FDLVFNALDNLAARRHV 107

Query: 132 NMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAP 171
           N  C        ESG +     G +Q+I  G++ C+ C P
Sbjct: 108 NKMCLAADVPLIESGTT--GFLGQVQVIKKGKTECYECQP 145

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score = 81.8 bits (202), Expect = 2e-18
 Identities = 68/237 (28%), Positives = 102/237 (43%), Gaps = 25/237 (10%)

Query: 13  EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPD-QCGLSK 71
           E ++   V++VG+GG+G   ++ L   G+G L L D+D V L+N+ R     D   G  K
Sbjct: 20  EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPK 79

Query: 72  VEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTI 131
           VE+A+  L  INP + I   N  +    ++ AL  +        D+V+ C DN E R  +
Sbjct: 80  VESAKDALTQINPHIAINPINAKLDD-AELAALIAE-------HDIVVDCTDNVEVRNQL 131

Query: 132 NMACNQLGQTWFESGVSENAVSGHIQLII---PGESACFACAPPLIVASSIDEKTLKKDG 188
           N  C           VS  A+    Q+ +        C+ C   L       E  L    
Sbjct: 132 NRQCFAAKVPL----VSGAAIRMEGQVSVFTYQDGEPCYRCLSRLF-----GENALS--C 180

Query: 189 VCAASLPTTMGIVAGFLVQNALKKLLKFGE--VSWYLGYSALTDFFPKMKLKPNPSC 243
           V A  +   +G+V       A+K L   G+      L   A+T  F +MKL  NP+C
Sbjct: 181 VEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLPKNPTC 237

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 35/78 (44%), Positives = 45/78 (57%)

Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARIT 78
           V + G GG+GS  A +L R G+G L L D+D VE +N+NR  +   Q G  KVEA +  
Sbjct: 1  KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKEN 60

Query: 79 LQNINPDVTIEVHNFNIT 96
          L+ INP V IE  N  I 
Sbjct: 61 LREINPFVKIEAINIKID 78

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 16/160 (10%)

Query: 9   VENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQ 66
           VE  E ++   V VVGVGG+GS  A  L   G+G+++L D    EL+N+NR  L ++ D 
Sbjct: 19  VEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL 78

Query: 67  CGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQG--SLTEGPVDLVLSCVDN 124
               K  +A+  L+  N D+ IE           VG L+ +    + +G VD+++ C+DN
Sbjct: 79  GKNPKPLSAKWKLERFNSDIKIETF---------VGRLSEENIDEVLKG-VDVIVDCLDN 128

Query: 125 FEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGES 164
           FE R  ++   ++ G       V      G +  I+PG++
Sbjct: 129 FETRYLLDDYAHKKGIPLVHGAVE--GTYGQVTTIVPGKT 166

Length = 231

>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2

 Score = 74.1 bits (182), Expect = 7e-16
 Identities = 36/85 (42%), Positives = 50/85 (58%)

Query: 12  YEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSK 71
            + +   TV + G+GG+GS  A  L R GIGKLIL D+D VE +N+NR  ++  Q G  K
Sbjct: 16  VQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPK 75

Query: 72  VEAARITLQNINPDVTIEVHNFNIT 96
            EA +  +  INP   IE ++  IT
Sbjct: 76  TEALKENISEINPYTEIEAYDEKIT 100

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 200

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARIT 78
           V++VG GG+G    + L   G G++ + D D ++++N+NR F F+P   G  K E A   
Sbjct: 2   VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEA 61

Query: 79  LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL 138
           + + NP+  +  +        KVG              ++++ +DN  AR  +N     L
Sbjct: 62  VNDRNPNCKVVPYQ------NKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFL 115

Query: 139 GQTWFESGVSENAVSGHIQLIIPGESACFACA--PP 172
                ESG       G+ Q+I+PG + C  C   PP
Sbjct: 116 IVPLIESGTE--GFKGNAQVILPGMTECIECTLYPP 149

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 74.4 bits (183), Expect = 5e-15
 Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 46/243 (18%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCGLSKVEAARI 77
           V+V+G GG+GS T   L   G+G L + ++D V+ +N+ R  +  Q D  G SK ++AR 
Sbjct: 45  VLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSD-VGRSKAQSARD 103

Query: 78  TLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ 137
           ++  INP V + +H F    L    A+ +         DL+L   DNF  R  +N A   
Sbjct: 104 SIVEINPLVNVRLHEFR---LDPSNAVELFSQY-----DLILDGTDNFATRYLVNDAAVL 155

Query: 138 LGQ--TW-----FESGVS---ENAVSGHIQLIIPGESACFAC-----APPLIVASSIDEK 182
            G+   W     FE   S   E+A  G            +        PP +V S  +  
Sbjct: 156 AGKPYVWGSIYRFEGQASVFWEDAPDGL--------GLNYRDLYPEPPPPGMVPSCAEGG 207

Query: 183 TLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGE--VSWYLGYSALTDFFPKMKLKPN 240
            L   GV  AS+ + M          A+K +   GE  +   + Y AL   +  +K++ +
Sbjct: 208 VL---GVLCASIGSIM-------GTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKIRKD 257

Query: 241 PSC 243
           PS 
Sbjct: 258 PST 260

Length = 392

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score = 68.0 bits (166), Expect = 6e-13
 Identities = 73/301 (24%), Positives = 109/301 (36%), Gaps = 47/301 (15%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR- 59
           +AL   GI E  E +    V+V+G GG+G    + L   G+G + L D D V+++N++R 
Sbjct: 26  LALPGFGI-EQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQ 84

Query: 60  LFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVL 119
           + F     G  KVE A   L+ I PD+ +      +T    V  L          VDLVL
Sbjct: 85  ILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELL--------NGVDLVL 136

Query: 120 SCVDNFEARMTINMACNQLGQ--TW------------FESGVSENAVSGHIQLIIPGESA 165
              D+F  +  +  A    G    W            F SG     V         G   
Sbjct: 137 DGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGPDHRGV---------GLRD 187

Query: 166 CFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYL 223
            F   P      SI       D   A  L  T  ++   +   A+K L   G+V     L
Sbjct: 188 LFPEQP---SGDSI------PDCATAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVL 238

Query: 224 GYSALTDFFPKMKLKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVHADNDWGEY 283
            Y ALT      ++  +P+      ++   E         ++A    +  +    D  E 
Sbjct: 239 SYDALTATTRSFRVGADPARPLVTRLRPSYEAARTDTTSLIDATLNGSATLL---DVREP 295

Query: 284 H 284
           H
Sbjct: 296 H 296

Length = 370

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 2   ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF 61
            L  +G  +  + +    V V+G GG+GS     L   G+G + + D D V+L+N++R  
Sbjct: 14  MLGEIG-QQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQV 72

Query: 62  FQPDQ-CGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLS 120
                  G  K E+AR  +  +NPDV + V    +T      AL           D++L 
Sbjct: 73  IHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTW---SNAL----DELRD-ADVILD 124

Query: 121 CVDNFEARMTINMACNQLG 139
             DNF+ R   + A  +LG
Sbjct: 125 GSDNFDTRHLASWAAARLG 143

Length = 355

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 74/289 (25%), Positives = 119/289 (41%), Gaps = 56/289 (19%)

Query: 9   VENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQC 67
           +E  + ++  +V+ +G GG+GS     L   GIG++ + D+D V+ +N+ R +       
Sbjct: 30  LEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV 89

Query: 68  GLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEA 127
           G  K+E+A+  +  INP   ++++    T L    AL +       P D+V+   DNF  
Sbjct: 90  GKPKIESAKNRILEINPYCQVDLYE---TRLSSENALDIL-----APYDVVVDGTDNFPT 141

Query: 128 RMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACF-------------ACAPPLI 174
           R  +N AC  L +           V G I     G++  F                PP +
Sbjct: 142 RYLVNDACVLLNKP---------NVYGSI-FRFEGQATVFNYEGGPNYRDLYPEPPPPGM 191

Query: 175 VASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFF 232
           V S  +   L   G+    LP   GI+        +K +L  G       L Y+AL   F
Sbjct: 192 VPSCAEGGVL---GI----LP---GIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKF 241

Query: 233 PKMKLKPNPSCD--------DSYCVQRQKEFNARPVEVKLEAAKPEAQV 273
            ++KL+PNP           + +C   Q    A+  E   +A  PE  V
Sbjct: 242 RELKLRPNPERPVIEKLIDYEQFCGIPQ----AKAAEAAQKAEIPEMTV 286

Length = 390

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 59.5 bits (144), Expect = 6e-10
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 34/166 (20%)

Query: 13  EHIRTLTVIVVGVGGVGSVTAEMLTRCGI--------GKLILFDYDKVELANMNRLF-FQ 63
           + ++ L + +VG G +G    EML    +        G + + D D +E +N+NR F F+
Sbjct: 415 QKLQNLNIFLVGCGAIG---CEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFR 471

Query: 64  PDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEG--------PV 115
           P   G  K   A      INP + I+ H        +VG        TE          +
Sbjct: 472 PHHIGKPKSYTAADATLKINPQIKIDAH------QNRVGPE------TETIFNDEFYEKL 519

Query: 116 DLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP 161
           D+V++ +DN EAR  ++  C    +   ESG       G+ Q+++P
Sbjct: 520 DVVINALDNVEARRYVDSRCLAFLKPLLESGTL--GTKGNTQVVVP 563

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 28/163 (17%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARIT 78
           ++V+G GG+G    + L   G   + + D D ++++N+NR F F+    G  K E A   
Sbjct: 2   ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKF 61

Query: 79  LQNINPDVTIEVHN-----FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTIN- 132
           + +  P V +  H       +    R+               ++++  +D+ EAR  IN 
Sbjct: 62  VNDRVPGVNVTPHFGKIQDKDEEFYRQ--------------FNIIICGLDSIEARRWING 107

Query: 133 MACNQLGQTWFES------GVSENAVSGHIQLIIPGESACFAC 169
              + L     ES      G +E    GH ++I+PG +AC  C
Sbjct: 108 TLVSLLLYEDPESIIPLIDGGTE-GFKGHARVILPGITACIEC 149

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 25/141 (17%)

Query: 9   VENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQP-DQC 67
               + +R   V + G+GGVG +    L R GIGK  + D+D  EL N NR         
Sbjct: 19  PTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL 78

Query: 68  GLSKVEAARITLQNINPDVTIEV-------HNFNITLLRKVGALAVQGSLTEGPVDLVLS 120
           G  K E     +++INP++ I          N +  L              +G VD+ + 
Sbjct: 79  GRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFL--------------DG-VDVYVD 123

Query: 121 CVDNFE--ARMTINMACNQLG 139
            +D FE  AR  +  AC Q G
Sbjct: 124 GLDFFEFDARRLVFAACQQRG 144

Length = 287

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARIT 78
          + VVG+GGVGS  AE L R GIG + L D D V + N NR +    D  GL+K E     
Sbjct: 33 ICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAER 92

Query: 79 LQNINPD 85
          ++ INP+
Sbjct: 93 IRQINPE 99

Length = 268

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 36/160 (22%)

Query: 20  VIVVGVGGVGSVTAEML---------TRCGIGKLILFDYDKVELANMNRLF-FQPDQCGL 69
           V +VG G +G    E+L         T    G++ + D D +E +N+NR F F+P   G 
Sbjct: 2   VFLVGAGAIG---CELLKNFALMGVGTGES-GEITVTDMDNIEKSNLNRQFLFRPHDVGK 57

Query: 70  SKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE--------GPVDLVLSC 121
            K E A   ++ +NPD+ I           +VG        TE          +D V + 
Sbjct: 58  PKSEVAAAAVKAMNPDLKITAL------QNRVGPE------TEHIFNDEFWEKLDGVANA 105

Query: 122 VDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP 161
           +DN +ARM ++  C    +   ESG       G+ Q++IP
Sbjct: 106 LDNVDARMYVDRRCVYYRKPLLESGTL--GTKGNTQVVIP 143

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|163448 TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 16  RTLTVIVVGVGGVGSVTAEMLTRCGIGKLIL----------FDYDKVELANMNRLFFQPD 65
           R ++V++VG GG GS     L R       L          +D D V  AN+ R  F P 
Sbjct: 10  RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPA 69

Query: 66  QCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF 125
             G +K   A + +  +N                    +    +L     D+V+ CVDN 
Sbjct: 70  DVGQNK---AIVLVNRLN-------QAMGTDWTAHPERVERSSTL--HRPDIVIGCVDNR 117

Query: 126 EARMTI 131
            AR+ I
Sbjct: 118 AARLAI 123

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. Length = 244

>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 14/120 (11%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQ--PDQCGLSKVEAARI 77
           V + G+GGVG V    + R GIG+  + D+D+ E  N+NR F    P   G  K+   + 
Sbjct: 46  VAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPS-FGRPKLAVMKE 104

Query: 78  TLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE---ARMTINMA 134
              +INP + I      I       A  +   L    VD+VL  +D F+    R   NMA
Sbjct: 105 QALSINPFLEITPFPAGIN------ADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMA 156

Length = 679

>gnl|CDD|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LF-FQPDQCGLSKVEAAR 76
           +++G G +G   A  L   G+  +   D  KV  +N  R  LF F+  + G  K EAA 
Sbjct: 2  CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAA 61

Query: 77 ITLQNINPDVTIEVHNFNITLL 98
            L+ I P +       +I + 
Sbjct: 62 ERLKEIFPSIDATGIVLSIPMP 83

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. Length = 307

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 13  EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQP---DQCGL 69
             +R+  V+++G G +G+  A+ L   GI  + + D+  V   ++   FF        G+
Sbjct: 15  NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGM 74

Query: 70  SKVEAARITLQNINPDVTIE-VHNFNITLLRKVGAL 104
           ++  A+   LQ +NP+V +  V   +++    +   
Sbjct: 75  NRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEY 110

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 2  ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF 61
          A+K++         +   V++ G+GG+G   A+ L   G+  + L D      ++++  F
Sbjct: 13 AMKKL---------QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQF 63

Query: 62 F-QPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT 96
          + + +  G ++ EA++  L  +NP V + V    +T
Sbjct: 64 YLREEDIGKNRAEASQARLAELNPYVPVTVSTGPLT 99

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQC-GLSK 71
          + +R+  ++++G+ G+G+  A+ L   GIG L + D   V   ++   F  P +  G ++
Sbjct: 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76

Query: 72 VEAARITLQNINPDVTIEV 90
           EA+   L+ +NP V + V
Sbjct: 77 AEASLERLRALNPRVKVSV 95

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANM-NRLFFQPDQCGLSKVEAARI 77
           V ++     G+   + L   GIG   + D  KV+  ++ N  F      G S+ EA   
Sbjct: 22 HVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCE 81

Query: 78 TLQNINPDVT 87
           LQ +NPDV 
Sbjct: 82 LLQELNPDVN 91

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 4   KRMGIVENYEHIRTLT--VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF 61
           + +G+V+     R L   V + G+GGVG +    L R GIG   L D+D     N+NR +
Sbjct: 317 RNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQY 376

Length = 989

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
KOG2336|consensus	422		100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
PRK07411	390	hypothetical protein; Validated	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
KOG2017|consensus	427		100.0
PRK08223	287	hypothetical protein; Validated	100.0
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	100.0
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	100.0
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	100.0
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
PRK14852	989	hypothetical protein; Provisional	100.0
PRK14851	679	hypothetical protein; Provisional	100.0
KOG2015|consensus	422		100.0
PRK07877	722	hypothetical protein; Provisional	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	100.0
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	100.0
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	100.0
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.98
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.98
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.97
KOG2013|consensus	603		99.97
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	99.97
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.97
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.97
PRK15116	268	sulfur acceptor protein CsdL; Provisional	99.97
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.97
PRK06153	393	hypothetical protein; Provisional	99.96
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	99.95
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.95
KOG2014|consensus	331		99.93
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.93
KOG2018|consensus	430		99.9
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.9
KOG2012|consensus	1013		99.89
KOG2337|consensus	669		99.84
KOG2012|consensus	1013		99.76
KOG2016|consensus	523		99.75
PF05237	84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	99.65
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	98.81
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	98.72
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.5
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.22
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.18
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.07
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.95
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.93
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.86
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.8
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.79
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.72
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.59
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.58
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.57
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.42
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.34
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.33
PRK06197	306	short chain dehydrogenase; Provisional	97.23
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.16
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.13
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.11
PRK09242	257	tropinone reductase; Provisional	97.09
KOG4169|consensus	261		97.08
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.06
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.06
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.04
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.01
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.0
PRK07062	265	short chain dehydrogenase; Provisional	97.0
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.99
PRK10637	457	cysG siroheme synthase; Provisional	96.97
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.94
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.93
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.91
PRK07063	260	short chain dehydrogenase; Provisional	96.9
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.9
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.83
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.82
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.8
PRK07831	262	short chain dehydrogenase; Provisional	96.78
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.72
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.71
PRK05875	276	short chain dehydrogenase; Provisional	96.7
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.7
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.68
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.67
PRK05854	313	short chain dehydrogenase; Provisional	96.65
PRK08251	248	short chain dehydrogenase; Provisional	96.63
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.61
PTZ00117	319	malate dehydrogenase; Provisional	96.57
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.55
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.53
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.51
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.51
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.5
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.5
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.5
PRK09496	453	trkA potassium transporter peripheral membrane com	96.49
PLN00203	519	glutamyl-tRNA reductase	96.47
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.45
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.42
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.42
PRK09186	256	flagellin modification protein A; Provisional	96.4
PRK05867	253	short chain dehydrogenase; Provisional	96.4
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.38
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.35
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.34
PRK04148	134	hypothetical protein; Provisional	96.34
PRK06194	287	hypothetical protein; Provisional	96.33
PRK06949	258	short chain dehydrogenase; Provisional	96.33
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.33
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.32
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.32
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.31
PRK09496	453	trkA potassium transporter peripheral membrane com	96.31
PRK07478	254	short chain dehydrogenase; Provisional	96.3
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.29
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.28
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.26
PRK08339	263	short chain dehydrogenase; Provisional	96.26
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.26
PRK05872	296	short chain dehydrogenase; Provisional	96.24
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.24
PRK06223	307	malate dehydrogenase; Reviewed	96.23
PRK06138	252	short chain dehydrogenase; Provisional	96.21
PLN02602	350	lactate dehydrogenase	96.21
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.2
PRK05866	293	short chain dehydrogenase; Provisional	96.18
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.18
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.17
PRK12939	250	short chain dehydrogenase; Provisional	96.17
PRK07576	264	short chain dehydrogenase; Provisional	96.16
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.13
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.12
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.12
PRK06139	330	short chain dehydrogenase; Provisional	96.11
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.1
PRK05876	275	short chain dehydrogenase; Provisional	96.08
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.07
PRK08589	272	short chain dehydrogenase; Validated	96.07
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.06
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.06
PRK06940	275	short chain dehydrogenase; Provisional	96.04
PRK06198	260	short chain dehydrogenase; Provisional	96.04
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.03
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.02
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.01
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.01
PRK06181	263	short chain dehydrogenase; Provisional	96.0
PRK08618	325	ornithine cyclodeaminase; Validated	95.99
PRK08265	261	short chain dehydrogenase; Provisional	95.99
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.97
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	95.93
PRK06125	259	short chain dehydrogenase; Provisional	95.93
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.91
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.89
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.89
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.89
PLN02253	280	xanthoxin dehydrogenase	95.88
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	95.88
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.88
PRK07109	334	short chain dehydrogenase; Provisional	95.87
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.87
PRK06172	253	short chain dehydrogenase; Provisional	95.87
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.87
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.85
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.85
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.84
PRK06196	315	oxidoreductase; Provisional	95.84
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.83
PRK07774	250	short chain dehydrogenase; Provisional	95.82
PRK06057	255	short chain dehydrogenase; Provisional	95.82
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.81
KOG0024|consensus	354		95.8
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.8
PRK07326	237	short chain dehydrogenase; Provisional	95.8
PRK12829	264	short chain dehydrogenase; Provisional	95.79
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	95.79
PRK08303	305	short chain dehydrogenase; Provisional	95.79
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.79
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.78
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.78
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	95.78
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.76
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.76
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.75
PRK07890	258	short chain dehydrogenase; Provisional	95.74
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.74
PLN02427	386	UDP-apiose/xylose synthase	95.73
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	95.72
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.71
PRK07035	252	short chain dehydrogenase; Provisional	95.69
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.68
PRK07806	248	short chain dehydrogenase; Provisional	95.68
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.68
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.66
PRK07680	273	late competence protein ComER; Validated	95.63
PRK12937	245	short chain dehydrogenase; Provisional	95.63
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	95.63
PRK06841	255	short chain dehydrogenase; Provisional	95.62
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.61
PRK06914	280	short chain dehydrogenase; Provisional	95.59
PRK12744	257	short chain dehydrogenase; Provisional	95.59
KOG1201|consensus	300		95.57
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.56
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	95.56
PRK06500	249	short chain dehydrogenase; Provisional	95.56
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	95.56
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	95.55
PRK06128	300	oxidoreductase; Provisional	95.55
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.55
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	95.54
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.54
PRK12367	245	short chain dehydrogenase; Provisional	95.53
PRK08264	238	short chain dehydrogenase; Validated	95.53
PRK07067	257	sorbitol dehydrogenase; Provisional	95.53
PRK07814	263	short chain dehydrogenase; Provisional	95.53
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	95.53
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	95.52
PRK06141	314	ornithine cyclodeaminase; Validated	95.52
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.52
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.52
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.51
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.51
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	95.51
PRK07024	257	short chain dehydrogenase; Provisional	95.48
PRK07060	245	short chain dehydrogenase; Provisional	95.48
PRK07677	252	short chain dehydrogenase; Provisional	95.48
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.48
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.48
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.47
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.47
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.47
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.46
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.45
PRK08291	330	ectoine utilization protein EutC; Validated	95.45
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.45
PRK05717	255	oxidoreductase; Validated	95.44
PTZ00325	321	malate dehydrogenase; Provisional	95.44
KOG1205|consensus	282		95.4
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.4
PRK08226	263	short chain dehydrogenase; Provisional	95.39
PLN03209	576	translocon at the inner envelope of chloroplast su	95.38
PRK06720	169	hypothetical protein; Provisional	95.38
PRK08278	273	short chain dehydrogenase; Provisional	95.38
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.37
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.35
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.34
PRK07074	257	short chain dehydrogenase; Provisional	95.34
PRK12480	330	D-lactate dehydrogenase; Provisional	95.33
PRK10669	558	putative cation:proton antiport protein; Provision	95.31
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.31
PRK06182	273	short chain dehydrogenase; Validated	95.3
PRK06270	341	homoserine dehydrogenase; Provisional	95.29
PRK07825	273	short chain dehydrogenase; Provisional	95.28
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.28
PRK06114	254	short chain dehydrogenase; Provisional	95.27
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	95.26
PRK05855	582	short chain dehydrogenase; Validated	95.25
PRK12938	246	acetyacetyl-CoA reductase; Provisional	95.25
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.24
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.23
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.23
PRK07340	304	ornithine cyclodeaminase; Validated	95.21
PRK08628	258	short chain dehydrogenase; Provisional	95.21
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.2
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.19
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.16
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.15
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.15
PLN02240	352	UDP-glucose 4-epimerase	95.15
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	95.14
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	95.14
PRK07454	241	short chain dehydrogenase; Provisional	95.13
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	95.11
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	95.11
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	95.11
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.09
PRK08324	681	short chain dehydrogenase; Validated	95.08
PRK12828	239	short chain dehydrogenase; Provisional	95.06
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.06
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.05
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	95.03
PRK08374	336	homoserine dehydrogenase; Provisional	95.03
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.02
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	94.99
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	94.98
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.97
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.96
PRK06701	290	short chain dehydrogenase; Provisional	94.93
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	94.93
PRK07856	252	short chain dehydrogenase; Provisional	94.91
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.91
PRK07985	294	oxidoreductase; Provisional	94.91
PRK09072	263	short chain dehydrogenase; Provisional	94.91
PRK06545	359	prephenate dehydrogenase; Validated	94.89
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	94.88
PRK09135	249	pteridine reductase; Provisional	94.88
PRK08862	227	short chain dehydrogenase; Provisional	94.88
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.87
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.86
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.85
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.84
PRK08643	256	acetoin reductase; Validated	94.83
PRK11579	346	putative oxidoreductase; Provisional	94.82
TIGR02415	254	23BDH acetoin reductases. One member of this famil	94.82
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	94.77
PRK12827	249	short chain dehydrogenase; Provisional	94.77
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.76
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.76
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.75
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.75
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	94.75
PRK07102	243	short chain dehydrogenase; Provisional	94.74
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.73
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.73
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.73
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.71
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.69
CHL00194	317	ycf39 Ycf39; Provisional	94.69
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	94.65
PRK05650	270	short chain dehydrogenase; Provisional	94.59
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.59
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	94.59
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.58
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.57
PRK10538	248	malonic semialdehyde reductase; Provisional	94.56
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.54
PRK05599	246	hypothetical protein; Provisional	94.54
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	94.53
KOG1200|consensus	256		94.52
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	94.52
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.5
PRK08267	260	short chain dehydrogenase; Provisional	94.47
PLN02256	304	arogenate dehydrogenase	94.46
PLN02780	320	ketoreductase/ oxidoreductase	94.45
COG0281	432	SfcA Malic enzyme [Energy production and conversio	94.43
PRK10537	393	voltage-gated potassium channel; Provisional	94.39
PRK14030	445	glutamate dehydrogenase; Provisional	94.39
PRK14982	340	acyl-ACP reductase; Provisional	94.38
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	94.37
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.36
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.35
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	94.34
PRK12743	256	oxidoreductase; Provisional	94.33
PLN02688	266	pyrroline-5-carboxylate reductase	94.33
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.33
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	94.33
PRK06398	258	aldose dehydrogenase; Validated	94.32
PRK07417	279	arogenate dehydrogenase; Reviewed	94.31
PRK07069	251	short chain dehydrogenase; Validated	94.29
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	94.29
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	94.23
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.21
PRK06947	248	glucose-1-dehydrogenase; Provisional	94.2
PRK06392	326	homoserine dehydrogenase; Provisional	94.2
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.19
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.16
PRK08309	177	short chain dehydrogenase; Provisional	94.16
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.14
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.13
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	94.13
PRK05442	326	malate dehydrogenase; Provisional	94.11
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	94.06
PRK07201	657	short chain dehydrogenase; Provisional	94.04
PRK12742	237	oxidoreductase; Provisional	94.0
PRK00811	283	spermidine synthase; Provisional	93.98
KOG0069|consensus	336		93.98
PRK05884	223	short chain dehydrogenase; Provisional	93.98
PRK06932	314	glycerate dehydrogenase; Provisional	93.96
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.95
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.95
KOG2013|consensus	603		93.94
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.89
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	93.88
PLN02206	442	UDP-glucuronate decarboxylase	93.88
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	93.87
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	93.86
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.86
PRK07832	272	short chain dehydrogenase; Provisional	93.84
PRK08655	437	prephenate dehydrogenase; Provisional	93.83
PRK07775	274	short chain dehydrogenase; Provisional	93.81
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	93.8
PLN02740	381	Alcohol dehydrogenase-like	93.79
KOG0022|consensus	375		93.78
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.76
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.75
PRK08703	239	short chain dehydrogenase; Provisional	93.74
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.71
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.67
PRK12746	254	short chain dehydrogenase; Provisional	93.66
PRK06180	277	short chain dehydrogenase; Provisional	93.65
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	93.63
PRK05993	277	short chain dehydrogenase; Provisional	93.6
PRK06179	270	short chain dehydrogenase; Provisional	93.56
PLN03139	386	formate dehydrogenase; Provisional	93.54
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.52
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.52
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.51
PRK05693	274	short chain dehydrogenase; Provisional	93.49
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	93.48
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	93.48
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.48
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	93.4
PRK13529	563	malate dehydrogenase; Provisional	93.39
PRK07791	286	short chain dehydrogenase; Provisional	93.38
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.37
PRK06567	1028	putative bifunctional glutamate synthase subunit b	93.37
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.33
PRK06483	236	dihydromonapterin reductase; Provisional	93.32
PRK12935	247	acetoacetyl-CoA reductase; Provisional	93.3
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.3
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.29
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.29
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.25
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	93.21
PLN02852	491	ferredoxin-NADP+ reductase	93.21
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	93.2
PLN02896	353	cinnamyl-alcohol dehydrogenase	93.19
PRK08818	370	prephenate dehydrogenase; Provisional	93.19
PRK08177	225	short chain dehydrogenase; Provisional	93.17
PLN02214	342	cinnamoyl-CoA reductase	93.17
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	93.16
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	93.13
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.09
PRK06349	426	homoserine dehydrogenase; Provisional	93.06
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.06
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.04
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.04
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.01
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	93.0
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.99
PRK15059	292	tartronate semialdehyde reductase; Provisional	92.98
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	92.98
PRK06482	276	short chain dehydrogenase; Provisional	92.97
PRK06123	248	short chain dehydrogenase; Provisional	92.97
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	92.96
PRK06046	326	alanine dehydrogenase; Validated	92.95
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	92.92
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	92.92
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	92.92
PLN02712	667	arogenate dehydrogenase	92.91
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.91
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	92.9
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	92.9
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	92.89
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.89
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	92.88
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	92.83
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	92.83
PLN02712	667	arogenate dehydrogenase	92.81
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	92.81
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	92.79
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	92.79
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	92.79
PLN02477	410	glutamate dehydrogenase	92.78
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	92.78
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	92.77
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.76
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.75
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	92.75
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	92.74
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	92.72
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.71
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	92.7
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.7
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.68
PRK06523	260	short chain dehydrogenase; Provisional	92.68
COG0673	342	MviM Predicted dehydrogenases and related proteins	92.67
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	92.65
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	92.64
PRK05479	330	ketol-acid reductoisomerase; Provisional	92.62
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.57
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	92.56
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	92.54
PRK09134	258	short chain dehydrogenase; Provisional	92.52
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	92.51
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.49
PLN00106	323	malate dehydrogenase	92.48
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	92.47
KOG1208|consensus	314		92.47
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	92.46
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.45
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	92.45
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	92.43
PLN00112	444	malate dehydrogenase (NADP); Provisional	92.43

>KOG2336|consensus

Probab=100.00  E-value=7.4e-66  Score=450.25  Aligned_cols=288  Identities=69%  Similarity=1.129  Sum_probs=268.9

Q ss_pred             CccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH
Q psy2302           1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         1 ~~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~   80 (292)
                      |+|++||+++.++||+.+.|+|||.||+||.+|.+|.|+|+|++.|+|+|+||+.|+||.||+++..|.+|++++.+.|.
T Consensus        66 MALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLFf~P~QaGlsKv~AA~~TL~  145 (422)
T KOG2336|consen   66 MALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPDQAGLSKVDAAVQTLA  145 (422)
T ss_pred             HHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccccCcccccchHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHH---HHhcCCCCC-CCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEE
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGA---LAVQGSLTE-GPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHI  156 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~---~i~~~~~~~-~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v  156 (292)
                      .+||+|.++.|+..|+..++|+.   .|.++...- .+.|+|+.|+||+++|..+|.+|.+.+..|+.+|+++++++||+
T Consensus       146 ~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHI  225 (422)
T KOG2336|consen  146 EINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHI  225 (422)
T ss_pred             hcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCcccccccee
Confidence            99999999999999999888874   455555433 45999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCCCeeEEEeCCCCCeeeee
Q psy2302         157 QLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK  236 (292)
Q Consensus       157 ~~~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~~~~~~~d~~~~~~~~~~  236 (292)
                      +++.||.|+||.|..|..+++.+++++++++|+|++|+|++++++|+++++.++|||+.+|..+.|++||.+++.|.++.
T Consensus       226 Q~i~PGetACFACaPPlVVAs~IDErTLKReGVCAASLPTTMgvvAG~LVqN~LK~LLNFGeVS~YlGYNal~DFFP~ms  305 (422)
T KOG2336|consen  226 QLIVPGETACFACAPPLVVASGIDERTLKREGVCAASLPTTMGVVAGFLVQNSLKFLLNFGEVSPYLGYNALSDFFPTMS  305 (422)
T ss_pred             EEecCCccceecccCceeeecCcchhhhhhcceeeecCcchHHHHHHHHHHHHHHHHhhccccchhhcchhHHhhCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCccccchhhhcccCccchhh----hhcCcccccccCCCceeeEEEeec
Q psy2302         237 LKPNPSCDDSYCVQRQKEFNARPVEVKL----EAAKPEAQVVHADNDWGEYHYQVQ  288 (292)
Q Consensus       237 l~~~p~C~~~~C~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  288 (292)
                      ++|||+|.++.|-.+|.||..+-+..++    ..+.-++.|+|.||+|||++++++
T Consensus       306 mkPNPqCdd~~Cl~rQkEy~~kvaa~pk~~~ie~~~i~E~~lHedNEWgIelV~e~  361 (422)
T KOG2336|consen  306 MKPNPQCDDRNCLERQKEYMLKVAAKPKMEAIEETTIDEEPLHEDNEWGIELVDEE  361 (422)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhcCCchhhhcccccccccccccccccceeeccc
Confidence            9999999999999999999865443333    333345889999999999999965

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=3.4e-50  Score=358.77  Aligned_cols=224  Identities=30%  Similarity=0.551  Sum_probs=202.0

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|++||. +.|++|+++||+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus        18 ~l~~~g~-~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~   96 (245)
T PRK05690         18 ILRGFDF-DGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALA   96 (245)
T ss_pred             cchhcCH-HHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHH
Confidence            4678999 9999999999999999999999999999999999999999999999999987 5899999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||+++++.++..+++ +++.+++       +++|+||+|+|++++|.++|++|+++++||+.+++.+  +.|++.++.
T Consensus        97 ~lnp~v~i~~~~~~i~~-~~~~~~~-------~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g--~~G~v~~~~  166 (245)
T PRK05690         97 RINPHIAIETINARLDD-DELAALI-------AGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIR--MEGQVTVFT  166 (245)
T ss_pred             HHCCCCEEEEEeccCCH-HHHHHHH-------hcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeecc--CCceEEEEe
Confidence            99999999999999886 6666665       7899999999999999999999999999999988764  789999998


Q ss_pred             CCC-CCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302         161 PGE-SACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       161 p~~-t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l  237 (292)
                      |+. ++||+|+++......   ..|...    ++++|+++++|+++|+|++|+|+|.+++  ++++.||.++++|+.+++
T Consensus       167 ~~~~~~c~~c~~~~~~~~~---~~~~~~----gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~  239 (245)
T PRK05690        167 YQDDEPCYRCLSRLFGENA---LTCVEA----GVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKL  239 (245)
T ss_pred             cCCCCceeeeccCCCCCCC---CCcccC----CccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEc
Confidence            875 899999998643221   123333    4488999999999999999999998876  799999999999999999


Q ss_pred             cCCCCC
Q psy2302         238 KPNPSC  243 (292)
Q Consensus       238 ~~~p~C  243 (292)
                      .++|+|
T Consensus       240 ~~~~~C  245 (245)
T PRK05690        240 KRDPGC  245 (245)
T ss_pred             CCCcCC
Confidence            999998

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=6.4e-50  Score=355.71  Aligned_cols=227  Identities=28%  Similarity=0.522  Sum_probs=200.6

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~   80 (292)
                      .|..||. +.|++|+++||+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+| .++|+|++|+++++++|+
T Consensus        10 ~l~~~g~-~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~   88 (240)
T TIGR02355        10 ILRGFDF-DGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALT   88 (240)
T ss_pred             ecccCCH-HHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHH
Confidence            4666788 99999999999999999999999999999999999999999999999999875 679999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||+++++.++.+++. +++.+++       .++|+||+|+|++++|.++|++|+++++||+.+++.+  +.|++.++.
T Consensus        89 ~inp~v~i~~~~~~i~~-~~~~~~~-------~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g--~~G~v~~~~  158 (240)
T TIGR02355        89 QINPHIAINPINAKLDD-AELAALI-------AEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIR--MEGQVSVFT  158 (240)
T ss_pred             HHCCCcEEEEEeccCCH-HHHHHHh-------hcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc--cEeEEEEEe
Confidence            99999999999999886 6676666       7899999999999999999999999999999987764  789887665


Q ss_pred             -CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302         161 -PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       161 -p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l  237 (292)
                       ++.++||+|+++......   ..+..    .+.++|+++++|+++|+|++|+|+|.+++  ++++.||+.+++|+++++
T Consensus       159 ~~~~~~c~~C~~~~~~~~~---~~~~~----~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~  231 (240)
T TIGR02355       159 YQDGEPCYRCLSRLFGENA---LSCVE----AGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKL  231 (240)
T ss_pred             cCCCCCccccccccCCCCC---CCccc----cCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEec
Confidence             446899999976432211   12222    24589999999999999999999998876  799999999999999999


Q ss_pred             cCCCCCCCccc
Q psy2302         238 KPNPSCDDSYC  248 (292)
Q Consensus       238 ~~~p~C~~~~C  248 (292)
                      .++|+|+  +|
T Consensus       232 ~~~~~C~--~C  240 (240)
T TIGR02355       232 PKNPTCP--VC  240 (240)
T ss_pred             cCCccCC--CC
Confidence            9999999  78

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=6e-50  Score=378.91  Aligned_cols=232  Identities=24%  Similarity=0.390  Sum_probs=209.0

Q ss_pred             CccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHH
Q psy2302           1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITL   79 (292)
Q Consensus         1 ~~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l   79 (292)
                      +.|++||. +.|++|+++||+|||+||+||+++++|+++|||+|+|+|+|+|+.+||+||+ |+++|+|++|+++++++|
T Consensus        23 ~~l~~~g~-~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l  101 (390)
T PRK07411         23 LILPEVGL-EGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRI  101 (390)
T ss_pred             echhhcCH-HHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHH
Confidence            35778999 9999999999999999999999999999999999999999999999999987 589999999999999999


Q ss_pred             HhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEee
Q psy2302          80 QNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLI  159 (292)
Q Consensus        80 ~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~  159 (292)
                      +++||+++|+++..+++. ++..+++       .++|+||+|+|++++|.+||++|++.++||+++++.+  +.|++.++
T Consensus       102 ~~~np~v~v~~~~~~~~~-~~~~~~~-------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g--~~g~~~v~  171 (390)
T PRK07411        102 LEINPYCQVDLYETRLSS-ENALDIL-------APYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFR--FEGQATVF  171 (390)
T ss_pred             HHHCCCCeEEEEecccCH-HhHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEcc--CEEEEEEE
Confidence            999999999999999986 5666665       6899999999999999999999999999999998875  89999988


Q ss_pred             cCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302         160 IPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       160 ~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l  237 (292)
                      .|+.++||+|+||..+... ....|...|+    ++++++++|+++|+|+||+|+|.+++  ++++.||.++++|+.+++
T Consensus       172 ~~~~~~c~~c~~~~~~~~~-~~~~c~~~gv----lg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~  246 (390)
T PRK07411        172 NYEGGPNYRDLYPEPPPPG-MVPSCAEGGV----LGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKL  246 (390)
T ss_pred             CCCCCCChHHhcCCCCCcc-cCCCCccCCc----CcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEec
Confidence            8888999999998632221 2234555555    89999999999999999999998876  899999999999999999


Q ss_pred             cCCCCCCCccccc
Q psy2302         238 KPNPSCDDSYCVQ  250 (292)
Q Consensus       238 ~~~p~C~~~~C~~  250 (292)
                      .++|+|+  .|..
T Consensus       247 ~~~~~c~--~i~~  257 (390)
T PRK07411        247 RPNPERP--VIEK  257 (390)
T ss_pred             cCCCCCC--cccc
Confidence            9999999  6654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=4.8e-49  Score=368.73  Aligned_cols=227  Identities=23%  Similarity=0.355  Sum_probs=205.3

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|+.||. +.|++|+++||+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus        14 ~l~~~g~-~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~   92 (355)
T PRK05597         14 MLGEIGQ-QGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAML   92 (355)
T ss_pred             chhhcCH-HHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHH
Confidence            4677999 9999999999999999999999999999999999999999999999999987 5899999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||++++++++.+++. ++..+++       .++|+||+|+|++.+|.++|++|+++++|||.+++.+  +.|++.++.
T Consensus        93 ~~np~v~v~~~~~~i~~-~~~~~~~-------~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g--~~g~v~~~~  162 (355)
T PRK05597         93 ALNPDVKVTVSVRRLTW-SNALDEL-------RDADVILDGSDNFDTRHLASWAAARLGIPHVWASILG--FDAQLSVFH  162 (355)
T ss_pred             HHCCCcEEEEEEeecCH-HHHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEec--CeEEEEEEc
Confidence            99999999999999986 6666665       6899999999999999999999999999999998874  899999988


Q ss_pred             CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeecc
Q psy2302         161 PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKLK  238 (292)
Q Consensus       161 p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l~  238 (292)
                      |+.++||+|+++...... +...|...|+    ++|+++++|+++|+|++|+|+|.+++  ++++.||.++++|+.+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~-~~~~c~~~gv----~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~  237 (355)
T PRK05597        163 AGHGPIYEDLFPTPPPPG-SVPSCSQAGV----LGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVV  237 (355)
T ss_pred             CCCCCCHHHhCCCCCCcc-CCCCccccCc----chhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEecc
Confidence            999999999998642211 2234444444    89999999999999999999998876  7999999999999999999


Q ss_pred             CCCCCC
Q psy2302         239 PNPSCD  244 (292)
Q Consensus       239 ~~p~C~  244 (292)
                      ++|.|.
T Consensus       238 ~~~~~~  243 (355)
T PRK05597        238 GNPAVL  243 (355)
T ss_pred             CCCCCc
Confidence            999995

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=1e-48  Score=363.72  Aligned_cols=230  Identities=29%  Similarity=0.473  Sum_probs=204.9

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCC--ChHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCG--LSKVEAARIT   78 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG--~~Ka~a~~~~   78 (292)
                      .++.||. +.|++|++++|+|||+||+|+++|++|+++|||+|+|+|+|.||++||+||+ |+++|+|  ++|+++++++
T Consensus        10 ~~~~~G~-~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~   88 (338)
T PRK12475         10 LFSGIGE-EGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEH   88 (338)
T ss_pred             chhhcCH-HHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHH
Confidence            3567999 9999999999999999999999999999999999999999999999999976 6888875  8999999999


Q ss_pred             HHhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302          79 LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQL  158 (292)
Q Consensus        79 l~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~  158 (292)
                      |+++||+++++++..+++. +++++++       .++|+||+|+|++++|.+||++|+++++|||++++.+  +.|++.+
T Consensus        89 l~~inp~v~i~~~~~~~~~-~~~~~~~-------~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g--~~G~~~~  158 (338)
T PRK12475         89 LRKINSEVEIVPVVTDVTV-EELEELV-------KEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVG--SYGVTYT  158 (338)
T ss_pred             HHHHCCCcEEEEEeccCCH-HHHHHHh-------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc--cEEEEEE
Confidence            9999999999999988875 6777765       7899999999999999999999999999999998864  7899999


Q ss_pred             ecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeee
Q psy2302         159 IIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMK  236 (292)
Q Consensus       159 ~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~  236 (292)
                      +.|+.+|||+|+++..+...   .+|...|    .++|+++++|+++|.|++|+|+|.++.  ++++.||.++++|+.++
T Consensus       159 ~~P~~tpC~~Cl~~~~p~~~---~~c~~~G----vl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~  231 (338)
T PRK12475        159 IIPGKTPCLRCLMEHVPVGG---ATCDTAG----IIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIK  231 (338)
T ss_pred             ECCCCCCCHHHhcCCCCCCC---CCCccCC----cCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEE
Confidence            99999999999998643221   2344444    378899999999999999999998765  79999999999999999


Q ss_pred             ccC--CCCCCCccccch
Q psy2302         237 LKP--NPSCDDSYCVQR  251 (292)
Q Consensus       237 l~~--~p~C~~~~C~~~  251 (292)
                      +.+  +|+||  +||.+
T Consensus       232 ~~~~k~p~Cp--~Cg~~  246 (338)
T PRK12475        232 VNKQKKDTCP--SCGLT  246 (338)
T ss_pred             eccCCCCCCC--cCCCC
Confidence            955  99999  89974

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=100.00  E-value=5.2e-48  Score=359.11  Aligned_cols=230  Identities=29%  Similarity=0.515  Sum_probs=205.2

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCC--CChHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQC--GLSKVEAARIT   78 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~di--G~~Ka~a~~~~   78 (292)
                      .|+.||. ++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+++||+||+ |.++|+  |++|+++++++
T Consensus        10 ~l~~~G~-~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~   88 (339)
T PRK07688         10 LFSPIGE-EGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKR   88 (339)
T ss_pred             chhhcCH-HHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHH
Confidence            4677999 9999999999999999999999999999999999999999999999999986 688999  46999999999


Q ss_pred             HHhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302          79 LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQL  158 (292)
Q Consensus        79 l~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~  158 (292)
                      |+++||+++++.+..+++. +++.+++       .++|+||+|+||+++|.++|++|.++++|||++++.+  +.|++.+
T Consensus        89 l~~inp~v~v~~~~~~~~~-~~~~~~~-------~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g--~~G~~~~  158 (339)
T PRK07688         89 LEEINSDVRVEAIVQDVTA-EELEELV-------TGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVG--SYGLSYT  158 (339)
T ss_pred             HHHHCCCcEEEEEeccCCH-HHHHHHH-------cCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeee--eeeEEEE
Confidence            9999999999999988876 6777766       7899999999999999999999999999999998764  7899888


Q ss_pred             ecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeee
Q psy2302         159 IIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMK  236 (292)
Q Consensus       159 ~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~  236 (292)
                      +.|+.++||+|+++..+...   .+|...|+    ++|+++++|+++|.|++|+|+|.++.  ++++.||.++++|+.++
T Consensus       159 ~~p~~~pC~~Cl~~~~~~~~---~~c~~~gv----~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~  231 (339)
T PRK07688        159 IIPGKTPCLRCLLQSIPLGG---ATCDTAGI----ISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMN  231 (339)
T ss_pred             ECCCCCCCeEeecCCCCCCC---CCCccCCc----ccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEE
Confidence            89999999999998653322   23444444    88999999999999999999998765  79999999999999987


Q ss_pred             cc--CCCCCCCccccch
Q psy2302         237 LK--PNPSCDDSYCVQR  251 (292)
Q Consensus       237 l~--~~p~C~~~~C~~~  251 (292)
                      +.  ++|+||  .|+.+
T Consensus       232 ~~~~~~~~Cp--~Cg~~  246 (339)
T PRK07688        232 VQKLKKDNCP--SCGEK  246 (339)
T ss_pred             ecCCCCCCCC--CCCCC
Confidence            64  689999  89974

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=4.4e-48  Score=366.73  Aligned_cols=227  Identities=24%  Similarity=0.405  Sum_probs=203.5

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|++||. +.|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus        28 ~l~~~g~-~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~  106 (392)
T PRK07878         28 IIPDVGV-DGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIV  106 (392)
T ss_pred             chhhcCH-HHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHH
Confidence            4677999 9999999999999999999999999999999999999999999999999987 5899999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||+++++.+..+++. ++..+++       .++|+||+|+|++.+|.++|++|+++++|||.+++.+  +.|++.++.
T Consensus       107 ~~np~v~i~~~~~~i~~-~~~~~~~-------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g--~~G~v~~~~  176 (392)
T PRK07878        107 EINPLVNVRLHEFRLDP-SNAVELF-------SQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYR--FEGQASVFW  176 (392)
T ss_pred             HhCCCcEEEEEeccCCh-hHHHHHH-------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc--CEEEEEEEe
Confidence            99999999999999886 5666665       6899999999999999999999999999999998874  899998776


Q ss_pred             C----CCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeee
Q psy2302         161 P----GESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPK  234 (292)
Q Consensus       161 p----~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~  234 (292)
                      +    +.++||+|+++...... ....|...|+    ++++++++|+++|+|+||+|+|.+++  ++++.||.++++|+.
T Consensus       177 ~~~~~~~~~c~~c~~~~~~~~~-~~~~~~~~gv----~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~  251 (392)
T PRK07878        177 EDAPDGLGLNYRDLYPEPPPPG-MVPSCAEGGV----LGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRT  251 (392)
T ss_pred             cCCCCCCCCeeeeecCCCCCcc-CCCCCccCCc----cchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceee
Confidence            3    47899999997532221 2234555554    89999999999999999999998876  899999999999999


Q ss_pred             eeccCCCCCC
Q psy2302         235 MKLKPNPSCD  244 (292)
Q Consensus       235 ~~l~~~p~C~  244 (292)
                      ++|.++|+|+
T Consensus       252 ~~~~~~~~C~  261 (392)
T PRK07878        252 IKIRKDPSTP  261 (392)
T ss_pred             EeeccCCCCC
Confidence            9999999997

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=5e-48  Score=362.89  Aligned_cols=232  Identities=26%  Similarity=0.416  Sum_probs=208.6

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|+.||. +.|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus        27 ~l~~~g~-~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~  105 (370)
T PRK05600         27 ALPGFGI-EQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLK  105 (370)
T ss_pred             chhhhCH-HHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHH
Confidence            4677999 9999999999999999999999999999999999999999999999999986 7899999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||+++++.+..+++. +++.+++       .++|+||+|+|++++|.+||++|+++++|||.+++.+  +.|++.++.
T Consensus       106 ~~np~v~i~~~~~~i~~-~~~~~~~-------~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g--~~G~v~v~~  175 (370)
T PRK05600        106 EIQPDIRVNALRERLTA-ENAVELL-------NGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLR--FHGELAVFN  175 (370)
T ss_pred             HHCCCCeeEEeeeecCH-HHHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEec--CEEEEEEEe
Confidence            99999999999999985 6777776       6899999999999999999999999999999998874  899999887


Q ss_pred             CC---CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeee
Q psy2302         161 PG---ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKM  235 (292)
Q Consensus       161 p~---~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~  235 (292)
                      |+   .++||+|+||..+..+ ....|...|+    ++++.+++|+++|+|++|+|+|.+++  ++++.||.++++|+.+
T Consensus       176 ~~~~~~~~~~~~l~~~~~~~~-~~~~c~~~gv----lg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~  250 (370)
T PRK05600        176 SGPDHRGVGLRDLFPEQPSGD-SIPDCATAGV----LGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSF  250 (370)
T ss_pred             cCCCCCCCCcHhhCCCCCccc-cCCCCccCCc----chhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEE
Confidence            76   3789999998643221 2233444444    89999999999999999999999776  7999999999999999


Q ss_pred             eccCCCCCCCccccch
Q psy2302         236 KLKPNPSCDDSYCVQR  251 (292)
Q Consensus       236 ~l~~~p~C~~~~C~~~  251 (292)
                      ++.++|+|+  .|...
T Consensus       251 ~~~~~~~c~--~~~~~  264 (370)
T PRK05600        251 RVGADPARP--LVTRL  264 (370)
T ss_pred             EecCCCCCC--ccccc
Confidence            999999999  78865

>KOG2017|consensus

Probab=100.00  E-value=4.2e-49  Score=353.54  Aligned_cols=234  Identities=25%  Similarity=0.472  Sum_probs=214.7

Q ss_pred             CccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHH
Q psy2302           1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITL   79 (292)
Q Consensus         1 ~~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l   79 (292)
                      |+|+++|+ .+|.+|++++|+||||||+||..+++|+.+|||+|.|||+|.||.+||+||. +++.++|+.|+++|+..+
T Consensus        51 lilpe~gV-~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~l  129 (427)
T KOG2017|consen   51 LILPEFGV-HGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFL  129 (427)
T ss_pred             eecccccc-ccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHH
Confidence            68999998 9999999999999999999999999999999999999999999999999986 789999999999999999


Q ss_pred             HhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEee
Q psy2302          80 QNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLI  159 (292)
Q Consensus        80 ~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~  159 (292)
                      +++||+++++.|+..++. +|..+++       ++||+|+|||||+.+|++|++.|+..|+|++.++..  .|.||..++
T Consensus       130 r~lNs~v~v~~y~~~L~~-sNa~~Ii-------~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaL--r~EGQLtvY  199 (427)
T KOG2017|consen  130 RRLNSHVEVQTYNEFLSS-SNAFDII-------KQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSAL--RWEGQLTVY  199 (427)
T ss_pred             HhcCCCceeeechhhccc-hhHHHHh-------hccceEEEcCCCccchhhhhhHHHHcCCcccccccc--cccceeEEe
Confidence            999999999999999987 7888877       799999999999999999999999999999998776  489999988


Q ss_pred             cCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302         160 IPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       160 ~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l  237 (292)
                      ....+|||+|+||..++++ ..-+|...|+    +++..+++++|+|.|++|++++.+++  ++++.||.++..|+++++
T Consensus       200 ny~~GPCYRClFP~Ppp~~-~vt~C~dgGV----lGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~irl  274 (427)
T KOG2017|consen  200 NYNNGPCYRCLFPNPPPPE-AVTNCADGGV----LGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIRL  274 (427)
T ss_pred             ecCCCceeeecCCCCcChH-HhcccccCce----eecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEEe
Confidence            8888999999999765433 2345666666    88999999999999999999999876  799999999999999999


Q ss_pred             -cCCCCCCCccccchh
Q psy2302         238 -KPNPSCDDSYCVQRQ  252 (292)
Q Consensus       238 -~~~p~C~~~~C~~~~  252 (292)
                       .|.++|.  +||+..
T Consensus       275 R~r~~~C~--~Cg~n~  288 (427)
T KOG2017|consen  275 RSRRPKCA--VCGKNP  288 (427)
T ss_pred             ccCCCCCc--ccCCCC
Confidence             4599999  899754

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=1.7e-47  Score=344.62  Aligned_cols=223  Identities=25%  Similarity=0.350  Sum_probs=198.4

Q ss_pred             cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhC
Q psy2302           5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus         5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      .+|. +.|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|++|||+||+ |+.+|+|++|+++++++|+++|
T Consensus        16 ~iG~-e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN   94 (287)
T PRK08223         16 WITP-TEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN   94 (287)
T ss_pred             hcCH-HHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC
Confidence            3788 9999999999999999999999999999999999999999999999999987 6899999999999999999999


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP  161 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p  161 (292)
                      |+++|++++..++. ++..+++       +++|+||||+|++  ++|.++|++|+++++|||.+++.+  +.|++.++.|
T Consensus        95 P~v~V~~~~~~l~~-~n~~~ll-------~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g--~~gqv~v~~p  164 (287)
T PRK08223         95 PELEIRAFPEGIGK-ENADAFL-------DGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG--MGTALLVFDP  164 (287)
T ss_pred             CCCEEEEEecccCc-cCHHHHH-------hCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC--CeEEEEEEcC
Confidence            99999999999986 7887776       7899999999986  899999999999999999998864  8999999988


Q ss_pred             CCCCccCCCCCC---ccCCC-------cchhhhhhcCcc------------CCCCchHHHHHHHHHHHHHHHHHhCCCCC
Q psy2302         162 GESACFACAPPL---IVASS-------IDEKTLKKDGVC------------AASLPTTMGIVAGFLVQNALKKLLKFGEV  219 (292)
Q Consensus       162 ~~t~C~~C~~~~---~~~~~-------~~~~~~~~~~~~------------~~s~~~~~~ivasl~a~e~lk~l~g~~~~  219 (292)
                      + ++||+|+||.   .++..       ...++|...|+.            .|+.+++.+++|+++|.|++|+|+|.+++
T Consensus       165 ~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~  243 (287)
T PRK08223        165 G-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILLGRGRV  243 (287)
T ss_pred             C-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHhCCCCc
Confidence            5 7999999986   22210       123466667765            46668999999999999999999998886


Q ss_pred             ---CeeEEEeCCCCCeeeeeccC
Q psy2302         220 ---SWYLGYSALTDFFPKMKLKP  239 (292)
Q Consensus       220 ---~~~~~~d~~~~~~~~~~l~~  239 (292)
                         ++++.||.++++|++..++.
T Consensus       244 ~~~~~~~~~d~~~~~~~~~~~~~  266 (287)
T PRK08223        244 YAAPWFHQFDAYRSRYVRTWRPG  266 (287)
T ss_pred             CCCCeEEEEEcCCceEEEEEecC
Confidence               58999999999999887753

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=3.3e-47  Score=359.42  Aligned_cols=232  Identities=30%  Similarity=0.513  Sum_probs=207.3

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|+.||. +.|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus       121 ~l~~~g~-~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~  199 (376)
T PRK08762        121 RLPEVGE-EGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLA  199 (376)
T ss_pred             chhhcCH-HHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHH
Confidence            3567999 9999999999999999999999999999999999999999999999999987 5899999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||+++++.+...++. +++.+++       .++|+||+|+|++++|.++|++|+++++|||++++.+  +.|++.++.
T Consensus       200 ~~np~v~v~~~~~~~~~-~~~~~~~-------~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g--~~g~v~~~~  269 (376)
T PRK08762        200 ALNPDVQVEAVQERVTS-DNVEALL-------QDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFR--FEGQVSVFD  269 (376)
T ss_pred             HHCCCCEEEEEeccCCh-HHHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc--CEEEEEEEe
Confidence            99999999999988876 6676666       6899999999999999999999999999999998874  799999998


Q ss_pred             CCC----CCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeee
Q psy2302         161 PGE----SACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPK  234 (292)
Q Consensus       161 p~~----t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~  234 (292)
                      |+.    ++||+|+++...... ....|...|+    ++++++++|+|+|+|++|+|+|.+.+  ++++.||.++++|+.
T Consensus       270 p~~~~~~~~c~~c~~~~~~~~~-~~~~~~~~gv----~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~  344 (376)
T PRK08762        270 AGRQRGQAPCYRCLFPEPPPPE-LAPSCAEAGV----LGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRE  344 (376)
T ss_pred             CCCCCCCCCCHhhcCCCCCCcc-cCCCCccCCc----chhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEE
Confidence            876    899999997532211 1223444444    88999999999999999999998776  799999999999999


Q ss_pred             eeccCCCCCCCccccch
Q psy2302         235 MKLKPNPSCDDSYCVQR  251 (292)
Q Consensus       235 ~~l~~~p~C~~~~C~~~  251 (292)
                      +++.++|+|+  +|+.+
T Consensus       345 ~~~~~~~~C~--~C~~~  359 (376)
T PRK08762        345 LRLPPDPHCP--VCAPG  359 (376)
T ss_pred             EeccCCCCCC--CCCCC
Confidence            9999999999  89874

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=8.3e-47  Score=333.95  Aligned_cols=219  Identities=37%  Similarity=0.567  Sum_probs=195.1

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .+++||. +.|++|+++||+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||+ |.++|+|++|+++++++|+
T Consensus         7 ~l~~~g~-~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~   85 (228)
T cd00757           7 LLPEIGE-EGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLR   85 (228)
T ss_pred             chhhcCH-HHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHH
Confidence            3567999 9999999999999999999999999999999999999999999999999987 5778999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||+++++.++.+++. +++.+++       .++|+||+|+|++.+|.++|++|+++++|||++++.+  +.|++.++.
T Consensus        86 ~~np~~~i~~~~~~i~~-~~~~~~~-------~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g--~~g~v~~~~  155 (228)
T cd00757          86 AINPDVEIEAYNERLDA-ENAEELI-------AGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLG--FEGQVTVFI  155 (228)
T ss_pred             HhCCCCEEEEecceeCH-HHHHHHH-------hCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc--CEEEEEEEC
Confidence            99999999999998865 6776665       6799999999999999999999999999999998874  799999999


Q ss_pred             CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302         161 PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       161 p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l  237 (292)
                      |+.++||.|.++.....+      .....+.++++|.++++|+|+|+|++|+|+|.+++  ++++.||.+++.|+++++
T Consensus       156 p~~~~c~~c~~~~~~~~~------~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~  228 (228)
T cd00757         156 PGEGPCYRCLFPEPPPPG------VPSCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL  228 (228)
T ss_pred             CCCCCCccccCCCCCCCC------CCccccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence            999999999987643211      11112356799999999999999999999998765  899999999999998764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-45  Score=325.58  Aligned_cols=212  Identities=26%  Similarity=0.441  Sum_probs=191.1

Q ss_pred             cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCC-hHHHHHHHHHHhh
Q psy2302           5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGL-SKVEAARITLQNI   82 (292)
Q Consensus         5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~-~Ka~a~~~~l~~~   82 (292)
                      .||. +.|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||+ |.++|+|+ +|+++++++|+++
T Consensus        16 ~~g~-~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~   94 (231)
T PRK08328         16 IFGV-EGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF   94 (231)
T ss_pred             hcCH-HHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh
Confidence            3899 9999999999999999999999999999999999999999999999999987 57899999 6999999999999


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCC
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPG  162 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~  162 (292)
                      ||+++++.+...++. +++.+++       +++|+||+|+|++.+|.+++++|+++++|+|++++.+  +.|++.++.|+
T Consensus        95 np~v~v~~~~~~~~~-~~~~~~l-------~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g--~~G~v~~~~p~  164 (231)
T PRK08328         95 NSDIKIETFVGRLSE-ENIDEVL-------KGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEG--TYGQVTTIVPG  164 (231)
T ss_pred             CCCCEEEEEeccCCH-HHHHHHH-------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeecc--CEEEEEEECCC
Confidence            999999999988875 6776665       6899999999999999999999999999999999874  89999999999


Q ss_pred             CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302         163 ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       163 ~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l  237 (292)
                      .++||+|+++....      ....    .+.++|+++++|+++|+|++|+|+|.+++  ++++.+|.+++.|+.+++
T Consensus       165 ~~~c~~~~~~~~~~------~~~~----~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~  231 (231)
T PRK08328        165 KTKRLREIFPKVKK------KKGK----FPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL  231 (231)
T ss_pred             CCCCHHHhCCCCCC------cccc----CCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence            99999999975321      0111    24589999999999999999999998876  799999999999988764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=4e-44  Score=311.20  Aligned_cols=194  Identities=31%  Similarity=0.562  Sum_probs=173.4

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|+.||. +.|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||+ |+++|+|++|+++++++|+
T Consensus         7 ~l~~~g~-~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~   85 (202)
T TIGR02356         7 LLPDIGE-EGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLR   85 (202)
T ss_pred             cchhcCH-HHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHH
Confidence            4677999 9999999999999999999999999999999999999999999999999986 7999999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||+++++.++..+++ +++.+++       .++|+||+|+|++++|.++|++|+++++|||.+++.+  +.|++.++.
T Consensus        86 ~~np~v~i~~~~~~i~~-~~~~~~~-------~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g--~~G~~~~~~  155 (202)
T TIGR02356        86 ELNSDIQVTALKERVTA-ENLELLI-------NNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVG--FGGQLMVFD  155 (202)
T ss_pred             HhCCCCEEEEehhcCCH-HHHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc--CeEEEEEEe
Confidence            99999999999998876 6666665       6899999999999999999999999999999998864  799999999


Q ss_pred             CC-CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHH
Q psy2302         161 PG-ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKL  213 (292)
Q Consensus       161 p~-~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l  213 (292)
                      |+ .++||+|+++...  . ..+.+...    +.++|+++++|+|+|+|++|+|
T Consensus       156 p~~~~~c~~c~~~~~~--~-~~~~~~~~----~~~~~~~~~~~~~~a~e~~k~l  202 (202)
T TIGR02356       156 PGGEGPCLRCLFPDIA--D-TGPSCATA----GVIGPVVGVIGSLQALEALKLL  202 (202)
T ss_pred             CCCCCCChhhcCCCCc--c-cCCCCccC----CccchHHHHHHHHHHHHHHHhC
Confidence            98 7999999998621  1 11223333    3489999999999999999985

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=100.00  E-value=1.7e-42  Score=319.33  Aligned_cols=220  Identities=14%  Similarity=0.203  Sum_probs=188.6

Q ss_pred             cccc-CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKR-MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~-~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|+. +|..+.|++|++++|+   +||+|+.++.+|++ |||+|+|+|+|.|+.|||+ .+|+++|+|++|+++++++|.
T Consensus        60 ~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~-~L~~~~diG~~K~~~a~~~L~  134 (318)
T TIGR03603        60 TLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI-DLYSKEFILKKDIRDLTSNLD  134 (318)
T ss_pred             cCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH-HHhChhhcCcHHHHHHHHHHH
Confidence            4555 5764689999999999   99999999999999 9999999999999999999 779999999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHH--HHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMT--INMACNQLGQTWFESGVSENAVSGHIQL  158 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~--in~~~~~~~~p~i~~~~~~~~~~G~v~~  158 (292)
                      ++||+++++..          .+++       .++|+||||+|++.+|.+  +|++|.++++|||.+++.+  +.|++..
T Consensus       135 ~lnp~v~i~~~----------~~li-------~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g--~~Gqv~~  195 (318)
T TIGR03603       135 ALELTKNVDEL----------KDLL-------KDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDG--PFVFITC  195 (318)
T ss_pred             HhCCCCEEeeH----------HHHh-------CCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEcc--CEEEEEE
Confidence            99999998642          2333       789999999999999965  9999999999999998874  8999887


Q ss_pred             ecCCCCCccCCCCCCccCCC-------------cchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC---Cee
Q psy2302         159 IIPGESACFACAPPLIVASS-------------IDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV---SWY  222 (292)
Q Consensus       159 ~~p~~t~C~~C~~~~~~~~~-------------~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~---~~~  222 (292)
                      +.|+.||||+|+++......             .....+..    ++.++|+++++|+|+|.||+ ++++.+.+   +++
T Consensus       196 ~~P~~t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~l  270 (318)
T TIGR03603       196 TLPPETGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVST----AELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRL  270 (318)
T ss_pred             EeCCCCCcHHHccchhhcccccccccccccccCCCCCCCcc----CCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeE
Confidence            77999999999987321110             00111222    23488999999999999999 99998774   799


Q ss_pred             EEEeCCCCCeeeeeccCCCCCCCccccchh
Q psy2302         223 LGYSALTDFFPKMKLKPNPSCDDSYCVQRQ  252 (292)
Q Consensus       223 ~~~d~~~~~~~~~~l~~~p~C~~~~C~~~~  252 (292)
                      +.||..++.++.+++.++|+||  .||...
T Consensus       271 l~id~~t~~~~~~~l~k~p~Cp--~CG~~~  298 (318)
T TIGR03603       271 LSINLPTLEIQFQDILKQSCCS--TCGTFN  298 (318)
T ss_pred             EEEECCCCeEEEEecCCCCCCc--ccCCcc
Confidence            9999999999999999999999  898764

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=100.00  E-value=1.8e-41  Score=304.47  Aligned_cols=231  Identities=34%  Similarity=0.584  Sum_probs=206.7

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|..+|. ++|++|+++||+|+|+||+|++++++|+++|||+++|+|+|+|+.+||+||+ |+.+|+|++|+++++++++
T Consensus        16 ~l~~~~~-~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~   94 (254)
T COG0476          16 LLPGIGG-EGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALR   94 (254)
T ss_pred             eecccCH-HHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHH
Confidence            4556777 5699999999999999999999999999999999999999999999999976 7999999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||.++++++...++. +++.+++       ..+|+|++++||+.+|..+|++|+++++||++++..+  +.|++.++.
T Consensus        95 ~ln~~v~v~~~~~~l~~-~~~~~~~-------~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~--~~g~~~~~~  164 (254)
T COG0476          95 KLNPLVEVVAYLERLDE-ENAEELI-------AQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIG--FEGQVTVII  164 (254)
T ss_pred             HhCCCCeEEEeecccCh-hhHHHHh-------ccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeecc--ceEEEEEEe
Confidence            99999999999999886 6666665       7999999999999999999999999999999998874  899999999


Q ss_pred             CC-CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCC-CC--CeeEEEeCCCC-Ceeee
Q psy2302         161 PG-ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFG-EV--SWYLGYSALTD-FFPKM  235 (292)
Q Consensus       161 p~-~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~-~~--~~~~~~d~~~~-~~~~~  235 (292)
                      |+ .++||+|+++..+........|...++    +.+..+.++++++.|++|++++.+ .+  ++.+.||.+.+ .|+++
T Consensus       165 ~~~~~~c~~~~~~~~~~~~~~~~~c~~~gv----~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~  240 (254)
T COG0476         165 PGDKTPCYRCLFPEKPPPGLVPTSCDEAGV----LGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTL  240 (254)
T ss_pred             cCCCCCcccccCCCCCCccccccccccCCc----cccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhh
Confidence            99 599999999876553322223666666    778889999999999999999997 43  79999999998 89999


Q ss_pred             eccCCCC-CCCcccc
Q psy2302         236 KLKPNPS-CDDSYCV  249 (292)
Q Consensus       236 ~l~~~p~-C~~~~C~  249 (292)
                      .+.+++. |+  +|+
T Consensus       241 ~~~~~~~~~~--~c~  253 (254)
T COG0476         241 KLRRRPISCP--VCG  253 (254)
T ss_pred             hcccCCCCCC--cCC
Confidence            9999888 99  897

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=100.00  E-value=3e-40  Score=299.37  Aligned_cols=218  Identities=25%  Similarity=0.421  Sum_probs=182.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ||+|+|+||+||+++++|+++|||+|+|+|+|+|+.+||+||| |+.+|+|++|+++++++|+++||+++++++..++.+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            6999999999999999999999999999999999999999987 699999999999999999999999999999988875


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh--------CCceeecCcccceeEEEEEeecCCCCCccCC
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL--------GQTWFESGVSENAVSGHIQLIIPGESACFAC  169 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~--------~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~C  169 (292)
                       .+ .+++       +++|+||+|+|+.++|.+||+.|.+.        ++|+|++|+.|  +.|++.++.|+.|+||+|
T Consensus        81 -~~-~~f~-------~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G--~~G~v~vi~P~~t~C~~C  149 (291)
T cd01488          81 -KD-EEFY-------RQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG--FKGHARVILPGITACIEC  149 (291)
T ss_pred             -hh-HHHh-------cCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcc--cEEEEEEEcCCCCCcccc
Confidence             22 2333       78999999999999999999998765        49999999875  899999999999999999


Q ss_pred             CCCCccC-----------------C-------------------Cc-chhhh--------hh--------------cCc-
Q psy2302         170 APPLIVA-----------------S-------------------SI-DEKTL--------KK--------------DGV-  189 (292)
Q Consensus       170 ~~~~~~~-----------------~-------------------~~-~~~~~--------~~--------------~~~-  189 (292)
                      .+...+.                 .                   +. ++...        .+              .|+ 
T Consensus       150 ~~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~  229 (291)
T cd01488         150 SLDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVV  229 (291)
T ss_pred             CCCCCCCCCCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhH
Confidence            8531100                 0                   00 01100        01              111 


Q ss_pred             --cCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCC-eeeeeccCCCCCCCcccc
Q psy2302         190 --CAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDF-FPKMKLKPNPSCDDSYCV  249 (292)
Q Consensus       190 --~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~-~~~~~l~~~p~C~~~~C~  249 (292)
                        .-|+++++++++|++++.|++|++++..+. .+++.|+...+- ..++++.|+|+|+  +|+
T Consensus       230 ~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~~~~~~~~~~~c~--~c~  291 (291)
T cd01488         230 KRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEHERKEDCP--VCS  291 (291)
T ss_pred             heeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEEEEEEEeeCCCCC--CCC
Confidence              137788999999999999999999986654 688899988765 4688999999999  896

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=3.9e-39  Score=278.73  Aligned_cols=184  Identities=23%  Similarity=0.415  Sum_probs=164.5

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN   81 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~   81 (292)
                      ++.||. +.|++|+++||+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||| |+.+|+|++|+++++++|++
T Consensus         8 i~l~G~-e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~   86 (197)
T cd01492           8 IRLWGL-EAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRA   86 (197)
T ss_pred             HHHhCH-HHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHH
Confidence            456999 9999999999999999999999999999999999999999999999999976 68999999999999999999


Q ss_pred             hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302          82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP  161 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p  161 (292)
                      +||+++++.+...+++  +..+++       .++|+||+|+|++.++.++|++|+++++||+.+++.+  +.|++.... 
T Consensus        87 lNp~v~i~~~~~~~~~--~~~~~~-------~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G--~~G~v~~d~-  154 (197)
T cd01492          87 LNPRVKVSVDTDDISE--KPEEFF-------SQFDVVVATELSRAELVKINELCRKLGVKFYATGVHG--LFGFVFADL-  154 (197)
T ss_pred             HCCCCEEEEEecCccc--cHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecC--CEEEEEEec-
Confidence            9999999999887763  333444       7899999999999999999999999999999998865  688765311 


Q ss_pred             CCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCC
Q psy2302         162 GESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDF  231 (292)
Q Consensus       162 ~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~  231 (292)
                                                      ++|+++++|+++|+|++|+|++.+++ ++++.||..+..
T Consensus       155 --------------------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~~~  193 (197)
T cd01492         155 --------------------------------LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETSE  193 (197)
T ss_pred             --------------------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCCCc
Confidence                                            56788999999999999999998877 678889988764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=1.4e-38  Score=275.46  Aligned_cols=183  Identities=18%  Similarity=0.313  Sum_probs=162.7

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCc--CCCCChHHHHHHHHH
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQP--DQCGLSKVEAARITL   79 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~--~diG~~Ka~a~~~~l   79 (292)
                      ++.||. +.|++|+++||+|+|+||+|++++++|+++||++|+|+|+|.|+++|++||+ |++  +|+|++|+++++++|
T Consensus         6 i~l~G~-~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L   84 (198)
T cd01485           6 IRLWGD-EAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFL   84 (198)
T ss_pred             eeccCH-HHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHH
Confidence            445999 9999999999999999999999999999999999999999999999999986 577  899999999999999


Q ss_pred             HhhCCCCeEEEEeccccc-hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302          80 QNINPDVTIEVHNFNITL-LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQL  158 (292)
Q Consensus        80 ~~~np~v~v~~~~~~i~~-~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~  158 (292)
                      +++||+++++.+...+++ .++..+++       .++|+||+|.|+..++.++|++|+++++|++.+++.+  +.|++.+
T Consensus        85 ~~lNp~v~i~~~~~~~~~~~~~~~~~~-------~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G--~~G~v~~  155 (198)
T cd01485          85 QELNPNVKLSIVEEDSLSNDSNIEEYL-------QKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYG--LIGYAFF  155 (198)
T ss_pred             HHHCCCCEEEEEecccccchhhHHHHH-------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeec--CEEEEEE
Confidence            999999999999877752 23444544       6899999999999999999999999999999998864  7887653


Q ss_pred             ecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCC
Q psy2302         159 IIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTD  230 (292)
Q Consensus       159 ~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~  230 (292)
                      ..                                   |+++++|+++|+|++|+|+|.+++ ++++.||.+.+
T Consensus       156 ~~-----------------------------------p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~~  193 (198)
T cd01485         156 DF-----------------------------------PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFES  193 (198)
T ss_pred             ch-----------------------------------hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECccc
Confidence            21                                   567899999999999999999877 78888998876

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=100.00  E-value=4.6e-38  Score=274.84  Aligned_cols=194  Identities=27%  Similarity=0.307  Sum_probs=161.9

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      ++++|. +.|++|++++|+|+|+||+|+.++++|+++||++|+|+|+|.|+.+||+||+|..+|+|++|+++++++|+++
T Consensus        15 ~~~~g~-~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l   93 (212)
T PRK08644         15 ASRHTP-KLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI   93 (212)
T ss_pred             HhhcCH-HHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH
Confidence            567999 9999999999999999999999999999999999999999999999999998778999999999999999999


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh-CCceeecCcccceeEEEEEeecC
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL-GQTWFESGVSENAVSGHIQLIIP  161 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~-~~p~i~~~~~~~~~~G~v~~~~p  161 (292)
                      ||+++++.++..+++ +++.+++       +++|+||+|+|++.+|..+++.|.++ ++|+|.++..+  ..|+...+.|
T Consensus        94 np~v~v~~~~~~i~~-~~~~~~~-------~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~--~~~~~~~~~~  163 (212)
T PRK08644         94 NPFVEIEAHNEKIDE-DNIEELF-------KDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMA--GYGDSNSIKT  163 (212)
T ss_pred             CCCCEEEEEeeecCH-HHHHHHH-------cCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhh--ccCCceEEEe
Confidence            999999999999886 6666665       78999999999999999999999999 99999874432  3455454555


Q ss_pred             CCCCccCCCC--CCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCC
Q psy2302         162 GESACFACAP--PLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGE  218 (292)
Q Consensus       162 ~~t~C~~C~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~  218 (292)
                      ..  |+.|.+  +...    . ..+...    +.++|+++++|+|+|+|++|+|+|.+.
T Consensus       164 ~~--~~~~~~~~~~~~----~-~~~~~~----gv~~~~~~~i~~~~a~ealk~l~~~~~  211 (212)
T PRK08644        164 RR--IGKNFYIVGDFV----T-EAKPGN----PLMAPRVNIAAAHQANLVLRLILGEEV  211 (212)
T ss_pred             cC--CCCCeeECCCCC----c-ccCCCC----CccchHHHHHHHHHHHHHHHHHhCCCC
Confidence            33  333332  2111    1 112222    448999999999999999999998653

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=100.00  E-value=7.2e-38  Score=305.07  Aligned_cols=238  Identities=19%  Similarity=0.268  Sum_probs=186.4

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCC---CChHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQC---GLSKVEAARI   77 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~di---G~~Ka~a~~~   77 (292)
                      +|+++|+    ++|+++||+|+|+||+||.+|++|+++|||+|+|||+|+|+.|||+||+ |+.+|+   |++||+++++
T Consensus       327 llP~l~~----ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~  402 (664)
T TIGR01381       327 LHPDLQL----ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQK  402 (664)
T ss_pred             cCChhhH----HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHH
Confidence            4566666    8999999999999999999999999999999999999999999999986 789999   9999999999


Q ss_pred             HHHhhCCCCeEEEEeccc-------cch---------hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302          78 TLQNINPDVTIEVHNFNI-------TLL---------RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT  141 (292)
Q Consensus        78 ~l~~~np~v~v~~~~~~i-------~~~---------~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p  141 (292)
                      +|+++||+++++.+..+|       ++.         +++.+++       .++|+|++|+||+++|+++|.+|.++++|
T Consensus       403 ~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li-------~~~DvV~d~tDn~esR~L~n~~c~~~~kp  475 (664)
T TIGR01381       403 ALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLI-------KDHDVVFLLLDSREARWLPTVLCSRHKKI  475 (664)
T ss_pred             HHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHH-------hhCCEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            999999999999998875       321         3455565       78999999999999999999999999999


Q ss_pred             eeecCcccceeEEEEEeec------------------CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHH
Q psy2302         142 WFESGVSENAVSGHIQLII------------------PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAG  203 (292)
Q Consensus       142 ~i~~~~~~~~~~G~v~~~~------------------p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivas  203 (292)
                      +|+++ .  ++.|++.+..                  +.+.+||.|...-.+......+++.+  .|+ .+.|..+++|+
T Consensus       476 lI~aA-l--Gfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDq--qCt-VtrPgv~~ias  549 (664)
T TIGR01381       476 AISAA-L--GFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQ--QCT-VTRPGTAMIAS  549 (664)
T ss_pred             EEEEE-e--ccceEEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccc--cce-EecchHHHHHH
Confidence            99985 3  4788776540                  12689999994333233333344333  243 47788999999


Q ss_pred             HHHHHHHHHHhCCCCC-----------------CeeEEEeCCCCCeeeeeccCCCCCCCccccchhh-hcccC
Q psy2302         204 FLVQNALKKLLKFGEV-----------------SWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQK-EFNAR  258 (292)
Q Consensus       204 l~a~e~lk~l~g~~~~-----------------~~~~~~d~~~~~~~~~~l~~~p~C~~~~C~~~~~-~~~~~  258 (292)
                      ++|.|+|+.|+..+..                 .+.++-.+.+.+.....-++.++|.  .|+.... +|...
T Consensus       550 ~~AvEll~~llqhp~~~~ap~~~~~~~~~lG~~Phqirg~l~~f~~~~~~~~~~~~C~--aCs~~v~~~y~~~  620 (664)
T TIGR01381       550 GLAVELLVSVLQHPLPSKTPASHDDNTTVLGALPHQIRGFLGRFQQILLSVKRFDQCV--ACSDAVAAEYQQR  620 (664)
T ss_pred             HHHHHHHHHHhcCCcccCCCCcCCCCCCccccCCceeeeehhhCeeeeecccCCCccc--CCCHHHHHHHHhc
Confidence            9999999999986421                 1333333333334455557899999  7998763 35443

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=100.00  E-value=3.3e-37  Score=282.20  Aligned_cols=144  Identities=33%  Similarity=0.578  Sum_probs=132.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ||+|+|+||+|++++++|+++|||+|+|+|+|.||.+||+||| |+++|+|++|+++++++|+++||+++++.+..++++
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            6999999999999999999999999999999999999999987 699999999999999999999999999999988875


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCccCCCC
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAP  171 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~C~~  171 (292)
                      ...-.+++       +++|+||+|.|+.++|.++|++|+++++|+|++++.|  +.|++.++.|+.++||+|..
T Consensus        81 ~~~~~~f~-------~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G--~~G~v~vi~p~~t~c~~c~~  145 (312)
T cd01489          81 PDFNVEFF-------KQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTG--FLGQVQVIKKGKTECYECQP  145 (312)
T ss_pred             ccchHHHH-------hcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCc--ceeEEEEEcCCCCCccCCCC
Confidence            22222443       7899999999999999999999999999999998874  89999999999999999984

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=100.00  E-value=6.9e-37  Score=270.36  Aligned_cols=144  Identities=27%  Similarity=0.493  Sum_probs=133.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ||+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||| |+++|+|++|+++++++++++||+++++.+..++++
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            6999999999999999999999999999999999999999987 689999999999999999999999999999998865


Q ss_pred             hhhHH-HHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCccCCCC
Q psy2302          98 LRKVG-ALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAP  171 (292)
Q Consensus        98 ~~~~~-~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~C~~  171 (292)
                      .+.+. ++       ++++|+||+|+||.++|.++|++|+++++|+|++|+.|  +.|++.++.|+.++||+|.+
T Consensus        81 ~~~~~~~f-------~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G--~~G~v~vi~p~~t~c~~C~~  146 (234)
T cd01484          81 EQDFNDTF-------FEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEG--FKGNAQVILPGMTECIECTL  146 (234)
T ss_pred             hhhchHHH-------HhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccC--CceEEEEEcCCCCCCcccCC
Confidence            33332 33       37899999999999999999999999999999999864  89999999999999999996

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK14852 hypothetical protein; Provisional

Probab=100.00  E-value=2e-36  Score=306.52  Aligned_cols=220  Identities=21%  Similarity=0.311  Sum_probs=186.8

Q ss_pred             ccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhh
Q psy2302           4 KRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus         4 ~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      ..||. +.|++|+++||+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|||||+ ++.+|||++|+++++++|+++
T Consensus       320 ~lig~-e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I  398 (989)
T PRK14852        320 GLVDY-AGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV  398 (989)
T ss_pred             hhcCH-HHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH
Confidence            45899 9999999999999999999999999999999999999999999999999987 699999999999999999999


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ||+++|+.++..++. +++++++       .++|+||||+|++  ..+..+++.|+++++|+|.+++.+  +.|++.++.
T Consensus       399 NP~v~I~~~~~~I~~-en~~~fl-------~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G--~~g~v~v~~  468 (989)
T PRK14852        399 NPFLDIRSFPEGVAA-ETIDAFL-------KDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG--YSCALLVFM  468 (989)
T ss_pred             CCCCeEEEEecCCCH-HHHHHHh-------hCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc--cCeeEEEEc
Confidence            999999999999986 7888876       7899999999985  467788889999999999998874  899999998


Q ss_pred             CCCCCccCCCCCCccCCC---------------------cchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC
Q psy2302         161 PGESACFACAPPLIVASS---------------------IDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV  219 (292)
Q Consensus       161 p~~t~C~~C~~~~~~~~~---------------------~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~  219 (292)
                      |+. +||+|+|+......                     .+....+-.+...||++..+.+.|++++.+++|+++|.+..
T Consensus       469 p~~-~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~  547 (989)
T PRK14852        469 PGG-MNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGI  547 (989)
T ss_pred             CCC-CCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCcc
Confidence            864 99999986421100                     00111111122357888899999999999999999999875


Q ss_pred             ---CeeEEEeCCCCCeeee
Q psy2302         220 ---SWYLGYSALTDFFPKM  235 (292)
Q Consensus       220 ---~~~~~~d~~~~~~~~~  235 (292)
                         .+.+.||...+.+.+-
T Consensus       548 ~~~p~~~qfd~~~~~~~~~  566 (989)
T PRK14852        548 RPVPYFRQFDPLTGRHVRG  566 (989)
T ss_pred             ccCcchhccchhhccccee
Confidence               5778888888766543

>PRK14851 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-36  Score=300.35  Aligned_cols=221  Identities=24%  Similarity=0.320  Sum_probs=186.8

Q ss_pred             cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhC
Q psy2302           5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus         5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      .||. +.|++|+++||+|+|+||+||+++++|+++|||+|+|+|+|.|+++|||||+ |+.+|+|++|+++++++|+++|
T Consensus        32 l~g~-e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in  110 (679)
T PRK14851         32 LFTP-GEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN  110 (679)
T ss_pred             hcCH-HHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC
Confidence            4788 9999999999999999999999999999999999999999999999999987 6899999999999999999999


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC--HHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN--FEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP  161 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~--~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p  161 (292)
                      |+++|+.++..++. +++.+++       .++|+||||+|+  ..+|.+|++.|.++++|+|.+++.+  +.|++.++.|
T Consensus       111 P~~~I~~~~~~i~~-~n~~~~l-------~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G--~~g~~~~~~p  180 (679)
T PRK14851        111 PFLEITPFPAGINA-DNMDAFL-------DGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG--YSSAMLVFTP  180 (679)
T ss_pred             CCCeEEEEecCCCh-HHHHHHH-------hCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc--ccceEEEEcC
Confidence            99999999999986 7887776       689999999997  4688999999999999999998874  8999999988


Q ss_pred             CCCCccCCCCCCccCCC---------------------cchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-
Q psy2302         162 GESACFACAPPLIVASS---------------------IDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-  219 (292)
Q Consensus       162 ~~t~C~~C~~~~~~~~~---------------------~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-  219 (292)
                      + +.||.|+|.......                     .+.....-.+...+|+...+..++++++.|++|+|++.+.. 
T Consensus       181 ~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (679)
T PRK14851        181 Q-GMGFDDYFNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGGLR  259 (679)
T ss_pred             C-CCCHhHhccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCeee
Confidence            7 799999975422100                     01111100111236677888899999999999999998875 


Q ss_pred             --CeeEEEeCCCCCeeeeec
Q psy2302         220 --SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       220 --~~~~~~d~~~~~~~~~~l  237 (292)
                        .++..||...+.+....+
T Consensus       260 ~~p~~~~~d~~~~~~~~~~~  279 (679)
T PRK14851        260 PVPCYLQFDPFLQKLRKGRL  279 (679)
T ss_pred             ccchhhhcchhhcceeEEEe
Confidence              477888888777765555

>KOG2015|consensus

Probab=100.00  E-value=1.8e-35  Score=263.50  Aligned_cols=230  Identities=27%  Similarity=0.441  Sum_probs=189.7

Q ss_pred             HHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          10 ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      |..+-|.+.||+|+|+||+||+++++|+.+|++.+.+||.|+++.+|||||| |++.|+|++|+++|++.+.+..|.+.|
T Consensus        33 e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v  112 (422)
T KOG2015|consen   33 ENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVV  112 (422)
T ss_pred             HHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEE
Confidence            6678889999999999999999999999999999999999999999999988 899999999999999999999999999


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh---C-------CceeecCcccceeEEEEEe
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL---G-------QTWFESGVSENAVSGHIQL  158 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~---~-------~p~i~~~~~~~~~~G~v~~  158 (292)
                      ..|..+|.+ . -.++       +++||+||...|+.++|+|||....+.   |       +|+|++|..|  +.|++.+
T Consensus       113 ~~h~~kIqd-~-~~~F-------Yk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG--~KG~arv  181 (422)
T KOG2015|consen  113 VPHRQKIQD-K-PISF-------YKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEG--FKGHARV  181 (422)
T ss_pred             eeeecchhc-C-CHHH-------HhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCccc--ccceeEE
Confidence            999998875 1 1222       378999999999999999999976653   3       5999999975  8999999


Q ss_pred             ecCCCCCccCCCC---CCcc--------------C----------------C----Ccc-h--------hhhhhc-----
Q psy2302         159 IIPGESACFACAP---PLIV--------------A----------------S----SID-E--------KTLKKD-----  187 (292)
Q Consensus       159 ~~p~~t~C~~C~~---~~~~--------------~----------------~----~~~-~--------~~~~~~-----  187 (292)
                      +.|+.|+|+.|..   |...              +                .    +.+ +        +.+.++     
T Consensus       182 I~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I  261 (422)
T KOG2015|consen  182 IYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANEFNI  261 (422)
T ss_pred             EecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence            9999999999972   1110              0                0    000 0        111111     


Q ss_pred             ---------Ccc---CCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCC-eeeeeccCCCCCCCccccchh
Q psy2302         188 ---------GVC---AASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDF-FPKMKLKPNPSCDDSYCVQRQ  252 (292)
Q Consensus       188 ---------~~~---~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~-~~~~~l~~~p~C~~~~C~~~~  252 (292)
                               |+.   .|++..+++++|+..|.||+|+++....+ .+++.|+...+- ..++.+.|.++|+  +|+...
T Consensus       262 ~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~~er~~nC~--vCS~~~  338 (422)
T KOG2015|consen  262 TGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFLLERDKNCP--VCSNLV  338 (422)
T ss_pred             ccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeEEEeeeccCCCCc--cccCCC
Confidence                     111   25566778999999999999999998777 788899888775 4688999999999  899754

>PRK07877 hypothetical protein; Provisional

Probab=100.00  E-value=4.1e-35  Score=293.35  Aligned_cols=208  Identities=21%  Similarity=0.236  Sum_probs=172.9

Q ss_pred             cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302           5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus         5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      .||. +.|++|++++|+|+|+| +||.+|.+|+++|| |+|+|+|+|.||+||||||+|+..|+|++|+++++++|+++|
T Consensus        96 ~ig~-~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in  173 (722)
T PRK07877         96 KITA-EEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD  173 (722)
T ss_pred             hCCH-HHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC
Confidence            4788 99999999999999997 99999999999996 999999999999999999989999999999999999999999


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEE----Eee
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHI----QLI  159 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v----~~~  159 (292)
                      |+++|+++..+++. +++++++       .++|+||||+||+++|.+||++|.++++|||.++..+    |++    .-+
T Consensus       174 p~i~v~~~~~~i~~-~n~~~~l-------~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~----g~~~~e~~~~  241 (722)
T PRK07877        174 PYLPVEVFTDGLTE-DNVDAFL-------DGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR----GLLDVERFDL  241 (722)
T ss_pred             CCCEEEEEeccCCH-HHHHHHh-------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC----CCcCcceeee
Confidence            99999999999996 8888887       6899999999999999999999999999999987543    444    234


Q ss_pred             cCCCCCccCCCCCCccCCCcc----------------hhh--------hhhcCc---cCCCCchHHHHHHHHHHHHHHHH
Q psy2302         160 IPGESACFACAPPLIVASSID----------------EKT--------LKKDGV---CAASLPTTMGIVAGFLVQNALKK  212 (292)
Q Consensus       160 ~p~~t~C~~C~~~~~~~~~~~----------------~~~--------~~~~~~---~~~s~~~~~~ivasl~a~e~lk~  212 (292)
                      .| .++||.|+++........                .+.        +-+.+.   ..|+++..+.+.|++++..+.|+
T Consensus       242 ~p-~~pc~~cl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~s~~~~~~~~~~~pql~~~~~~~~~~~~~~~~~i  320 (722)
T PRK07877        242 EP-DRPILHGLLGDIDAAKLAGLSTKDKVPHVLRILDAEALSARMAASLVEVDQTLSTWPQLASDVVLGAAAVAEAVRRI  320 (722)
T ss_pred             CC-CCceeeccCCCCChhhhccCChhccCcceeeeccccccCHHHHHHHHhccCccccCCchHHHHHhhHHHHHHHHHHH
Confidence            56 789999999865322110                000        001111   13567788889999999999999


Q ss_pred             HhCCCCCCeeEEEeC
Q psy2302         213 LLKFGEVSWYLGYSA  227 (292)
Q Consensus       213 l~g~~~~~~~~~~d~  227 (292)
                      ++|..-++..+..|.
T Consensus       321 ~l~~~~~sgr~~~~~  335 (722)
T PRK07877        321 GLGEPLESGRVRVDL  335 (722)
T ss_pred             HcCCcCCCCCEEecH
Confidence            999776654445554

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=2.6e-34  Score=260.24  Aligned_cols=151  Identities=21%  Similarity=0.340  Sum_probs=136.2

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN   81 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~   81 (292)
                      |+.||. ++|++|++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+.+||+||| ++++|+|++|+++++++|++
T Consensus         6 l~~~G~-eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~e   84 (286)
T cd01491           6 LYVLGH-EAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAE   84 (286)
T ss_pred             eeccCH-HHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHH
Confidence            566999 9999999999999999999999999999999999999999999999999987 58999999999999999999


Q ss_pred             hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302          82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP  161 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p  161 (292)
                      +||+++++.+...++. +    .+       .++|+||+|.|+...+.+||++|+++++|||.+++.+  +.|++.. .+
T Consensus        85 LNp~V~V~~~~~~~~~-~----~l-------~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G--~~G~vf~-df  149 (286)
T cd01491          85 LNPYVPVTVSTGPLTT-D----EL-------LKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRG--LFGSIFC-DF  149 (286)
T ss_pred             HCCCCEEEEEeccCCH-H----HH-------hcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccc--cEEEEEe-cC
Confidence            9999999999876543 2    22       6899999999999999999999999999999998864  8998765 23


Q ss_pred             CCCCccCCCC
Q psy2302         162 GESACFACAP  171 (292)
Q Consensus       162 ~~t~C~~C~~  171 (292)
                        ++||.|..
T Consensus       150 --g~~f~~~d  157 (286)
T cd01491         150 --GDEFTVYD  157 (286)
T ss_pred             --CCeEEEeC
Confidence              47777764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=100.00  E-value=1.9e-34  Score=244.85  Aligned_cols=171  Identities=29%  Similarity=0.368  Sum_probs=146.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL   98 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~   98 (292)
                      ||+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||+|..+|+|++|+++++++|+++||+++++.++.+++. 
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~-   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE-   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh-
Confidence            6999999999999999999999999999999999999999999888999999999999999999999999999999876 


Q ss_pred             hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh-CCceeecCcccceeEEEEEeecCCC--CCccCCCCCCcc
Q psy2302          99 RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL-GQTWFESGVSENAVSGHIQLIIPGE--SACFACAPPLIV  175 (292)
Q Consensus        99 ~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~-~~p~i~~~~~~~~~~G~v~~~~p~~--t~C~~C~~~~~~  175 (292)
                      +++.+++       .++|+||+|+|++.+|..+++.|.++ ++|||.++..  ++.|++.++.|+.  .+||+|..... 
T Consensus        80 ~~~~~~l-------~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (174)
T cd01487          80 NNLEGLF-------GDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGM--AGFGDSNNIKTKKISDNFYICGDLVN-  149 (174)
T ss_pred             hhHHHHh-------cCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehh--hccCCeEEEEecCCCCCeEEeecCCC-
Confidence            6666665       78999999999999999888888877 9999998655  3577777776655  57999982110 


Q ss_pred             CCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHH
Q psy2302         176 ASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNAL  210 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~l  210 (292)
                            ..+...    +.++|+++++|+++|+|+|
T Consensus       150 ------~~~~~~----g~~~~~~~~~~~~~~~e~~  174 (174)
T cd01487         150 ------EAKEGL----GLMAPRVNICAAHQANLVL  174 (174)
T ss_pred             ------CCCCCc----CccccHHHHHHHHHHHhhC
Confidence                  112233    3488999999999999985

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=100.00  E-value=2.4e-34  Score=249.25  Aligned_cols=188  Identities=28%  Similarity=0.399  Sum_probs=151.6

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      .++.|. +.|++|+++||+|+|+||+|+.+|++|+++||++++|+|+|.|+++||+||+|..+|+|++|+++++++|+++
T Consensus         8 ~~~~~~-~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~i   86 (200)
T TIGR02354         8 VARHTP-KIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEI   86 (200)
T ss_pred             HHhcCH-HHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHH
Confidence            456788 9999999999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH-HHhCCceeecCcccceeEEEE--Eee
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC-NQLGQTWFESGVSENAVSGHI--QLI  159 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~-~~~~~p~i~~~~~~~~~~G~v--~~~  159 (292)
                      ||+++++.+..+++. +++.+++       .++|+||+|+|++++|..+++.| ..++.+++.++ +  ++.|+.  ..+
T Consensus        87 np~~~i~~~~~~i~~-~~~~~~~-------~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~-~--g~~g~~~~~~~  155 (200)
T TIGR02354        87 NPYTEIEAYDEKITE-ENIDKFF-------KDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA-S--GLAGYDDANSI  155 (200)
T ss_pred             CCCCEEEEeeeeCCH-hHHHHHh-------cCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE-e--ccccCCCCceE
Confidence            999999999999986 7777665       78999999999999998765554 45444443332 2  244443  333


Q ss_pred             cCC--CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHH
Q psy2302         160 IPG--ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKL  213 (292)
Q Consensus       160 ~p~--~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l  213 (292)
                      .+.  ...||.|-...      . ..+...|+    ++|.++++|+++|.+++|++
T Consensus       156 ~~~~~~~~~~~~~~~~------~-~~~~~~g~----~~p~v~~~a~~qa~~~l~~~  200 (200)
T TIGR02354       156 KTRKISKHFYLCGDGK------S-DAKQGLGL----MAPRVQICAAHQANLVLELI  200 (200)
T ss_pred             EecccCCCEEEcCCCC------C-cccCCCCC----chhHHHHHHHHHHHHHHHhC
Confidence            332  35688883321      1 12233344    89999999999999999984

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=100.00  E-value=1.6e-33  Score=254.16  Aligned_cols=226  Identities=18%  Similarity=0.272  Sum_probs=166.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCC--CCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQ--CGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~d--iG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+||+||+ |+.+|  +|++|+++++++|+++||+++++.+...|
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            6999999999999999999999999999999999999999986 68888  99999999999999999999999998665


Q ss_pred             ----------------cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEee
Q psy2302          96 ----------------TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLI  159 (292)
Q Consensus        96 ----------------~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~  159 (292)
                                      .+.+++.+++       +++|+|++|+|++++|++++.+|.++++|+|+++.   ++.|++...
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li-------~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aal---Gfdg~lvmr  150 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELI-------KDHDVIFLLTDSRESRWLPTLLSAAKNKLVINAAL---GFDSYLVMR  150 (307)
T ss_pred             cccccccccccccccccCHHHHHHHH-------hhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEEe---ccceEEEEE
Confidence                            1234566666       78999999999999999999999999999998644   356665433


Q ss_pred             c---C----------------CCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCC--
Q psy2302         160 I---P----------------GESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGE--  218 (292)
Q Consensus       160 ~---p----------------~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~--  218 (292)
                      .   +                .+.+||.|..--.+......+++.+.  |+-. .|..+.+||-+|.|.+--|+..+.  
T Consensus       151 hg~~~~~~~~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqq--ctvt-rpG~a~ias~~avEl~~s~lqhp~~~  227 (307)
T cd01486         151 HGAGPQSQSGSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQ--CTVT-RPGLSMIASSIAVELLVSLLQHPLGG  227 (307)
T ss_pred             eCCCcccccccccccccccCCCCcceeeeCCEecCCCCCCCcccCcc--ccee-cCchHHHHHHHHHHHHHHHHcCCCcc
Confidence            2   1                15789999864433344444554443  3332 333445556566666666666431  


Q ss_pred             --C------------------CeeEEEeCCCCCeeeeeccCCCCCCCccccchhh-hcccCc
Q psy2302         219 --V------------------SWYLGYSALTDFFPKMKLKPNPSCDDSYCVQRQK-EFNARP  259 (292)
Q Consensus       219 --~------------------~~~~~~d~~~~~~~~~~l~~~p~C~~~~C~~~~~-~~~~~~  259 (292)
                        +                  .+.++-.+.+.+.....-++.+.|.  .|+.... +|.+.+
T Consensus       228 ~a~~~~~~~~~~~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~--aCs~~v~~~y~~~g  287 (307)
T cd01486         228 HAPAESSSNEGDEPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCT--ACSDAVIDEYHREG  287 (307)
T ss_pred             CCCCccccccCCCCCCcCccCCeeeeeehhhCeeeeecccCCCccc--cCCHHHHHHHHhcc
Confidence              1                  1233333333333444457899999  7998763 354444

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.98  E-value=1.4e-31  Score=218.05  Aligned_cols=133  Identities=38%  Similarity=0.678  Sum_probs=119.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      |++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||+ ++.+|+|++|+++++++|+++||+++++.++.+
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            5789999999999999999999999999999999999999999986 578899999999999999999999999999999


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEe
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQL  158 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~  158 (292)
                      ++. +++.+++       +++|+||+|+|+.+++.+++++|+++++|||.+++.+  +.|++..
T Consensus        81 ~~~-~~~~~~~-------~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g--~~G~~~~  134 (135)
T PF00899_consen   81 IDE-ENIEELL-------KDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNG--FYGQVVM  134 (135)
T ss_dssp             CSH-HHHHHHH-------HTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEET--TEEEEEE
T ss_pred             ccc-ccccccc-------cCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeec--CEEEEEE
Confidence            965 6777776       5899999999999999999999999999999998874  6887643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.98  E-value=3.5e-31  Score=234.60  Aligned_cols=210  Identities=23%  Similarity=0.255  Sum_probs=165.3

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCC-----C-----eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGI-----G-----KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP   84 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gv-----g-----~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np   84 (292)
                      -+..||+|||+||+||+++++|+++|+     |     +|+|+|+|+|+++||+||+|.+.|+|++|++++++++.+++ 
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~-   87 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAM-   87 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhcc-
Confidence            478899999999999999999999973     4     99999999999999999999999999999999999999988 


Q ss_pred             CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHH---hCCceeecCcccc------ee---
Q psy2302          85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ---LGQTWFESGVSEN------AV---  152 (292)
Q Consensus        85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~---~~~p~i~~~~~~~------~~---  152 (292)
                      +++++++..+++. +.+   +       .++|+||+|+||.++|..|++.|.+   ..+||+++|....      +.   
T Consensus        88 ~~~i~a~~~~~~~-~~~---~-------~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~  156 (244)
T TIGR03736        88 GTDWTAHPERVER-SST---L-------HRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPS  156 (244)
T ss_pred             CceEEEEEeeeCc-hhh---h-------cCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEeccc
Confidence            8999999988875 221   2       5799999999999999999999988   2489999988432      11   


Q ss_pred             --EEEEEeecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCC
Q psy2302         153 --SGHIQLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALT  229 (292)
Q Consensus       153 --~G~v~~~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~  229 (292)
                        .|+..++.|..|.||.|......++..+.+.|..+....+ .......+++.+|...|.-|+..+.. .+...+|+.+
T Consensus       157 ~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~-Q~l~iN~~~a~~~~~~L~~lf~~g~~~~~g~~~nl~~  235 (244)
T TIGR03736       157 RAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAK-QSLFINQAIAVFAMNLLWKLFRKGRLEFHGVFVNLAT  235 (244)
T ss_pred             ccccCCceecCCchhhCcccccCccCCCCCCCCchHHHHhcC-chhHHHHHHHHHHHHHHHHHHhcCceeeeEEEEECCC
Confidence              3555777898999999886432222234556654443322 23344556667777888888888877 5778889988


Q ss_pred             CCeeeeec
Q psy2302         230 DFFPKMKL  237 (292)
Q Consensus       230 ~~~~~~~l  237 (292)
                      +..+.+++
T Consensus       236 ~~~~p~~v  243 (244)
T TIGR03736       236 GRTNPLPV  243 (244)
T ss_pred             CccccccC
Confidence            87776554

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.97  E-value=1.3e-31  Score=236.41  Aligned_cols=136  Identities=32%  Similarity=0.485  Sum_probs=125.8

Q ss_pred             CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHhhCC
Q psy2302           6 MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQNINP   84 (292)
Q Consensus         6 ~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~~np   84 (292)
                      +|. ++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||++ ..+|+|++|+++++++|+++||
T Consensus         1 ~G~-e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP   79 (231)
T cd00755           1 YGE-EGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP   79 (231)
T ss_pred             CCH-HHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence            477 99999999999999999999999999999999999999999999999999985 6899999999999999999999


Q ss_pred             CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      +++++.+..+++. +++.+++.      .++|+||+|.|+...+..++++|+++++|+|.++..+
T Consensus        80 ~~~V~~~~~~i~~-~~~~~l~~------~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g  137 (231)
T cd00755          80 ECEVDAVEEFLTP-DNSEDLLG------GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG  137 (231)
T ss_pred             CcEEEEeeeecCH-hHHHHHhc------CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            9999999999886 67766652      4699999999999999999999999999999875544

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG2013|consensus

Probab=99.97  E-value=2.4e-32  Score=254.18  Aligned_cols=155  Identities=30%  Similarity=0.534  Sum_probs=142.7

Q ss_pred             hHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCC
Q psy2302           8 IVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDV   86 (292)
Q Consensus         8 ~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v   86 (292)
                      ..+-++.++++||+||||||+||+++++|++.|+++|+|||-|+|+.||||||| |+.++||++||.+|++..+++||.+
T Consensus         3 ~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~   82 (603)
T KOG2013|consen    3 PREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNI   82 (603)
T ss_pred             hHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCC
Confidence            345678899999999999999999999999999999999999999999999987 7999999999999999999999999


Q ss_pred             eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCc
Q psy2302          87 TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESAC  166 (292)
Q Consensus        87 ~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C  166 (292)
                      ++..+...|.+.+.-.++       |+.||+|++|.||.++|..+|+.|....+|+|.+|..|  +.||+.++.+|.|.|
T Consensus        83 ~l~~yhanI~e~~fnv~f-------f~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~G--f~GQv~~ii~GkTEC  153 (603)
T KOG2013|consen   83 KLVPYHANIKEPKFNVEF-------FRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGG--FLGQVQVIIKGKTEC  153 (603)
T ss_pred             ceEeccccccCcchHHHH-------HHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCccc--ccceEEEEecCCcce
Confidence            999999999874222233       37899999999999999999999999999999999874  899999999999999


Q ss_pred             cCCCC
Q psy2302         167 FACAP  171 (292)
Q Consensus       167 ~~C~~  171 (292)
                      |.|..
T Consensus       154 yeC~p  158 (603)
T KOG2013|consen  154 YECIP  158 (603)
T ss_pred             ecccC
Confidence            99984

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=99.97  E-value=1.7e-31  Score=253.37  Aligned_cols=147  Identities=27%  Similarity=0.465  Sum_probs=132.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ||+|||+||+||+++++|+++||     |+|+|+|+|+||.+||+||| |+++|||++|+++++++++++||+++++.+.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            69999999999999999999999     99999999999999999987 7899999999999999999999999999999


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCccCCCC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAP  171 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~C~~  171 (292)
                      .++.. ++.. ++  ...++.++|+||+|.||.++|.++|+.|+.+++|++++|+.|  +.|+++++.|+.|.||+|..
T Consensus        81 ~~v~~-~~~~-~~--~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G--~~G~v~v~iP~~te~y~~~~  153 (435)
T cd01490          81 NRVGP-ETEH-IF--NDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLG--TKGNTQVVIPHLTESYSSSR  153 (435)
T ss_pred             cccCh-hhhh-hh--hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEeccc--ceeEEEEEeCCCCCCccCCC
Confidence            88864 2211 11  011247899999999999999999999999999999999875  79999999999999999984

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.97  E-value=5.2e-31  Score=272.29  Aligned_cols=158  Identities=25%  Similarity=0.453  Sum_probs=145.1

Q ss_pred             ccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHH
Q psy2302           4 KRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARI   77 (292)
Q Consensus         4 ~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~   77 (292)
                      +.||. +.|++|+++||+|||+||+||+++++|+++||     |+|+|+|+|.|+.|||+||| |+.+|||++|++++++
T Consensus       407 ~l~G~-~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~  485 (1008)
T TIGR01408       407 AVFGD-TFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAAD  485 (1008)
T ss_pred             HHcCH-HHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHH
Confidence            45998 99999999999999999999999999999999     89999999999999999987 6899999999999999


Q ss_pred             HHHhhCCCCeEEEEeccccch-hhH--HHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEE
Q psy2302          78 TLQNINPDVTIEVHNFNITLL-RKV--GALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSG  154 (292)
Q Consensus        78 ~l~~~np~v~v~~~~~~i~~~-~~~--~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G  154 (292)
                      +++++||+++++++..+++.. +++  .++       +.++|+||+|.||..+|.++|+.|+++++|+|.+|+.|  +.|
T Consensus       486 ~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f-------~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G--~~G  556 (1008)
T TIGR01408       486 ATLKINPQIKIDAHQNRVGPETETIFNDEF-------YEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLG--TKG  556 (1008)
T ss_pred             HHHHHCCCCEEEEEEeecChhhhhhhhHHH-------hhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccC--cee
Confidence            999999999999999988641 122  122       37899999999999999999999999999999999874  899


Q ss_pred             EEEeecCCCCCccCCCC
Q psy2302         155 HIQLIIPGESACFACAP  171 (292)
Q Consensus       155 ~v~~~~p~~t~C~~C~~  171 (292)
                      +++++.|+.|.||.|..
T Consensus       557 ~v~v~ip~~te~y~~~~  573 (1008)
T TIGR01408       557 NTQVVVPHLTESYGSSR  573 (1008)
T ss_pred             eEEEEeCCCcCCCCCCC
Confidence            99999999999999984

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.97  E-value=1e-30  Score=226.33  Aligned_cols=137  Identities=30%  Similarity=0.440  Sum_probs=128.4

Q ss_pred             cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHhhC
Q psy2302           5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus         5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      .+|. ++.++|++++|+|+|+||+||+++..|+|+|+|+|+|||.|.|+.+|+|||.. ...++|++|++++++|++++|
T Consensus        19 l~G~-~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~In   97 (263)
T COG1179          19 LYGE-DGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQIN   97 (263)
T ss_pred             HcCh-hHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhC
Confidence            3677 88999999999999999999999999999999999999999999999999986 578999999999999999999


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      |+++|+.++..++. +++++++.      .++|+||||.|+..++..+-.+|+++++|+|.++..+
T Consensus        98 P~c~V~~~~~f~t~-en~~~~~~------~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag  156 (263)
T COG1179          98 PECEVTAINDFITE-ENLEDLLS------KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG  156 (263)
T ss_pred             CCceEeehHhhhCH-hHHHHHhc------CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence            99999999999997 89988873      6899999999999999999999999999999876544

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=99.97  E-value=2.7e-30  Score=232.02  Aligned_cols=138  Identities=28%  Similarity=0.433  Sum_probs=126.5

Q ss_pred             ccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhh
Q psy2302           4 KRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus         4 ~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      +.||. ++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+++|+|||+ +..+++|++|+++++++++++
T Consensus        18 ~L~G~-e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I   96 (268)
T PRK15116         18 RLYGE-KALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI   96 (268)
T ss_pred             HHhCH-HHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH
Confidence            45999 9999999999999999999999999999999999999999999999999998 568899999999999999999


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      ||+++++.+...++. ++..+++.      .++|+||+|.|++.++..++++|+++++|+|.++..+
T Consensus        97 NP~~~V~~i~~~i~~-e~~~~ll~------~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag  156 (268)
T PRK15116         97 NPECRVTVVDDFITP-DNVAEYMS------AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG  156 (268)
T ss_pred             CCCcEEEEEecccCh-hhHHHHhc------CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            999999999888774 67766652      4799999999999999999999999999999875543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.97  E-value=1.7e-29  Score=207.65  Aligned_cols=132  Identities=37%  Similarity=0.622  Sum_probs=120.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ||+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++||+| +++|+|++|+++++++++++||+++++.++..++.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            69999999999999999999999999999999999999999886 59999999999999999999999999999988875


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                       .+..+++       .++|+||+|+|+.+.|..++++|+++++||+.+++.+  +.|++..+.
T Consensus        81 -~~~~~~~-------~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g--~~g~~~~~~  133 (143)
T cd01483          81 -DNLDDFL-------DGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLG--LGGDIQVID  133 (143)
T ss_pred             -hhHHHHh-------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--cEEEEEEEE
Confidence             3334444       7899999999999999999999999999999999875  788877665

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06153 hypothetical protein; Provisional

Probab=99.96  E-value=6.2e-29  Score=230.91  Aligned_cols=135  Identities=22%  Similarity=0.291  Sum_probs=121.8

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc--cCcCCCCC--hHHHHHHHH
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF--FQPDQCGL--SKVEAARIT   78 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~--~~~~diG~--~Ka~a~~~~   78 (292)
                      ..+-|+.+.|++|++++|+||||||+||.++..|+|+||++|+|+|+|.|+++||+||+  |..+|+|+  +|+++++++
T Consensus       162 s~R~~i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~r  241 (393)
T PRK06153        162 SSRAGIGALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSR  241 (393)
T ss_pred             ccccChHHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHH
Confidence            34567777899999999999999999999999999999999999999999999999986  68899999  999999999


Q ss_pred             HHhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcc
Q psy2302          79 LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVS  148 (292)
Q Consensus        79 l~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~  148 (292)
                      +.++++.  +..+...++. +++.. +       .++|+||+|+|+.++|.+|+++|.++++|||++|+.
T Consensus       242 l~~in~~--I~~~~~~I~~-~n~~~-L-------~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~  300 (393)
T PRK06153        242 YSNMRRG--IVPHPEYIDE-DNVDE-L-------DGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG  300 (393)
T ss_pred             HHHhCCe--EEEEeecCCH-HHHHH-h-------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence            9999984  5677778864 66543 2       689999999999999999999999999999998764

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=99.95  E-value=4.1e-28  Score=231.00  Aligned_cols=150  Identities=17%  Similarity=0.183  Sum_probs=133.9

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN   81 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~   81 (292)
                      |+.||. ++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|+| ++.+|+|++|+++++++|++
T Consensus         7 lrLwG~-~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~e   85 (425)
T cd01493           7 LRLWGE-HGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQE   85 (425)
T ss_pred             HHHhHH-HHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHH
Confidence            567999 9999999999999999999999999999999999999999999999999987 58899999999999999999


Q ss_pred             hCCCCeEEEEeccccch-hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          82 INPDVTIEVHNFNITLL-RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~-~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      +||+|+++.+...++.. ++-.++       +.++|+||++.++...+..++++|+++++|+|.++..|  +.|++.+..
T Consensus        86 LNp~V~i~~~~e~~~~ll~~~~~f-------~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G--~~G~v~v~~  156 (425)
T cd01493          86 LNPDVNGSAVEESPEALLDNDPSF-------FSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYG--LYGYIRIQL  156 (425)
T ss_pred             HCCCCEEEEEecccchhhhhHHHH-------hcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccc--CEEEEEEEE
Confidence            99999999988665421 111233       37899999999999999999999999999999998874  899998888


Q ss_pred             CC
Q psy2302         161 PG  162 (292)
Q Consensus       161 p~  162 (292)
                      |.
T Consensus       157 ~~  158 (425)
T cd01493         157 KE  158 (425)
T ss_pred             CC
Confidence            73

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.95  E-value=4.7e-27  Score=243.01  Aligned_cols=151  Identities=20%  Similarity=0.292  Sum_probs=134.1

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN   81 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~   81 (292)
                      ++.||. ++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||| ++++|||++|+++++++|++
T Consensus        11 i~l~G~-eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~e   89 (1008)
T TIGR01408        11 LYVLGD-EAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAE   89 (1008)
T ss_pred             HHhcCH-HHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHH
Confidence            345999 9999999999999999999999999999999999999999999999999987 58999999999999999999


Q ss_pred             hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC--CceeecCcccceeEEEEEee
Q psy2302          82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG--QTWFESGVSENAVSGHIQLI  159 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~--~p~i~~~~~~~~~~G~v~~~  159 (292)
                      +||.|+|+.+...++. +    ++       .++|+||+|.++...+..||++|++++  +|+|.+++.|  +.|++..-
T Consensus        90 LNp~V~V~~~~~~l~~-e----~l-------~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G--~~G~vf~D  155 (1008)
T TIGR01408        90 LNPYVHVSSSSVPFNE-E----FL-------DKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRG--LFGSLFCD  155 (1008)
T ss_pred             HCCCceEEEecccCCH-H----HH-------cCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecc--eEEEEEec
Confidence            9999999999877753 2    33       789999999999999999999999999  8999998874  78876542


Q ss_pred             cCCCCCccCCCC
Q psy2302         160 IPGESACFACAP  171 (292)
Q Consensus       160 ~p~~t~C~~C~~  171 (292)
                         -+.|+.|..
T Consensus       156 ---~g~~f~~~d  164 (1008)
T TIGR01408       156 ---FGDEFEVLD  164 (1008)
T ss_pred             ---CCCceEEEe
Confidence               234555553

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>KOG2014|consensus

Probab=99.93  E-value=4.1e-25  Score=196.05  Aligned_cols=218  Identities=20%  Similarity=0.289  Sum_probs=169.2

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQN   81 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~   81 (292)
                      +|.||+ ++|++|+++||+|+|.+|+|++++++|..+|||+++++|+..|.+.+++-||| ..+++|+.|+++..+++++
T Consensus        18 IRLWG~-~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~   96 (331)
T KOG2014|consen   18 IRLWGL-EAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLERLQD   96 (331)
T ss_pred             HHHccH-HHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHHHHh
Confidence            477999 99999999999999999999999999999999999999999999999999885 7899999999999999999


Q ss_pred             hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302          82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP  161 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p  161 (292)
                      +||.|++......+..         ....++.+||+||..-.+.+.+..+|..|++++++++.+.+.+  +.|....-.-
T Consensus        97 LNPmV~v~~d~edl~e---------k~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g--~~Gy~F~dL~  165 (331)
T KOG2014|consen   97 LNPMVDVSVDKEDLSE---------KDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFG--LCGYAFADLQ  165 (331)
T ss_pred             cCCceEEEechhhhhh---------cchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccc--eeeeeeeehh
Confidence            9999999987766543         1122458999999999999999999999999999999887764  5554432110


Q ss_pred             C---------------------------CCCccCCCCC--------Cc-----------------------------cCC
Q psy2302         162 G---------------------------ESACFACAPP--------LI-----------------------------VAS  177 (292)
Q Consensus       162 ~---------------------------~t~C~~C~~~--------~~-----------------------------~~~  177 (292)
                      +                           ..-|..|..|        ..                             .+.
T Consensus       166 ~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg  245 (331)
T KOG2014|consen  166 EHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPG  245 (331)
T ss_pred             hhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHHHHHhcCCCCc
Confidence            0                           0123333321        00                             000


Q ss_pred             Ccchhh-----------hh-----------hcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCCe
Q psy2302         178 SIDEKT-----------LK-----------KDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDFF  232 (292)
Q Consensus       178 ~~~~~~-----------~~-----------~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~~  232 (292)
                      ......           +.           ......+-++|+++++|+..|+|+||.+++.++| ++++.||+.++.-
T Consensus       246 ~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~g  323 (331)
T KOG2014|consen  246 ETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGKG  323 (331)
T ss_pred             cccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCce
Confidence            000000           00           0111234578999999999999999999999888 7899999998753

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.93  E-value=2.3e-25  Score=215.77  Aligned_cols=210  Identities=16%  Similarity=0.181  Sum_probs=165.0

Q ss_pred             HHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          10 ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ..+++.+++||+|+|.|++|+.++..|+++|+++|..+|+|.+ .+|++|       ||+. ++.+++    .||.+.++
T Consensus       122 ~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR-------IgEl-~e~A~~----~n~~v~v~  188 (637)
T TIGR03693       122 LKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR-------IHEL-AEIAEE----TDDALLVQ  188 (637)
T ss_pred             hhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH-------HHHH-HHHHHH----hCCCCceE
Confidence            5667779999999999999999999999999999999999999 999999       6776 655555    89999999


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhCCceeecCcccc-eeEEEEEeecCCCCCc
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLGQTWFESGVSEN-AVSGHIQLIIPGESAC  166 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~~p~i~~~~~~~-~~~G~v~~~~p~~t~C  166 (292)
                      .++.  +..+++.+.+       +++|+||..+|++  ....++|+.|++.|+|||.+...+. ++.|  +++.|++++|
T Consensus       189 ~i~~--~~~~dl~ev~-------~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liG--PlftPgkTGC  257 (637)
T TIGR03693       189 EIDF--AEDQHLHEAF-------EPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAG--PVFQQHGDEC  257 (637)
T ss_pred             eccC--CcchhHHHhh-------cCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeec--ceECCCCCcH
Confidence            9876  3336666665       7999999999965  4568899999999987776655441 3445  6777999999


Q ss_pred             cCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC---CeeEEEeCCCCCeeeeeccCCCCC
Q psy2302         167 FACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV---SWYLGYSALTDFFPKMKLKPNPSC  243 (292)
Q Consensus       167 ~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~---~~~~~~d~~~~~~~~~~l~~~p~C  243 (292)
                      |.|++.......     +.+.....++.|++.++++++++.|++|++++....   ++++.+|..++....+.+.|+|+|
T Consensus       258 WeCa~~RL~e~~-----L~~~~~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~~WH~vvkrPqC  332 (637)
T TIGR03693       258 FEAAWHRLHESA-----LHEENSLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEGGWHAFIKHPDA  332 (637)
T ss_pred             HHHHHHHHHHHh-----cCCCCcccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEccccccccccCCCCCCC
Confidence            999763221111     111111122234458999999999999999986543   688999999999999999999999


Q ss_pred             CCccccch
Q psy2302         244 DDSYCVQR  251 (292)
Q Consensus       244 ~~~~C~~~  251 (292)
                      +   |..-
T Consensus       333 ~---~~~~  337 (637)
T TIGR03693       333 S---CEKD  337 (637)
T ss_pred             C---CCCc
Confidence            9   7743

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>KOG2018|consensus

Probab=99.90  E-value=3.5e-24  Score=190.92  Aligned_cols=132  Identities=32%  Similarity=0.505  Sum_probs=122.9

Q ss_pred             CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCC
Q psy2302           6 MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINP   84 (292)
Q Consensus         6 ~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np   84 (292)
                      +|. +.|++|+++-|+|||+||+||+++.+|+|+|+++|.|||+|.|+++.||||- ....|+|.||+.++++.++++.|
T Consensus        64 fGe-e~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaP  142 (430)
T KOG2018|consen   64 FGE-EGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAP  142 (430)
T ss_pred             hhh-hHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCc
Confidence            788 9999999999999999999999999999999999999999999999999987 57899999999999999999999


Q ss_pred             CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      +++|++.+.-.+. ++-++++      +..+|+|+||.||..++.-+-++|.++++++|.+
T Consensus       143 w~eIdar~~l~~~-~s~edll------~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss  196 (430)
T KOG2018|consen  143 WCEIDARNMLWTS-SSEEDLL------SGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISS  196 (430)
T ss_pred             cceecHHHhhcCC-Cchhhhh------cCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEec
Confidence            9999998877775 6666665      3689999999999999999999999999999865

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.90  E-value=1e-23  Score=184.73  Aligned_cols=105  Identities=18%  Similarity=0.214  Sum_probs=94.2

Q ss_pred             cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC
Q psy2302           5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP   84 (292)
Q Consensus         5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np   84 (292)
                      .||. ++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||||...++|++|+++++++|+++||
T Consensus        15 LwG~-EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eLNP   93 (287)
T PTZ00245         15 LWGK-STQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRLNP   93 (287)
T ss_pred             HhCH-HHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHHCC
Confidence            3999 999999999999999999999999999999999999999999999999999864457899999999999999999


Q ss_pred             CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      +++|+.++.+++. .             .++++||.+.-+
T Consensus        94 ~V~V~~i~~rld~-~-------------n~fqvvV~~~~~  119 (287)
T PTZ00245         94 HVSVYDAVTKLDG-S-------------SGTRVTMAAVIT  119 (287)
T ss_pred             CcEEEEcccccCC-c-------------CCceEEEEEccc
Confidence            9999999877764 1             456776666544

>KOG2012|consensus

Probab=99.89  E-value=6.3e-24  Score=208.30  Aligned_cols=155  Identities=26%  Similarity=0.419  Sum_probs=139.3

Q ss_pred             CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHH
Q psy2302           6 MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITL   79 (292)
Q Consensus         6 ~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l   79 (292)
                      +|- +-|+||.+.|+++||+|++||+++++++.+||     |+|++.|.|.+|.||||||| |++.|||++|+++|++..
T Consensus       420 fG~-~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~  498 (1013)
T KOG2012|consen  420 FGA-KFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAA  498 (1013)
T ss_pred             hch-HHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHH
Confidence            566 78999999999999999999999999999999     48999999999999999987 799999999999999999


Q ss_pred             HhhCCCCeEEEEeccccch--hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEE
Q psy2302          80 QNINPDVTIEVHNFNITLL--RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQ  157 (292)
Q Consensus        80 ~~~np~v~v~~~~~~i~~~--~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~  157 (292)
                      +.+||+++|+++..++...  .-|.+      .++...|+|..|.||..+|.++.+-|+-+.+|++.+|+.|  ..|..+
T Consensus       499 ~~mNp~l~I~a~~~rvgpeTE~If~D------~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlG--TKGntQ  570 (1013)
T KOG2012|consen  499 RGMNPDLNIIALQNRVGPETEHIFND------EFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLG--TKGNTQ  570 (1013)
T ss_pred             HhcCCCceeeehhhccCcccccccch------hHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcC--Ccccee
Confidence            9999999999999888531  22222      2357899999999999999999999999999999999986  689999


Q ss_pred             eecCCCCCccCC
Q psy2302         158 LIIPGESACFAC  169 (292)
Q Consensus       158 ~~~p~~t~C~~C  169 (292)
                      ++.|.-|-.|.=
T Consensus       571 VvvPhlTEsY~S  582 (1013)
T KOG2012|consen  571 VVVPHLTESYGS  582 (1013)
T ss_pred             EEeccccccccc
Confidence            999998877753

>KOG2337|consensus

Probab=99.84  E-value=1.3e-20  Score=177.38  Aligned_cols=240  Identities=19%  Similarity=0.294  Sum_probs=161.9

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCC-ccCcCCCC---ChHHHHHHHHHHhhCCCCeE
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL-FFQPDQCG---LSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~-~~~~~diG---~~Ka~a~~~~l~~~np~v~v   88 (292)
                      +++.+.|++++|+|.+||.||++|...||+|||++|..+|+.+|-.|| +|+.+|.+   ++||++|+++|++++|.++.
T Consensus       336 d~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~a  415 (669)
T KOG2337|consen  336 DIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEA  415 (669)
T ss_pred             hhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccccc
Confidence            789999999999999999999999999999999999999999999997 47877764   99999999999999999999


Q ss_pred             EEEecccc-------ch--hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccccee----EE-
Q psy2302          89 EVHNFNIT-------LL--RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAV----SG-  154 (292)
Q Consensus        89 ~~~~~~i~-------~~--~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~----~G-  154 (292)
                      +.+...|.       ..  +.....++.....++..|+|+..+|+.+.|++-.-.+..+++..|++...-..+    .| 
T Consensus       416 tG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaALGFDsylVMRHG~  495 (669)
T KOG2337|consen  416 TGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAALGFDSYLVMRHGT  495 (669)
T ss_pred             cceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeeecccceeEEEecCC
Confidence            88876552       10  111111111112237899999999999999998888988998888876531111    01 


Q ss_pred             ---------EEEe--ecCC-CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCC-----
Q psy2302         155 ---------HIQL--IIPG-ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFG-----  217 (292)
Q Consensus       155 ---------~v~~--~~p~-~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~-----  217 (292)
                               +-.-  .+|+ +-+||.|-.--.+......+++.+.  |+.+-|. .+++|+-.|.|.+--++.++     
T Consensus       496 ~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQq--CTVtRPG-~a~IA~alAVELlvslLQhP~~~a~  572 (669)
T KOG2337|consen  496 GRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQ--CTVTRPG-VANIASALAVELLVSLLQHPLGYAQ  572 (669)
T ss_pred             CCcccccccccccccccCcccceeEeEcceecCCCcccccchhhe--eeccCCc-hhHHHHHHHHHHHHHHHhCcccccc
Confidence                     1111  1232 5689999864333333344555443  4433344 44555555667777776654     


Q ss_pred             C---------CCeeEEE-----eCCCCCeeeeec--cCCCCCCCccccchh-hhccc
Q psy2302         218 E---------VSWYLGY-----SALTDFFPKMKL--KPNPSCDDSYCVQRQ-KEFNA  257 (292)
Q Consensus       218 ~---------~~~~~~~-----d~~~~~~~~~~l--~~~p~C~~~~C~~~~-~~~~~  257 (292)
                      .         +...++.     .++-.+|..+.+  ++-++|.  .|+... .||.+
T Consensus       573 ~~s~~~~~n~~~tvLG~lPHQIRGfL~nFs~i~~~~~af~qC~--ACS~~Vi~ey~~  627 (669)
T KOG2337|consen  573 NSSEETEENEPTTVLGILPHQIRGFLHNFSNILPSTQAFDQCT--ACSEAVINEYKR  627 (669)
T ss_pred             CCCcccccCCCCcccccccHHHHHhhhhhhhhccccccccccc--hhhHHHHHHHHH
Confidence            1         1122221     122223443333  5588999  799865 33444

>KOG2012|consensus

Probab=99.76  E-value=2.3e-18  Score=169.50  Aligned_cols=131  Identities=21%  Similarity=0.362  Sum_probs=120.3

Q ss_pred             CChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCC
Q psy2302           6 MGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINP   84 (292)
Q Consensus         6 ~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np   84 (292)
                      +|- +++++|..++|+|.|+||+|-+||+||..+||+++||.|...+..++|..|| ++++|||++|+++..++|+++|+
T Consensus        27 lG~-eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~  105 (1013)
T KOG2012|consen   27 LGH-EAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNN  105 (1013)
T ss_pred             ccH-HHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhc
Confidence            566 8999999999999999999999999999999999999999999999999988 59999999999999999999999


Q ss_pred             CCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          85 DVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        85 ~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      .|.|..+...++. +    ++       ++|++||.+-...+....||++|+++++.+|.+.+.|
T Consensus       106 yV~V~v~t~~~~~-e----~L-------~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RG  158 (1013)
T KOG2012|consen  106 YVPVVVLTGPLTE-E----FL-------SDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRG  158 (1013)
T ss_pred             ceeeEEecCcccH-H----HH-------hCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccch
Confidence            9999999877653 2    22       7899999998889999999999999999999776653

>KOG2016|consensus

Probab=99.75  E-value=1.9e-18  Score=160.37  Aligned_cols=150  Identities=21%  Similarity=0.247  Sum_probs=134.5

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCcc-CcCCCCChHHHHHHHHHHh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSKVEAARITLQN   81 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~-~~~diG~~Ka~a~~~~l~~   81 (292)
                      ||.||. .+|..|..++|+++|||++|++++++|+..|||.|+++|+-.|+.++++.+|| ..+++|++||.+..+.|++
T Consensus        14 lRlwge-~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~Lqe   92 (523)
T KOG2016|consen   14 LRLWGE-EGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEFLQE   92 (523)
T ss_pred             HHHHHH-HhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHHHHH
Confidence            678999 99999999999999999999999999999999999999999999999999775 7899999999999999999


Q ss_pred             hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302          82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP  161 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p  161 (292)
                      +||+|.-....      ++.+.++.+.+.++..+++|+.+--+..+...+.+.|+++++|+++...+|  +.|.+.+.+.
T Consensus        93 LN~~V~~~~ve------e~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~G--l~G~iRI~ik  164 (523)
T KOG2016|consen   93 LNPSVSGSFVE------ESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYG--LAGTIRISIK  164 (523)
T ss_pred             hChhhhcCccc------cChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeec--ceEEEEEEee
Confidence            99999866554      344456677777889999999988888888999999999999999998874  8898877654

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein

Probab=99.65  E-value=1e-16  Score=120.01  Aligned_cols=81  Identities=30%  Similarity=0.560  Sum_probs=56.1

Q ss_pred             CCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeeccC
Q psy2302         162 GESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKLKP  239 (292)
Q Consensus       162 ~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l~~  239 (292)
                      |+++||+|+||..  .. ...+|...|+    ++++++++|+++|+|+||+|+|.+++  ++++.||+++++|+++++.+
T Consensus         1 g~~pC~rCl~p~~--~~-~~~~C~~~GV----lg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~k   73 (84)
T PF05237_consen    1 GKTPCYRCLFPEP--PE-SAPTCAEAGV----LGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIKK   73 (84)
T ss_dssp             -T---HHHHHTTS--S---TTSSSTS-B-----HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE---
T ss_pred             CCCceehhcCCCC--Cc-cCCCcccccc----ccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecCC
Confidence            4689999999976  11 3455677776    99999999999999999999998776  79999999999999999999


Q ss_pred             CCCCCCccccch
Q psy2302         240 NPSCDDSYCVQR  251 (292)
Q Consensus       240 ~p~C~~~~C~~~  251 (292)
                      +|+|+  +|+++
T Consensus        74 ~~~C~--~C~~~   83 (84)
T PF05237_consen   74 NPDCP--VCGPK   83 (84)
T ss_dssp             -TT-T--TT---
T ss_pred             CccCc--CcCcC
Confidence            99999  89964

The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=98.81  E-value=2e-08  Score=86.60  Aligned_cols=95  Identities=24%  Similarity=0.316  Sum_probs=72.3

Q ss_pred             HHHHHHhcCcEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          10 ENYEHIRTLTVIVVGVGGVGSV-TAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~GglGs~-va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      ++|++|++++|.|+|.|+.|+. ++..|+.+|++.+.                                           
T Consensus        98 ~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~-------------------------------------------  134 (193)
T TIGR03882        98 AALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP-------------------------------------------  134 (193)
T ss_pred             HHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-------------------------------------------
Confidence            5789999999999999999999 99999999999764                                           


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCCCCCccC
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFA  168 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~~t~C~~  168 (292)
                             ++               .+.++|+........-..+|+.+.+.++||+.....+ +.....+++.|+.|+||+
T Consensus       135 -------~~---------------a~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~-~~~~~gp~~~p~~~~c~~  191 (193)
T TIGR03882       135 -------SE---------------ADLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGG-VQPWIGPLFKPGKTGCWH  191 (193)
T ss_pred             -------CC---------------CCEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCC-ceEEECCeecCCCCcccc
Confidence                   00               1233443332222334568999999999999988865 233344788999999999


Q ss_pred             CC
Q psy2302         169 CA  170 (292)
Q Consensus       169 C~  170 (292)
                      |+
T Consensus       192 c~  193 (193)
T TIGR03882       192 CL  193 (193)
T ss_pred             cC
Confidence            96

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=98.72  E-value=3.1e-07  Score=75.67  Aligned_cols=117  Identities=23%  Similarity=0.283  Sum_probs=95.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHH---HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLT---RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La---~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ...|.++|||.+|--++..|.   |.|..+|.++|+.+|++.++-...+ -..+|.+|++.++ +|.+..+.-+++++..
T Consensus        18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~-Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~pE   95 (217)
T COG4015          18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL-GAKVGEYKVDFIK-RLGRVHFGRRVEAFPE   95 (217)
T ss_pred             CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh-CCCcchhHHHHHH-HhCcCCCCceeecccc
Confidence            456999999999999999998   7789999999999999998753222 3579999999886 5777788889999999


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc---CCHHHHHHHHHHHHHhCCceeec
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV---DNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~---d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      .|+. +|+..+         .-|+|+.|.   |+.++...|.++|++.|+..|..
T Consensus        96 ~it~-dNlhll---------~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT  140 (217)
T COG4015          96 NITK-DNLHLL---------KGDVVVICIAGGDTIPVTAAIINYAKERGIKTIST  140 (217)
T ss_pred             cccc-cchhhh---------cCCEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence            9987 777654         238777664   67788888999999999987754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.50  E-value=1.1e-06  Score=83.16  Aligned_cols=101  Identities=27%  Similarity=0.418  Sum_probs=77.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ++|+|+|+|++|+.+|..|++.|.+++++.|...                      .-.+++...... ++++..-++.+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~----------------------~~~~~i~~~~~~-~v~~~~vD~~d   58 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK----------------------EKCARIAELIGG-KVEALQVDAAD   58 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH----------------------HHHHHHHhhccc-cceeEEecccC
Confidence            5899999999999999999999999999988432                      111222222211 67777777777


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      .+.+.++|       .++|+||++...+-.. .+-++|.+.|+++++....+
T Consensus        59 ~~al~~li-------~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          59 VDALVALI-------KDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             hHHHHHHH-------hcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence            67777877       6789999999887665 67889999999999886654

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.22  E-value=6.1e-06  Score=75.43  Aligned_cols=77  Identities=22%  Similarity=0.332  Sum_probs=60.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ++.++|+|+|+||.|..++..|+..|+++|+|+|.+.                  .|++.+++.+.+..+.+.+...   
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~------------------~ka~~la~~l~~~~~~~~~~~~---  183 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP------------------ARAAALADELNARFPAARATAG---  183 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH------------------HHHHHHHHHHHhhCCCeEEEec---
Confidence            5678999999999999999999999999999998653                  5899999998887776554322   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                          +++.+.+       .++|+||+||.
T Consensus       184 ----~~~~~~~-------~~aDiVInaTp  201 (284)
T PRK12549        184 ----SDLAAAL-------AAADGLVHATP  201 (284)
T ss_pred             ----cchHhhh-------CCCCEEEECCc
Confidence                2222222       67999999974

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.18  E-value=1e-05  Score=65.73  Aligned_cols=79  Identities=19%  Similarity=0.306  Sum_probs=58.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|+|+||.|..++..|...|+.+|+++..+.                  .|++.+++.+    +...+.....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~------------------~ra~~l~~~~----~~~~~~~~~~   66 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP------------------ERAEALAEEF----GGVNIEAIPL   66 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH------------------HHHHHHHHHH----TGCSEEEEEG
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH------------------HHHHHHHHHc----CccccceeeH
Confidence            68999999999999999999999999999999976321                  3676666665    3444444432


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE  126 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~  126 (292)
                           +++.+.+       .++|+||.||....
T Consensus        67 -----~~~~~~~-------~~~DivI~aT~~~~   87 (135)
T PF01488_consen   67 -----EDLEEAL-------QEADIVINATPSGM   87 (135)
T ss_dssp             -----GGHCHHH-------HTESEEEE-SSTTS
T ss_pred             -----HHHHHHH-------hhCCeEEEecCCCC
Confidence                 3333333       58999999998653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.07  E-value=3.4e-05  Score=67.04  Aligned_cols=92  Identities=13%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|||.|.+|...++.|...| .++++++++.      .                  +.+.++.+.-.+.....
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~------------------~~l~~l~~~~~i~~~~~   61 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T------------------ENLVKLVEEGKIRWKQK   61 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C------------------HHHHHHHhCCCEEEEec
Confidence            578999999999999999999999999 6899997542      1                  11112211222333332


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                      .... ..           +.++|+||.||++.+.-..|.+.| +.++++-
T Consensus        62 ~~~~-~~-----------l~~adlViaaT~d~elN~~i~~~a-~~~~lvn   98 (202)
T PRK06718         62 EFEP-SD-----------IVDAFLVIAATNDPRVNEQVKEDL-PENALFN   98 (202)
T ss_pred             CCCh-hh-----------cCCceEEEEcCCCHHHHHHHHHHH-HhCCcEE
Confidence            2221 11           268999999999999989999999 5566543

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.95  E-value=5.6e-05  Score=71.81  Aligned_cols=96  Identities=24%  Similarity=0.412  Sum_probs=68.2

Q ss_pred             EEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL   98 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~   98 (292)
                      |+|+|+|.+|+.+++.|++.+- .++++.|.+.                  .|++.+.+.+    ...+++....++.+.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~------------------~~~~~~~~~~----~~~~~~~~~~d~~~~   58 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP------------------EKAERLAEKL----LGDRVEAVQVDVNDP   58 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH------------------HHHHHHHT------TTTTEEEEE--TTTH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH------------------HHHHHHHhhc----cccceeEEEEecCCH
Confidence            7899999999999999999884 4999998655                  1333333322    345677777777776


Q ss_pred             hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          99 RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        99 ~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      +.+.+++       .++|+||+|...+ ....+-++|.+.|+++++.
T Consensus        59 ~~l~~~~-------~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   59 ESLAELL-------RGCDVVINCAGPF-FGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             HHHHHHH-------TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred             HHHHHHH-------hcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence            7777777       7899999999887 5567889999999999984

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.93  E-value=0.0001  Score=64.27  Aligned_cols=95  Identities=20%  Similarity=0.154  Sum_probs=69.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|||.|.+|..-++.|...|. ++++++++.-                 +.   +. .+.+   .-+++.+..
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-----------------~~---l~-~l~~---~~~i~~~~~   60 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-----------------SE---LT-LLAE---QGGITWLAR   60 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-----------------HH---HH-HHHH---cCCEEEEeC
Confidence            4788999999999999999999999995 7999997531                 01   11 1111   124555554


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      .... +.    +       .++++||.|+++.+.-..|-..|.+.++++-.+
T Consensus        61 ~~~~-~d----l-------~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        61 CFDA-DI----L-------EGAFLVIAATDDEELNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             CCCH-HH----h-------CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence            4332 22    2       689999999999988889999999999987433

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.86  E-value=2.6e-05  Score=60.36  Aligned_cols=89  Identities=20%  Similarity=0.221  Sum_probs=63.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|||.|.+|..-++.|..+| .+++++.++. +.                    .+       ..+++  ...
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~--------------------~~-------~~i~~--~~~   52 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF--------------------SE-------GLIQL--IRR   52 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH--------------------HH-------TSCEE--EES
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh--------------------hh-------hHHHH--Hhh
Confidence            578999999999999999999999999 7899999875 10                    00       12222  222


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG  146 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~  146 (292)
                      .+      ++.       +.++++|+.|+++......|-+.|+++++|+-.+.
T Consensus        53 ~~------~~~-------l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   53 EF------EED-------LDGADLVFAATDDPELNEAIYADARARGILVNVVD   92 (103)
T ss_dssp             S-------GGG-------CTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred             hH------HHH-------HhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence            22      111       26899999999999999999999999999875443

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.80  E-value=9.4e-05  Score=67.79  Aligned_cols=85  Identities=14%  Similarity=0.258  Sum_probs=58.9

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +++++|+|+|+||+|.+++..|+..|+.++++++.+.-               ...|++.+++.+.+..+.+.+...  .
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~---------------~~~~a~~l~~~l~~~~~~~~~~~~--d  186 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD---------------FYERAEQTAEKIKQEVPECIVNVY--D  186 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch---------------HHHHHHHHHHHHhhcCCCceeEEe--c
Confidence            56789999999999999999999999999999875320               013666677777665555444322  2


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+.+.+       ..+|+||+||.
T Consensus       187 ~~~~~~~~~~~-------~~~DilINaTp  208 (289)
T PRK12548        187 LNDTEKLKAEI-------ASSDILVNATL  208 (289)
T ss_pred             hhhhhHHHhhh-------ccCCEEEEeCC
Confidence            33223343333       56899999984

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.79  E-value=0.0002  Score=59.80  Aligned_cols=85  Identities=13%  Similarity=0.257  Sum_probs=61.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|||.|.+|...++.|...|. ++++|+++..+                        .+.++ +.  ++....
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~------------------------~l~~l-~~--i~~~~~   61 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK------------------------EMKEL-PY--ITWKQK   61 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH------------------------HHHhc-cC--cEEEec
Confidence            6889999999999999999999999995 78898765421                        11111 12  222232


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL  138 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~  138 (292)
                      .+.. .+           +.++|+||.+||+.+.-..+...|.++
T Consensus        62 ~~~~-~d-----------l~~a~lViaaT~d~e~N~~i~~~a~~~   94 (157)
T PRK06719         62 TFSN-DD-----------IKDAHLIYAATNQHAVNMMVKQAAHDF   94 (157)
T ss_pred             ccCh-hc-----------CCCceEEEECCCCHHHHHHHHHHHHHC
Confidence            2221 11           268999999999999988888888774

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.72  E-value=0.00019  Score=65.61  Aligned_cols=79  Identities=25%  Similarity=0.327  Sum_probs=56.2

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +++++|+|+|+||.|.+++..|+..|+.+|+|+|.+.                  .|++.+++++....+...+....  
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~------------------~ka~~La~~~~~~~~~~~~~~~~--  184 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT------------------SRAQALADVINNAVGREAVVGVD--  184 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH------------------HHHHHHHHHHhhccCcceEEecC--
Confidence            5578999999999999999999999999999987542                  38888888776544432222211  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                         ..++...+       ..+|+||+||.
T Consensus       185 ---~~~~~~~~-------~~~divINaTp  203 (283)
T PRK14027        185 ---ARGIEDVI-------AAADGVVNATP  203 (283)
T ss_pred             ---HhHHHHHH-------hhcCEEEEcCC
Confidence               11222222       46999999985

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.59  E-value=0.00095  Score=58.80  Aligned_cols=95  Identities=11%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++|+|||.|.++..=+..|...| .++++|-++.-+                        .+.++...-+++....
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~------------------------el~~l~~~~~i~~~~r   76 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK------------------------EFLDLKKYGNLKLIKG   76 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH------------------------HHHHHHhCCCEEEEeC
Confidence            456889999999999999999999998 679998876421                        1111111122444444


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      .... +++           .++++||.|||+.+.-..|.+.|.+.++++..+
T Consensus        77 ~~~~-~dl-----------~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~v  116 (223)
T PRK05562         77 NYDK-EFI-----------KDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDC  116 (223)
T ss_pred             CCCh-HHh-----------CCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence            4432 222           689999999999999999999999998876544

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.58  E-value=0.00023  Score=65.23  Aligned_cols=84  Identities=14%  Similarity=0.211  Sum_probs=56.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +++++|+|+|+||.+.+++..|+..|+.+|+|++.+.               -...|++.+++++....+ ..+....  
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~---------------~~~~ka~~la~~~~~~~~-~~~~~~~--  183 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD---------------EFFDKALAFAQRVNENTD-CVVTVTD--  183 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc---------------cHHHHHHHHHHHhhhccC-ceEEEec--
Confidence            5778999999999999999999999999999987431               013478888777754332 2222221  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +...+.+.+.       ..++|+||+||.
T Consensus       184 ~~~~~~l~~~-------~~~aDivINaTp  205 (288)
T PRK12749        184 LADQQAFAEA-------LASADILTNGTK  205 (288)
T ss_pred             hhhhhhhhhh-------cccCCEEEECCC
Confidence            1110112221       257999999984

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.57  E-value=0.00092  Score=59.06  Aligned_cols=98  Identities=18%  Similarity=0.257  Sum_probs=67.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHh-hCCCCeEEEEecccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQN-INPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~-~np~v~v~~~~~~i~   96 (292)
                      ++++|+|+|.+|..+|+.|+..|- .+++||.|.                         +++.+ ........++...-+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~-------------------------~~~~~~~~~~~~~~~v~gd~t   54 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE-------------------------ERVEEFLADELDTHVVIGDAT   54 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH-------------------------HHHHHHhhhhcceEEEEecCC
Confidence            479999999999999999999985 477777665                         22222 111233445555545


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHH-hCCceeecCc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ-LGQTWFESGV  147 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~-~~~p~i~~~~  147 (292)
                      +.+-+.+.      -..++|+++.++++...-..+-..+.+ +|+|.+.+.+
T Consensus        55 ~~~~L~~a------gi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~  100 (225)
T COG0569          55 DEDVLEEA------GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA  100 (225)
T ss_pred             CHHHHHhc------CCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence            43444332      237899999999998777777776665 7888876644

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.42  E-value=0.00048  Score=62.90  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=53.4

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +++++|+|+|+||.|..++..|+..|+.+++|++.+.                  .|++.+++++.... .  +....  
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~------------------~ka~~La~~~~~~~-~--~~~~~--  179 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP------------------DKLSRLVDLGVQVG-V--ITRLE--  179 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH------------------HHHHHHHHHhhhcC-c--ceecc--
Confidence            4678999999999999999999999999999986431                  37777776654321 1  11111  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                        ..+++...+       .++|+||+||.-
T Consensus       180 --~~~~~~~~~-------~~~DiVInaTp~  200 (282)
T TIGR01809       180 --GDSGGLAIE-------KAAEVLVSTVPA  200 (282)
T ss_pred             --chhhhhhcc-------cCCCEEEECCCC
Confidence              001222222       579999999864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.34  E-value=0.0012  Score=57.77  Aligned_cols=94  Identities=20%  Similarity=0.192  Sum_probs=65.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|||.|.+|..=++.|..+| .+++++-++. +                +....    +.+.+   ++.....
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-~----------------~el~~----~~~~~---~i~~~~~   63 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-E----------------PELKA----LIEEG---KIKWIER   63 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-c----------------HHHHH----HHHhc---Ccchhhc
Confidence            578999999999999999999999999 5677776655 1                11111    11111   1222222


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceee
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFE  144 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~  144 (292)
                      .... +   +        +.++++||.|||+...-..|.+.|.++++|.-.
T Consensus        64 ~~~~-~---~--------~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv  102 (210)
T COG1648          64 EFDA-E---D--------LDDAFLVIAATDDEELNERIAKAARERRILVNV  102 (210)
T ss_pred             ccCh-h---h--------hcCceEEEEeCCCHHHHHHHHHHHHHhCCceec
Confidence            2111 1   1        146999999999999999999999999987643

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.33  E-value=0.00063  Score=64.96  Aligned_cols=76  Identities=22%  Similarity=0.371  Sum_probs=57.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|||+|-.|.-+|++|...|+.+|++          +||.+        -|+.-+++++.     .++..   
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I----------aNRT~--------erA~~La~~~~-----~~~~~---  228 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI----------ANRTL--------ERAEELAKKLG-----AEAVA---  228 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE----------EcCCH--------HHHHHHHHHhC-----Ceeec---
Confidence            478999999999999999999999999999999          55642        36666666654     22221   


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE  126 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~  126 (292)
                          .+++.+.+       .++|+||.+|..+.
T Consensus       229 ----l~el~~~l-------~~~DvVissTsa~~  250 (414)
T COG0373         229 ----LEELLEAL-------AEADVVISSTSAPH  250 (414)
T ss_pred             ----HHHHHHhh-------hhCCEEEEecCCCc
Confidence                24555554       78999999987654

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.002  Score=59.02  Aligned_cols=99  Identities=20%  Similarity=0.250  Sum_probs=66.9

Q ss_pred             ccCChHHHHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302           4 KRMGIVENYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus         4 ~~~G~~~~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      ..|+. .....+++++|+|.|+ |++|.++++.|++.|. ++.+++.+.                  .+.+.+.+.+.+.
T Consensus         4 ~~~~~-~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~------------------~~~~~~~~~l~~~   63 (306)
T PRK06197          4 TKWTA-ADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNL------------------DKGKAAAARITAA   63 (306)
T ss_pred             CCCCc-cccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHh
Confidence            34555 4445678899999986 8999999999999997 577766432                  2444455556655


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .+..++..+..++++.+.+..++++....+.+.|+||.+.
T Consensus        64 ~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nA  103 (306)
T PRK06197         64 TPGADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNA  103 (306)
T ss_pred             CCCCceEEEECCCCCHHHHHHHHHHHHhhCCCCCEEEECC
Confidence            5556677777777776666655443322345788888765

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0017  Score=59.27  Aligned_cols=76  Identities=14%  Similarity=0.268  Sum_probs=54.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +.++|+|+|+||.+.+++..|+..|+.+|+|+....                  .|++.+++++.+..+.+......   
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~------------------~ra~~La~~~~~~~~~~~~~~~~---  183 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR------------------ERAEELADLFGELGAAVEAAALA---  183 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH------------------HHHHHHHHHhhhccccccccccc---
Confidence            468999999999999999999999999999976432                  47888888877776522221111   


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                          ....        ...+|+||+||.-
T Consensus       184 ----~~~~--------~~~~dliINaTp~  200 (283)
T COG0169         184 ----DLEG--------LEEADLLINATPV  200 (283)
T ss_pred             ----cccc--------ccccCEEEECCCC
Confidence                1110        0259999999853

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.13  E-value=0.0024  Score=59.06  Aligned_cols=83  Identities=19%  Similarity=0.297  Sum_probs=57.1

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +.+.+|+|+|+|.+|..+++.|...|+.+++++|.+.                  .|+..+++.+.    . .+  ..  
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~------------------~ra~~la~~~g----~-~~--~~--  228 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY------------------ERAEELAKELG----G-NA--VP--  228 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH------------------HHHHHHHHHcC----C-eE--Ee--
Confidence            5789999999999999999999998999999988543                  24444444331    1 11  11  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHH
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMA  134 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~  134 (292)
                         .+++.+.+       .++|+||.|+..+.....+.+.
T Consensus       229 ---~~~~~~~l-------~~aDvVi~at~~~~~~~~~~~~  258 (311)
T cd05213         229 ---LDELLELL-------NEADVVISATGAPHYAKIVERA  258 (311)
T ss_pred             ---HHHHHHHH-------hcCCEEEECCCCCchHHHHHHH
Confidence               13344444       5799999999987663333433

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.11  E-value=0.0021  Score=55.17  Aligned_cols=84  Identities=21%  Similarity=0.235  Sum_probs=56.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|+|. |++|..++..|+..| .++++++.+                  ..|++.+.+.+.+.. ..++... 
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~------------------~~~~~~l~~~l~~~~-~~~~~~~-   83 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD------------------LERAQKAADSLRARF-GEGVGAV-   83 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC------------------HHHHHHHHHHHHhhc-CCcEEEe-
Confidence            567899999996 999999999999988 488887643                  235666666665332 3333332 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE  126 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~  126 (292)
                       ...+.+++.+.+       .++|+||.++....
T Consensus        84 -~~~~~~~~~~~~-------~~~diVi~at~~g~  109 (194)
T cd01078          84 -ETSDDAARAAAI-------KGADVVFAAGAAGV  109 (194)
T ss_pred             -eCCCHHHHHHHH-------hcCCEEEECCCCCc
Confidence             222234444444       68999999987544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK09242 tropinone reductase; Provisional

Probab=97.09  E-value=0.0039  Score=55.24  Aligned_cols=91  Identities=13%  Similarity=0.151  Sum_probs=66.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++++|.|+ |++|..+++.|+..|. ++++++.+.                  .+.+.+.+.+...+|..++..+.
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~   66 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA------------------DALAQARDELAEEFPEREVHGLA   66 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhhCCCCeEEEEE
Confidence            367889999986 7999999999999997 577776431                  24455666777777778888888


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        67 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag   97 (257)
T PRK09242         67 ADVSDDEDRRAILDWVEDHWDGLHILVNNAG   97 (257)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888766666555433333467899998874

>KOG4169|consensus

Probab=97.08  E-value=0.0015  Score=57.37  Aligned_cols=88  Identities=27%  Similarity=0.374  Sum_probs=67.9

Q ss_pred             HhcCcEEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVV-GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vv-G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++++++ |+||+|-.+++.|..-|+..+.+.|.-.    |                -.+..+|+++||.+++..+..
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n----------------~~a~akL~ai~p~~~v~F~~~   62 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N----------------PEAIAKLQAINPSVSVIFIKC   62 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C----------------HHHHHHHhccCCCceEEEEEe
Confidence            456777766 8999999999999999999988866321    2                234567999999999999999


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +++...++++.+++--..+...|++|+-.
T Consensus        63 DVt~~~~~~~~f~ki~~~fg~iDIlINgA   91 (261)
T KOG4169|consen   63 DVTNRGDLEAAFDKILATFGTIDILINGA   91 (261)
T ss_pred             ccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence            99876666655544444567899999764

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.06  E-value=0.0035  Score=66.43  Aligned_cols=98  Identities=16%  Similarity=0.246  Sum_probs=60.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCC-C------------eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGI-G------------KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gv-g------------~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      +.++|+|+|+|.+|..++..|++.+- .            .+++.|.+                  ..+++.+++.    
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~------------------~~~a~~la~~----  625 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY------------------LKDAKETVEG----  625 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC------------------HHHHHHHHHh----
Confidence            47799999999999999999998642 2            24444432                  2344433332    


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      .|.++  +...++++.+.+.+.+       .++|+||.|+... .-..+.+.|.++|+.++..
T Consensus       626 ~~~~~--~v~lDv~D~e~L~~~v-------~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~e  678 (1042)
T PLN02819        626 IENAE--AVQLDVSDSESLLKYV-------SQVDVVISLLPAS-CHAVVAKACIELKKHLVTA  678 (1042)
T ss_pred             cCCCc--eEEeecCCHHHHHHhh-------cCCCEEEECCCch-hhHHHHHHHHHcCCCEEEC
Confidence            34433  2233344445555544       5799999998763 3345666677777666544

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.06  E-value=0.0021  Score=58.54  Aligned_cols=37  Identities=14%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+++++|+|+|+||+|..++..|...|+.++++++.+
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~  156 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT  156 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3678899999999999999999999999999998753

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.04  E-value=0.0035  Score=57.86  Aligned_cols=33  Identities=39%  Similarity=0.630  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D   50 (292)
                      +||.|+|+|++|+.+|..|+..|+. +|.|+|.+
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~   34 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN   34 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3799999999999999999999985 89999964

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.01  E-value=0.0049  Score=53.40  Aligned_cols=113  Identities=21%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE-Ee
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV-HN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~-~~   92 (292)
                      .|++++|+|+|.|.+|..+++.|...|. +++++|.+.-.   +  +.+. +..|...+..  +.+....-++-+.. ..
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~---~--~~~~-~~~g~~~v~~--~~l~~~~~Dv~vp~A~~   95 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEA---V--ARAA-ELFGATVVAP--EEIYSVDADVFAPCALG   95 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---H--HHHH-HHcCCEEEcc--hhhccccCCEEEecccc
Confidence            5788999999999999999999999997 67788865310   0  0000 0001100000  11111122222211 11


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      .-++. +++.++         +.++|+....++-+...-.+...+.|+.|+..
T Consensus        96 ~~I~~-~~~~~l---------~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd  138 (200)
T cd01075          96 GVIND-DTIPQL---------KAKAIAGAANNQLADPRHGQMLHERGILYAPD  138 (200)
T ss_pred             cccCH-HHHHHc---------CCCEEEECCcCccCCHhHHHHHHHCCCEEeCc
Confidence            22332 444332         57888888777544334456677888887763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.00  E-value=0.0023  Score=61.57  Aligned_cols=77  Identities=17%  Similarity=0.362  Sum_probs=54.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+.+++|+|+|+|+.|..++.+|+..|+.+|+++...                  ..|++.+++.+.    ...+..   
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt------------------~~ra~~La~~~~----~~~~~~---  232 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT------------------IEKAQKITSAFR----NASAHY---  232 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC------------------HHHHHHHHHHhc----CCeEec---
Confidence            4678999999999999999999999999999995432                  125555555432    122111   


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE  126 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~  126 (292)
                          .+++.+.+       .++|+||.||..+.
T Consensus       233 ----~~~l~~~l-------~~aDiVI~aT~a~~  254 (414)
T PRK13940        233 ----LSELPQLI-------KKADIIIAAVNVLE  254 (414)
T ss_pred             ----HHHHHHHh-------ccCCEEEECcCCCC
Confidence                13444444       68999999998754

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0056  Score=54.48  Aligned_cols=91  Identities=20%  Similarity=0.313  Sum_probs=66.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++++|.|+ |++|.++++.|++.|.. +.+++.+.                  .|.+.+.+.+.+..+..++..+.
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE------------------ERLASAEARLREKFPGARLLAAR   65 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence            467889999987 68999999999999974 77766432                  24455566677777777788888


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.....+.+.|++|.+..
T Consensus        66 ~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag   96 (265)
T PRK07062         66 CDVLDEADVAAFAAAVEARFGGVDMLVNNAG   96 (265)
T ss_pred             ecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            8888777776655443333467899998764

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.99  E-value=0.0038  Score=49.85  Aligned_cols=94  Identities=18%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             cEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ||+|+|+ |..|..+++.+.. .|+.=...+|...        .-+--.|+|        +.+......+.+.       
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~--------~~~~g~d~g--------~~~~~~~~~~~v~-------   58 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP--------SAKVGKDVG--------ELAGIGPLGVPVT-------   58 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT--------STTTTSBCH--------HHCTSST-SSBEB-------
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------cccccchhh--------hhhCcCCcccccc-------
Confidence            7999999 9999999999998 6666566666543        011112332        1111111122221       


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                        +++++.+       ..+|+|||.+ +++.-...-++|.++++|++.+
T Consensus        59 --~~l~~~~-------~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViG   97 (124)
T PF01113_consen   59 --DDLEELL-------EEADVVIDFT-NPDAVYDNLEYALKHGVPLVIG   97 (124)
T ss_dssp             --S-HHHHT-------TH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE
T ss_pred             --hhHHHhc-------ccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEE
Confidence              4555554       5699999999 7777777888999999999865

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.97  E-value=0.0065  Score=59.27  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=68.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|||.|.++..=++.|..+|. ++++|-++.-                        +.++++...-+++....
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~------------------------~~~~~l~~~~~i~~~~~   63 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI------------------------PQFTAWADAGMLTLVEG   63 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC------------------------HHHHHHHhCCCEEEEeC
Confidence            6789999999999999999999999995 7888765421                        11222211224555554


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      .... ++    +       .++++||.|||+.+.-..|.+.|.+.++++-.+
T Consensus        64 ~~~~-~d----l-------~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         64 PFDE-SL----L-------DTCWLAIAATDDDAVNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             CCCh-HH----h-------CCCEEEEECCCCHHHhHHHHHHHHHcCcEEEEC
Confidence            4432 22    2       689999999999999999999999999865433

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.94  E-value=0.0031  Score=51.63  Aligned_cols=36  Identities=22%  Similarity=0.511  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++++|+|+|+|++|..+++.|...|..+++++|.+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            567999999999999999999999987789988754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.93  E-value=0.0037  Score=51.89  Aligned_cols=98  Identities=20%  Similarity=0.335  Sum_probs=59.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH--hhCCCCeEEEEecccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ--NINPDVTIEVHNFNIT   96 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~--~~np~v~v~~~~~~i~   96 (292)
                      ||+|+|+|..|+++|..|+..| .+++|.+.|.=                  .++.+.+.=.  ...|++++.. +..++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~------------------~~~~i~~~~~n~~~~~~~~l~~-~i~~t   60 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE------------------QIEEINETRQNPKYLPGIKLPE-NIKAT   60 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH------------------HHHHHHHHTSETTTSTTSBEET-TEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH------------------HHHHHHHhCCCCCCCCCcccCc-ccccc
Confidence            6999999999999999999999 67888776541                  1222221100  1123333322 11222


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHH--HhCCceeec
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACN--QLGQTWFES  145 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~--~~~~p~i~~  145 (292)
                        .++++.+       ++.|+||.++.....+..+.+...  +.+.+++..
T Consensus        61 --~dl~~a~-------~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~  102 (157)
T PF01210_consen   61 --TDLEEAL-------EDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA  102 (157)
T ss_dssp             --SSHHHHH-------TT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred             --cCHHHHh-------CcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence              4555555       789999999999988877776654  445555543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.91  E-value=0.0025  Score=53.78  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEcCChH-HHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGV-GSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~Ggl-Gs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|+|+|.|.. |..++++|.+.|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            478999999999985 8889999999998 6888773

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.006  Score=54.14  Aligned_cols=91  Identities=20%  Similarity=0.275  Sum_probs=64.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ |++|.++++.|+..|. ++.++|.+                  ..+.+.+.+.+.+.++..++..+.
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~------------------~~~~~~~~~~~~~~~~~~~~~~~~   64 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD------------------AALAERAAAAIARDVAGARVLAVP   64 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC------------------HHHHHHHHHHHHhccCCceEEEEE
Confidence            467889999975 7999999999999997 47776632                  235555666666655566777788


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus        65 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag   95 (260)
T PRK07063         65 ADVTDAASVAAAVAAAEEAFGPLDVLVNNAG   95 (260)
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            8887766666555433223457899988764

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.90  E-value=0.0049  Score=50.39  Aligned_cols=75  Identities=21%  Similarity=0.423  Sum_probs=51.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCC--eEEEEec
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDV--TIEVHNF   93 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v--~v~~~~~   93 (292)
                      .||.|+|+ |.+|+.+|..|...|+. +|.|+|.+.                  .|++..+.-|....+..  .+.... 
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~------------------~~~~g~a~Dl~~~~~~~~~~~~i~~-   61 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE------------------DKAEGEALDLSHASAPLPSPVRITS-   61 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH------------------HHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc------------------ccceeeehhhhhhhhhccccccccc-
Confidence            38999999 99999999999999974 599999643                  25555555566554333  222222 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                        .+.+.           +.++|+||.+...
T Consensus        62 --~~~~~-----------~~~aDivvitag~   79 (141)
T PF00056_consen   62 --GDYEA-----------LKDADIVVITAGV   79 (141)
T ss_dssp             --SSGGG-----------GTTESEEEETTST
T ss_pred             --ccccc-----------cccccEEEEeccc
Confidence              11122           2789999998865

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.83  E-value=0.001  Score=58.81  Aligned_cols=37  Identities=22%  Similarity=0.513  Sum_probs=35.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D   50 (292)
                      .+++.||+|+|+|+.|..++..|...|+.  +|+++|.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            58889999999999999999999999999  99999976

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.82  E-value=0.0078  Score=55.86  Aligned_cols=77  Identities=26%  Similarity=0.352  Sum_probs=51.4

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCC-eEEEEec
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDV-TIEVHNF   93 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v-~v~~~~~   93 (292)
                      +..||.|+|+|.+|+.+|..|+..|+. +|.|+|-+                  +.|+...+.-|+...|.. ++.... 
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~------------------~~~~~g~~~Dl~~~~~~~~~~~i~~-   65 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN------------------KEKAEGDAMDLSHAVPFTSPTKIYA-   65 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC------------------CchhHHHHHHHHhhccccCCeEEEe-
Confidence            356999999999999999999999985 79999852                  234445555555554322 121111 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                           .+++++        .++|+||.+...
T Consensus        66 -----~~~~~~--------~~adivIitag~   83 (315)
T PRK00066         66 -----GDYSDC--------KDADLVVITAGA   83 (315)
T ss_pred             -----CCHHHh--------CCCCEEEEecCC
Confidence                 233332        689998887653

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.80  E-value=0.0032  Score=60.69  Aligned_cols=37  Identities=24%  Similarity=0.592  Sum_probs=33.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+.+++|+|+|+|.+|..+++.|...|+.+++++|.+
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs  213 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT  213 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3678999999999999999999999999999998753

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.0085  Score=53.27  Aligned_cols=91  Identities=20%  Similarity=0.195  Sum_probs=60.8

Q ss_pred             HHhcCcEEEEcC-C-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-G-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .+++++++|.|. | |+|..+++.|+..|.. +.++|.+                  ..+.+...+.+++..+..++..+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~   74 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIH------------------ERRLGETADELAAELGLGRVEAV   74 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCC------------------HHHHHHHHHHHHHhcCCceEEEE
Confidence            456789999997 5 7999999999999975 7776532                  12444455556554444456667


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|+||.+..
T Consensus        75 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag  106 (262)
T PRK07831         75 VCDVTSEAQVDALIDAAVERLGRLDVLVNNAG  106 (262)
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            77777666666554432222357899888874

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.72  E-value=0.011  Score=54.82  Aligned_cols=74  Identities=15%  Similarity=0.324  Sum_probs=50.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC---CeEEEEecc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD---VTIEVHNFN   94 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~---v~v~~~~~~   94 (292)
                      ||.|||+|.+|+.+|..|+..|+ ++|.|+|-.                  +.|++.-+.-|+...+.   ..++.+.  
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~------------------~~~a~g~a~DL~~~~~~~~~~~~~i~~--   60 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN------------------EGVAEGEALDFHHATALTYSTNTKIRA--   60 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC------------------cchhhHHHHHHHhhhccCCCCCEEEEE--
Confidence            69999999999999999999897 689999842                  23444444555554331   1222222  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                          .+++++        .++|+||.+...
T Consensus        61 ----~~y~~~--------~~aDivvitaG~   78 (307)
T cd05290          61 ----GDYDDC--------ADADIIVITAGP   78 (307)
T ss_pred             ----CCHHHh--------CCCCEEEECCCC
Confidence                234333        799999988764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.71  E-value=0.0027  Score=59.06  Aligned_cols=37  Identities=30%  Similarity=0.603  Sum_probs=32.7

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++..||.|||+|.+|+.+|..|+..|..++.|+|-+.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~   40 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK   40 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            4568999999999999999999999986799999643

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.0082  Score=53.76  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=59.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.+++.+.                  .+.+...+.+.......++..+.
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~   64 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNP------------------DKLAAAAEEIEALKGAGAVRYEP   64 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHHHhccCCCceEEEE
Confidence            467899999997 8999999999999998 677776432                  13333334444433334566666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        65 ~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ag   95 (276)
T PRK05875         65 ADVTDEDQVARAVDAATAWHGRLHGVVHCAG   95 (276)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6776656665554432222347899887763

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.70  E-value=0.0049  Score=46.35  Aligned_cols=88  Identities=19%  Similarity=0.215  Sum_probs=53.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC--CeEEEE-eCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI--GKLILF-DYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv--g~i~lv-D~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ||.|||+|.+|+.++..|.+.|+  .++.++ +.+.                  .|++    ++.+..+ +.+..     
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~------------------~~~~----~~~~~~~-~~~~~-----   52 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP------------------EKAA----ELAKEYG-VQATA-----   52 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH------------------HHHH----HHHHHCT-TEEES-----
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH------------------HHHH----HHHHhhc-ccccc-----
Confidence            68999999999999999999994  455543 4322                  1332    2333333 22221     


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHH-HHHhCCceee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMA-CNQLGQTWFE  144 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~-~~~~~~p~i~  144 (292)
                         .+..+.+       ...|+||.|+........+.+. ....+..+|+
T Consensus        53 ---~~~~~~~-------~~advvilav~p~~~~~v~~~i~~~~~~~~vis   92 (96)
T PF03807_consen   53 ---DDNEEAA-------QEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS   92 (96)
T ss_dssp             ---EEHHHHH-------HHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred             ---CChHHhh-------ccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence               1222333       4699999999998877777666 3344444443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.68  E-value=0.0026  Score=58.13  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD   48 (292)
                      .+++++|+|+|.|+ +|..++..|...|. ++++++
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~  190 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH  190 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            67899999999999 99999999999998 899876

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.67  E-value=0.0097  Score=57.59  Aligned_cols=36  Identities=36%  Similarity=0.542  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +++++|+|+|.|++|..+|..|+..|. +++++|.+.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            578999999999999999999999996 699988754

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.015  Score=53.66  Aligned_cols=90  Identities=24%  Similarity=0.365  Sum_probs=64.0

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++++|.| .+|+|.++++.|++.|. ++.+++.+.                  .|.+.+.+.|.+.++..++..+.
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~------------------~~~~~~~~~l~~~~~~~~v~~~~   71 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR------------------AKGEAAVAAIRTAVPDAKLSLRA   71 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhCCCCceEEEE
Confidence            46788888887 57899999999999995 677765322                  36666667777777777777778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.....+.+.|++|...
T Consensus        72 ~Dl~d~~sv~~~~~~~~~~~~~iD~li~nA  101 (313)
T PRK05854         72 LDLSSLASVAALGEQLRAEGRPIHLLINNA  101 (313)
T ss_pred             ecCCCHHHHHHHHHHHHHhCCCccEEEECC
Confidence            788776666655443222345788888664

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.017  Score=50.65  Aligned_cols=87  Identities=17%  Similarity=0.236  Sum_probs=62.6

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.| .|++|..+++.|++.|. ++++++.+.                  .+.+.+.+.+.+.+|..++..+..++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~D~   62 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT------------------DRLEELKAELLARYPGIKVAVAALDV   62 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhhCCCceEEEEEcCC
Confidence            46788886 78999999999999995 788876532                  23445556666777788888888888


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+...++.-...+.+.|+||.+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~id~vi~~a   89 (248)
T PRK08251         63 NDHDQVFEVFAEFRDELGGLDRVIVNA   89 (248)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            876666655543222345789888875

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.61  E-value=0.0063  Score=55.32  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=31.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++|+|+|+||.+.+++..|...|+.+++|++.+
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  155 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN  155 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4589999999999999999999999999998754

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.57  E-value=0.0048  Score=57.38  Aligned_cols=36  Identities=22%  Similarity=0.561  Sum_probs=32.7

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .++.||.|||+|.+|+.++..|+..|+.++.|+|-+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~   38 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI   38 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence            357799999999999999999999998889999964

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.55  E-value=0.016  Score=51.16  Aligned_cols=89  Identities=25%  Similarity=0.336  Sum_probs=59.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                  .+.+.+.+.+.+.  ..++..+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~i~~~--~~~~~~~~   65 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDP------------------AKLAAAAESLKGQ--GLSAHALA   65 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CceEEEEE
Confidence            357889999986 9999999999999997 577766432                  2334444555443  24566666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|+||.+..
T Consensus        66 ~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag   96 (255)
T PRK07523         66 FDVTDHDAVRAAIDAFEAEIGPIDILVNNAG   96 (255)
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7777666666655433223457899888764

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.53  E-value=0.017  Score=50.53  Aligned_cols=88  Identities=23%  Similarity=0.288  Sum_probs=57.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|+ |++|..+++.|+..|. +++++|.+.                  .|.+.+.+.+++..+  ++..+..
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~   61 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQ------------------EKLEEAVAECGALGT--EVRGYAA   61 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--ceEEEEc
Confidence            56789999998 9999999999999996 588877432                  244445555554433  4445555


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|.||.+..
T Consensus        62 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag   91 (253)
T PRK08217         62 NVTDEEDVEATFAQIAEDFGQLNGLINNAG   91 (253)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            665545555444322112246788887764

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.51  E-value=0.0086  Score=49.17  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=62.9

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      |+|+|.| .+|+|.++++.|++.|-.++.+++.+                .-..+.+.+.+.+...  ..+++....+++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~----------------~~~~~~~~l~~~l~~~--~~~~~~~~~D~~   62 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS----------------EDSEGAQELIQELKAP--GAKITFIECDLS   62 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS----------------CHHHHHHHHHHHHHHT--TSEEEEEESETT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec----------------cccccccccccccccc--cccccccccccc
Confidence            4678886 78999999999999999999998765                0123455555666644  477888888887


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+..+++.....+...|++|.+..
T Consensus        63 ~~~~~~~~~~~~~~~~~~ld~li~~ag   89 (167)
T PF00106_consen   63 DPESIRALIEEVIKRFGPLDILINNAG   89 (167)
T ss_dssp             SHHHHHHHHHHHHHHHSSESEEEEECS
T ss_pred             ccccccccccccccccccccccccccc
Confidence            777776655443333468899997764

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.51  E-value=0.054  Score=53.53  Aligned_cols=89  Identities=20%  Similarity=0.250  Sum_probs=73.9

Q ss_pred             HHHHHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          11 NYEHIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        11 ~q~~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      -++-+.+++|+|-|+| ++||++++.+++.+.++|.++|.|.                  .|-..+...|++..|..++.
T Consensus       244 i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E------------------~~~~~i~~el~~~~~~~~~~  305 (588)
T COG1086         244 IGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE------------------YKLYLIDMELREKFPELKLR  305 (588)
T ss_pred             HHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch------------------HHHHHHHHHHHhhCCCcceE
Confidence            3567899999999765 6999999999999999999998765                  46667778999999999999


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .+-.++.+.+.+...++.     .++|+|+-|.
T Consensus       306 ~~igdVrD~~~~~~~~~~-----~kvd~VfHAA  333 (588)
T COG1086         306 FYIGDVRDRDRVERAMEG-----HKVDIVFHAA  333 (588)
T ss_pred             EEecccccHHHHHHHHhc-----CCCceEEEhh
Confidence            888888776777666632     4599999876

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.50  E-value=0.013  Score=51.34  Aligned_cols=87  Identities=16%  Similarity=0.193  Sum_probs=58.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|+|+ |++|.++++.|+..|.. +++++.+.                  .+.+.+...+..   ..++..+..
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~---~~~~~~~~~   60 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNE------------------EAAERVAAEILA---GGRAIAVAA   60 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHhc---CCeEEEEEC
Confidence            56789999986 78999999999999976 88877543                  122333333333   345666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+.+...++.....+.+.|+||.+..
T Consensus        61 D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag   90 (251)
T PRK07231         61 DVSDEADVEAAVAAALERFGSVDILVNNAG   90 (251)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            777766666554332122357899988764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.50  E-value=0.0069  Score=58.48  Aligned_cols=36  Identities=25%  Similarity=0.495  Sum_probs=33.1

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +.+++|+|+|+|.+|..++..|...|+.+++++|.+
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~  215 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT  215 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            678999999999999999999999999999998754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.50  E-value=0.031  Score=43.36  Aligned_cols=87  Identities=24%  Similarity=0.292  Sum_probs=58.9

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccchh
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLR   99 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~~   99 (292)
                      |+|+|.|.+|..+++.|.. +--+++++|.|.=                  ++    +.+++..    +..+..+.++.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~------------------~~----~~~~~~~----~~~i~gd~~~~~   53 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE------------------RV----EELREEG----VEVIYGDATDPE   53 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH------------------HH----HHHHHTT----SEEEES-TTSHH
T ss_pred             eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH------------------HH----HHHHhcc----cccccccchhhh
Confidence            6899999999999999999 4468999998761                  11    2333222    335555555534


Q ss_pred             hHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302         100 KVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG  139 (292)
Q Consensus       100 ~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~  139 (292)
                      -+.+.      .+.+++.||.++++...-..+...+++.+
T Consensus        54 ~l~~a------~i~~a~~vv~~~~~d~~n~~~~~~~r~~~   87 (116)
T PF02254_consen   54 VLERA------GIEKADAVVILTDDDEENLLIALLARELN   87 (116)
T ss_dssp             HHHHT------TGGCESEEEEESSSHHHHHHHHHHHHHHT
T ss_pred             HHhhc------CccccCEEEEccCCHHHHHHHHHHHHHHC
Confidence            44322      13689999999999887777777777643

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.49  E-value=0.026  Score=54.52  Aligned_cols=93  Identities=23%  Similarity=0.283  Sum_probs=59.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .+|+|+|+|.+|..+++.|...|. .++++|.+.-                  +.+.    +++   ...+..+....++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~------------------~~~~----~~~---~~~~~~~~gd~~~   54 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE------------------RLRR----LQD---RLDVRTVVGNGSS   54 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH------------------HHHH----HHh---hcCEEEEEeCCCC
Confidence            379999999999999999999886 5788886541                  2222    211   1123344444443


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh-CCce
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL-GQTW  142 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~-~~p~  142 (292)
                      ...+.+.      ...++|.||.++++...-..+-..+++. +.+.
T Consensus        55 ~~~l~~~------~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~   94 (453)
T PRK09496         55 PDVLREA------GAEDADLLIAVTDSDETNMVACQIAKSLFGAPT   94 (453)
T ss_pred             HHHHHHc------CCCcCCEEEEecCChHHHHHHHHHHHHhcCCCe
Confidence            3333322      1268999999998877666666666665 4443

>PLN00203 glutamyl-tRNA reductase

Probab=96.47  E-value=0.0093  Score=59.02  Aligned_cols=78  Identities=26%  Similarity=0.398  Sum_probs=53.3

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      |.+++|+|||+|.+|..++++|...|+.++++++.+.                  .|++.+++.+    +.+.+....  
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~------------------era~~La~~~----~g~~i~~~~--  319 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE------------------ERVAALREEF----PDVEIIYKP--  319 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH------------------HHHHHHHHHh----CCCceEeec--
Confidence            5579999999999999999999999999999977432                  2444444433    233332211  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE  126 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~  126 (292)
                         .++..+.+       .++|+||.||....
T Consensus       320 ---~~dl~~al-------~~aDVVIsAT~s~~  341 (519)
T PLN00203        320 ---LDEMLACA-------AEADVVFTSTSSET  341 (519)
T ss_pred             ---HhhHHHHH-------hcCCEEEEccCCCC
Confidence               13333443       68999999986543

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.45  E-value=0.016  Score=50.82  Aligned_cols=86  Identities=13%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|..+++.|+..|. ++.+++.+.                    .+.+.+.+++..  .++..+..
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~--------------------~~~~~~~~~~~~--~~~~~~~~   59 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE--------------------PSETQQQVEALG--RRFLSLTA   59 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch--------------------HHHHHHHHHhcC--CceEEEEC
Confidence            57889999997 7999999999999997 577765321                    122334444433  34566677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...+++....+.+.|++|.+..
T Consensus        60 D~~~~~~~~~~~~~~~~~~~~~d~li~~ag   89 (248)
T TIGR01832        60 DLSDIEAIKALVDSAVEEFGHIDILVNNAG   89 (248)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777766666554432222357899988763

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.42  E-value=0.0069  Score=50.54  Aligned_cols=118  Identities=17%  Similarity=0.257  Sum_probs=64.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ++|.+||+|..|+.+|.+|++.|.. +++.|.+.-   .+.+.    .+.|-..++..++.+.+.  ++-+..    +.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~---~~~~~----~~~g~~~~~s~~e~~~~~--dvvi~~----v~~   67 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPE---KAEAL----AEAGAEVADSPAEAAEQA--DVVILC----VPD   67 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHH---HHHHH----HHTTEEEESSHHHHHHHB--SEEEE-----SSS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchh---hhhhh----HHhhhhhhhhhhhHhhcc--cceEee----ccc
Confidence            4899999999999999999999974 778874431   11110    000111111112222211  222222    222


Q ss_pred             hhhHHHHHhcCC--CCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          98 LRKVGALAVQGS--LTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        98 ~~~~~~~i~~~~--~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      .+..++.+....  ....+-.++||++. +++....+.+.+.++|+.|+++.+.+
T Consensus        68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G  122 (163)
T PF03446_consen   68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG  122 (163)
T ss_dssp             HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES
T ss_pred             chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec
Confidence            244444443311  11245677777755 56777889999999999999887765

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.42  E-value=0.014  Score=51.30  Aligned_cols=38  Identities=37%  Similarity=0.364  Sum_probs=35.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .|+.+||+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            67889999999999999999999999999999999654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK09186 flagellin modification protein A; Provisional

Probab=96.40  E-value=0.021  Score=50.35  Aligned_cols=89  Identities=17%  Similarity=0.268  Sum_probs=56.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.+++.+                  ..+.+.+.+.+....+.-.+.....
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~------------------~~~~~~~~~~l~~~~~~~~~~~~~~   62 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAADID------------------KEALNELLESLGKEFKSKKLSLVEL   62 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecC------------------hHHHHHHHHHHHhhcCCCceeEEEe
Confidence            45788999986 7999999999999996 46665421                  1344444555544333333444456


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+.+.++.....+.+.|+||.+.
T Consensus        63 Dl~d~~~~~~~~~~~~~~~~~id~vi~~A   91 (256)
T PRK09186         63 DITDQESLEEFLSKSAEKYGKIDGAVNCA   91 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence            66665666655543222335689999775

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.02  Score=50.62  Aligned_cols=87  Identities=13%  Similarity=0.193  Sum_probs=58.6

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++++|.|+ |++|.++++.|++.|. ++.+++.+                  ..+.+.+.+.++...  .++..+..
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~------------------~~~~~~~~~~l~~~~--~~~~~~~~   65 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARH------------------LDALEKLADEIGTSG--GKVVPVCC   65 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCC------------------HHHHHHHHHHHHhcC--CeEEEEEc
Confidence            66889999987 8999999999999997 46665532                  124445555555443  34556667


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+.+.++.....+.+.|++|.+.
T Consensus        66 D~~~~~~~~~~~~~~~~~~g~id~lv~~a   94 (253)
T PRK05867         66 DVSQHQQVTSMLDQVTAELGGIDIAVCNA   94 (253)
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            77766666655543322335789998765

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.38  E-value=0.019  Score=50.15  Aligned_cols=87  Identities=16%  Similarity=0.232  Sum_probs=58.0

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.| .|++|..+++.|++.|. ++++++.+.                  .|...+.+.+.+.++  ++..+..
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~   62 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICG------------------DDAAATAELVEAAGG--KARARQV   62 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--eEEEEEC
Confidence            5678999998 69999999999999997 577776543                  244444455554443  3556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+.+.+......+.++|+||.+.
T Consensus        63 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a   91 (251)
T PRK12826         63 DVRDRAALKAAVAAGVEDFGRLDILVANA   91 (251)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            67665666655433222234789988886

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.35  E-value=0.014  Score=57.13  Aligned_cols=125  Identities=11%  Similarity=0.115  Sum_probs=71.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCCh--HHHHHHHHHHhh-CCCCeEEEEecc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLS--KVEAARITLQNI-NPDVTIEVHNFN   94 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~--Ka~a~~~~l~~~-np~v~v~~~~~~   94 (292)
                      ++|.|||+|..|+.+|.+|++.|. ++++.|.+.=....+....   ..-|..  -+.-+++.++.+ .|++-+....  
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~---~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~--   75 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKA---KEGNTRVKGYHTLEELVNSLKKPRKVILLIK--   75 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhh---hhcCCcceecCCHHHHHhcCCCCCEEEEEeC--
Confidence            479999999999999999999997 6888886442211111000   000110  112233333332 2443333221  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCC-HHHHHHHHHHHHHhCCceeecCcccc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN-FEARMTINMACNQLGQTWFESGVSEN  150 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-~~~r~~in~~~~~~~~p~i~~~~~~~  150 (292)
                        ..+..++.++.....+.+-|+|||++.. +.......+.+.+.|+.|++++++|+
T Consensus        76 --~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG  130 (470)
T PTZ00142         76 --AGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG  130 (470)
T ss_pred             --ChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence              1123333332211123567999999865 44445556788889999999999873

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.34  E-value=0.018  Score=52.88  Aligned_cols=119  Identities=16%  Similarity=0.238  Sum_probs=69.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEeccccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~~~i~~   97 (292)
                      +|.|||+|..|+.++.+|++.|. ++++.|.+.-....+       .+.|..-+.-..+.+... ++++-+...+..-..
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~-------~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~   73 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL-------AEEGATGADSLEELVAKLPAPRVVWLMVPAGEIT   73 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH-------HHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence            69999999999999999999986 588888753211111       011221111222222222 345555544432110


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      .+-+..+..    .+.+-++||+++. ++.....+.+.+.+.|+.|+++.+++
T Consensus        74 ~~v~~~l~~----~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG  122 (301)
T PRK09599         74 DATIDELAP----LLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSG  122 (301)
T ss_pred             HHHHHHHHh----hCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCc
Confidence            012222221    1244578888854 45555667788999999999988876

>PRK04148 hypothetical protein; Provisional

Probab=96.34  E-value=0.047  Score=44.25  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=70.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++.+|++||+| .|..+|..|++.|. +++.+|-+.                  ..++.+++.      .  +++...++
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~------------------~aV~~a~~~------~--~~~v~dDl   67 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE------------------KAVEKAKKL------G--LNAFVDDL   67 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHh------C--CeEEECcC
Confidence            45789999999 99999999999995 788888544                  133333332      1  33444445


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      .+ .++.-        ++++|+|-..-..++....|-+.+.+.+.+++.--.++
T Consensus        68 f~-p~~~~--------y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         68 FN-PNLEI--------YKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             CC-CCHHH--------HhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            43 23321        37899999999999999999999999999988765443

>PRK06194 hypothetical protein; Provisional

Probab=96.33  E-value=0.025  Score=50.85  Aligned_cols=88  Identities=20%  Similarity=0.253  Sum_probs=57.1

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|++.|. +++++|.+.                  .+.+...+.+...  ..++..+..
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~   62 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQ------------------DALDRAVAELRAQ--GAEVLGVRT   62 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCCh------------------HHHHHHHHHHHhc--CCeEEEEEC
Confidence            45678999975 8999999999999997 578877532                  1222223333322  345667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        63 D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag   92 (287)
T PRK06194         63 DVSDAAQVEALADAALERFGAVHLLFNNAG   92 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            787766666555432223356899988764

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.026  Score=49.74  Aligned_cols=88  Identities=17%  Similarity=0.348  Sum_probs=57.6

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|..+++.|++.|. ++++++.+.                  .+.+.+.+.+.....  ++..+..
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~   65 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRV------------------ERLKELRAEIEAEGG--AAHVVSL   65 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--cEEEEEe
Confidence            56789999986 9999999999999997 577765432                  133344444444332  3555666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.+.+....+.+.|+||.+..
T Consensus        66 D~~~~~~~~~~~~~~~~~~~~~d~li~~ag   95 (258)
T PRK06949         66 DVTDYQSIKAAVAHAETEAGTIDILVNNSG   95 (258)
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            666656666554432223457899998775

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.33  E-value=0.032  Score=49.33  Aligned_cols=88  Identities=17%  Similarity=0.127  Sum_probs=58.7

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.|. |++|..+++.|+..|. ++.++|.+.                  .+.+...+.+...++..++..+..++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~D~   62 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINS------------------EKAANVAQEINAEYGEGMAYGFGADA   62 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHhcCCceeEEEEccC
Confidence            467888877 6899999999999986 678877432                  23334445555555445567777777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+...+++....+.+.|+||.+..
T Consensus        63 ~~~~~i~~~~~~~~~~~~~id~vv~~ag   90 (259)
T PRK12384         63 TSEQSVLALSRGVDEIFGRVDLLVYNAG   90 (259)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7666666555433223457899988763

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.32  E-value=0.027  Score=50.49  Aligned_cols=89  Identities=18%  Similarity=0.250  Sum_probs=57.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++++|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.  ..++..+.
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~   65 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQ------------------EKAEAVVAEIKAA--GGEALAVK   65 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEE
Confidence            467889999986 8999999999999998 688777532                  1333444444432  23566666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus        66 ~Dl~~~~~v~~~~~~~~~~~g~id~li~~ag   96 (278)
T PRK08277         66 ADVLDKESLEQARQQILEDFGPCDILINGAG   96 (278)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6776655555544332222357888887754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.32  E-value=0.0091  Score=54.69  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|.+++|+|+|.|++|..+++.|...|. +++++|.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R  182 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR  182 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5778999999999999999999999997 8888775

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.31  E-value=0.021  Score=50.90  Aligned_cols=89  Identities=20%  Similarity=0.163  Sum_probs=56.0

Q ss_pred             HHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .+++++++|.|+   +|+|.++++.|++.|. ++.+.+...       |        ...+.+.+++.+   . ..++..
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~-------~--------~~~~~~~~~~~~---~-~~~~~~   63 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGE-------R--------LEKEVRELADTL---E-GQESLL   63 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcc-------c--------chHHHHHHHHHc---C-CCceEE
Confidence            356789999998   5999999999999997 576665310       0        011222222222   1 235556


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +..++++.+.+..+++.....+.+.|++|.+.
T Consensus        64 ~~~Dv~d~~~v~~~~~~~~~~~g~ld~lv~na   95 (257)
T PRK08594         64 LPCDVTSDEEITACFETIKEEVGVIHGVAHCI   95 (257)
T ss_pred             EecCCCCHHHHHHHHHHHHHhCCCccEEEECc
Confidence            66777776666665544333346788888764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.31  E-value=0.033  Score=53.78  Aligned_cols=96  Identities=20%  Similarity=0.238  Sum_probs=62.9

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +...+|+|+|+|.+|..+++.|...|. +++++|.|.                  .+.    +++++..+++.  ....+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~------------------~~~----~~~~~~~~~~~--~i~gd  283 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP------------------ERA----EELAEELPNTL--VLHGD  283 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH------------------HHH----HHHHHHCCCCe--EEECC
Confidence            346899999999999999999999887 589998664                  012    22333333433  33334


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT  141 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p  141 (292)
                      .++.+.+.+.      ...++|.||.++++...-..+...+++.+.+
T Consensus       284 ~~~~~~L~~~------~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~  324 (453)
T PRK09496        284 GTDQELLEEE------GIDEADAFIALTNDDEANILSSLLAKRLGAK  324 (453)
T ss_pred             CCCHHHHHhc------CCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence            4433333221      1368999999998877666666667776554

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.026  Score=49.81  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++++|.|+ ||+|.++++.|++.|. ++.+++.+.                  .+.+.+.+.+++...  ++..+..
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~   62 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQ------------------AELDQLVAEIRAEGG--EAVALAG   62 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--cEEEEEc
Confidence            56788999986 7999999999999997 577766431                  355556666665543  4556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...+++....+.+.|++|.+..
T Consensus        63 D~~~~~~~~~~~~~~~~~~~~id~li~~ag   92 (254)
T PRK07478         63 DVRDEAYAKALVALAVERFGGLDIAFNNAG   92 (254)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            777666665554432222357898887663

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.29  E-value=0.021  Score=52.60  Aligned_cols=72  Identities=22%  Similarity=0.348  Sum_probs=50.7

Q ss_pred             EEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC---CeEEEEeccc
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD---VTIEVHNFNI   95 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~---v~v~~~~~~i   95 (292)
                      |.|||+|.+|+.+|..|+..|+ .+|+|+|.+.                  .|++..+..|....+.   +++..     
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~------------------~~~~g~~~DL~~~~~~~~~~~i~~-----   57 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE------------------EKAKGDALDLSHASAFLATGTIVR-----   57 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc------------------cHHHHHHHhHHHhccccCCCeEEE-----
Confidence            5799999999999999999997 6799999632                  3556666667766543   22221     


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      +  .+++++        .++|+||.+...
T Consensus        58 ~--~~~~~l--------~~aDiVIitag~   76 (300)
T cd00300          58 G--GDYADA--------ADADIVVITAGA   76 (300)
T ss_pred             C--CCHHHh--------CCCCEEEEcCCC
Confidence            1  223332        789999998864

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.28  E-value=0.025  Score=54.61  Aligned_cols=37  Identities=32%  Similarity=0.452  Sum_probs=33.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+.+++|+|+|+|.+|..+++.|...|+ +++++|.|.
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            3588999999999999999999999998 799988654

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.26  E-value=0.026  Score=50.66  Aligned_cols=87  Identities=13%  Similarity=0.088  Sum_probs=55.6

Q ss_pred             HhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ++++.++|.|++   |+|.++|+.|++.|. ++.+.|.+.                   |.+...+.+....+.  ...+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~-------------------~~~~~~~~~~~~~~~--~~~~   61 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-------------------KLKGRVEEFAAQLGS--DIVL   61 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch-------------------hHHHHHHHHHhccCC--ceEe
Confidence            677899999996   799999999999996 477766321                   111112222222232  2345


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+..+++.....+.+.|++|.+..
T Consensus        62 ~~Dl~~~~~v~~~~~~~~~~~g~iD~linnAg   93 (262)
T PRK07984         62 PCDVAEDASIDAMFAELGKVWPKFDGFVHSIG   93 (262)
T ss_pred             ecCCCCHHHHHHHHHHHHhhcCCCCEEEECCc
Confidence            66777767777665543334467899887764

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.035  Score=49.63  Aligned_cols=88  Identities=16%  Similarity=0.240  Sum_probs=60.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+++.. ..++..+..
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~-~~~~~~~~~   65 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNE------------------ENLKKAREKIKSES-NVDVSYIVA   65 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhhc-CCceEEEEe
Confidence            56788899987 6899999999999996 587777432                  24445555555443 345667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+..+++... .+.+.|++|.+..
T Consensus        66 Dv~~~~~i~~~~~~~~-~~g~iD~lv~nag   94 (263)
T PRK08339         66 DLTKREDLERTVKELK-NIGEPDIFFFSTG   94 (263)
T ss_pred             cCCCHHHHHHHHHHHH-hhCCCcEEEECCC
Confidence            7877677766654332 2467898887753

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.26  E-value=0.024  Score=52.53  Aligned_cols=74  Identities=26%  Similarity=0.347  Sum_probs=50.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCC---eEEEEe
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDV---TIEVHN   92 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v---~v~~~~   92 (292)
                      ..||.|||+|.+|+.+|..|+..|. .+|.|+|-..                  .|++..+.-|+...|..   ++... 
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~------------------~~~~g~a~Dl~~~~~~~~~~~v~~~-   63 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE------------------DKLKGEAMDLQHGSAFLKNPKIEAD-   63 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc------------------cHHHHHHHHHHHhhccCCCCEEEEC-
Confidence            3589999999999999999999997 5799998532                  24555555555554332   22211 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                            .+++++        .++|+||.+..
T Consensus        64 ------~dy~~~--------~~adivvitaG   80 (312)
T cd05293          64 ------KDYSVT--------ANSKVVIVTAG   80 (312)
T ss_pred             ------CCHHHh--------CCCCEEEECCC
Confidence                  234432        78999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.032  Score=50.88  Aligned_cols=88  Identities=25%  Similarity=0.305  Sum_probs=57.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|..+++.|++.|. ++.+++.+.                  .+.+.+.+.+   ....++..+.
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~l~~~~~~l---~~~~~~~~~~   63 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEE------------------AELAALAAEL---GGDDRVLTVV   63 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh---cCCCcEEEEE
Confidence            367889999986 8999999999999997 677776431                  2333333333   2234555555


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        64 ~Dv~d~~~v~~~~~~~~~~~g~id~vI~nAG   94 (296)
T PRK05872         64 ADVTDLAAMQAAAEEAVERFGGIDVVVANAG   94 (296)
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6777666665554432223357899988764

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.24  E-value=0.052  Score=53.44  Aligned_cols=125  Identities=14%  Similarity=0.114  Sum_probs=72.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCCh---HHHHHHHHHHhh-CCCCeEEEEec
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLS---KVEAARITLQNI-NPDVTIEVHNF   93 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~---Ka~a~~~~l~~~-np~v~v~~~~~   93 (292)
                      .+|.+||+|-.|+.+|.+|++.|. ++++.|.+.=....+...   ....|..   -+...++....+ .|++-+.....
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~---~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~   82 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER---AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKA   82 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh---hhhcCCcccccCCCHHHHHhcCCCCCEEEEECCC
Confidence            479999999999999999999996 577877542111111000   0000211   112222333222 24544443322


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC-HHHHHHHHHHHHHhCCceeecCcccc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN-FEARMTINMACNQLGQTWFESGVSEN  150 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-~~~r~~in~~~~~~~~p~i~~~~~~~  150 (292)
                          .+..++.+......+.+-|+|||++-. +.....+.+.+.+.|+.|++++++|+
T Consensus        83 ----~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG  136 (493)
T PLN02350         83 ----GAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG  136 (493)
T ss_pred             ----cHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence                133333321111123567899999775 56666778889999999999999873

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.23  E-value=0.01  Score=54.58  Aligned_cols=32  Identities=31%  Similarity=0.659  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .||.|+|+|.+|+.+|..|+..|.+++.|+|-
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            58999999999999999999998669999996

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.026  Score=49.49  Aligned_cols=87  Identities=20%  Similarity=0.269  Sum_probs=56.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|+ |++|..+++.|+..|. ++.+++.+.                  .+.+...+.+.   ...++..+..
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~---~~~~~~~~~~   60 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDA------------------EAAERVAAAIA---AGGRAFARQG   60 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCH------------------HHHHHHHHHHh---cCCeEEEEEc
Confidence            56789999977 7999999999999985 577766421                  12222233332   3456777777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.-...+.+.|+||.+..
T Consensus        61 D~~~~~~~~~~~~~i~~~~~~id~vi~~ag   90 (252)
T PRK06138         61 DVGSAEAVEALVDFVAARWGRLDVLVNNAG   90 (252)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777666665544332222357899988764

>PLN02602 lactate dehydrogenase

Probab=96.21  E-value=0.023  Score=53.54  Aligned_cols=32  Identities=38%  Similarity=0.520  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      .||.|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi   70 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV   70 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            699999999999999999999997 58999985

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.20  E-value=0.033  Score=56.50  Aligned_cols=90  Identities=16%  Similarity=0.327  Sum_probs=64.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +.+|+|+|+|.+|..+++.|.+.|+ +++++|.|.-                  +++.+    ++.  +  ...+..+.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~------------------~v~~~----~~~--g--~~v~~GDat  452 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD------------------HIETL----RKF--G--MKVFYGDAT  452 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH------------------HHHHH----Hhc--C--CeEEEEeCC
Confidence            4799999999999999999999997 5889998762                  23222    221  2  234555555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG  139 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~  139 (292)
                      +.+-+++    .  -.+++|+||.++|+.+.-..+-..++++.
T Consensus       453 ~~~~L~~----a--gi~~A~~vvv~~~d~~~n~~i~~~ar~~~  489 (621)
T PRK03562        453 RMDLLES----A--GAAKAEVLINAIDDPQTSLQLVELVKEHF  489 (621)
T ss_pred             CHHHHHh----c--CCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            5343332    1  13689999999999988877777777763

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.033  Score=50.79  Aligned_cols=89  Identities=17%  Similarity=0.273  Sum_probs=59.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                  .+.+.+.+.+....  .++..+.
T Consensus        37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~------------------~~l~~~~~~l~~~~--~~~~~~~   95 (293)
T PRK05866         37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARRE------------------DLLDAVADRITRAG--GDAMAVP   95 (293)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            567789999986 9999999999999996 677766431                  23444455554432  3456667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.....+.+.|+||.+..
T Consensus        96 ~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG  126 (293)
T PRK05866         96 CDLSDLDAVDALVADVEKRIGGVDILINNAG  126 (293)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7777666666555432222357899998763

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.18  E-value=0.017  Score=54.80  Aligned_cols=35  Identities=26%  Similarity=0.453  Sum_probs=31.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +..++|+|+|+|.+|..+++.|.+.|+ +++++|.+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            467889999999999999999999998 69999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.17  E-value=0.024  Score=51.57  Aligned_cols=105  Identities=10%  Similarity=0.099  Sum_probs=66.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRC----GI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~----Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      +|++.||+++|+|+-|..++++|..+    |+      ++|.++|.+=+=..       ...|+-..|...+++    .+
T Consensus        22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~-------~r~~l~~~~~~~a~~----~~   90 (279)
T cd05312          22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTK-------DRKDLTPFKKPFARK----DE   90 (279)
T ss_pred             ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeC-------CCCcchHHHHHHHhh----cC
Confidence            78999999999999999999999988    99      79999996542111       112333334443332    22


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      +       . .   ..++.+.++.     -++|++|-++.  ..-++..|...+.....|.|+.
T Consensus        91 ~-------~-~---~~~L~e~i~~-----v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa  138 (279)
T cd05312          91 E-------K-E---GKSLLEVVKA-----VKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA  138 (279)
T ss_pred             c-------c-c---CCCHHHHHHh-----cCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence            2       0 0   1344455521     27888888774  3345566666666666777754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.17  E-value=0.037  Score=48.43  Aligned_cols=88  Identities=15%  Similarity=0.150  Sum_probs=58.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|..+++.|++.|.. +.+++.+.                  .|.+...+.++...  .++..+..
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   63 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGLA------------------AEARELAAALEAAG--GRAHAIAA   63 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence            56789999986 89999999999999974 66654321                  23344445554443  34666677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+..+++.....+.+.|+||.+..
T Consensus        64 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   93 (250)
T PRK12939         64 DLADPASVQRFFDAAAAALGGLDGLVNNAG   93 (250)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777666666555432223357899998764

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.027  Score=50.26  Aligned_cols=88  Identities=25%  Similarity=0.269  Sum_probs=56.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.|+ |++|..+++.|+..|.. +.++|.+.                  .+.....+.+.+..+  ++..+.
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~   64 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRSQ------------------EKVDAAVAQLQQAGP--EGLGVS   64 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHHhCC--ceEEEE
Confidence            577899999987 89999999999999864 77777542                  123333444444433  345556


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|+||.+.
T Consensus        65 ~Dv~~~~~i~~~~~~~~~~~~~iD~vi~~a   94 (264)
T PRK07576         65 ADVRDYAAVEAAFAQIADEFGPIDVLVSGA   94 (264)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            667665656554433222235689988664

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.13  E-value=0.035  Score=49.15  Aligned_cols=89  Identities=20%  Similarity=0.264  Sum_probs=58.4

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.| .|++|..+++.|+..|. +++++|.+.                  .+.+.+.+.+...+  .++..+.
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~i~~~~--~~~~~~~   67 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKA------------------EELEEAAAHLEALG--IDALWIA   67 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeEEEEE
Confidence            57789999998 49999999999999997 677776432                  23444445554433  3455567


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...+......+.+.|.||.+..
T Consensus        68 ~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag   98 (259)
T PRK08213         68 ADVADEADIERLAEETLERFGHVDILVNNAG   98 (259)
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            7777666665444322112356898887753

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.12  E-value=0.035  Score=49.13  Aligned_cols=88  Identities=17%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .++++++++|.|+ |++|.++++.|+..|. ++.++|.+.                   ....+.+.+....  .++..+
T Consensus         4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~~~~~--~~~~~~   61 (260)
T PRK12823          4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSE-------------------LVHEVAAELRAAG--GEALAL   61 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCch-------------------HHHHHHHHHHhcC--CeEEEE
Confidence            3577889999977 7899999999999996 577766421                   1122333443332  345556


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++++.+.+...+++....+.+.|++|.+.
T Consensus        62 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~nA   92 (260)
T PRK12823         62 TADLETYAGAQAAMAAAVEAFGRIDVLINNV   92 (260)
T ss_pred             EEeCCCHHHHHHHHHHHHHHcCCCeEEEECC
Confidence            6667665555554443222335789888765

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.12  E-value=0.025  Score=50.17  Aligned_cols=86  Identities=12%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      +|++++++|.|++   |+|..+|+.|++.|.. +.+.+.+.                   +.   .+.+.++.+ -++..
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r~~-------------------~~---~~~~~~~~~-~~~~~   59 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQND-------------------RM---KKSLQKLVD-EEDLL   59 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecCch-------------------HH---HHHHHhhcc-CceeE
Confidence            3678899999985   9999999999999964 66654321                   11   112223322 24556


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +..++++.+.++.+++.....+.+.|++|.+..
T Consensus        60 ~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg   92 (252)
T PRK06079         60 VECDVASDESIERAFATIKERVGKIDGIVHAIA   92 (252)
T ss_pred             EeCCCCCHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence            667777666666554433223457888887653

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.031  Score=52.06  Aligned_cols=89  Identities=26%  Similarity=0.385  Sum_probs=60.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|++.|. ++.+++.+.                  .+.+.+.+.+++..  .++..+.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~------------------~~l~~~~~~~~~~g--~~~~~~~   62 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDE------------------EALQAVAEECRALG--AEVLVVP   62 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            466789999988 8999999999999997 477766432                  23444445555443  3555666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.++++.....+.+.|++|.+..
T Consensus        63 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG   93 (330)
T PRK06139         63 TDVTDADQVKALATQAASFGGRIDVWVNNVG   93 (330)
T ss_pred             eeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            6777766666555433223467899998763

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.10  E-value=0.032  Score=53.68  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+++|+|+|+|.+|..+++.+...|+ +++++|.|.
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~  235 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP  235 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            578899999999999999999999999 688888654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.04  Score=49.67  Aligned_cols=87  Identities=23%  Similarity=0.276  Sum_probs=57.9

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.| .|++|.++++.|++.|. ++.++|.+.                  ++.+.+.+.++..  ..++..+..
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~------------------~~l~~~~~~l~~~--~~~~~~~~~   62 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDK------------------PGLRQAVNHLRAE--GFDVHGVMC   62 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEeC
Confidence            5677888886 77999999999999997 477766432                  2333344445433  235666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+..+++.....+.+.|+||.+.
T Consensus        63 Dv~d~~~v~~~~~~~~~~~g~id~li~nA   91 (275)
T PRK05876         63 DVRHREEVTHLADEAFRLLGHVDVVFSNA   91 (275)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            77776766665543322345789888765

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.07  E-value=0.039  Score=48.71  Aligned_cols=88  Identities=20%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|..+++.|+..|. ++.+++.+.                  .+.+.+.+.+++..  .++..+..
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   63 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQ------------------DGANAVADEINKAG--GKAIGVAM   63 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCh------------------HHHHHHHHHHHhcC--ceEEEEEC
Confidence            56788999988 9999999999999997 577766432                  23444445555433  34555666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.+......+.+.|+||.+..
T Consensus        64 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag   93 (262)
T PRK13394         64 DVTNEDAVNAGIDKVAERFGSVDILVSNAG   93 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            777656665544322112346888887764

>PRK08589 short chain dehydrogenase; Validated

Probab=96.07  E-value=0.036  Score=49.75  Aligned_cols=87  Identities=16%  Similarity=0.236  Sum_probs=57.4

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++++|.|+ ||+|.++++.|+..|. ++.++|.+                   .+.+.+.+.+++..  .++..+.
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-------------------~~~~~~~~~~~~~~--~~~~~~~   60 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-------------------EAVSETVDKIKSNG--GKAKAYH   60 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-------------------HHHHHHHHHHHhcC--CeEEEEE
Confidence            467789999987 8999999999999996 56666532                   23444445554432  3456666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.....+.+.|++|.+.
T Consensus        61 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~A   90 (272)
T PRK08589         61 VDISDEQQVKDFASEIKEQFGRVDVLFNNA   90 (272)
T ss_pred             eecCCHHHHHHHHHHHHHHcCCcCEEEECC
Confidence            777766666555443332345788888775

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.06  E-value=0.012  Score=43.78  Aligned_cols=38  Identities=37%  Similarity=0.531  Sum_probs=34.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+..++++|+|+|..|..++..|...|..++.+.|.|.
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi   57 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI   57 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            36789999999999999999999999888999998844

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.06  E-value=0.13  Score=42.99  Aligned_cols=88  Identities=25%  Similarity=0.291  Sum_probs=59.3

Q ss_pred             EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302          20 VIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL   98 (292)
Q Consensus        20 V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~   98 (292)
                      |+|+|+ |.+|..+++.|.+.| -+++.+=.+.                  .|.+       + .+.  ++....++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~------------------~~~~-------~-~~~--~~~~~~d~~d~   51 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSP------------------SKAE-------D-SPG--VEIIQGDLFDP   51 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG------------------GGHH-------H-CTT--EEEEESCTTCH
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEecCc------------------hhcc-------c-ccc--cccceeeehhh
Confidence            789997 999999999999999 5566532211                  1221       1 344  45556666666


Q ss_pred             hhHHHHHhcCCCCCCCcceEEeccCC----HHHHHHHHHHHHHhCCcee
Q psy2302          99 RKVGALAVQGSLTEGPVDLVLSCVDN----FEARMTINMACNQLGQTWF  143 (292)
Q Consensus        99 ~~~~~~i~~~~~~~~~~DlVv~a~d~----~~~r~~in~~~~~~~~p~i  143 (292)
                      +.+.+.+       .++|.||.+...    ...-..+-+++.+.+++.+
T Consensus        52 ~~~~~al-------~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~   93 (183)
T PF13460_consen   52 DSVKAAL-------KGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRV   93 (183)
T ss_dssp             HHHHHHH-------TTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred             hhhhhhh-------hhcchhhhhhhhhcccccccccccccccccccccc
Confidence            6666665       689999999863    2333456677878787643

...

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.056  Score=48.68  Aligned_cols=84  Identities=30%  Similarity=0.494  Sum_probs=56.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++.++|.|+||+|.++++.|+ .| .++.++|.+.                  .+.+.+.+.++..  ..++..+..+++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r~~------------------~~~~~~~~~l~~~--~~~~~~~~~Dv~   59 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADYNE------------------ENLEAAAKTLREA--GFDVSTQEVDVS   59 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEEeecC
Confidence            467889999999999999996 67 4688877432                  1333444455433  345667777787


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+...++.. ..+.+.|++|.+..
T Consensus        60 d~~~i~~~~~~~-~~~g~id~li~nAG   85 (275)
T PRK06940         60 SRESVKALAATA-QTLGPVTGLVHTAG   85 (275)
T ss_pred             CHHHHHHHHHHH-HhcCCCCEEEECCC
Confidence            767776665432 12467899998764

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.041  Score=48.65  Aligned_cols=90  Identities=14%  Similarity=0.233  Sum_probs=57.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|..+++.|+..|..++.++|.+.-                  +.....+.+.+.  ..++..+.
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~------------------~~~~~~~~l~~~--~~~~~~~~   62 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAE------------------KGEAQAAELEAL--GAKAVFVQ   62 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHH------------------HHHHHHHHHHhc--CCeEEEEE
Confidence            367889999986 799999999999999887888775421                  112223334332  33555566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.....+.+.|+||.+..
T Consensus        63 ~D~~~~~~~~~~~~~~~~~~g~id~li~~ag   93 (260)
T PRK06198         63 ADLSDVEDCRRVVAAADEAFGRLDALVNAAG   93 (260)
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            6666655555554332222356899988864

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.03  E-value=0.033  Score=50.36  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=30.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .++++|+|+|+|++|..++..|+..|. +++++|.
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R  148 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANR  148 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            347789999999999999999999996 8888764

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.02  E-value=0.037  Score=49.23  Aligned_cols=90  Identities=13%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ +|+|.++++.|+..|.. +++++..                 ...+.+...+.+.... ..++..+.
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~-----------------~~~~~~~~~~~~~~~~-~~~~~~~~   65 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTYNS-----------------NVEEANKIAEDLEQKY-GIKAKAYP   65 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCC-----------------CHHHHHHHHHHHHHhc-CCceEEEE
Confidence            567889999976 79999999999999975 5554311                 0123444444444322 34667777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        66 ~D~~~~~~~~~~~~~~~~~~g~id~lv~nA   95 (260)
T PRK08416         66 LNILEPETYKELFKKIDEDFDRVDFFISNA   95 (260)
T ss_pred             cCCCCHHHHHHHHHHHHHhcCCccEEEECc
Confidence            788776777665544333346789988765

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.01  E-value=0.039  Score=50.24  Aligned_cols=31  Identities=19%  Similarity=0.493  Sum_probs=28.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ||+|+|+|.+|+.++..|++.| .+++++|.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence            7999999999999999999998 478998864

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.01  E-value=0.061  Score=48.64  Aligned_cols=88  Identities=25%  Similarity=0.391  Sum_probs=67.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++.++++|-|+ +|+|-++|+.|++-|. ++.|+-.+.                  .|-+.+++.|.+.. .++++.+..
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~------------------~kL~~la~~l~~~~-~v~v~vi~~   63 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARRE------------------DKLEALAKELEDKT-GVEVEVIPA   63 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH------------------HHHHHHHHHHHHhh-CceEEEEEC
Confidence            45778999987 7999999999999995 466755332                  47788889998887 899999999


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+++..+..+........|++|++.
T Consensus        64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNA   92 (265)
T COG0300          64 DLSDPEALERLEDELKERGGPIDVLVNNA   92 (265)
T ss_pred             cCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence            99887777655433232334789999876

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.048  Score=48.29  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=56.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+ |++|..+++.|+..|. +++++|.+.                  .+.+.+.+.++....  ++..+..+++
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~Dl~   60 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNE------------------TRLASLAQELADHGG--EALVVPTDVS   60 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--cEEEEEccCC
Confidence            57899988 8999999999999996 788776432                  234444455555433  4556666776


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+...+++....+.+.|+||.+..
T Consensus        61 ~~~~~~~~~~~~~~~~~~id~vi~~ag   87 (263)
T PRK06181         61 DAEACERLIEAAVARFGGIDILVNNAG   87 (263)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666666555432222357899998863

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.99  E-value=0.043  Score=51.12  Aligned_cols=94  Identities=14%  Similarity=0.122  Sum_probs=62.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLT-RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..++|+|+|+|+.|...+..|. ..++.++.++|.+.                  .|++.+++++++.. .+++..+   
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~------------------~~a~~~~~~~~~~~-~~~~~~~---  183 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTF------------------EKAYAFAQEIQSKF-NTEIYVV---  183 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCH------------------HHHHHHHHHHHHhc-CCcEEEe---
Confidence            4678999999999999888775 45899999987542                  36777777776543 2343332   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                          +++++.+       .++|+|+.||.+..  ..+. .+.+.|.-++..
T Consensus       184 ----~~~~~~~-------~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~i  220 (325)
T PRK08618        184 ----NSADEAI-------EEADIIVTVTNAKT--PVFS-EKLKKGVHINAV  220 (325)
T ss_pred             ----CCHHHHH-------hcCCEEEEccCCCC--cchH-HhcCCCcEEEec
Confidence                2344444       68999999998753  2334 444555544433

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.036  Score=49.34  Aligned_cols=86  Identities=17%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++++|.|+ |++|..+++.|++.|. +++++|.+.-                  +.+.+.+   ++.  .++..+.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~------------------~~~~~~~---~~~--~~~~~~~   58 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDAD------------------NGAAVAA---SLG--ERARFIA   58 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHH---HhC--CeeEEEE
Confidence            366789999986 8999999999999997 7888765321                  1222222   222  2455666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.+......+...|++|.+..
T Consensus        59 ~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ag   89 (261)
T PRK08265         59 TDITDDAAIERAVATVVARFGRVDILVNLAC   89 (261)
T ss_pred             ecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            6777666666555432223457888887653

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.97  E-value=0.039  Score=50.86  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=29.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..||+|+|+|++|+.++..|+++|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            3589999999999999999999995 68888864

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=95.93  E-value=0.032  Score=49.39  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|+.+||+|.|.|.+|..+++.|.+.|+.-+.+.|.+
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~   64 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD   64 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5789999999999999999999999998777788763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.081  Score=46.85  Aligned_cols=86  Identities=24%  Similarity=0.434  Sum_probs=59.5

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                  .+.+.+.+.+.+.. ..++..+.
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~-~~~~~~~~   63 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDA------------------DALEALAADLRAAH-GVDVAVHA   63 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhhc-CCceEEEE
Confidence            467889999988 7999999999999998 788877532                  23344445554433 34566666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.    +...|++|.+..
T Consensus        64 ~D~~~~~~~~~~~~~----~g~id~lv~~ag   90 (259)
T PRK06125         64 LDLSSPEAREQLAAE----AGDIDILVNNAG   90 (259)
T ss_pred             ecCCCHHHHHHHHHH----hCCCCEEEECCC
Confidence            777766666665542    257899888753

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.91  E-value=0.053  Score=50.51  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=55.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLT-RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++++|+|+|+.|...+..|. ..++.++++++.+.                  .|++.+++++++..+ +++...    
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~------------------~~a~~~a~~~~~~~g-~~v~~~----  185 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDS------------------AKAEALALQLSSLLG-IDVTAA----  185 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCH------------------HHHHHHHHHHHhhcC-ceEEEe----
Confidence            468999999999999999997 47889999976432                  478888888765432 444332    


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                         +++++.+       .++|+|+.||...
T Consensus       186 ---~~~~~av-------~~aDiVvtaT~s~  205 (326)
T TIGR02992       186 ---TDPRAAM-------SGADIIVTTTPSE  205 (326)
T ss_pred             ---CCHHHHh-------ccCCEEEEecCCC
Confidence               3344444       6899999999763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.89  E-value=0.068  Score=49.47  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=52.2

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhC-CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCG-IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~G-vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +++++|+|.|+ |++|+.+++.|+..| ..+++++|.+..                  +...+.+.+    +.-+++.+.
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~------------------~~~~~~~~~----~~~~~~~v~   59 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL------------------KQWEMQQKF----PAPCLRFFI   59 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh------------------HHHHHHHHh----CCCcEEEEE
Confidence            45788999986 899999999999987 457888774421                  111111211    122455666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+.+.+       .++|+||.+.
T Consensus        60 ~Dl~d~~~l~~~~-------~~iD~Vih~A   82 (324)
T TIGR03589        60 GDVRDKERLTRAL-------RGVDYVVHAA   82 (324)
T ss_pred             ccCCCHHHHHHHH-------hcCCEEEECc
Confidence            7777766666655       5689998765

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.89  E-value=0.064  Score=50.44  Aligned_cols=99  Identities=20%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ...+|+|+|+|.+|--.+..+...|..+++++|.+.-                  |.+.+++.    . ...+......-
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~------------------Rl~~A~~~----~-g~~~~~~~~~~  224 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE------------------RLELAKEA----G-GADVVVNPSED  224 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH------------------HHHHHHHh----C-CCeEeecCccc
Confidence            3348999999999999999999999999999986541                  33333332    1 11111111110


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                      .......++- .    -.++|+||+|+.+..+.....++++..|.-.
T Consensus       225 ~~~~~~~~~t-~----g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~  266 (350)
T COG1063         225 DAGAEILELT-G----GRGADVVIEAVGSPPALDQALEALRPGGTVV  266 (350)
T ss_pred             cHHHHHHHHh-C----CCCCCEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            0001111111 0    1369999999998877777777776666543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.89  E-value=0.08  Score=48.24  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|+|+|..|+.+|..|++.|. +++++|.+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999996 699998653

>PLN02253 xanthoxin dehydrogenase

Probab=95.88  E-value=0.045  Score=49.08  Aligned_cols=88  Identities=14%  Similarity=0.213  Sum_probs=56.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++++|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+   ....++..+.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~------------------~~~~~~~~~~---~~~~~~~~~~   72 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQD------------------DLGQNVCDSL---GGEPNVCFFH   72 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHh---cCCCceEEEE
Confidence            466788999975 7899999999999996 577776421                  1222222322   2234566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.+......+.+.|+||.+..
T Consensus        73 ~Dl~d~~~~~~~~~~~~~~~g~id~li~~Ag  103 (280)
T PLN02253         73 CDVTVEDDVSRAVDFTVDKFGTLDIMVNNAG  103 (280)
T ss_pred             eecCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            7777766666555432223357899887764

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=95.88  E-value=0.03  Score=51.27  Aligned_cols=99  Identities=25%  Similarity=0.258  Sum_probs=58.6

Q ss_pred             EEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC--Ce--EEEEecc
Q psy2302          20 VIVV-GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD--VT--IEVHNFN   94 (292)
Q Consensus        20 V~vv-G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~--v~--v~~~~~~   94 (292)
                      |+|. |+|++|++++++|++.+..+|.++|.|.-.                  --.+.+.+++..++  ++  +...-.+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~------------------l~~l~~~l~~~~~~~~v~~~~~~vigD   62 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENK------------------LYELERELRSRFPDPKVRFEIVPVIGD   62 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHH------------------HHHHHHHCHHHC--TTCEEEEE--CTS
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhH------------------HHHHHHHHhhcccccCcccccCceeec
Confidence            5666 567899999999999999999999987643                  34445556555444  43  2344567


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC---------CHHH--------HHHHHHHHHHhCCc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD---------NFEA--------RMTINMACNQLGQT  141 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d---------~~~~--------r~~in~~~~~~~~p  141 (292)
                      +.+.+.+...++.     .++|+|+-+..         ++..        ..-+-++|.++++.
T Consensus        63 vrd~~~l~~~~~~-----~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~  121 (293)
T PF02719_consen   63 VRDKERLNRIFEE-----YKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVE  121 (293)
T ss_dssp             CCHHHHHHHHTT-------T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-S
T ss_pred             ccCHHHHHHHHhh-----cCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            7665666665532     48999998873         3221        13455778888773

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.88  E-value=0.036  Score=51.00  Aligned_cols=33  Identities=27%  Similarity=0.577  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            479999999999999999999996 688888643

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.051  Score=50.62  Aligned_cols=89  Identities=22%  Similarity=0.275  Sum_probs=59.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|.++++.|++.|. ++.+++.+.                  .+.+.+.+.+++..  .++..+.
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~------------------~~l~~~~~~l~~~g--~~~~~v~   63 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGE------------------EGLEALAAEIRAAG--GEALAVV   63 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHcC--CcEEEEE
Confidence            356788999986 8999999999999996 577766421                  24444555555443  4566667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus        64 ~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg   94 (334)
T PRK07109         64 ADVADAEAVQAAADRAEEELGPIDTWVNNAM   94 (334)
T ss_pred             ecCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            7777766666554432223467899988764

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.87  E-value=0.049  Score=53.34  Aligned_cols=124  Identities=14%  Similarity=0.107  Sum_probs=68.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEeccccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~~~i~~   97 (292)
                      .|.|||+|..|..+|.+|++.|. ++++.|.+.-....+... +.. .-+..-+...++....+ .|++-+......   
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~-~~~-g~~~~~~~s~~e~v~~l~~~dvIil~v~~~---   74 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAE-HAK-GKKIVGAYSIEEFVQSLERPRKIMLMVKAG---   74 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhh-ccC-CCCceecCCHHHHHhhcCCCCEEEEECCCc---
Confidence            47899999999999999999997 688887654322221110 000 00000111122333222 345444433221   


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                       +.+++.+......+..-|+|||++. .+.......+.+.+.++.|+++++++
T Consensus        75 -~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsG  126 (467)
T TIGR00873        75 -APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSG  126 (467)
T ss_pred             -HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence             2222222211112345689999985 44444444567888899999999987

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.056  Score=47.61  Aligned_cols=88  Identities=22%  Similarity=0.233  Sum_probs=57.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|.++++.|++.|. ++.+++.+.                  .+.+.+.+.+++..  .++..+..
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   63 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDA------------------AGGEETVALIREAG--GEALFVAC   63 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CceEEEEc
Confidence            56789999986 7999999999999996 577766432                  12333344454443  34666677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        64 D~~~~~~i~~~~~~~~~~~g~id~li~~ag   93 (253)
T PRK06172         64 DVTRDAEVKALVEQTIAAYGRLDYAFNNAG   93 (253)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            777656665544332222356798887754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.87  E-value=0.067  Score=49.23  Aligned_cols=33  Identities=30%  Similarity=0.531  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      .+|.|||+|.+|..++..|.+.|. .+++++|.+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            589999999999999999999997 478888864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.85  E-value=0.042  Score=53.72  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=32.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .++.++|+|+|.|++|-++|..|...|. +++++|..
T Consensus        13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~   48 (480)
T PRK01438         13 DWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG   48 (480)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899999999999999999999997 59998854

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.85  E-value=0.06  Score=54.37  Aligned_cols=90  Identities=21%  Similarity=0.279  Sum_probs=63.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +.+|+|+|.|.+|..+++.|...|+ +++++|.|.-                  +++.    +++.  +  ...+..+.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~------------------~v~~----~~~~--g--~~v~~GDat  452 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS------------------AVNL----MRKY--G--YKVYYGDAT  452 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH------------------HHHH----HHhC--C--CeEEEeeCC
Confidence            4699999999999999999999998 5899998761                  2222    2222  2  234455555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG  139 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~  139 (292)
                      +.+-+++.      -.+++|.||.++|+.+.-..+-..+++++
T Consensus       453 ~~~~L~~a------gi~~A~~vv~~~~d~~~n~~i~~~~r~~~  489 (601)
T PRK03659        453 QLELLRAA------GAEKAEAIVITCNEPEDTMKIVELCQQHF  489 (601)
T ss_pred             CHHHHHhc------CCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence            53433321      23689999999999888777777777754

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.84  E-value=0.039  Score=50.81  Aligned_cols=32  Identities=31%  Similarity=0.523  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            79999999999999999999986 478888653

>PRK06196 oxidoreductase; Provisional

Probab=95.84  E-value=0.047  Score=50.14  Aligned_cols=85  Identities=21%  Similarity=0.267  Sum_probs=54.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|.++++.|++.|. ++.+++.+.                  .|.+.+.+.+.+      +..+.
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~------------------~~~~~~~~~l~~------v~~~~   77 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRP------------------DVAREALAGIDG------VEVVM   77 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHhhh------CeEEE
Confidence            457788999987 8999999999999996 577766431                  233333333321      44556


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|+||.+..
T Consensus        78 ~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg  108 (315)
T PRK06196         78 LDLADLESVRAFAERFLDSGRRIDILINNAG  108 (315)
T ss_pred             ccCCCHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence            6676666665554432223357888887653

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.83  E-value=0.043  Score=49.37  Aligned_cols=87  Identities=14%  Similarity=0.164  Sum_probs=55.1

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .||+|+|+ |.+|..++..+... ++.-..++|.+.-   ...+  +                     ....+..     
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~--~---------------------~~~~i~~-----   50 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG--Q---------------------GALGVAI-----   50 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc--c---------------------CCCCccc-----
Confidence            48999999 99999999988864 4555555665431   0100  0                     0011111     


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                        ..++++++       .++|+||+++ ++..-..+...|.++|+|++.+
T Consensus        51 --~~dl~~ll-------~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig   90 (257)
T PRK00048         51 --TDDLEAVL-------ADADVLIDFT-TPEATLENLEFALEHGKPLVIG   90 (257)
T ss_pred             --cCCHHHhc-------cCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE
Confidence              13455544       4689999988 4444466778899999998744

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.056  Score=47.38  Aligned_cols=88  Identities=20%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                  .+...+.+.+++..  .++..+..
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   62 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINA------------------EGAERVAKQIVADG--GTAIAVQV   62 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence            56789999987 9999999999999995 577766432                  12222333343322  23445566


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...+......+...|+||.+..
T Consensus        63 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   92 (250)
T PRK07774         63 DVSDPDSAKAMADATVSAFGGIDYLVNNAA   92 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            666655554443322112246899987664

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.021  Score=50.58  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +|++++|+|+|+ |++|..+++.|++.|. ++.++|.
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r   39 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDI   39 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            467899999998 9999999999999995 5777664

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.81  E-value=0.059  Score=47.71  Aligned_cols=89  Identities=15%  Similarity=0.207  Sum_probs=56.7

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      -+|++++|+|.|+ |++|..+++.|+..|.. +.+++.+.                   +.+.+.+.+.+..  -++..+
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~-------------------~~~~~~~~~~~~~--~~~~~~   68 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHGT-------------------NWDETRRLIEKEG--RKVTFV   68 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCc-------------------HHHHHHHHHHhcC--CceEEE
Confidence            3578899999976 79999999999999975 55655431                   2233344444433  245566


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...+++....+.+.|++|.+..
T Consensus        69 ~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag  100 (258)
T PRK06935         69 QVDLTKPESAEKVVKEALEEFGKIDILVNNAG  100 (258)
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66777666665554432222356788887653

>KOG0024|consensus

Probab=95.80  E-value=0.16  Score=46.99  Aligned_cols=100  Identities=16%  Similarity=0.214  Sum_probs=63.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ..++|+|.|+|++|-.....+-.+|..++.++|-..                  +|.+.+++ +     ..+.......-
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~------------------~Rle~Ak~-~-----Ga~~~~~~~~~  224 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA------------------NRLELAKK-F-----GATVTDPSSHK  224 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH------------------HHHHHHHH-h-----CCeEEeecccc
Confidence            478999999999999999999999999999988543                  35555554 2     22222222111


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQ  140 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~  140 (292)
                      .+.+.+.+.+++.--. ..+|++|+|+.-..+-..--.+.+..|+
T Consensus       225 ~~~~~~~~~v~~~~g~-~~~d~~~dCsG~~~~~~aai~a~r~gGt  268 (354)
T KOG0024|consen  225 SSPQELAELVEKALGK-KQPDVTFDCSGAEVTIRAAIKATRSGGT  268 (354)
T ss_pred             ccHHHHHHHHHhhccc-cCCCeEEEccCchHHHHHHHHHhccCCE
Confidence            1234555555432211 2499999999876654444445555555

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.80  E-value=0.058  Score=48.74  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=26.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhC--CCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCG--IGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~G--vg~i~lvD~D   50 (292)
                      .||.|||+|.+|..++..|.+.+  +.-..++|.+
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~   36 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN   36 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence            37999999999999999998864  4445566654

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.80  E-value=0.055  Score=47.03  Aligned_cols=87  Identities=17%  Similarity=0.176  Sum_probs=54.7

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +.+++|+|+|+ |++|..+++.|+..|.. +.+++.+.                  .+...+.+.+.+.   .+++.+..
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~~------------------~~~~~~~~~l~~~---~~~~~~~~   61 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITARDQ------------------KELEEAAAELNNK---GNVLGLAA   61 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCCH------------------HHHHHHHHHHhcc---CcEEEEEc
Confidence            34678999986 89999999999998874 77765321                  1233333333322   34556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.+++....+.++|+||.+..
T Consensus        62 D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag   91 (237)
T PRK07326         62 DVRDEADVQRAVDAIVAAFGGLDVLIANAG   91 (237)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            676666666555432222357899997754

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.041  Score=48.60  Aligned_cols=88  Identities=18%  Similarity=0.288  Sum_probs=55.5

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..+++++|+|.|+ |++|..+++.|+..|.. +++++.+.                  .+.+.+.+.+    +..++..+
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~~------------------~~~~~~~~~~----~~~~~~~~   63 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVSE------------------AALAATAARL----PGAKVTAT   63 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHH----hcCceEEE
Confidence            4578899999976 89999999999999974 78877432                  1111222222    22355666


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.++|+||.+..
T Consensus        64 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag   95 (264)
T PRK12829         64 VADVADPAQVERVFDTAVERFGGLDVLVNNAG   95 (264)
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            66666656555444322222357899987664

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.79  E-value=0.062  Score=47.48  Aligned_cols=82  Identities=10%  Similarity=0.155  Sum_probs=50.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +..||.|||+|.+|..++..|.+.|.   .++.+++...                 ..|.+.+++    .. .+.+  . 
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~-----------------~~~~~~~~~----~~-~~~~--~-   57 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSN-----------------VEKLDQLQA----RY-NVST--T-   57 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCC-----------------HHHHHHHHH----Hc-CcEE--e-
Confidence            45789999999999999999998873   2344433210                 123322222    11 1221  1 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC  135 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~  135 (292)
                            .+..+.+       .++|+|+.|+.+...+..+.++.
T Consensus        58 ------~~~~~~~-------~~~DiViiavp~~~~~~v~~~l~   87 (245)
T PRK07634         58 ------TDWKQHV-------TSVDTIVLAMPPSAHEELLAELS   87 (245)
T ss_pred             ------CChHHHH-------hcCCEEEEecCHHHHHHHHHHHH
Confidence                  1233333       57999999999887776666654

>PRK08303 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.071  Score=49.04  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=61.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccccc-CCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELA-NMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~s-Nl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .|++++++|.|+ +|+|.++++.|++.|. ++.+++.+.-... +..|         ..+.+.+++.+...  ..++..+
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~---------~~~~~~~~~~l~~~--~~~~~~~   72 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDR---------PETIEETAELVTAA--GGRGIAV   72 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccc---------cchHHHHHHHHHhc--CCceEEE
Confidence            367789999988 5899999999999996 6777775421100 0000         12445555556543  2345566


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++++.+.+..+++.....+.+.|++|.+.
T Consensus        73 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA  103 (305)
T PRK08303         73 QVDHLVPEQVRALVERIDREQGRLDILVNDI  103 (305)
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence            7777776777666554333446789888765

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.79  E-value=0.07  Score=47.05  Aligned_cols=89  Identities=21%  Similarity=0.352  Sum_probs=57.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|.+++++|.|+ |++|..+++.|++.|. ++.++|.+.                  .+.+.+.+.+....  .++..+.
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~   64 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITA------------------ERAELAVAKLRQEG--IKAHAAP   64 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCH------------------HHHHHHHHHHHhcC--CeEEEEe
Confidence            356788999975 7899999999999996 566655321                  24444444454332  3455666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.+......+.+.|+||.+..
T Consensus        65 ~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   95 (254)
T PRK08085         65 FNVTHKQEVEAAIEHIEKDIGPIDVLINNAG   95 (254)
T ss_pred             cCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            6777666666555432223457899988764

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.78  E-value=0.011  Score=47.62  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=45.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ..||.|||+|-+|..++..|.+.|.. +.-+              |.       +....++++...-+...+.       
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v--------------~s-------rs~~sa~~a~~~~~~~~~~-------   60 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHE-VVGV--------------YS-------RSPASAERAAAFIGAGAIL-------   60 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSE-EEEE--------------SS-------CHH-HHHHHHC--TT-----------
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCe-EEEE--------------Ee-------CCccccccccccccccccc-------
Confidence            44899999999999999999999853 3322              11       1223445555555544332       


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHH
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACN  136 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~  136 (292)
                         ++.+.+       .++|+|+.|+.+........+++.
T Consensus        61 ---~~~~~~-------~~aDlv~iavpDdaI~~va~~La~   90 (127)
T PF10727_consen   61 ---DLEEIL-------RDADLVFIAVPDDAIAEVAEQLAQ   90 (127)
T ss_dssp             ----TTGGG-------CC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred             ---cccccc-------ccCCEEEEEechHHHHHHHHHHHH
Confidence               111222       689999999987766655555543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.78  E-value=0.073  Score=48.80  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=60.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++++|.|+ |++|..+++.|++.|. ++.+.|...                 ..+.+.+.+.++..  ..++..+.
T Consensus         9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~-----------------~~~~~~~~~~i~~~--g~~~~~~~   68 (306)
T PRK07792          9 DLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS-----------------ALDASDVLDEIRAA--GAKAVAVA   68 (306)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc-----------------hhHHHHHHHHHHhc--CCeEEEEe
Confidence            577889999976 6899999999999997 566665421                 12344455555543  34566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.... +.+.|+||.+.
T Consensus        69 ~Dv~d~~~~~~~~~~~~~-~g~iD~li~nA   97 (306)
T PRK07792         69 GDISQRATADELVATAVG-LGGLDIVVNNA   97 (306)
T ss_pred             CCCCCHHHHHHHHHHHHH-hCCCCEEEECC
Confidence            778776666665544333 46789998765

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=95.78  E-value=0.04  Score=52.58  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=51.3

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCC------eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCC-eE
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIG------KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDV-TI   88 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg------~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v-~v   88 (292)
                      .||.|+|+ |.+|+.+|..|+..|+-      .|.|+|.|.                -+.|++.-+--|..-. |.. ++
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~----------------~~~~a~g~a~DL~d~a~~~~~~v  108 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER----------------SKEALEGVAMELEDSLYPLLREV  108 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc----------------cchhhhHHHHHHHHhhhhhcCce
Confidence            48999999 99999999999999974      477776544                3345555555555543 332 12


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      .     ++. .++.++        .+.|+||.+...
T Consensus       109 ~-----i~~-~~y~~~--------kdaDIVVitAG~  130 (387)
T TIGR01757       109 S-----IGI-DPYEVF--------EDADWALLIGAK  130 (387)
T ss_pred             E-----Eec-CCHHHh--------CCCCEEEECCCC
Confidence            1     111 334433        799999998754

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.76  E-value=0.053  Score=39.39  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=41.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ||+|+|.|.+|.++|..|++.|. +++|++...        .+.  ......=...+.+++++.  .+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~--------~~~--~~~~~~~~~~~~~~l~~~--gV~v~   58 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSD--------RLL--PGFDPDAAKILEEYLRKR--GVEVH   58 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSS--------SSS--TTSSHHHHHHHHHHHHHT--TEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccc--------hhh--hhcCHHHHHHHHHHHHHC--CCEEE
Confidence            68999999999999999999994 788888543        112  333344456666777766  34443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.76  E-value=0.052  Score=48.74  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=26.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI--GKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv--g~i~lvD~   49 (292)
                      .+|.|||+|.+|+.++..|.+.|.  .++.++|.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r   36 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP   36 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence            479999999999999999999884  35666664

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.75  E-value=0.036  Score=43.19  Aligned_cols=86  Identities=20%  Similarity=0.234  Sum_probs=54.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhC--CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCG--IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~G--vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ||.|||+|..|...+..+.+..  +.-..++|.+.                  .+++.+++    .+ .+.  .+     
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~------------------~~~~~~~~----~~-~~~--~~-----   51 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP------------------ERAEAFAE----KY-GIP--VY-----   51 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH------------------HHHHHHHH----HT-TSE--EE-----
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH------------------HHHHHHHH----Hh-ccc--ch-----
Confidence            7999999999999999999873  33334556543                  23333322    22 233  22     


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                        .+++++++.     .++|+|+.++.+. ....+-..+.+.|+++
T Consensus        52 --~~~~~ll~~-----~~~D~V~I~tp~~-~h~~~~~~~l~~g~~v   89 (120)
T PF01408_consen   52 --TDLEELLAD-----EDVDAVIIATPPS-SHAEIAKKALEAGKHV   89 (120)
T ss_dssp             --SSHHHHHHH-----TTESEEEEESSGG-GHHHHHHHHHHTTSEE
T ss_pred             --hHHHHHHHh-----hcCCEEEEecCCc-chHHHHHHHHHcCCEE
Confidence              234555532     4799999999884 3556666777777754

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.069  Score=47.01  Aligned_cols=88  Identities=18%  Similarity=0.226  Sum_probs=57.1

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |.+++|+|.|+ |++|..+++.|+.-|. ++.++|.+.                  .+.+.+.+.+...  ..++..+..
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~   61 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTA------------------ERLDEVAAEIDDL--GRRALAVPT   61 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHHh--CCceEEEec
Confidence            45788999986 7999999999999997 677876421                  1333334444432  234566677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        62 D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag   91 (258)
T PRK07890         62 DITDEDQCANLVALALERFGRVDALVNNAF   91 (258)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCccEEEECCc
Confidence            777666665554432222357898887663

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.74  E-value=0.049  Score=50.18  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..||.|+|+|.+|+.+|..|+..|. +++++|.+
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~   36 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR   36 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4589999999999999999999995 68888865

>PLN02427 UDP-apiose/xylose synthase

Probab=95.73  E-value=0.092  Score=49.67  Aligned_cols=108  Identities=18%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +++.+||+|.|+ |-+|+.+++.|...|--++..+|...   +.+. ++..   .+.          ....+  .++.+.
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~---~~~~-~l~~---~~~----------~~~~~--~~~~~~   71 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN---DKIK-HLLE---PDT----------VPWSG--RIQFHR   71 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc---hhhh-hhhc---ccc----------ccCCC--CeEEEE
Confidence            677889999985 99999999999998533677777421   0000 0000   000          00011  355556


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCC---------HHH--------HHHHHHHHHHhCCceeecCc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDN---------FEA--------RMTINMACNQLGQTWFESGV  147 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~---------~~~--------r~~in~~~~~~~~p~i~~~~  147 (292)
                      .++.+.+.+.+.+       .++|+||.+...         +..        ...+-++|.+.+..+|+.+.
T Consensus        72 ~Dl~d~~~l~~~~-------~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS  136 (386)
T PLN02427         72 INIKHDSRLEGLI-------KMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFST  136 (386)
T ss_pred             cCCCChHHHHHHh-------hcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence            6666655665555       568999876631         100        12234566777777776654

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.72  E-value=0.022  Score=52.88  Aligned_cols=90  Identities=19%  Similarity=0.308  Sum_probs=54.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .+|.|+|.|+.|+++|..|++.| ..+++...|.-....++..                ++-.+.-|++.+.   ..+..
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~----------------~~N~~yLp~i~lp---~~l~a   61 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINET----------------RENPKYLPGILLP---PNLKA   61 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhc----------------CcCccccCCccCC---ccccc
Confidence            58999999999999999999999 5555555443222111110                0001112232221   11111


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHH
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMA  134 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~  134 (292)
                      ..++.+.+       +++|+||.++.+...|..+.++
T Consensus        62 t~Dl~~a~-------~~ad~iv~avPs~~~r~v~~~l   91 (329)
T COG0240          62 TTDLAEAL-------DGADIIVIAVPSQALREVLRQL   91 (329)
T ss_pred             ccCHHHHH-------hcCCEEEEECChHHHHHHHHHH
Confidence            24555554       5799999999998888877775

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.71  E-value=0.076  Score=46.81  Aligned_cols=89  Identities=21%  Similarity=0.291  Sum_probs=58.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.|+ |++|..+++.|+..|. ++.++|.+.                  .+.+.+.+.+++...  ++..+.
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~   66 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNA------------------ATLEAAVAALRAAGG--AAEALA   66 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCH------------------HHHHHHHHHHHhcCC--ceEEEE
Confidence            467889999976 7899999999999997 688877643                  133344455554332  455666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|.||.+..
T Consensus        67 ~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   97 (256)
T PRK06124         67 FDIADEEAVAAAFARIDAEHGRLDILVNNVG   97 (256)
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            6676656665544432222356788887654

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.079  Score=46.61  Aligned_cols=89  Identities=17%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.| .|++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..+  ++..+.
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~   63 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKL------------------DGCQAVADAIVAAGG--KAEALA   63 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--eEEEEE
Confidence            46678899997 67999999999999997 788877532                  133344455544332  344455


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        64 ~D~~~~~~~~~~~~~~~~~~~~id~li~~ag   94 (252)
T PRK07035         64 CHIGEMEQIDALFAHIRERHGRLDILVNNAA   94 (252)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5666555555444332223356888886653

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.68  E-value=0.079  Score=46.52  Aligned_cols=88  Identities=22%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.| .|++|..+++.|+..|. ++.++|...                  .+.+.+.+.+.+.  ..+++.+..
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~   60 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLND------------------EAAAAAAEALQKA--GGKAIGVAM   60 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHHHhc--CCcEEEEEc
Confidence            4568999998 59999999999999986 566655321                  1333334444432  345666667


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|+||.+..
T Consensus        61 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a~   90 (258)
T PRK12429         61 DVTDEEAINAGIDYAVETFGGVDILVNNAG   90 (258)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777666665544332222357899987763

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.68  E-value=0.076  Score=46.53  Aligned_cols=88  Identities=18%  Similarity=0.212  Sum_probs=54.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|..+++.|+..|. ++.+++.+.                 ..+.+.+.+.++..  ..++..+..
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~-----------------~~~~~~~~~~l~~~--~~~~~~~~~   63 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQK-----------------APRANKVVAEIEAA--GGRASAVGA   63 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc-----------------hHhHHHHHHHHHhc--CCceEEEEc
Confidence            56789999996 8999999999999986 455544211                 01233344445443  234556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+...++.....+.+.|+||.+.
T Consensus        64 D~~~~~~~~~~~~~~~~~~~~~d~vi~~a   92 (248)
T PRK07806         64 DLTDEESVAALMDTAREEFGGLDALVLNA   92 (248)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEECC
Confidence            77766666555433222234678877665

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.68  E-value=0.041  Score=51.59  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=26.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..||+|+|+|.+|+.++..|++.|  +.+++..+
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~   38 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRS   38 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCC
Confidence            358999999999999999999998  45665543

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.66  E-value=0.074  Score=48.95  Aligned_cols=88  Identities=24%  Similarity=0.250  Sum_probs=55.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +.+++|+|.|+ |++|.++++.|++.| .++.+++.+.                  .|.+.+.+.+..  +..++..+..
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~------------------~~~~~~~~~l~~--~~~~~~~~~~   62 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNL------------------KKAEAAAQELGI--PPDSYTIIHI   62 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEECCH------------------HHHHHHHHHhhc--cCCceEEEEe
Confidence            35678899975 899999999999999 4677776432                  244444444432  2334556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.......+.|+||.+..
T Consensus        63 Dl~~~~~v~~~~~~~~~~~~~iD~li~nAg   92 (322)
T PRK07453         63 DLGDLDSVRRFVDDFRALGKPLDALVCNAA   92 (322)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCccEEEECCc
Confidence            777666665554332222346888887653

>PRK07680 late competence protein ComER; Validated

Probab=95.63  E-value=0.086  Score=47.64  Aligned_cols=32  Identities=19%  Similarity=0.447  Sum_probs=27.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D   50 (292)
                      +|.|||+|.+|+.++..|.+.|.   .+++++|.+
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~   36 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT   36 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            69999999999999999999984   467776653

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.068  Score=46.62  Aligned_cols=89  Identities=13%  Similarity=0.159  Sum_probs=56.6

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|..+++.|++.|.. +.++..+.                 .++.+.+.+.+.+..  .++..+..
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~   62 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGS-----------------AAAADELVAEIEAAG--GRAIAVQA   62 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCC-----------------HHHHHHHHHHHHhcC--CeEEEEEC
Confidence            46788999985 99999999999999974 44433211                 113334445555443  35566667


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|+||.+..
T Consensus        63 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   92 (245)
T PRK12937         63 DVADAAAVTRLFDAAETAFGRIDVLVNNAG   92 (245)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777666666555432223357899888764

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.63  E-value=0.072  Score=48.90  Aligned_cols=119  Identities=13%  Similarity=0.221  Sum_probs=67.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEeccccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~~~i~~   97 (292)
                      +|.+||+|.+|..++.+|++.|. ++++.|.+.-.   ..  .+  .+.|...+.-..+.+++. ++++-+...+..   
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~---~~--~~--~~~g~~~~~s~~~~~~~~~~advVi~~vp~~---   70 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEA---VD--VA--GKLGITARHSLEELVSKLEAPRTIWVMVPAG---   70 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHH---HH--HH--HHCCCeecCCHHHHHHhCCCCCEEEEEecCc---
Confidence            69999999999999999999986 57788865311   10  01  112222221222222221 134444443322   


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                       +.+.+.+..-.....+-.+||+++. .+.....+.+.+.++++.++++.+++
T Consensus        71 -~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G  122 (299)
T PRK12490         71 -EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSG  122 (299)
T ss_pred             -hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCC
Confidence             1222222111111234468888854 45555667778888899999988876

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.071  Score=46.94  Aligned_cols=86  Identities=17%  Similarity=0.252  Sum_probs=53.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.+++.+.                  .+.... +   +.. ..++..+.
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~------------------~~~~~~-~---~~~-~~~~~~~~   67 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSE------------------DVAEVA-A---QLL-GGNAKGLV   67 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHH-H---Hhh-CCceEEEE
Confidence            367899999986 9999999999999997 577766432                  011111 1   111 23444566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...+++....+.+.|+||.+..
T Consensus        68 ~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag   98 (255)
T PRK06841         68 CDVSDSQSVEAAVAAVISAFGRIDILVNSAG   98 (255)
T ss_pred             ecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            6666656665544332222356898888763

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.61  E-value=0.069  Score=46.51  Aligned_cols=89  Identities=19%  Similarity=0.275  Sum_probs=55.7

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |.+++|+|+|+ |++|..+++.|+..|...+.+++.+.                  .+.+.+.+.+....  -++..+..
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   62 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE------------------EAAQELLEEIKEEG--GDAIAVKA   62 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH------------------HHHHHHHHHHHhcC--CeEEEEEC
Confidence            56789999986 89999999999999975433324321                  23444455555433  34566677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...+......+.+.|+||.+..
T Consensus        63 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag   92 (247)
T PRK05565         63 DVSSEEDVENLVEQIVEKFGKIDILVNNAG   92 (247)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            777656655444322112247899987664

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.08  Score=47.41  Aligned_cols=88  Identities=20%  Similarity=0.214  Sum_probs=53.1

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ++++++|.|+ |++|..+++.|+..|. ++.+++.+.                  .+.+...+.+.....+.+++.+..+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~D   62 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNP------------------EKQENLLSQATQLNLQQNIKVQQLD   62 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCCCCceeEEecC
Confidence            4567888874 8999999999999986 466666432                  1222333334443434456666667


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+.. +++....+.+.|+||.+..
T Consensus        63 ~~d~~~~~~-~~~~~~~~~~id~vv~~ag   90 (280)
T PRK06914         63 VTDQNSIHN-FQLVLKEIGRIDLLVNNAG   90 (280)
T ss_pred             CCCHHHHHH-HHHHHHhcCCeeEEEECCc
Confidence            766555544 3322112356788887753

>PRK12744 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.091  Score=46.48  Aligned_cols=92  Identities=15%  Similarity=0.250  Sum_probs=57.0

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.| .|++|..+++.|+..|...+.+ +...              .-...+.+.+.+.++..  ..++..+..
T Consensus         6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i-~~~~--------------~~~~~~~~~~~~~l~~~--~~~~~~~~~   68 (257)
T PRK12744          6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI-HYNS--------------AASKADAEETVAAVKAA--GAKAVAFQA   68 (257)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE-ecCC--------------ccchHHHHHHHHHHHHh--CCcEEEEec
Confidence            5678899986 6799999999999999864433 3211              00112333444445443  245666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...+......+.+.|++|.+..
T Consensus        69 D~~~~~~~~~~~~~~~~~~~~id~li~~ag   98 (257)
T PRK12744         69 DLTTAAAVEKLFDDAKAAFGRPDIAINTVG   98 (257)
T ss_pred             CcCCHHHHHHHHHHHHHhhCCCCEEEECCc
Confidence            777766766555432223357898887764

>KOG1201|consensus

Probab=95.57  E-value=0.086  Score=48.18  Aligned_cols=90  Identities=22%  Similarity=0.334  Sum_probs=59.7

Q ss_pred             HHHHHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          11 NYEHIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        11 ~q~~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      .++.+++..|+|-|.| |+|.++|..+++-|. ++.+.|-..-                  =.+.-.+.++++  . ++.
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~------------------~~~etv~~~~~~--g-~~~   89 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQ------------------GNEETVKEIRKI--G-EAK   89 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEecccc------------------chHHHHHHHHhc--C-cee
Confidence            4567788889999776 899999999999998 7888773221                  111222333333  2 677


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .+..++++.+++....+.-...+++.|++|+..
T Consensus        90 ~y~cdis~~eei~~~a~~Vk~e~G~V~ILVNNA  122 (300)
T KOG1201|consen   90 AYTCDISDREEIYRLAKKVKKEVGDVDILVNNA  122 (300)
T ss_pred             EEEecCCCHHHHHHHHHHHHHhcCCceEEEecc
Confidence            777777776666654444344456778887654

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.56  E-value=0.066  Score=49.11  Aligned_cols=34  Identities=21%  Similarity=0.406  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +..+|+|+|+|++|...++.+...|+..+.++|.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            5668999999999999999888899998887764

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.56  E-value=0.051  Score=48.37  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++++++++|.|+   +|+|.++++.|++.|. ++.+.|.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r   41 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGF   41 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecC
Confidence            367889999996   7999999999999997 5777664

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.065  Score=46.87  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r   38 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGR   38 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecC
Confidence            356789999986 8999999999999997 5777654

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=95.56  E-value=0.15  Score=43.12  Aligned_cols=87  Identities=28%  Similarity=0.358  Sum_probs=58.3

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .++|+| .|++|..+++.|+..|..+|.|+-...               ...++.+..-+++++.  .+++..+..++++
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~---------------~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d   64 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG---------------APSAEAEAAIRELESA--GARVEYVQCDVTD   64 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG---------------GGSTTHHHHHHHHHHT--T-EEEEEE--TTS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC---------------CccHHHHHHHHHHHhC--CCceeeeccCccC
Confidence            467885 999999999999999999999865432               2333444455566654  5688888888888


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .+.+.+.+......+.+.+-||-+.
T Consensus        65 ~~~v~~~~~~~~~~~~~i~gVih~a   89 (181)
T PF08659_consen   65 PEAVAAALAQLRQRFGPIDGVIHAA   89 (181)
T ss_dssp             HHHHHHHHHTSHTTSS-EEEEEE--
T ss_pred             HHHHHHHHHHHHhccCCcceeeeee
Confidence            7888877766554445677777665

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=95.55  E-value=0.12  Score=46.62  Aligned_cols=95  Identities=19%  Similarity=0.301  Sum_probs=61.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .+|+|+|.-+-|..++..|...|..-+..+-.+                -|..       .+.. .+...  .+...++.
T Consensus         1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~----------------~~~~-------~~~~-~g~~~--v~~g~l~~   54 (256)
T TIGR00715         1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS----------------EGKH-------LYPI-HQALT--VHTGALDP   54 (256)
T ss_pred             CeEEEEechHHHHHHHHHHHhCCCeEEEEEccC----------------Cccc-------cccc-cCCce--EEECCCCH
Confidence            379999997789999999999885433332211                1111       1111 11112  22334443


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHH--HHHHHHHHHhCCceee
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEAR--MTINMACNQLGQTWFE  144 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r--~~in~~~~~~~~p~i~  144 (292)
                       +.+.+++.+     .++|+|||++..++..  ..+.++|.+.++|++-
T Consensus        55 -~~l~~~l~~-----~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR   97 (256)
T TIGR00715        55 -QELREFLKR-----HSIDILVDATHPFAAQITTNATAVCKELGIPYVR   97 (256)
T ss_pred             -HHHHHHHHh-----cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEE
Confidence             556666643     5799999999998754  6688899999999973

This enzyme was found to be a monomer by gel filtration.

>PRK06128 oxidoreductase; Provisional

Probab=95.55  E-value=0.078  Score=48.35  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=57.6

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .+|++++|+|.|+ |++|..+++.|++.|.. +.+.+.+.             +   ..+.+...+.++..  ..++..+
T Consensus        51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~~~~-------------~---~~~~~~~~~~~~~~--~~~~~~~  111 (300)
T PRK06128         51 GRLQGRKALITGADSGIGRATAIAFAREGAD-IALNYLPE-------------E---EQDAAEVVQLIQAE--GRKAVAL  111 (300)
T ss_pred             cccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEeCCc-------------c---hHHHHHHHHHHHHc--CCeEEEE
Confidence            3578899999976 89999999999999974 54443211             0   11223333444433  2355667


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+.++++.....+.+.|+||.+..
T Consensus       112 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lV~nAg  143 (300)
T PRK06128        112 PGDLKDEAFCRQLVERAVKELGGLDILVNIAG  143 (300)
T ss_pred             ecCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            77777766666555433223467899987654

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.55  E-value=0.086  Score=45.96  Aligned_cols=88  Identities=16%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.| .|++|..+++.|+..|. ++.+++.+.                  .+.+...+.+...  ..++..+.
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~   62 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTE------------------ENLKAVAEEVEAY--GVKVVIAT   62 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHh--CCeEEEEE
Confidence            35678899997 55899999999999998 788887542                  1222333344332  23566667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|+||.+.
T Consensus        63 ~D~~~~~~~~~~~~~~~~~~~~id~vi~~a   92 (239)
T PRK07666         63 ADVSDYEEVTAAIEQLKNELGSIDILINNA   92 (239)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCccEEEEcC
Confidence            777665666555433222235789988775

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.54  E-value=0.066  Score=46.91  Aligned_cols=89  Identities=15%  Similarity=0.166  Sum_probs=56.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +.+++|+|.|+ |++|..++..|+..|...+.+.+.                  ...+.+.+.+.++..+  .++..+..
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r------------------~~~~~~~~~~~~~~~~--~~~~~~~~   61 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR------------------SRKAAEETAEEIEALG--RKALAVKA   61 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC------------------CHHHHHHHHHHHHhcC--CeEEEEEc
Confidence            34678999976 799999999999998654332221                  1234555556665554  34566667


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...+++....+.+.|+||.+..
T Consensus        62 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag   91 (250)
T PRK08063         62 NVGDVEKIKEMFAQIDEEFGRLDVFVNNAA   91 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777766666555432222356899988763

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.54  E-value=0.029  Score=51.27  Aligned_cols=34  Identities=15%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD   48 (292)
                      .|++++|+|+|.|. +|..++.+|...|. ++++++
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~  189 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILH  189 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence            68999999999999 99999999999884 677765

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.095  Score=46.61  Aligned_cols=40  Identities=15%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             HHHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          10 ENYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      =+|.++++++++|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~   47 (245)
T PRK12367          7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS   47 (245)
T ss_pred             hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3699999999999987 7899999999999996 57777754

>PRK08264 short chain dehydrogenase; Validated

Probab=95.53  E-value=0.098  Score=45.52  Aligned_cols=36  Identities=31%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++++|+|.|+ |++|..+++.|++.|..++.+++.+
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~   40 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD   40 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence            56789999985 9999999999999998788888754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.53  E-value=0.079  Score=46.79  Aligned_cols=84  Identities=14%  Similarity=0.329  Sum_probs=51.6

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +.+++|+|.|+ |++|..+++.|++.|. ++.++|.+.-                  +.+.+.+.+   ..  ++.....
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~------------------~~~~~~~~~---~~--~~~~~~~   59 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPA------------------RARLAALEI---GP--AAIAVSL   59 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHH------------------HHHHHHHHh---CC--ceEEEEc
Confidence            56788999986 9999999999999996 5777764321                  222222222   21  2445555


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+...++.....+.+.|++|.+.
T Consensus        60 D~~~~~~~~~~~~~~~~~~~~id~li~~a   88 (257)
T PRK07067         60 DVTRQDSIDRIVAAAVERFGGIDILFNNA   88 (257)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66655555554433222235678888765

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.095  Score=46.63  Aligned_cols=88  Identities=18%  Similarity=0.299  Sum_probs=57.3

Q ss_pred             HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|.+ ++|..+++.|+..|. ++.++|.+.                  .+.+.+.+.++...  .++..+..
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~~   66 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTE------------------SQLDEVAEQIRAAG--RRAHVVAA   66 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence            567889999866 799999999999998 788877542                  23334444454433  34555666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        67 D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag   96 (263)
T PRK07814         67 DLAHPEATAGLAGQAVEAFGRLDIVVNNVG   96 (263)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            676656655444322222357899998654

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.53  E-value=0.092  Score=47.43  Aligned_cols=87  Identities=16%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             HhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      |+++.|+|.|+   +|+|.++|+.|++.|. ++.+.|.+.       +        ...+.+.+.+   +...  . ..+
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~-------~--------~~~~~~~~~~---~~~~--~-~~~   60 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNE-------A--------LKKRVEPIAQ---ELGS--D-YVY   60 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCH-------H--------HHHHHHHHHH---hcCC--c-eEE
Confidence            45788999998   4999999999999997 577766421       0        0011222211   2221  1 345


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+..+++.....+.+.|++|.+..
T Consensus        61 ~~Dv~d~~~v~~~~~~i~~~~g~iDilVnnAG   92 (274)
T PRK08415         61 ELDVSKPEHFKSLAESLKKDLGKIDFIVHSVA   92 (274)
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            56677666666555443333467888887754

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=95.52  E-value=0.2  Score=46.54  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=25.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++|+|.|+ |-+|+++++.|...|=-++..+|.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r   34 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM   34 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence            47999997 999999999999763236777764

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.52  E-value=0.072  Score=49.37  Aligned_cols=78  Identities=21%  Similarity=0.214  Sum_probs=54.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +...++|+|+|+|..|...+..+.. .++.++++++.+                  ..|++.+++++++..  ..+... 
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs------------------~~~a~~~a~~~~~~g--~~~~~~-  180 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD------------------PAKAEALAAELRAQG--FDAEVV-  180 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC------------------HHHHHHHHHHHHhcC--CceEEe-
Confidence            3456899999999999999987765 678899997643                  347777777776542  223322 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                            ++..+.+       .++|+|+.||...
T Consensus       181 ------~~~~~av-------~~aDIVi~aT~s~  200 (314)
T PRK06141        181 ------TDLEAAV-------RQADIISCATLST  200 (314)
T ss_pred             ------CCHHHHH-------hcCCEEEEeeCCC
Confidence                  2333333       6899999998864

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.52  E-value=0.05  Score=49.97  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=65.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHh-hCCCCeEEEEeccccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQN-INPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~-~np~v~v~~~~~~i~~   97 (292)
                      +|.|||+|..|+.++.+|++.|. ++.+.|.+.-...-+...       |...+....+.... ..+++-+...+.....
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~   73 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED-------RTTGVANLRELSQRLSAPRVVWVMVPHGIVD   73 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-------CCcccCCHHHHHhhcCCCCEEEEEcCchHHH
Confidence            69999999999999999999985 577777654221111110       11111111111111 1244444443332111


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCC-HHHHHHHHHHHHHhCCceeecCccc
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDN-FEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~-~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                       +-++.+..    .+.+-++||+++.. +.....+.+.+.+.++.++++++++
T Consensus        74 -~v~~~l~~----~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG  121 (298)
T TIGR00872        74 -AVLEELAP----TLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG  121 (298)
T ss_pred             -HHHHHHHh----hCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence             22222221    12445799998765 3444555667778899999998875

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.52  E-value=0.086  Score=50.64  Aligned_cols=36  Identities=31%  Similarity=0.359  Sum_probs=32.4

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+++|+|+|+|.+|..+++.+...|. +++++|.|.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence            679999999999999999999999998 588888665

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.51  E-value=0.091  Score=45.96  Aligned_cols=88  Identities=23%  Similarity=0.388  Sum_probs=55.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|+ |++|..+++.|++.|. ++.++|.+.                  .+.+.+.+.+.+...  ++..+..
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~   59 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNR------------------EAAEKVAADIRAKGG--NAQAFAC   59 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCH------------------HHHHHHHHHHHhcCC--cEEEEEc
Confidence            46789999985 8899999999999886 577765432                  233444455544333  3555566


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.+..-...+.+.|+||.+..
T Consensus        60 d~~~~~~~~~~~~~~~~~~~~~d~vi~~ag   89 (250)
T TIGR03206        60 DITDRDSVDTAVAAAEQALGPVDVLVNNAG   89 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666555555544322222356898887763

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.51  E-value=0.048  Score=49.15  Aligned_cols=88  Identities=16%  Similarity=0.127  Sum_probs=52.8

Q ss_pred             HHHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          13 EHIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        13 ~~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      .++++++++|.|+   +|+|.++|+.|++.|. ++.+++.+.   .            -..+.+.+++.+    ..  ..
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~---~------------~~~~~~~l~~~~----~~--~~   63 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD---A------------LKKRVEPLAAEL----GA--FV   63 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch---H------------HHHHHHHHHHhc----CC--ce
Confidence            3677889999998   5999999999999997 566654210   0            011222222221    11  23


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .+..++++.+.++.+++.....+...|++|.+.
T Consensus        64 ~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nA   96 (272)
T PRK08159         64 AGHCDVTDEASIDAVFETLEKKWGKLDFVVHAI   96 (272)
T ss_pred             EEecCCCCHHHHHHHHHHHHHhcCCCcEEEECC
Confidence            355666666666655544333345678888764

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.51  E-value=0.092  Score=47.03  Aligned_cols=23  Identities=13%  Similarity=0.205  Sum_probs=21.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI   41 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv   41 (292)
                      +|.|||+|.+|..++..|.+.|.
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~   24 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPA   24 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC
Confidence            69999999999999999999885

>PRK07024 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.085  Score=46.72  Aligned_cols=85  Identities=21%  Similarity=0.256  Sum_probs=53.2

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.| .|++|..+++.|++.|. ++.++|.+.                  .+.+.+.+.+...  . ++..+..++
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~--~-~~~~~~~Dl   59 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRT------------------DALQAFAARLPKA--A-RVSVYAADV   59 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHhcccC--C-eeEEEEcCC
Confidence            35788886 78999999999999997 688877542                  1222233333211  1 566677777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+.+.++.....+...|++|.+..
T Consensus        60 ~~~~~i~~~~~~~~~~~g~id~lv~~ag   87 (257)
T PRK07024         60 RDADALAAAAADFIAAHGLPDVVIANAG   87 (257)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            7666665544322212345788887653

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.059  Score=47.00  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+++++++|.|+ |++|..+++.|++.|. ++.+++.
T Consensus         6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r   41 (245)
T PRK07060          6 DFSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR   41 (245)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence            366789999998 7999999999999997 5887774

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.098  Score=46.11  Aligned_cols=85  Identities=18%  Similarity=0.288  Sum_probs=54.7

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++++|.|+ |++|..+++.|++.|. ++.++|.+.                  .+.+.+++.+.+..  -++..+..++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~D~   59 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTK------------------EKLEEAKLEIEQFP--GQVLTVQMDV   59 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEecC
Confidence            357888876 6799999999999998 788877542                  13333444444432  2455666677


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+...+++....+.+.|+||.+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~id~lI~~a   86 (252)
T PRK07677         60 RNPEDVQKMVEQIDEKFGRIDALINNA   86 (252)
T ss_pred             CCHHHHHHHHHHHHHHhCCccEEEECC
Confidence            766666655443222235789988765

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.48  E-value=0.037  Score=51.17  Aligned_cols=30  Identities=23%  Similarity=0.628  Sum_probs=26.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      .||+|+|+|++|+..+..|+++| ..++++-
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~   30 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV   30 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence            48999999999999999999999 7666644

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.48  E-value=0.052  Score=48.47  Aligned_cols=88  Identities=9%  Similarity=0.075  Sum_probs=51.4

Q ss_pred             HHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      +|++++++|.|+   +|+|.++|+.|++.|. ++.+.+.+  +                 |.....+.+.+....  ...
T Consensus         3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~--~-----------------~~~~~~~~~~~~~~~--~~~   60 (261)
T PRK08690          3 FLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVV--D-----------------KLEERVRKMAAELDS--ELV   60 (261)
T ss_pred             ccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCc--H-----------------HHHHHHHHHHhccCC--ceE
Confidence            477889999994   5999999999999997 45554321  0                 111111112211112  234


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +..++++.+.++.+++.....+.+.|++|.+..
T Consensus        61 ~~~Dv~~~~~v~~~~~~~~~~~g~iD~lVnnAG   93 (261)
T PRK08690         61 FRCDVASDDEINQVFADLGKHWDGLDGLVHSIG   93 (261)
T ss_pred             EECCCCCHHHHHHHHHHHHHHhCCCcEEEECCc
Confidence            556666666666555433323457888887753

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.47  E-value=0.058  Score=47.91  Aligned_cols=34  Identities=21%  Similarity=0.438  Sum_probs=28.1

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      |++++++|.|+ |++|..+++.|++.|. ++.++|.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r   37 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDK   37 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999986 6899999999999997 4667653

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.47  E-value=0.14  Score=40.33  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          19 TVIVVG-VGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        19 ~V~vvG-~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ||.|+| .|-+|..+++.|...-- ..+.++....              ..|++=.....    .....-.+...+  ..
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~--------------~~g~~~~~~~~----~~~~~~~~~~~~--~~   60 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR--------------SAGKPLSEVFP----HPKGFEDLSVED--AD   60 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT--------------TTTSBHHHTTG----GGTTTEEEBEEE--TS
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc--------------ccCCeeehhcc----ccccccceeEee--cc
Confidence            699999 99999999999998432 2333333222              24442222111    111111222222  11


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGV  147 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~  147 (292)
                      . +.+           .+.|+||.|+++...+.+...+ .+.|+++|+.+.
T Consensus        61 ~-~~~-----------~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~   98 (121)
T PF01118_consen   61 P-EEL-----------SDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSG   98 (121)
T ss_dssp             G-HHH-----------TTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSS
T ss_pred             h-hHh-----------hcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCH
Confidence            1 222           6899999999998777766655 788998888644

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.47  E-value=0.094  Score=46.51  Aligned_cols=100  Identities=12%  Similarity=0.181  Sum_probs=61.5

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      +|++++|+|.|++   |+|.++++.|+..|. ++.+.+-..     ..|....  .....+...+.+.+++.  ..++..
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~--g~~~~~   72 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTYWTA-----YDKEMPW--GVDQDEQIQLQEELLKN--GVKVSS   72 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeccc-----ccccccc--cccHHHHHHHHHHHHhc--CCeEEE
Confidence            5788999999995   899999999999997 466654211     1111000  00112233444555543  346667


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +..++++.+.+.+.+......+.+.|+||.+..
T Consensus        73 ~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag  105 (256)
T PRK12859         73 MELDLTQNDAPKELLNKVTEQLGYPHILVNNAA  105 (256)
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence            777777767776655433323456899997763

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.46  E-value=0.038  Score=51.04  Aligned_cols=32  Identities=34%  Similarity=0.482  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .||.|+|+|-+|+.+|..|+..|.+++.++|-
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            48999999999999999999999878999996

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.45  E-value=0.078  Score=47.20  Aligned_cols=87  Identities=15%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      +++++.++|.|++   |+|.++|+.|++.|. ++.++|.+.              + ...+.+.+++.+    +.  +..
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~--------------~-~~~~~~~~~~~~----~~--~~~   64 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLND--------------K-ARPYVEPLAEEL----DA--PIF   64 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCh--------------h-hHHHHHHHHHhh----cc--ceE
Confidence            4678899999985   899999999999996 577766431              0 001222222222    12  234


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +..++++.+.+..+++.....+.+.|++|.+.
T Consensus        65 ~~~D~~~~~~v~~~~~~~~~~~g~ld~lv~nA   96 (258)
T PRK07533         65 LPLDVREPGQLEAVFARIAEEWGRLDFLLHSI   96 (258)
T ss_pred             EecCcCCHHHHHHHHHHHHHHcCCCCEEEEcC
Confidence            55666665666555443322345788888765

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.45  E-value=0.1  Score=48.61  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=54.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|+|+|+.|...+..|.. .++.++++++.+.                  .|++.+++++++.. .+++...    
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~------------------~~a~~l~~~~~~~~-g~~v~~~----  188 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDA------------------AKAEAYAADLRAEL-GIPVTVA----  188 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCH------------------HHHHHHHHHHhhcc-CceEEEe----
Confidence            4689999999999999999985 5789999976433                  37777777776433 2443322    


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                         +++++.+       .++|+|+.|+...
T Consensus       189 ---~d~~~al-------~~aDiVi~aT~s~  208 (330)
T PRK08291        189 ---RDVHEAV-------AGADIIVTTTPSE  208 (330)
T ss_pred             ---CCHHHHH-------ccCCEEEEeeCCC
Confidence               3344444       6799999998763

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.45  E-value=0.13  Score=47.93  Aligned_cols=36  Identities=28%  Similarity=0.425  Sum_probs=32.0

Q ss_pred             HHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          12 YEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        12 q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      .+.|++++|.|||.|.+|..+|++|..+|+ ++++.|
T Consensus        11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~   46 (335)
T PRK13403         11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV   46 (335)
T ss_pred             hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence            478999999999999999999999999998 465655

>PRK05717 oxidoreductase; Validated

Probab=95.44  E-value=0.079  Score=46.81  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+++++|+|.|. |++|..+++.|++.|. ++.++|.
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~   42 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADL   42 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcC
Confidence            456788999985 8999999999999995 6777764

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.44  E-value=0.038  Score=51.47  Aligned_cols=35  Identities=29%  Similarity=0.567  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      ++-.||+|+|+ |.+|+.++..|+..|. .+|.|+|-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            45669999999 9999999999997776 57999996

>KOG1205|consensus

Probab=95.40  E-value=0.095  Score=47.82  Aligned_cols=93  Identities=16%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             HHHHHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          11 NYEHIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        11 ~q~~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ..+++.++.|+|-|+- |+|-++|+.|++.|..-+.++=.                   ..+-+-.++.+++..+.-++.
T Consensus         6 ~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~-------------------~rrl~~v~~~l~~~~~~~~v~   66 (282)
T KOG1205|consen    6 FMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARR-------------------ARRLERVAEELRKLGSLEKVL   66 (282)
T ss_pred             cHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehh-------------------hhhHHHHHHHHHHhCCcCccE
Confidence            4578999999999985 89999999999999875544210                   123445555666655444788


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ....++++.+.....++.....+.+.|++|+-.
T Consensus        67 ~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNA   99 (282)
T KOG1205|consen   67 VLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNA   99 (282)
T ss_pred             EEeCccCCHHHHHHHHHHHHHhcCCCCEEEecC
Confidence            888889887777766544444568999988654

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.40  E-value=0.05  Score=53.09  Aligned_cols=37  Identities=32%  Similarity=0.490  Sum_probs=33.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .|.+++|+|+|.|.+|..+|+.|...|. +++++|.|.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp  287 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP  287 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            5789999999999999999999999998 688887654

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.081  Score=46.85  Aligned_cols=88  Identities=20%  Similarity=0.296  Sum_probs=54.5

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++++|.| .|++|..+++.|+..|.. +.+++.+.                   +.....+.+.+.  ..++....
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~~-------------------~~~~~~~~~~~~--~~~~~~~~   60 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDISP-------------------EIEKLADELCGR--GHRCTAVV   60 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCH-------------------HHHHHHHHHHHh--CCceEEEE
Confidence            46678899996 678999999999999974 77776421                   112222333322  33455666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..++......+.+.|+||.+..
T Consensus        61 ~Dl~~~~~v~~~~~~~~~~~~~id~vi~~ag   91 (263)
T PRK08226         61 ADVRDPASVAAAIKRAKEKEGRIDILVNNAG   91 (263)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6776656665544332222356788887653

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.38  E-value=0.29  Score=48.96  Aligned_cols=83  Identities=19%  Similarity=0.335  Sum_probs=51.7

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-------CCC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-------PDV   86 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-------p~v   86 (292)
                      ..+++|+|.|+ |++|..+++.|++.|. ++++++.+.                  .|.+.+.+.+.++.       +.-
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~------------------ekl~~l~~~l~~~~L~~~Ga~~~~  138 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA------------------QRAESLVQSVKQMKLDVEGTQPVE  138 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHhhhhccccccccccC
Confidence            35667888886 8999999999999986 466554332                  12333333332211       112


Q ss_pred             eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          87 TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        87 ~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+..++++.+.+.+.+       .++|+||.+..
T Consensus       139 ~v~iV~gDLtD~esI~~aL-------ggiDiVVn~AG  168 (576)
T PLN03209        139 KLEIVECDLEKPDQIGPAL-------GNASVVICCIG  168 (576)
T ss_pred             ceEEEEecCCCHHHHHHHh-------cCCCEEEEccc
Confidence            3556666776655555544       68999998864

>PRK06720 hypothetical protein; Provisional

Probab=95.38  E-value=0.15  Score=42.95  Aligned_cols=36  Identities=39%  Similarity=0.603  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++++.++|.|.+ |+|..++..|+..| .++.++|.+
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~   49 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDID   49 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECC
Confidence            4678889999875 69999999999999 468887754

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.38  E-value=0.11  Score=46.69  Aligned_cols=95  Identities=13%  Similarity=0.121  Sum_probs=59.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++++|.|+ |++|..+++.|+..|. ++.++|...-..          ... ..+.+.+++.++..  ..++..+..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~----------~~~-~~~l~~~~~~~~~~--~~~~~~~~~   69 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPH----------PKL-PGTIHTAAEEIEAA--GGQALPLVG   69 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccc----------cch-hhHHHHHHHHHHhc--CCceEEEEe
Confidence            56788999985 8999999999999997 677777542110          000 11233444555543  235666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...+......+.+.|+||.+..
T Consensus        70 D~~~~~~i~~~~~~~~~~~g~id~li~~ag   99 (273)
T PRK08278         70 DVRDEDQVAAAVAKAVERFGGIDICVNNAS   99 (273)
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            777766666555432222357899987754

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.37  E-value=0.11  Score=45.80  Aligned_cols=98  Identities=12%  Similarity=0.144  Sum_probs=59.0

Q ss_pred             HhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      |+.++|+|.|++   ++|..+++.|+..|. ++.+++....+.. ..      .+-.......+.+.+...  ..+++.+
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~~~~~-~~------~~~~~~~~~~~~~~~~~~--~~~~~~~   72 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSPYDKT-MP------WGMHDKEPVLLKEEIESY--GVRCEHM   72 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCccccc-cc------cccchhhHHHHHHHHHhc--CCeEEEE
Confidence            567789999985   799999999999996 7888775432210 00      000111122233434332  3356677


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++++.+.+...++.....+...|+||.+.
T Consensus        73 ~~D~~~~~~~~~~~~~~~~~~g~id~vi~~a  103 (256)
T PRK12748         73 EIDLSQPYAPNRVFYAVSERLGDPSILINNA  103 (256)
T ss_pred             ECCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            7777766665554443332345789998876

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.35  E-value=0.1  Score=46.20  Aligned_cols=83  Identities=16%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +|+|.|+ ||+|..+++.|+..|. ++.++|.+.                  .+.+.+.+.+++. .  ++..+..++++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~-~--~~~~~~~Dv~d   59 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNE------------------ENLEKALKELKEY-G--EVYAVKADLSD   59 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhc-C--CceEEEcCCCC
Confidence            6888875 7899999999999997 577766431                  2334444445432 2  45566777776


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+.+.++++.....+.+.|+||.+..
T Consensus        60 ~~~~~~~~~~~~~~~g~id~li~naG   85 (259)
T PRK08340         60 KDDLKNLVKEAWELLGGIDALVWNAG   85 (259)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            66666655433223467899987754

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.34  E-value=0.0053  Score=55.99  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence            479999999999999999999996 588888764

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.34  E-value=0.11  Score=45.69  Aligned_cols=84  Identities=23%  Similarity=0.355  Sum_probs=53.1

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++++|.|+ |++|..+++.|+..|. ++.++|.+.                  .+.+.+.+.+    +..+++.+..++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~------------------~~~~~~~~~~----~~~~~~~~~~D~   58 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDA------------------AALAAFADAL----GDARFVPVACDL   58 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh----cCCceEEEEecC
Confidence            468999987 8999999999999985 688876432                  1222233333    234566667777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+.+.+...+......+.+.|+||.+..
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag   86 (257)
T PRK07074         59 TDAASLAAALANAAAERGPVDVLVANAG   86 (257)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6666655444322112246888888763

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.33  E-value=0.093  Score=49.03  Aligned_cols=36  Identities=25%  Similarity=0.570  Sum_probs=31.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~  178 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY  178 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            6889999999999999999999999886 57777753

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.31  E-value=0.13  Score=51.53  Aligned_cols=78  Identities=22%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +.||+|+|+|.+|..+++.|...|. +++++|.|.-                  |++.    +++.    .......+.+
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~------------------~~~~----~~~~----g~~~i~GD~~  469 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT------------------RVDE----LRER----GIRAVLGNAA  469 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH------------------HHHH----HHHC----CCeEEEcCCC
Confidence            4799999999999999999999996 5899998761                  2222    2222    2334455555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHH
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEA  127 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~  127 (292)
                      +++-+++.      ..+++|.|+.++++...
T Consensus       470 ~~~~L~~a------~i~~a~~viv~~~~~~~  494 (558)
T PRK10669        470 NEEIMQLA------HLDCARWLLLTIPNGYE  494 (558)
T ss_pred             CHHHHHhc------CccccCEEEEEcCChHH
Confidence            53333321      13689988877766443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.31  E-value=0.031  Score=51.07  Aligned_cols=33  Identities=33%  Similarity=0.598  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            489999999999999999999996 599999664

>PRK06182 short chain dehydrogenase; Validated

Probab=95.30  E-value=0.061  Score=48.12  Aligned_cols=81  Identities=20%  Similarity=0.264  Sum_probs=49.0

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ++++|+|.|+ |++|.++++.|+..|. ++.+++.+.                  .|.+.    +...    .++.+..+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~------------------~~l~~----~~~~----~~~~~~~D   54 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRV------------------DKMED----LASL----GVHPLSLD   54 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHH----HHhC----CCeEEEee
Confidence            4678999986 8999999999999886 466655332                  01111    1111    23445556


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+...++.....+.+.|+||.+..
T Consensus        55 v~~~~~~~~~~~~~~~~~~~id~li~~ag   83 (273)
T PRK06182         55 VTDEASIKAAVDTIIAEEGRIDVLVNNAG   83 (273)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            66656665544322222357899988764

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.29  E-value=0.14  Score=47.95  Aligned_cols=22  Identities=36%  Similarity=0.726  Sum_probs=19.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHh
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRC   39 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~   39 (292)
                      -+|.|+|+|.+|+.+++.|...
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4899999999999999999865

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.04  Score=49.22  Aligned_cols=83  Identities=20%  Similarity=0.273  Sum_probs=49.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|..+++.|+..|.. +.+++.+.                  .+.+.+.+.+.      ++..+..
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~------------------~~~~~~~~~~~------~~~~~~~   57 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLDE------------------ALAKETAAELG------LVVGGPL   57 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCH------------------HHHHHHHHHhc------cceEEEc
Confidence            45678999987 89999999999999975 66665432                  12222222221      2344555


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+...++.-...+.+.|++|.+.
T Consensus        58 D~~~~~~~~~~~~~~~~~~~~id~li~~a   86 (273)
T PRK07825         58 DVTDPASFAAFLDAVEADLGPIDVLVNNA   86 (273)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66655555444433222235678888765

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.28  E-value=0.1  Score=53.49  Aligned_cols=90  Identities=23%  Similarity=0.265  Sum_probs=58.9

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|.++++.|+..|. ++.++|.+.                  .+.+.+.+.+.+....-++..+..
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~------------------~~~~~~~~~l~~~~~~~~~~~v~~  472 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNL------------------EAAEAVAAEINGQFGAGRAVALKM  472 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCH------------------HHHHHHHHHHHhhcCCCcEEEEEC
Confidence            35678888876 8999999999999997 677777432                  133344444544333334556677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus       473 Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG  502 (676)
T TIGR02632       473 DVTDEQAVKAAFADVALAYGGVDIVVNNAG  502 (676)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence            777766666555433333467899887764

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.27  E-value=0.12  Score=45.56  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=57.3

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++++|.| .|++|.++++.|+..|. ++.++|.+.                 ..+.+.+.+.++...  .++..+.
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~-----------------~~~~~~~~~~l~~~~--~~~~~~~   64 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRT-----------------DDGLAETAEHIEAAG--RRAIQIA   64 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc-----------------chHHHHHHHHHHhcC--CceEEEE
Confidence            46778888886 56999999999999997 566766431                 112333444555443  2445566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.....+.+.|+||.+..
T Consensus        65 ~D~~~~~~i~~~~~~~~~~~g~id~li~~ag   95 (254)
T PRK06114         65 ADVTSKADLRAAVARTEAELGALTLAVNAAG   95 (254)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6676656666555433333457798887764

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.26  E-value=0.19  Score=45.59  Aligned_cols=80  Identities=16%  Similarity=0.284  Sum_probs=50.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +|.|||+|.+|+.++..|.+.|.   .++.++|.+.-                 .|.+    .+....+.+.+.      
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~-----------------~~~~----~l~~~~~~~~~~------   55 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN-----------------EHFN----QLYDKYPTVELA------   55 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH-----------------HHHH----HHHHHcCCeEEe------
Confidence            69999999999999999999883   46777665320                 1211    122222222221      


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC  135 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~  135 (292)
                         .+..+.+       .++|+||.|+-....+..+.++.
T Consensus        56 ---~~~~e~~-------~~aDvVilavpp~~~~~vl~~l~   85 (277)
T PRK06928         56 ---DNEAEIF-------TKCDHSFICVPPLAVLPLLKDCA   85 (277)
T ss_pred             ---CCHHHHH-------hhCCEEEEecCHHHHHHHHHHHH
Confidence               1222222       57899999998877777666654

>PRK05855 short chain dehydrogenase; Validated

Probab=95.25  E-value=0.079  Score=52.30  Aligned_cols=90  Identities=19%  Similarity=0.221  Sum_probs=62.1

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..+++.+++|+|+ ||+|..+++.|+..|.. +.++|.+                  ..+.+.+.+.+++...  ++..+
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~------------------~~~~~~~~~~~~~~~~--~~~~~  369 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDID------------------EAAAERTAELIRAAGA--VAHAY  369 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCC------------------HHHHHHHHHHHHhcCC--eEEEE
Confidence            4567889999986 99999999999999985 7776632                  1355555556655433  56677


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+.++++.....+...|++|.+..
T Consensus       370 ~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag  401 (582)
T PRK05855        370 RVDVSDADAMEAFAEWVRAEHGVPDIVVNNAG  401 (582)
T ss_pred             EcCCCCHHHHHHHHHHHHHhcCCCcEEEECCc
Confidence            77887766666555432223356899988763

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=95.25  E-value=0.099  Score=45.74  Aligned_cols=88  Identities=13%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +++.++|.|+ |++|..+++.|++.|...+.+.+.+.                  .+.....+.+...  ..++..+..+
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~------------------~~~~~~~~~~~~~--~~~~~~~~~D   61 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS------------------PRRVKWLEDQKAL--GFDFIASEGN   61 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh------------------HHHHHHHHHHHhc--CCcEEEEEcC
Confidence            4677888875 99999999999999975433322111                  1112222233332  3455566667


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+.+.+++....+.+.|+||.+..
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~id~li~~ag   90 (246)
T PRK12938         62 VGDWDSTKAAFDKVKAEVGEIDVLVNNAG   90 (246)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            77666665554332222357899988764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.24  E-value=0.18  Score=48.40  Aligned_cols=40  Identities=28%  Similarity=0.470  Sum_probs=33.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR   59 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R   59 (292)
                      +|.|||+|-+|..+|..|+..|. +++++|.+.-....+++
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~   41 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNK   41 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhc
Confidence            69999999999999999999997 58899987654444554

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.23  E-value=0.16  Score=45.93  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHh-CCCeEEEEe
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRC-GIGKLILFD   48 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD   48 (292)
                      .||.|+|+|.+|..+++.|... ++.-..+++
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~   33 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIV   33 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEE
Confidence            3899999999999999999876 343333443

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.23  E-value=0.14  Score=47.44  Aligned_cols=90  Identities=19%  Similarity=0.229  Sum_probs=58.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++|.|+|+|.+|..+|+.|...|+ ++..+|...-.            .                 +.+.  ... 
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~------------~-----------------~~~~--~~~-  179 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKS------------W-----------------PGVQ--SFA-  179 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCC------------C-----------------CCce--eec-
Confidence            5788999999999999999999999997 46666642100            0                 0110  000 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHH---hCCceeecC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQ---LGQTWFESG  146 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~---~~~p~i~~~  146 (292)
                         ....+++++       .++|+|+.+.. +.+++..+|+-..+   .+.-+|+.+
T Consensus       180 ---~~~~l~e~l-------~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        180 ---GREELSAFL-------SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             ---ccccHHHHH-------hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence               013455555       68999988875 56788888764333   244455543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.21  E-value=0.097  Score=48.31  Aligned_cols=77  Identities=14%  Similarity=0.140  Sum_probs=55.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +...++|+|+|+|..|...++.+.. .++.++.+.|.+                  ..|++.+++++++..  +.+. . 
T Consensus       122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~------------------~~~a~~~a~~~~~~~--~~~~-~-  179 (304)
T PRK07340        122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT------------------AASAAAFCAHARALG--PTAE-P-  179 (304)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC------------------HHHHHHHHHHHHhcC--CeeE-E-
Confidence            3456899999999999999999975 578889987754                  347888888876542  2222 1 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                            ++.++.+       .++|+|+.||.+.
T Consensus       180 ------~~~~~av-------~~aDiVitaT~s~  199 (304)
T PRK07340        180 ------LDGEAIP-------EAVDLVVTATTSR  199 (304)
T ss_pred             ------CCHHHHh-------hcCCEEEEccCCC
Confidence                  2333333       6899999999874

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.12  Score=45.51  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=55.5

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++++|.| .|++|..+++.|+..|.. +.+++.+.                  ++. .+.+.+++...  ++..+.
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~~------------------~~~-~~~~~~~~~~~--~~~~~~   61 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRSA------------------PDD-EFAEELRALQP--RAEFVQ   61 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCCh------------------hhH-HHHHHHHhcCC--ceEEEE
Confidence            57888999998 578999999999999975 55554321                  111 12233444333  455667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        62 ~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag   92 (258)
T PRK08628         62 VDLTDDAQCRDAVEQTVAKFGRIDGLVNNAG   92 (258)
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            7777666665554432222356888888764

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.20  E-value=0.12  Score=44.79  Aligned_cols=87  Identities=15%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|..+++.|+..|. ++.+++.+.                  .+.+.+.+.+...   -+++.+..
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~---~~~~~~~~   60 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNE------------------NKLKRMKKTLSKY---GNIHYVVG   60 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc---CCeEEEEC
Confidence            56789999987 6799999999999997 577765421                  1223333333321   13555666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+...|.++.+..
T Consensus        61 Dl~~~~~~~~~~~~~~~~~~~id~ii~~ag   90 (238)
T PRK05786         61 DVSSTESARNVIEKAAKVLNAIDGLVVTVG   90 (238)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence            666655555544322212346788877664

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.19  E-value=0.16  Score=46.02  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=26.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRC--GIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~--Gvg~i~lvD~D   50 (292)
                      +..||.|||+|.+|..++..|...  |+.-..+.|.+
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~   41 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD   41 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence            456899999999999999999874  44333355644

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.16  E-value=0.1  Score=46.29  Aligned_cols=85  Identities=14%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|+..|.. +.++|.+.                  .+.+.+.+.+   .  -++..+..
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~---~--~~~~~~~~   59 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGAR-VAVLERSA------------------EKLASLRQRF---G--DHVLVVEG   59 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHh---C--CcceEEEc
Confidence            56788999986 68999999999999974 77776432                  1222222221   1  13344555


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...+++....+.+.|++|.+..
T Consensus        60 D~~~~~~~~~~~~~~~~~~g~id~li~~ag   89 (263)
T PRK06200         60 DVTSYADNQRAVDQTVDAFGKLDCFVGNAG   89 (263)
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            565545555444332222356788877653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.15  E-value=0.062  Score=49.81  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +|.|+|+|++|+.++..|++.| .++++++.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCH
Confidence            6999999999999999999998 4578887643

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.15  E-value=0.12  Score=46.02  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=50.6

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      +++++.++|.|++   |+|.++|+.|++.|. ++.+.|.+.                   +.+...+.+.+.... . ..
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~-------------------~~~~~~~~l~~~~g~-~-~~   62 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE-------------------VLEKRVKPLAEEIGC-N-FV   62 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch-------------------HHHHHHHHHHHhcCC-c-eE
Confidence            3567888999996   799999999999997 476655321                   111111222221111 1 23


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +..++++.+.++..++.....+.+.|++|...
T Consensus        63 ~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnna   94 (260)
T PRK06603         63 SELDVTNPKSISNLFDDIKEKWGSFDFLLHGM   94 (260)
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCccEEEEcc
Confidence            45566665666555543333346788887754

>PLN02240 UDP-glucose 4-epimerase

Probab=95.15  E-value=0.43  Score=44.13  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=51.7

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC--CCeEEEE
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP--DVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np--~v~v~~~   91 (292)
                      |++++|+|.|+ |.+|+.+++.|+..|. +++++|...       +           +.....+++.+...  .-+++.+
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~~~~~~   63 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDNLD-------N-----------SSEEALRRVKELAGDLGDNLVFH   63 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCC-------c-----------chHHHHHHHHHhhcccCccceEE
Confidence            56789999986 8999999999999985 677776311       0           00001112222110  1234555


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...+..     .++|+||.+..
T Consensus        64 ~~D~~~~~~l~~~~~~-----~~~d~vih~a~   90 (352)
T PLN02240         64 KVDLRDKEALEKVFAS-----TRFDAVIHFAG   90 (352)
T ss_pred             ecCcCCHHHHHHHHHh-----CCCCEEEEccc
Confidence            6667666666665532     26899998763

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=95.14  E-value=0.079  Score=49.77  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=55.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-------CeEEEEeCCcccccCCCCCccCcCCC-CChHHHHHHHHHH--hhCCCCeE
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI-------GKLILFDYDKVELANMNRLFFQPDQC-GLSKVEAARITLQ--NINPDVTI   88 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv-------g~i~lvD~D~V~~sNl~R~~~~~~di-G~~Ka~a~~~~l~--~~np~v~v   88 (292)
                      ||.|+|+|..|+++|..|+..|.       .++++...+.              ++ +..=++...+.-.  +..|.++.
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~--------------~~~~~~~~~~in~~~~n~~ylpgi~L   66 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE--------------EIEGRNLTEIINTTHENVKYLPGIKL   66 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc--------------ccCCHHHHHHHHhcCCCccccCCCcC
Confidence            68999999999999999999873       3566654321              11 1111111111100  00122211


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHH--HhCCceee
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACN--QLGQTWFE  144 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~--~~~~p~i~  144 (292)
                         +..+.-..++.+.+       .+.|+||.++.+...+..+.++..  +.+.+++.
T Consensus        67 ---p~~i~at~dl~eal-------~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs  114 (342)
T TIGR03376        67 ---PANLVAVPDLVEAA-------KGADILVFVIPHQFLEGICKQLKGHVKPNARAIS  114 (342)
T ss_pred             ---CCCeEEECCHHHHH-------hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEE
Confidence               11111113444444       678999999999888877666542  23445543

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=95.14  E-value=0.082  Score=49.28  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=28.4

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGI-G-----KLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gv-g-----~i~lvD~   49 (292)
                      .||.|+|+ |.+|+.+|..|+..|+ +     +|.|+|-
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   42 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI   42 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence            48999999 9999999999999886 5     6999874

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.13  E-value=0.17  Score=44.16  Aligned_cols=86  Identities=16%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++++|.|+ |++|..+++.|++.|. ++.++|.+.                  .+.+.+.+.+++..  .++..+..++
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~D~   64 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW-DLALVARSQ------------------DALEALAAELRSTG--VKAAAYSIDL   64 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhCC--CcEEEEEccC
Confidence            457889986 8999999999999997 688776432                  13333444444332  3455666777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+...++.....+.+.|+||.+..
T Consensus        65 ~~~~~~~~~~~~~~~~~~~id~lv~~ag   92 (241)
T PRK07454         65 SNPEAIAPGIAELLEQFGCPDVLINNAG   92 (241)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7656555444322222356899998764

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.11  E-value=0.13  Score=46.30  Aligned_cols=87  Identities=14%  Similarity=0.140  Sum_probs=52.5

Q ss_pred             HhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      |+++.++|.|++   |+|.++|+.|++.|. ++.++|.+.                  ...+.+++...+.. ..  ..+
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~------------------~~~~~~~~~~~~~g-~~--~~~   62 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGE------------------ALGKRVKPLAESLG-SD--FVL   62 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCch------------------HHHHHHHHHHHhcC-Cc--eEE
Confidence            567889999997   899999999999996 566655321                  01111111111121 11  245


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+..+++.....+...|++|.+..
T Consensus        63 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG   94 (271)
T PRK06505         63 PCDVEDIASVDAVFEALEKKWGKLDFVVHAIG   94 (271)
T ss_pred             eCCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            56777666666555443333467888887754

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.11  E-value=0.12  Score=46.99  Aligned_cols=80  Identities=16%  Similarity=0.211  Sum_probs=51.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +.+|.+||+|-+|..++..|...|.   .++.+.|.+.                  .|.+.    +.+.. .+++  .. 
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~------------------~~~~~----l~~~~-g~~~--~~-   55 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV------------------SNLKN----ASDKY-GITI--TT-   55 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH------------------HHHHH----HHHhc-CcEE--eC-
Confidence            4589999999999999999999885   3566655422                  12222    22211 2322  11 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC  135 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~  135 (292)
                            +..+.+       .++|+||.|+-+...+..+.++.
T Consensus        56 ------~~~e~~-------~~aDiIiLavkP~~~~~vl~~l~   84 (272)
T PRK12491         56 ------NNNEVA-------NSADILILSIKPDLYSSVINQIK   84 (272)
T ss_pred             ------CcHHHH-------hhCCEEEEEeChHHHHHHHHHHH
Confidence                  112222       57899999999877777776655

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.11  E-value=0.094  Score=49.70  Aligned_cols=97  Identities=13%  Similarity=0.180  Sum_probs=55.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHH--HhhCCCCe
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL--QNINPDVT   87 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l--~~~np~v~   87 (292)
                      +..+|.|+|+|+.|+++|..|+..|.      .++.+...|..             --++.-++.+.+.=  .+.-|+++
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~-------------~~~~~~~~~in~~~~N~~ylp~~~   76 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI-------------VEGEKLSDIINTKHENVKYLPGIK   76 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc-------------ccchHHHHHHHhcCCCcccCCCCc
Confidence            45689999999999999999999874      35566543321             01111122222110  01123333


Q ss_pred             EEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302          88 IEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC  135 (292)
Q Consensus        88 v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~  135 (292)
                      +   +..+....++.+.+       .+.|+||.++.+...+..+.+..
T Consensus        77 L---p~ni~~tsdl~eav-------~~aDiIvlAVPsq~l~~vl~~l~  114 (365)
T PTZ00345         77 L---PDNIVAVSDLKEAV-------EDADLLIFVIPHQFLESVLSQIK  114 (365)
T ss_pred             C---CCceEEecCHHHHH-------hcCCEEEEEcChHHHHHHHHHhc
Confidence            2   11221113343433       67899999999988887777764

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.09  E-value=0.14  Score=45.63  Aligned_cols=89  Identities=15%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++++|.|+ |++|..+++.|+..|.. +.++|.+                  ..+.+.+.+.+++.  ..++..+.
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~------------------~~~~~~~~~~~~~~--~~~~~~~~   65 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDIN------------------QELVDKGLAAYREL--GIEAHGYV   65 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC------------------HHHHHHHHHHHHhc--CCceEEEE
Confidence            456788999976 69999999999999975 6665532                  12444444455443  23566677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...+.+....+.+.|+||.+..
T Consensus        66 ~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag   96 (265)
T PRK07097         66 CDVTDEDGVQAMVSQIEKEVGVIDILVNNAG   96 (265)
T ss_pred             cCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            7777766666555433223356899987763

>PRK08324 short chain dehydrogenase; Validated

Probab=95.08  E-value=0.097  Score=53.64  Aligned_cols=86  Identities=29%  Similarity=0.302  Sum_probs=56.7

Q ss_pred             hcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .+++|+|.| .|++|..+++.|+..|. ++.++|.+.                  .+.+.+.+.+...   .++..+..+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~------------------~~~~~~~~~l~~~---~~v~~v~~D  478 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDE------------------EAAEAAAAELGGP---DRALGVACD  478 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCH------------------HHHHHHHHHHhcc---CcEEEEEec
Confidence            457899999 59999999999999997 788887532                  1333333333322   345566666


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+...++.....+.+.|+||.+..
T Consensus       479 vtd~~~v~~~~~~~~~~~g~iDvvI~~AG  507 (681)
T PRK08324        479 VTDEAAVQAAFEEAALAFGGVDIVVSNAG  507 (681)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            76656665554432222357899998875

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.098  Score=45.22  Aligned_cols=36  Identities=28%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ++++++|+|.|. |++|..+++.|+..|.. +.++|.+
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~   40 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRG   40 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCC
Confidence            356789999986 99999999999999975 7887754

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.06  E-value=0.039  Score=50.73  Aligned_cols=31  Identities=29%  Similarity=0.631  Sum_probs=28.4

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      |.|+|+|.+|+.+|..|+..|..+++|+|-+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            6899999999999999999886699999976

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.05  E-value=0.17  Score=47.00  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|.|+|++|...++.+...|+.++.++|..
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~  203 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS  203 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC
Confidence            56799999999999999999989999888887743

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=95.03  E-value=0.34  Score=43.45  Aligned_cols=93  Identities=16%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ..+|+|+|--+=|..++..|...|+.-+.=+-.                +.|.+           ..+  .+..+..++.
T Consensus         2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat----------------~~g~~-----------~~~--~~~v~~G~l~   52 (248)
T PRK08057          2 MPRILLLGGTSEARALARALAAAGVDIVLSLAG----------------RTGGP-----------ADL--PGPVRVGGFG   52 (248)
T ss_pred             CceEEEEechHHHHHHHHHHHhCCCeEEEEEcc----------------CCCCc-----------ccC--CceEEECCCC
Confidence            357999999999999999999888754432221                12220           011  2344556663


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHH--HHHHHHHHHhCCcee
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEAR--MTINMACNQLGQTWF  143 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r--~~in~~~~~~~~p~i  143 (292)
                      +.+.+.+++.+     .++++|||+|..++..  ..+.++|.+.++|++
T Consensus        53 ~~~~l~~~l~~-----~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyi   96 (248)
T PRK08057         53 GAEGLAAYLRE-----EGIDLVIDATHPYAAQISANAAAACRALGIPYL   96 (248)
T ss_pred             CHHHHHHHHHH-----CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEE
Confidence            34788888865     6899999999999755  678899999999996

>PRK08374 homoserine dehydrogenase; Provisional

Probab=95.03  E-value=0.2  Score=46.89  Aligned_cols=21  Identities=38%  Similarity=0.681  Sum_probs=19.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHH
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTR   38 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~   38 (292)
                      .+|+|+|+|.+|+.+++.|..
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~   23 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAE   23 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHH
Confidence            489999999999999999886

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.02  E-value=0.07  Score=49.62  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .||+|||+|.+|+.+|..|++.|. +++++|.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            479999999999999999999995 68888864

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.99  E-value=0.25  Score=44.77  Aligned_cols=25  Identities=12%  Similarity=0.278  Sum_probs=22.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI   41 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv   41 (292)
                      ..+|.+||+|.+|..++..|...|+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~   27 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANV   27 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC
Confidence            4589999999999999999999983

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=94.98  E-value=0.026  Score=50.63  Aligned_cols=106  Identities=10%  Similarity=0.148  Sum_probs=63.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRC----GI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~----Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      +|++.||+++|+|+.|..++++|..+    |+      ++|.++|.+=+=..       +..|+-..|    +...+..+
T Consensus        22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~-------~r~~l~~~~----~~~a~~~~   90 (255)
T PF03949_consen   22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTD-------DREDLNPHK----KPFARKTN   90 (255)
T ss_dssp             -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBT-------TTSSHSHHH----HHHHBSSS
T ss_pred             CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEec-------cCccCChhh----hhhhccCc
Confidence            79999999999999999999999999    99      89999997632111       112222222    23333333


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      +.-..          .++.+.++.     -++|++|-++.  ..-++.+|...+.....|.|+.
T Consensus        91 ~~~~~----------~~L~eav~~-----~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~  139 (255)
T PF03949_consen   91 PEKDW----------GSLLEAVKG-----AKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFP  139 (255)
T ss_dssp             TTT------------SSHHHHHHC-----H--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred             ccccc----------cCHHHHHHh-----cCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEE
Confidence            32211          244455532     24588888764  2335667777777677787764

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.97  E-value=0.15  Score=44.12  Aligned_cols=89  Identities=16%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++.++|+|+|+ |++|..+++.|+..|..-+.++..+.                  ...+...+.+....+  +++.+..
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~   63 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE------------------EAAEELVEAVEALGR--RAQAVQA   63 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH------------------HHHHHHHHHHHhcCC--ceEEEEC
Confidence            34678999975 99999999999999885333222211                  122333344444433  3555666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|+||.+..
T Consensus        64 D~~~~~~v~~~~~~~~~~~~~id~vi~~ag   93 (249)
T PRK12825         64 DVTDKAALEAAVAAAVERFGRIDILVNNAG   93 (249)
T ss_pred             CcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            776656665554332222357899987763

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.96  E-value=0.052  Score=50.59  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=29.3

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGI-G-----KLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gv-g-----~i~lvD~   49 (292)
                      -.||.|+|+ |.+|+.+|..|+..|+ +     +|.|+|-
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            358999999 9999999999998887 5     6999985

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.93  E-value=0.16  Score=46.17  Aligned_cols=90  Identities=10%  Similarity=0.180  Sum_probs=55.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|..+++.|++.|. ++++++.+.-                 ...+...+.+...  ..++..+.
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~-----------------~~~~~~~~~~~~~--~~~~~~~~  102 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEH-----------------EDANETKQRVEKE--GVKCLLIP  102 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcc-----------------hHHHHHHHHHHhc--CCeEEEEE
Confidence            567789999985 8899999999999996 4667654210                 0122223333322  34566667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.+++....+.+.|+||.+..
T Consensus       103 ~Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag  133 (290)
T PRK06701        103 GDVSDEAFCKDAVEETVRELGRLDILVNNAA  133 (290)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            7777666666554432222356888886653

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=94.93  E-value=0.2  Score=46.18  Aligned_cols=87  Identities=24%  Similarity=0.294  Sum_probs=53.3

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .+++++|.|+ +|+|.++++.|++.|..++.+++.+.                  .|.+.+++.+..  +..++..+..+
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~------------------~~~~~~~~~l~~--~~~~~~~~~~D   61 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDF------------------LKAEQAAKSLGM--PKDSYTIMHLD   61 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCH------------------HHHHHHHHHhcC--CCCeEEEEEcC
Confidence            4668888887 58999999999999955777765431                  133333344432  23455566667


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +++.+.+...++.....+.+.|++|...
T Consensus        62 l~~~~~v~~~~~~~~~~~~~iD~lI~nA   89 (314)
T TIGR01289        62 LGSLDSVRQFVQQFRESGRPLDALVCNA   89 (314)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            7665555544433222235678777664

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07856 short chain dehydrogenase; Provisional

Probab=94.91  E-value=0.095  Score=46.20  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=29.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~   39 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRR   39 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788999976 6899999999999997 67777754

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.91  E-value=0.11  Score=48.33  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|||+|.+|+.+|..++.+|.. ++++|.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence            5799999999999999999999954 78888654

>PRK07985 oxidoreductase; Provisional

Probab=94.91  E-value=0.16  Score=46.25  Aligned_cols=90  Identities=11%  Similarity=0.138  Sum_probs=55.4

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++++|.|+ |++|.++++.|++.|.. +.+++.+.-                ..+.+.+.+.+.+.  ..++..+.
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~-Vi~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~~~  106 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAISYLPVE----------------EEDAQDVKKIIEEC--GRKAVLLP  106 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEecCCcc----------------hhhHHHHHHHHHHc--CCeEEEEE
Confidence            367789999986 89999999999999964 555542210                01233344444333  23455666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|...
T Consensus       107 ~Dl~~~~~~~~~~~~~~~~~g~id~lv~~A  136 (294)
T PRK07985        107 GDLSDEKFARSLVHEAHKALGGLDIMALVA  136 (294)
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            677766666555443322345778888664

>PRK09072 short chain dehydrogenase; Provisional

Probab=94.91  E-value=0.21  Score=44.32  Aligned_cols=86  Identities=21%  Similarity=0.303  Sum_probs=54.8

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.| .|++|..+++.|++.|. ++++++.+.                  .+.+.+.+.+ +.  ..++..+..
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~-~~--~~~~~~~~~   60 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNA------------------EKLEALAARL-PY--PGRHRWVVA   60 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHH-hc--CCceEEEEc
Confidence            4678899998 58999999999999996 588877432                  1222333333 22  235666666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.++++.... +...|+||.+..
T Consensus        61 D~~d~~~~~~~~~~~~~-~~~id~lv~~ag   89 (263)
T PRK09072         61 DLTSEAGREAVLARARE-MGGINVLINNAG   89 (263)
T ss_pred             cCCCHHHHHHHHHHHHh-cCCCCEEEECCC
Confidence            77665655544432211 357899888754

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.89  E-value=0.13  Score=48.44  Aligned_cols=33  Identities=30%  Similarity=0.568  Sum_probs=28.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|||+|-+|..++..|.+.|. .+.++|.|.
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~   33 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDP   33 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCC
Confidence            479999999999999999999997 566777554

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=94.88  E-value=0.18  Score=44.29  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=30.5

Q ss_pred             HHHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          13 EHIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        13 ~~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~   45 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT   45 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence            356788999985 56799999999999987 77887764

>PRK09135 pteridine reductase; Provisional

Probab=94.88  E-value=0.19  Score=43.68  Aligned_cols=89  Identities=12%  Similarity=0.199  Sum_probs=55.2

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +.++|+|.|+ |++|..+++.|++.|. ++.++|...                 ..+.+.+.+.+.+..+. .+..+..+
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~-----------------~~~~~~~~~~~~~~~~~-~~~~~~~D   65 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRS-----------------AAEADALAAELNALRPG-SAAALQAD   65 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCC-----------------HHHHHHHHHHHHhhcCC-ceEEEEcC
Confidence            4578999975 8999999999999997 456655321                 12333444455554432 35556666


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+...+......+.+.|+||.+..
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~d~vi~~ag   94 (249)
T PRK09135         66 LLDPDALPELVAACVAAFGRLDALVNNAS   94 (249)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66656665554332222346899887764

>PRK08862 short chain dehydrogenase; Provisional

Probab=94.88  E-value=0.13  Score=45.01  Aligned_cols=87  Identities=15%  Similarity=0.154  Sum_probs=55.7

Q ss_pred             HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++++|.|++ |+|.++++.|+..|.. +.+++.+                  ..+.+.+.+.+++..  .++..+..
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r~------------------~~~l~~~~~~i~~~~--~~~~~~~~   61 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQD------------------QSALKDTYEQCSALT--DNVYSFQL   61 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCC------------------HHHHHHHHHHHHhcC--CCeEEEEc
Confidence            567889999765 6999999999999974 6665532                  124444455555543  33455555


Q ss_pred             cccchhhHHHHHhcCCCCCC-CcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEG-PVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~-~~DlVv~a~  122 (292)
                      ++++.+.+..+++.....+. ..|++|.+.
T Consensus        62 D~~~~~~~~~~~~~~~~~~g~~iD~li~na   91 (227)
T PRK08862         62 KDFSQESIRHLFDAIEQQFNRAPDVLVNNW   91 (227)
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            66665666655543332334 688888775

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.87  E-value=0.36  Score=42.13  Aligned_cols=30  Identities=30%  Similarity=0.451  Sum_probs=26.0

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ||.||| +|.+|+.++..|++.| .+++++|.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r   32 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSR   32 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEc
Confidence            699997 8999999999999998 56777664

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.86  E-value=0.044  Score=46.43  Aligned_cols=38  Identities=29%  Similarity=0.512  Sum_probs=32.6

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~   69 (178)
T PF02826_consen   32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP   69 (178)
T ss_dssp             S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred             cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence            37889999999999999999999999998 788888654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.85  E-value=0.031  Score=47.84  Aligned_cols=41  Identities=29%  Similarity=0.466  Sum_probs=31.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR   59 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R   59 (292)
                      +||.|+|+|=+|..+|..||..| -+++-+|-|.-....+++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D~~~~~v~~l~~   41 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVDIDEEKVEALNN   41 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTT-SEEEEE-S-HHHHHHHHT
T ss_pred             CEEEEECCCcchHHHHHHHHhCC-CEEEEEeCChHHHHHHhh
Confidence            48999999999999999999999 457788888776666776

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.84  E-value=0.092  Score=45.72  Aligned_cols=85  Identities=21%  Similarity=0.292  Sum_probs=51.3

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.| .|++|..+++.|+..|. .+.+.+.+.                  .|.+.+.+   +..  .++..+..
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~------------------~~~~~~~~---~~~--~~~~~~~~   59 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRV------------------EKLEALAA---ELG--ERVKIFPA   59 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHH---HhC--CceEEEEc
Confidence            5678999998 58999999999999986 555544221                  12222211   221  24555566


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.+.+....+.+.|+||.+..
T Consensus        60 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag   89 (245)
T PRK12936         60 NLSDRDEVKALGQKAEADLEGVDILVNNAG   89 (245)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666656655544322222357898887764

>PRK08643 acetoin reductase; Validated

Probab=94.83  E-value=0.23  Score=43.74  Aligned_cols=85  Identities=22%  Similarity=0.226  Sum_probs=54.2

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++++|.| .|++|..+++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..  .++..+..++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~Dl   60 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNE------------------ETAQAAADKLSKDG--GKAIAVKADV   60 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeEEEEECCC
Confidence            45677775 67999999999999996 577776321                  23334444444433  3455667777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+...++.....+.+.|+||.+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~id~vi~~a   87 (256)
T PRK08643         61 SDRDQVFAAVRQVVDTFGDLNVVVNNA   87 (256)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            776666655443222235688888776

>PRK11579 putative oxidoreductase; Provisional

Probab=94.82  E-value=0.25  Score=46.18  Aligned_cols=86  Identities=20%  Similarity=0.231  Sum_probs=48.5

Q ss_pred             CcEEEEcCChHHH-HHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVGVGGVGS-VTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG~GglGs-~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      -||.|||+|.+|. ..+..+... ++.-..+.|.|.                  .|+       .+..+.+++  +    
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~------------------~~~-------~~~~~~~~~--~----   53 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDA------------------TKV-------KADWPTVTV--V----   53 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCH------------------HHH-------HhhCCCCce--e----
Confidence            4899999999997 456666654 444445566442                  111       112222221  1    


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                         .+++++++.     .+.|+|+.|+.+.. ...+...|.+.|++++
T Consensus        54 ---~~~~ell~~-----~~vD~V~I~tp~~~-H~~~~~~al~aGkhVl   92 (346)
T PRK11579         54 ---SEPQHLFND-----PNIDLIVIPTPNDT-HFPLAKAALEAGKHVV   92 (346)
T ss_pred             ---CCHHHHhcC-----CCCCEEEEcCCcHH-HHHHHHHHHHCCCeEE
Confidence               355566532     46888888887643 4444455556665443

>TIGR02415 23BDH acetoin reductases

Probab=94.82  E-value=0.23  Score=43.56  Aligned_cols=85  Identities=15%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++++|.| .|++|..+++.|+..|. ++.+++.+.                  .+.+.+.+.+...  ..++..+..+++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~l~~~--~~~~~~~~~Dl~   59 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNE------------------ETAKETAKEINQA--GGKAVAYKLDVS   59 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEEcCCC
Confidence            4688887 58999999999999997 577776431                  1233333444432  345666677777


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+.+.++.....+.+.|+||.+..
T Consensus        60 ~~~~i~~~~~~~~~~~~~id~vi~~ag   86 (254)
T TIGR02415        60 DKDQVFSAIDQAAEKFGGFDVMVNNAG   86 (254)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666665554332222356788888763

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=94.77  E-value=0.46  Score=42.64  Aligned_cols=95  Identities=21%  Similarity=0.301  Sum_probs=66.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +||+|+|--+=|..++..|...|.  +.+ .-  +                   ++...+.+....+.+  ......+.+
T Consensus         1 m~ILvlgGTtE~r~la~~L~~~g~--v~~-sv--~-------------------t~~g~~~~~~~~~~~--~v~~G~lg~   54 (249)
T PF02571_consen    1 MKILVLGGTTEGRKLAERLAEAGY--VIV-SV--A-------------------TSYGGELLKPELPGL--EVRVGRLGD   54 (249)
T ss_pred             CEEEEEechHHHHHHHHHHHhcCC--EEE-EE--E-------------------hhhhHhhhccccCCc--eEEECCCCC
Confidence            589999999999999999999997  222 10  0                   001111111222333  345566633


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHH--HHHHHHHHHhCCcee
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEAR--MTINMACNQLGQTWF  143 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r--~~in~~~~~~~~p~i  143 (292)
                      .+.+.+++.+     .++++|||+|..++..  ..+.++|.+.|+|++
T Consensus        55 ~~~l~~~l~~-----~~i~~vIDATHPfA~~is~na~~a~~~~~ipyl   97 (249)
T PF02571_consen   55 EEGLAEFLRE-----NGIDAVIDATHPFAAEISQNAIEACRELGIPYL   97 (249)
T ss_pred             HHHHHHHHHh-----CCCcEEEECCCchHHHHHHHHHHHHhhcCcceE
Confidence            4788888865     6899999999999865  568889999999986

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK12827 short chain dehydrogenase; Provisional

Probab=94.77  E-value=0.21  Score=43.52  Aligned_cols=92  Identities=18%  Similarity=0.278  Sum_probs=56.2

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.| .|++|..+++.|+..|.. +++++...      .        -...+...+.+.+.....  ++..+..
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~~~------~--------~~~~~~~~~~~~~~~~~~--~~~~~~~   66 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDIHP------M--------RGRAEADAVAAGIEAAGG--KALGLAF   66 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcCcc------c--------ccHHHHHHHHHHHHhcCC--cEEEEEc
Confidence            5678899997 589999999999999974 66666321      0        112344445555554433  4556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.......++|.||.+..
T Consensus        67 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag   96 (249)
T PRK12827         67 DVRDFAATRAALDAGVEEFGRLDILVNNAG   96 (249)
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            666655555444321111246888887753

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.76  E-value=0.11  Score=50.76  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=33.8

Q ss_pred             HHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          10 ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++-..+..++|+|+|+|+.|-.++..|.+.|. .+++.|.
T Consensus         8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~   46 (473)
T PRK00141          8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD   46 (473)
T ss_pred             hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            34456677899999999999999999999998 8888884

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.76  E-value=0.2  Score=44.23  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=56.0

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|.+++|+|.| .|++|..+++.|+..|.. +.++|.+                  ..+.+.+.+.+++.  ..++..+.
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r~------------------~~~~~~~~~~l~~~--~~~~~~~~   66 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDIN------------------ADAANHVVDEIQQL--GGQAFACR   66 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCC------------------HHHHHHHHHHHHhc--CCcEEEEE
Confidence            46788999996 578999999999999974 5555532                  12333444444443  23455566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.+......+.+.|+||.+..
T Consensus        67 ~D~~~~~~i~~~~~~~~~~~~~~d~li~~ag   97 (255)
T PRK06113         67 CDITSEQELSALADFALSKLGKVDILVNNAG   97 (255)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6777656665544332223357888888753

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.75  E-value=0.19  Score=43.51  Aligned_cols=87  Identities=22%  Similarity=0.313  Sum_probs=53.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +.+++|+|.|+ |++|..+++.|+..|.. +++++.+.                  .+.+.+.+.+....  .++.....
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   61 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNE------------------EAAEALAAELRAAG--GEARVLVF   61 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCh------------------hHHHHHHHHHHhcC--CceEEEEc
Confidence            34578999986 89999999999999986 77776542                  12222333333332  34555556


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+.+...+......+.+.|.||.+.
T Consensus        62 D~~~~~~~~~~~~~~~~~~~~id~vi~~a   90 (246)
T PRK05653         62 DVSDEAAVRALIEAAVEAFGALDILVNNA   90 (246)
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            66655555544432111235678888876

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.75  E-value=0.13  Score=43.09  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      .|..++++|+|-|-+|.-+|+.|...| .++++.|-|.+
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DPi   57 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDPI   57 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECChH
Confidence            678899999999999999999999999 56899998875

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=94.75  E-value=0.13  Score=45.04  Aligned_cols=36  Identities=33%  Similarity=0.408  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +++++++|.|+ |++|..+++.|++.|. +++++|.+.
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~   42 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF   42 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence            67889999987 6799999999999996 567766543

>PRK07102 short chain dehydrogenase; Provisional

Probab=94.74  E-value=0.31  Score=42.55  Aligned_cols=82  Identities=20%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.| .|++|..+++.|++.|. +++++|.+.                  .+.+...+.+... +..+++.+..+++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~-~~~~~~~~~~Dl~   61 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDV------------------ERLERLADDLRAR-GAVAVSTHELDIL   61 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCH------------------HHHHHHHHHHHHh-cCCeEEEEecCCC
Confidence            5788887 59999999999999996 577777542                  2333444444432 3456777777777


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +.+.+.++++...   ..+|+||.+.
T Consensus        62 ~~~~~~~~~~~~~---~~~d~vv~~a   84 (243)
T PRK07102         62 DTASHAAFLDSLP---ALPDIVLIAV   84 (243)
T ss_pred             ChHHHHHHHHHHh---hcCCEEEECC
Confidence            7666665554321   3468888654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.73  E-value=0.15  Score=51.09  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+++|+|||+|..|-..|..|++.|. +++++|...
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~  170 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP  170 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            46899999999999999999999998 599998543

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.73  E-value=0.053  Score=49.90  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|+|||.| -+|..++.+|.+.|. .+++.+.
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~  191 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHS  191 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECC
Confidence            7899999999996 999999999999985 6777653

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.73  E-value=0.17  Score=46.15  Aligned_cols=30  Identities=27%  Similarity=0.420  Sum_probs=26.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ||+|+|+|++|+.++..|++.|. ++++++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            79999999999999999999985 5888775

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.71  E-value=0.38  Score=45.06  Aligned_cols=31  Identities=29%  Similarity=0.494  Sum_probs=27.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      .++|+|+|+||+|....+....+| .+++.+|
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~  197 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT  197 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe
Confidence            678999999999999999998899 7788776

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.69  E-value=0.12  Score=42.04  Aligned_cols=31  Identities=26%  Similarity=0.575  Sum_probs=26.1

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      |+|+|+|++|+.+|..|.+.|.. +++++...
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc
Confidence            78999999999999999997754 88877433

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.69  E-value=0.46  Score=43.63  Aligned_cols=93  Identities=12%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +|+|.|+ |-+|+.++..|...|. +++.++.+.                  .+.    ..+..  +.  ++.+..++++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~------------------~~~----~~l~~--~~--v~~v~~Dl~d   54 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL------------------RKA----SFLKE--WG--AELVYGDLSL   54 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh------------------HHh----hhHhh--cC--CEEEECCCCC
Confidence            7999995 9999999999999986 466655321                  011    11111  12  3445555655


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCH------------HHHHHHHHHHHHhCC-ceeec
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNF------------EARMTINMACNQLGQ-TWFES  145 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~------------~~r~~in~~~~~~~~-p~i~~  145 (292)
                      .+.+...+       .++|+||.+....            .....+-++|.+.++ .+|+.
T Consensus        55 ~~~l~~al-------~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~  108 (317)
T CHL00194         55 PETLPPSF-------KGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFF  108 (317)
T ss_pred             HHHHHHHH-------CCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEe
Confidence            55555554       5788888764311            112345567777776 34443

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=94.65  E-value=0.17  Score=45.00  Aligned_cols=90  Identities=13%  Similarity=0.127  Sum_probs=53.2

Q ss_pred             HhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      +++++++|.|+   +|+|.++|+.|++.|.. +.+.+.+.              +.+  +.+...+.+.+...  ++..+
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~~-v~~~~~~~--------------~~~--~~~~~~~~~~~~~~--~~~~~   64 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAE-LGITYLPD--------------EKG--RFEKKVRELTEPLN--PSLFL   64 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEEecCc--------------ccc--hHHHHHHHHHhccC--cceEe
Confidence            56788999997   49999999999999975 55544221              111  11112222322111  23455


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+.++++.....+.+.|++|.+..
T Consensus        65 ~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag   96 (258)
T PRK07370         65 PCDVQDDAQIEETFETIKQKWGKLDILVHCLA   96 (258)
T ss_pred             ecCcCCHHHHHHHHHHHHHHcCCCCEEEEccc
Confidence            66676666666555443333467888887764

>PRK05650 short chain dehydrogenase; Provisional

Probab=94.59  E-value=0.25  Score=44.02  Aligned_cols=85  Identities=20%  Similarity=0.208  Sum_probs=52.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+ |++|..+++.|+..|.. ++++|.+.                  .+.+.+.+.+++...  ++.....+++
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~-V~~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~D~~   59 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWR-LALADVNE------------------EGGEETLKLLREAGG--DGFYQRCDVR   59 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHhcCC--ceEEEEccCC
Confidence            36888875 89999999999999974 66665432                  234444445554433  3444555666


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+.+.++.-...+.++|+||.+..
T Consensus        60 ~~~~~~~~~~~i~~~~~~id~lI~~ag   86 (270)
T PRK05650         60 DYSQLTALAQACEEKWGGIDVIVNNAG   86 (270)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            555555544322212346888887753

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.59  E-value=0.17  Score=47.01  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .||.|+|+|.+|+.++..|++.|. +++++|.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~   36 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR   36 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            479999999999999999999985 58888864

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=94.59  E-value=0.21  Score=45.59  Aligned_cols=29  Identities=31%  Similarity=0.504  Sum_probs=25.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ||+|.|+ |-+|+.+++.|...|  +++.+|.
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~   31 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG--NLIALDV   31 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC--CEEEecc
Confidence            7999997 999999999999888  5777764

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.58  E-value=0.048  Score=50.48  Aligned_cols=33  Identities=30%  Similarity=0.514  Sum_probs=29.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      .||.|+|+ |.+|+.++..|+..|+ ++++++|.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~   35 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP   35 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence            47999998 9999999999999997 479999974

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.57  E-value=0.25  Score=46.11  Aligned_cols=99  Identities=27%  Similarity=0.336  Sum_probs=60.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ...+|+|+|+|++|-+..+.+..+|.++|.-||-..                  .|-+.+++     . ... +.++.+ 
T Consensus       185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~------------------~Kl~~A~~-----f-GAT-~~vn~~-  238 (366)
T COG1062         185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP------------------EKLELAKK-----F-GAT-HFVNPK-  238 (366)
T ss_pred             CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH------------------HHHHHHHh-----c-CCc-eeecch-
Confidence            356899999999999999999999999999999543                  12222222     1 111 111110 


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                       +..++.+.+.+..  -.+.|.+|+|+.+......--+.+.+-|...+
T Consensus       239 -~~~~vv~~i~~~T--~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~  283 (366)
T COG1062         239 -EVDDVVEAIVELT--DGGADYAFECVGNVEVMRQALEATHRGGTSVI  283 (366)
T ss_pred             -hhhhHHHHHHHhc--CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEE
Confidence             0001111111111  13899999999999876666667776555433

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=94.56  E-value=0.24  Score=43.60  Aligned_cols=80  Identities=11%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +|+|.|+ |++|..+++.|+..|. ++.++|.+.                  .|.+.+.+.   +.+  +++.+..++++
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~---~~~--~~~~~~~Dl~~   57 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQ------------------ERLQELKDE---LGD--NLYIAQLDVRN   57 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHH---hcc--ceEEEEecCCC
Confidence            6889985 8899999999999996 577776421                  122222222   222  35555666666


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .+.+.+.++.....+.+.|+||.+.
T Consensus        58 ~~~i~~~~~~~~~~~~~id~vi~~a   82 (248)
T PRK10538         58 RAAIEEMLASLPAEWRNIDVLVNNA   82 (248)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECC
Confidence            5665554433222235789988765

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.54  E-value=0.34  Score=45.22  Aligned_cols=111  Identities=14%  Similarity=0.073  Sum_probs=63.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +++.++|+|.|+ |-+|+++++.|...|. +++.+|...-...+   .      ..    . ....+.. ...-+++.+.
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~---~------~~----~-~~~~~~~-~~~~~~~~~~   75 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFSTGYQH---N------LD----D-VRTSVSE-EQWSRFIFIQ   75 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCcchh---h------hh----h-hhhcccc-ccCCceEEEE
Confidence            567799999985 9999999999999885 67777753211000   0      00    0 0000000 0011345556


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCC---------H--------HHHHHHHHHHHHhCC-ceeecCc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDN---------F--------EARMTINMACNQLGQ-TWFESGV  147 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~---------~--------~~r~~in~~~~~~~~-p~i~~~~  147 (292)
                      .++.+.+.+..++       .++|+||-+...         +        .....+-++|++.++ .+++.+.
T Consensus        76 ~Di~d~~~l~~~~-------~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS  141 (348)
T PRK15181         76 GDIRKFTDCQKAC-------KNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS  141 (348)
T ss_pred             ccCCCHHHHHHHh-------hCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence            6776655666655       568888877531         1        111245568888876 5666543

>PRK05599 hypothetical protein; Provisional

Probab=94.54  E-value=0.25  Score=43.58  Aligned_cols=84  Identities=15%  Similarity=0.270  Sum_probs=54.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .|+|.|+ +|+|.++++.|++ | .++.+++.+.                  .+.+.+++.+++.++ ..+..+..++++
T Consensus         2 ~vlItGas~GIG~aia~~l~~-g-~~Vil~~r~~------------------~~~~~~~~~l~~~~~-~~~~~~~~Dv~d   60 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLCH-G-EDVVLAARRP------------------EAAQGLASDLRQRGA-TSVHVLSFDAQD   60 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHhC-C-CEEEEEeCCH------------------HHHHHHHHHHHhccC-CceEEEEcccCC
Confidence            5777765 6899999999995 7 5677766321                  245566666766543 234556667776


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+.+.+.++.....+.+.|++|.+..
T Consensus        61 ~~~v~~~~~~~~~~~g~id~lv~nag   86 (246)
T PRK05599         61 LDTHRELVKQTQELAGEISLAVVAFG   86 (246)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            66666555443333467888886653

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=94.53  E-value=0.14  Score=45.09  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=25.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRC--GIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~--Gvg~i~lvD~D~   51 (292)
                      +|.|||||++|..++..+-.-  .+....+.|.+.
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~   36 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDE   36 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCH
Confidence            689999999999999877542  366666666554

>KOG1200|consensus

Probab=94.52  E-value=0.26  Score=42.59  Aligned_cols=41  Identities=24%  Similarity=0.418  Sum_probs=34.1

Q ss_pred             HHHHHHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          10 ENYEHIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+++++++..+|-|.| |+|-++++.|++.|.. +.+.|-|.
T Consensus         7 ~~~~r~~sk~~~vtGg~sGIGrAia~~la~~Gar-v~v~dl~~   48 (256)
T KOG1200|consen    7 EVVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGAR-VAVADLDS   48 (256)
T ss_pred             HHHHHHhcceeEEecCCchHHHHHHHHHHhcCcE-EEEeecch
Confidence            56889999988888765 8999999999999965 66677655

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=94.52  E-value=0.11  Score=46.12  Aligned_cols=86  Identities=19%  Similarity=0.258  Sum_probs=61.0

Q ss_pred             HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .++++-|+|-|+. |+|-++|+.|+..|. ++.+.....                  .|-+++++++.+    .++....
T Consensus         3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~------------------drL~~la~~~~~----~~~~~~~   59 (246)
T COG4221           3 TLKGKVALITGASSGIGEATARALAEAGA-KVVLAARRE------------------ERLEALADEIGA----GAALALA   59 (246)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccH------------------HHHHHHHHhhcc----CceEEEe
Confidence            3456667788875 899999999999998 566655321                  234444444433    5567777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|+-.
T Consensus        60 ~DVtD~~~~~~~i~~~~~~~g~iDiLvNNA   89 (246)
T COG4221          60 LDVTDRAAVEAAIEALPEEFGRIDILVNNA   89 (246)
T ss_pred             eccCCHHHHHHHHHHHHHhhCcccEEEecC
Confidence            888887777777776666778999999765

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.50  E-value=0.11  Score=46.66  Aligned_cols=32  Identities=34%  Similarity=0.574  Sum_probs=27.9

Q ss_pred             EEEEcC-ChHHHHHHHHHHHhC--C-CeEEEEeCCc
Q psy2302          20 VIVVGV-GGVGSVTAEMLTRCG--I-GKLILFDYDK   51 (292)
Q Consensus        20 V~vvG~-GglGs~va~~La~~G--v-g~i~lvD~D~   51 (292)
                      |.|||+ |.+|+.++..|+..|  . .++.|+|-+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~   36 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE   36 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence            689999 999999999999988  4 6899998644

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK08267 short chain dehydrogenase; Provisional

Probab=94.47  E-value=0.24  Score=43.76  Aligned_cols=83  Identities=17%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+ |++|..+++.|++.|. ++.++|.+.                  .+.+.+++.+.    ..++..+..+++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~----~~~~~~~~~D~~   58 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINE------------------AGLAALAAELG----AGNAWTGALDVT   58 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHhc----CCceEEEEecCC
Confidence            46888874 8999999999999996 566665322                  12222222221    345666667777


Q ss_pred             chhhHHHHHhcCCC-CCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSL-TEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~-~~~~~DlVv~a~d  123 (292)
                      +.+.+.+.+..... ...+.|+||.+..
T Consensus        59 ~~~~v~~~~~~~~~~~~~~id~vi~~ag   86 (260)
T PRK08267         59 DRAAWDAALADFAAATGGRLDVLFNNAG   86 (260)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence            65666554432111 1356799887764

>PLN02256 arogenate dehydrogenase

Probab=94.46  E-value=0.3  Score=45.10  Aligned_cols=36  Identities=22%  Similarity=0.394  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +-+..+|.|||+|.+|..++..|.+.|. +++.+|.+
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~   68 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRS   68 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECc
Confidence            3366799999999999999999999884 67787754

>PLN02780 ketoreductase/ oxidoreductase

Probab=94.45  E-value=0.46  Score=44.02  Aligned_cols=62  Identities=21%  Similarity=0.282  Sum_probs=45.6

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .++.++|.|+ ||+|.++|+.|++.|. ++.++|.+.                  .|.+.+++.+++..+..++..+..+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~------------------~~l~~~~~~l~~~~~~~~~~~~~~D  112 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP------------------DKLKDVSDSIQSKYSKTQIKTVVVD  112 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH------------------HHHHHHHHHHHHHCCCcEEEEEEEE
Confidence            4678888886 7899999999999997 588877432                  2555666777776666666666655


Q ss_pred             cc
Q psy2302          95 IT   96 (292)
Q Consensus        95 i~   96 (292)
                      ++
T Consensus       113 l~  114 (320)
T PLN02780        113 FS  114 (320)
T ss_pred             CC
Confidence            54

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=94.43  E-value=0.13  Score=49.09  Aligned_cols=56  Identities=16%  Similarity=0.398  Sum_probs=44.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCCCCCcc-CcCC--CCChHHHHHHH
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDKVELANMNRLFF-QPDQ--CGLSKVEAARI   77 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl~R~~~-~~~d--iG~~Ka~a~~~   77 (292)
                      +|++.||++.|+|+-|..++..|...|+.  +|.++|.-=+        ++ +.+|  .++.|.+.+.+
T Consensus       196 ~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~--------l~~~r~~~~~~~~k~~~a~~  256 (432)
T COG0281         196 KLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL--------LYDGREDLTMNQKKYAKAIE  256 (432)
T ss_pred             CccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc--------ccCCCcccccchHHHHHHHh
Confidence            88999999999999999999999999998  9999995422        23 2233  56777766654

>PRK10537 voltage-gated potassium channel; Provisional

Probab=94.39  E-value=0.29  Score=46.93  Aligned_cols=37  Identities=19%  Similarity=0.084  Sum_probs=31.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVE   53 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~   53 (292)
                      ++.||+|+|.|.+|..+++.|...|. .++++|.|.++
T Consensus       239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~  275 (393)
T PRK10537        239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE  275 (393)
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh
Confidence            46789999999999999999998886 68888988654

>PRK14030 glutamate dehydrogenase; Provisional

Probab=94.39  E-value=0.32  Score=47.25  Aligned_cols=37  Identities=27%  Similarity=0.269  Sum_probs=33.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|+.+||+|-|.|.+|+++|+.|...|..-+.+-|.+
T Consensus       225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~  261 (445)
T PRK14030        225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD  261 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            5889999999999999999999999998888876643

>PRK14982 acyl-ACP reductase; Provisional

Probab=94.38  E-value=0.038  Score=51.79  Aligned_cols=37  Identities=32%  Similarity=0.569  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTR-CGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~-~Gvg~i~lvD~D   50 (292)
                      .|++++|+|+|+ |.+|+.+++.|+. .|+.++++++.+
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~  190 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ  190 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence            467899999999 8999999999985 589999997743

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.37  E-value=0.18  Score=45.04  Aligned_cols=87  Identities=11%  Similarity=0.095  Sum_probs=51.8

Q ss_pred             HHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      ++++++|+|.|+   +|+|.++|+.|++.|.. +.+++.+.       |        ...+.+.+.+   +. +..  ..
T Consensus         3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~-v~~~~~~~-------~--------~~~~~~~~~~---~~-~~~--~~   60 (260)
T PRK06997          3 FLAGKRILITGLLSNRSIAYGIAKACKREGAE-LAFTYVGD-------R--------FKDRITEFAA---EF-GSD--LV   60 (260)
T ss_pred             ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCe-EEEEccch-------H--------HHHHHHHHHH---hc-CCc--ce
Confidence            467889999994   69999999999999964 65554210       0        0112221211   11 221  23


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +..++++.+.+...++.....+.+.|++|.+.
T Consensus        61 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA   92 (260)
T PRK06997         61 FPCDVASDEQIDALFASLGQHWDGLDGLVHSI   92 (260)
T ss_pred             eeccCCCHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence            45566666666655544333346789888765

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.36  E-value=0.12  Score=45.55  Aligned_cols=83  Identities=14%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++++|.|+ |++|..+++.|+..|.. +.+++...                 ..+.    +.+.+.    .+..+.
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~-v~~~~~~~-----------------~~~~----~~l~~~----~~~~~~   57 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAK-VAVLYNSA-----------------ENEA----KELREK----GVFTIK   57 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCc-----------------HHHH----HHHHhC----CCeEEE
Confidence            356789999985 89999999999999964 55544221                 0111    122221    244556


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|+||.+.
T Consensus        58 ~Dl~~~~~~~~~~~~~~~~~~~id~li~~a   87 (255)
T PRK06463         58 CDVGNRDQVKKSKEVVEKEFGRVDVLVNNA   87 (255)
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666665666555443222335788888775

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.35  E-value=0.23  Score=46.25  Aligned_cols=82  Identities=20%  Similarity=0.134  Sum_probs=49.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |.+|+++++.|++.|. +++++|.+.-.               ..+.   .+.+. ..  -+++.+..
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~~~---~~~~~-~~--~~~~~~~~   59 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPT---------------SPNL---FELLN-LA--KKIEDHFG   59 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCcc---------------chhH---HHHHh-hc--CCceEEEc
Confidence            45789999996 8899999999999985 46666644211               0010   11111 11  13444556


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.     .++|+||.+..
T Consensus        60 Dl~~~~~~~~~~~~-----~~~d~vih~A~   84 (349)
T TIGR02622        60 DIRDAAKLRKAIAE-----FKPEIVFHLAA   84 (349)
T ss_pred             cCCCHHHHHHHHhh-----cCCCEEEECCc
Confidence            66666666666542     25788887763

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=94.34  E-value=0.035  Score=49.82  Aligned_cols=106  Identities=10%  Similarity=0.086  Sum_probs=64.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCC----------eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIG----------KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg----------~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      +|++.||+++|+|+-|..++++|...++.          +|.++|..=+=..       +..+.-..|...+ ++.   +
T Consensus        22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~-------~r~~l~~~~~~~~-~~~---~   90 (254)
T cd00762          22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVK-------NRKETCPNEYHLA-RFA---N   90 (254)
T ss_pred             ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeC-------CCCccCHHHHHHH-HHc---C
Confidence            78999999999999999999999999997          9999996542111       1112222222211 111   1


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      +.-.          ..++.+.++.     -++|++|-.+.  ..-++..|...+.....|.|+.
T Consensus        91 ~~~~----------~~~L~eav~~-----~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa  139 (254)
T cd00762          91 PERE----------SGDLEDAVEA-----AKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA  139 (254)
T ss_pred             cccc----------cCCHHHHHHh-----hCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence            1100          1244444421     27888887665  2334556666666666777764

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK12743 oxidoreductase; Provisional

Probab=94.33  E-value=0.27  Score=43.42  Aligned_cols=87  Identities=14%  Similarity=0.177  Sum_probs=52.2

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.|+ |++|..+++.|+..|.. +.+++...                 ..+.+.+.+.++...  .++..+..++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~Dl   61 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITWHSD-----------------EEGAKETAEEVRSHG--VRAEIRQLDL   61 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCC-----------------hHHHHHHHHHHHhcC--CceEEEEccC
Confidence            457888875 68999999999999974 44433211                 123444445554443  3455566667


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+...+++....+.+.|+||.+..
T Consensus        62 ~~~~~~~~~~~~~~~~~~~id~li~~ag   89 (256)
T PRK12743         62 SDLPEGAQALDKLIQRLGRIDVLVNNAG   89 (256)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6655555444332223356888887653

>PLN02688 pyrroline-5-carboxylate reductase

Probab=94.33  E-value=0.37  Score=43.14  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=24.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC---CeEEEE
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI---GKLILF   47 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv---g~i~lv   47 (292)
                      ||.+||+|.+|+.++..|.+.|.   .+++++
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~   33 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA   33 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence            69999999999999999999985   255554

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.33  E-value=0.064  Score=49.02  Aligned_cols=83  Identities=23%  Similarity=0.416  Sum_probs=58.9

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChH-HHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGV-GSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQN   81 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~Ggl-Gs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~   81 (292)
                      |+..|+     .+++++|+|+|.|.+ |..++.+|.+.|. .+++.+..                               
T Consensus       149 L~~~~i-----~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~-------------------------------  191 (285)
T PRK14189        149 LESIGI-----PLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSK-------------------------------  191 (285)
T ss_pred             HHHcCC-----CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCC-------------------------------
Confidence            444555     789999999999999 9999999998874 56553210                               


Q ss_pred             hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcc
Q psy2302          82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVS  148 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~  148 (292)
                                    +  .++.+.+       +.+|+||.++..+.   .+.....+.|.-+|+.|..
T Consensus       192 --------------t--~~l~~~~-------~~ADIVV~avG~~~---~i~~~~ik~gavVIDVGin  232 (285)
T PRK14189        192 --------------T--RDLAAHT-------RQADIVVAAVGKRN---VLTADMVKPGATVIDVGMN  232 (285)
T ss_pred             --------------C--CCHHHHh-------hhCCEEEEcCCCcC---ccCHHHcCCCCEEEEcccc
Confidence                          0  2333443       68999999998654   3555666677777777664

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=94.33  E-value=0.3  Score=43.13  Aligned_cols=86  Identities=13%  Similarity=0.190  Sum_probs=54.4

Q ss_pred             HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|+. ++|.++++.|+..|.. +.++|...                   + +...+.+.+..  .++..+..
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~~~~-------------------~-~~~~~~~~~~~--~~~~~~~~   64 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGINIVE-------------------P-TETIEQVTALG--RRFLSLTA   64 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEecCcc-------------------h-HHHHHHHHhcC--CeEEEEEC
Confidence            567888888665 7999999999999964 54544210                   0 11223344332  34566677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+++..++++....+.+.|++|.+..
T Consensus        65 Dl~~~~~~~~~~~~~~~~~~~~D~li~~Ag   94 (253)
T PRK08993         65 DLRKIDGIPALLERAVAEFGHIDILVNNAG   94 (253)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            777767776665543333457899998764

>PRK06398 aldose dehydrogenase; Validated

Probab=94.32  E-value=0.18  Score=44.84  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|++++|+|.|+ |++|.++++.|++.|. ++.++|.+
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~   39 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK   39 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            467789999985 6999999999999996 67777754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.31  E-value=0.23  Score=45.06  Aligned_cols=32  Identities=19%  Similarity=0.224  Sum_probs=28.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +|.|||+|.+|..++..|.+.|. +++++|.+.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            69999999999999999999986 688888653

>PRK07069 short chain dehydrogenase; Validated

Probab=94.29  E-value=0.34  Score=42.33  Aligned_cols=87  Identities=17%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +|+|.| .|++|..+++.|++.|. ++.++|.+.                 ..+.+.+.+.+........+..+..++++
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   62 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA-KVFLTDIND-----------------AAGLDAFAAEINAAHGEGVAFAAVQDVTD   62 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCc-----------------chHHHHHHHHHHhcCCCceEEEEEeecCC
Confidence            377776 68899999999999996 677766321                 12333444444433322233334445555


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+.+...++.....+.+.|+||.+..
T Consensus        63 ~~~~~~~~~~~~~~~~~id~vi~~ag   88 (251)
T PRK07069         63 EAQWQALLAQAADAMGGLSVLVNNAG   88 (251)
T ss_pred             HHHHHHHHHHHHHHcCCccEEEECCC
Confidence            55555444322222356888887763

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=94.29  E-value=0.13  Score=47.64  Aligned_cols=36  Identities=19%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..|.+++|.|||.|.+|..+|+.+...|. ++..+|.
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~  176 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST  176 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence            36899999999999999999999988876 4666665

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.23  E-value=0.35  Score=42.44  Aligned_cols=87  Identities=18%  Similarity=0.236  Sum_probs=52.8

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++.|+|.|+ |++|+.+++.|+..|. ++.++|...                 ..+.....+.++..  ..++..+..++
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~-----------------~~~~~~~~~~~~~~--~~~~~~~~~D~   61 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGF-DLAINDRPD-----------------DEELAATQQELRAL--GVEVIFFPADV   61 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCc-----------------hhHHHHHHHHHHhc--CCceEEEEecC
Confidence            456788765 8999999999999997 566666321                 11222233334332  23566667777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+.++++.-...+...|+||.+..
T Consensus        62 ~~~~~~~~~~~~~~~~~~~id~vi~~ag   89 (256)
T PRK12745         62 ADLSAHEAMLDAAQAAWGRIDCLVNNAG   89 (256)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            7666665544332222356888888753

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.21  E-value=0.54  Score=43.30  Aligned_cols=35  Identities=31%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|.|+|++|..+++.+...|..+++.+|.+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~  197 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS  197 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            36799999999999999999999999878777643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=94.20  E-value=0.32  Score=42.51  Aligned_cols=86  Identities=15%  Similarity=0.095  Sum_probs=52.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+ |++|..+++.|++.|.. +.+++..                 ...+.+.+.+.++...  .++..+..+++
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~-v~~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~Dl~   62 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWS-VGINYAR-----------------DAAAAEETADAVRAAG--GRACVVAGDVA   62 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCC-----------------CHHHHHHHHHHHHhcC--CcEEEEEeccC
Confidence            57888876 68999999999999964 4443321                 1124444555554433  34566666776


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+.+.++.....+.+.|+||.+..
T Consensus        63 ~~~~~~~~~~~~~~~~~~id~li~~ag   89 (248)
T PRK06947         63 NEADVIAMFDAVQSAFGRLDALVNNAG   89 (248)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            656665544332222357899987663

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.20  E-value=0.35  Score=45.13  Aligned_cols=20  Identities=20%  Similarity=0.547  Sum_probs=19.0

Q ss_pred             cEEEEcCChHHHHHHHHHHH
Q psy2302          19 TVIVVGVGGVGSVTAEMLTR   38 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~   38 (292)
                      ||+|+|+|.+|+.+++.|..
T Consensus         2 rVaIiGfG~VG~~va~~L~~   21 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKS   21 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHh
Confidence            79999999999999999987

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.19  E-value=0.37  Score=42.15  Aligned_cols=84  Identities=18%  Similarity=0.267  Sum_probs=52.0

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.| .|++|..+++.|++.|. ++.+++.+.                  .+.+.+.+.+...  ..++..+..+++
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~D~~   60 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGE------------------AGAEAAAKVATDA--GGSVIYLVADVT   60 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCceEEEECCCC
Confidence            5789998 58999999999999997 688877542                  1223333333322  235666666676


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +.+.+...+......+.+.|+||.+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~d~vi~~a   86 (255)
T TIGR01963        61 KEDEIADMIAAAAAEFGGLDILVNNA   86 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            65555444332222235678887655

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.16  E-value=0.31  Score=43.13  Aligned_cols=90  Identities=11%  Similarity=0.128  Sum_probs=57.0

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++++|.| .|++|.++++.|++.|.. +.+.....                 ..+...+.+.+++.  ..++..+.
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~~~~~-----------------~~~~~~~~~~l~~~--~~~~~~~~   63 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVINYRSD-----------------EEEANDVAEEIKKA--GGEAIAVK   63 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCC-----------------HHHHHHHHHHHHHc--CCeEEEEE
Confidence            46788999996 578999999999999964 44433211                 12344455555543  34566667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.++++.....+.+.|++|.+..
T Consensus        64 ~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag   94 (261)
T PRK08936         64 GDVTVESDVVNLIQTAVKEFGTLDVMINNAG   94 (261)
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7777666666555432222356888887653

>PRK08309 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.86  Score=38.62  Aligned_cols=100  Identities=15%  Similarity=0.216  Sum_probs=63.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL   98 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~   98 (292)
                      +++|+|..|.|..++..|+..|. ++.+++.+.                  .+++.+...+..   .-++.....++.+.
T Consensus         2 ~vlVtGGtG~gg~la~~L~~~G~-~V~v~~R~~------------------~~~~~l~~~l~~---~~~i~~~~~Dv~d~   59 (177)
T PRK08309          2 HALVIGGTGMLKRVSLWLCEKGF-HVSVIARRE------------------VKLENVKRESTT---PESITPLPLDYHDD   59 (177)
T ss_pred             EEEEECcCHHHHHHHHHHHHCcC-EEEEEECCH------------------HHHHHHHHHhhc---CCcEEEEEccCCCH
Confidence            68999998999999999999996 455544321                  122222222221   22455666677666


Q ss_pred             hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302          99 RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT  141 (292)
Q Consensus        99 ~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p  141 (292)
                      +.+...++.....+...|++|...-.. ....+..+|.+.++.
T Consensus        60 ~sv~~~i~~~l~~~g~id~lv~~vh~~-~~~~~~~~~~~~gv~  101 (177)
T PRK08309         60 DALKLAIKSTIEKNGPFDLAVAWIHSS-AKDALSVVCRELDGS  101 (177)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEecccc-chhhHHHHHHHHccC
Confidence            666655543222235788988877654 456678899999887

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.14  E-value=0.12  Score=48.10  Aligned_cols=91  Identities=19%  Similarity=0.209  Sum_probs=58.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|.+++|.|||+|.+|+.+|+.|...|+. +..+|+-.-..                +..           ...+.    
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~----------------~~~-----------~~~~~----  186 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRE----------------RAG-----------VDGVV----  186 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchh----------------hhc-----------cccce----
Confidence            67899999999999999999999999986 55555411100                000           00000    


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHh---CCceeecC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQL---GQTWFESG  146 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~---~~p~i~~~  146 (292)
                         ...++++++       ...|+|+..+. ++++|-+||..-...   |.-+|+++
T Consensus       187 ---~~~~Ld~lL-------~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a  233 (324)
T COG0111         187 ---GVDSLDELL-------AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA  233 (324)
T ss_pred             ---ecccHHHHH-------hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence               114566666       67999888775 567888887754432   44566553

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.13  E-value=0.45  Score=44.41  Aligned_cols=33  Identities=33%  Similarity=0.496  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.+|+|.|+|++|..+++.+...|+.+++.+|.
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~  209 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            679999999999999999988999988888765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=94.13  E-value=0.4  Score=46.56  Aligned_cols=37  Identities=32%  Similarity=0.418  Sum_probs=34.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|+.+||+|-|.|-+|..+|+.|...|..-+++-|.+
T Consensus       234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            5789999999999999999999999998888888876

>PRK05442 malate dehydrogenase; Provisional

Probab=94.11  E-value=0.14  Score=47.72  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=28.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGI-G-----KLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gv-g-----~i~lvD~   49 (292)
                      .||.|+|+ |.+|+.+|..|+..|+ +     +|.|+|-
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi   43 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI   43 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence            58999998 9999999999998886 5     7999985

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=94.06  E-value=0.066  Score=49.54  Aligned_cols=33  Identities=42%  Similarity=0.712  Sum_probs=30.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D   50 (292)
                      .||.|+|+|.+|+.+|..|+.-+++ ++.|+|-.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~   34 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN   34 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence            4899999999999999999999999 99999955

>PRK07201 short chain dehydrogenase; Provisional

Probab=94.04  E-value=0.28  Score=49.65  Aligned_cols=89  Identities=16%  Similarity=0.204  Sum_probs=58.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++++|.|+ |++|.++++.|++.|. ++.+++.+.                  .+.+.+.+.+....  .++..+.
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~  426 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNG------------------EALDELVAEIRAKG--GTAHAYT  426 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            456788999986 8899999999999997 687776432                  23344444454433  3566666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus       427 ~Dv~~~~~~~~~~~~~~~~~g~id~li~~Ag  457 (657)
T PRK07201        427 CDLTDSAAVDHTVKDILAEHGHVDYLVNNAG  457 (657)
T ss_pred             ecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7777666666555432223357899887664

>PRK12742 oxidoreductase; Provisional

Probab=94.00  E-value=0.16  Score=44.04  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=27.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILF   47 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lv   47 (292)
                      +|++++|+|.|+ |++|.++++.|+..|.. +.+.
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~   36 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFT   36 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEe
Confidence            366789999986 89999999999999874 5443

>PRK00811 spermidine synthase; Provisional

Probab=93.98  E-value=0.35  Score=44.11  Aligned_cols=35  Identities=26%  Similarity=0.501  Sum_probs=27.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..++|+++|+|. |......|...++.++++||-|.
T Consensus        76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~  110 (283)
T PRK00811         76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE  110 (283)
T ss_pred             CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence            457999999996 55555555556899999999776

>KOG0069|consensus

Probab=93.98  E-value=0.087  Score=49.17  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=25.6

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhC
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCG   40 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~G   40 (292)
                      ..+.+++|.|+|+|++|..+|+.|-..|
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg  185 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFG  185 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhcc
Confidence            3678999999999999999999999966

>PRK05884 short chain dehydrogenase; Provisional

Probab=93.98  E-value=0.21  Score=43.46  Aligned_cols=31  Identities=29%  Similarity=0.338  Sum_probs=26.1

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      |++|.|+ |++|..+++.|++.|. ++.++|.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~   33 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGAR   33 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            6889976 8999999999999996 67777643

>PRK06932 glycerate dehydrogenase; Provisional

Probab=93.96  E-value=0.17  Score=46.96  Aligned_cols=86  Identities=14%  Similarity=0.150  Sum_probs=56.7

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ..|++++|.|+|.|.+|..+|+.|...|+. +..+|...            ..+                   ...    
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~------------~~~-------------------~~~----  186 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKG------------ASV-------------------CRE----  186 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCc------------ccc-------------------ccc----
Confidence            368999999999999999999999988874 55544210            000                   000    


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHh---CCceeec
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQL---GQTWFES  145 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~---~~p~i~~  145 (292)
                       .   ...+++++       ...|+|+.+.. +.+++.+||+.....   +.-+|+.
T Consensus       187 -~---~~~l~ell-------~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~  232 (314)
T PRK06932        187 -G---YTPFEEVL-------KQADIVTLHCPLTETTQNLINAETLALMKPTAFLINT  232 (314)
T ss_pred             -c---cCCHHHHH-------HhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEEC
Confidence             0   02355555       67999888775 677888887765543   3345554

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.95  E-value=0.37  Score=49.21  Aligned_cols=34  Identities=26%  Similarity=0.569  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+++|+|||.|..|-..|..|++.|.. ++++|.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            467999999999999999999999975 8998864

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.95  E-value=0.11  Score=47.83  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      .+++++|+|+| .|-+|..+|.+|...|. .+++.+
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~  189 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAH  189 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEEC
Confidence            68999999999 99999999999999885 577764

>KOG2013|consensus

Probab=93.94  E-value=0.078  Score=51.26  Aligned_cols=63  Identities=25%  Similarity=0.359  Sum_probs=43.1

Q ss_pred             CccCCCCchHHHHHHHHHHHHHHHHHhCCCCCCeeEEEeCCCC-----CeeeeeccCCCCCCCccccchh
Q psy2302         188 GVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTD-----FFPKMKLKPNPSCDDSYCVQRQ  252 (292)
Q Consensus       188 ~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~~~~~~~d~~~~-----~~~~~~l~~~p~C~~~~C~~~~  252 (292)
                      |...+.+.++++++|++.+.+++|.|.+.-.-.+...+.....     .+....-+|||.|+  +|+...
T Consensus       377 gnIipaIAtTNAiIagliv~eaiKvl~~~~~~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~--vCs~~~  444 (603)
T KOG2013|consen  377 GNIIPAIATTNAIIAGLIVTEAIKVLGGDFDDCNMIFLAKRPNPRKRVLLPWALRPPNPNCP--VCSEVP  444 (603)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhccchhcceeeEEccCCCccceeecccccCCCCCCCc--cccccc
Confidence            3334567788999999999999999977555444444433222     12233348899999  899754

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.89  E-value=0.057  Score=49.64  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+.+++|+|+|.|++|..++..|.+.|. +++++|.+
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~  184 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK  184 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4578999999999999999999999997 89998864

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=93.88  E-value=0.35  Score=42.73  Aligned_cols=87  Identities=11%  Similarity=0.249  Sum_probs=55.8

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++++|.| .+|+|..+++.|++.|.. +.+++.+.                    .+.+.+.+++..  .++..+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~-vv~~~~~~--------------------~~~~~~~~~~~~--~~~~~~~   61 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGVAE--------------------APETQAQVEALG--RKFHFIT   61 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCch--------------------HHHHHHHHHHcC--CeEEEEE
Confidence            35678888886 579999999999999974 55554211                    112233444332  3566677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus        62 ~Dl~~~~~~~~~~~~~~~~~g~iD~lv~~ag   92 (251)
T PRK12481         62 ADLIQQKDIDSIVSQAVEVMGHIDILINNAG   92 (251)
T ss_pred             eCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7777767776665543223467898887753

>PLN02206 UDP-glucuronate decarboxylase

Probab=93.88  E-value=0.58  Score=45.51  Aligned_cols=35  Identities=34%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +-+++||+|.|+ |-+|+.+++.|...|. ++..+|.
T Consensus       116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~  151 (442)
T PLN02206        116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN  151 (442)
T ss_pred             ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence            667889999985 9999999999999986 4666664

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=93.87  E-value=0.93  Score=40.84  Aligned_cols=80  Identities=16%  Similarity=0.149  Sum_probs=47.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +|+|.|. |.+|.++++.|...|- -+++++|.....     +           +.    +++......-.++.+..+++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~-----~-----------~~----~~~~~~~~~~~~~~~~~Dl~   60 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYA-----G-----------NL----ENLADLEDNPRYRFVKGDIG   60 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcc-----h-----------hh----hhhhhhccCCCcEEEEcCCc
Confidence            5889986 9999999999999873 467776642210     0           00    01111111112344556676


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+.+.++.     .++|+||.+..
T Consensus        61 ~~~~~~~~~~~-----~~~d~vi~~a~   82 (317)
T TIGR01181        61 DRELVSRLFTE-----HQPDAVVHFAA   82 (317)
T ss_pred             CHHHHHHHHhh-----cCCCEEEEccc
Confidence            66666666532     24899998874

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=93.86  E-value=0.25  Score=43.77  Aligned_cols=36  Identities=22%  Similarity=0.391  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|++++|+|.| .|++|..+++.|++.|. ++.++|.+
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~   42 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIH   42 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46788999997 57999999999999996 46666643

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.86  E-value=0.67  Score=43.54  Aligned_cols=33  Identities=30%  Similarity=0.453  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..+|+|.|+|++|..+++.+...|+.+++.+|.
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~  224 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL  224 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence            578999999999999999888899988888774

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK07832 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.38  Score=42.93  Aligned_cols=86  Identities=24%  Similarity=0.322  Sum_probs=49.8

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++++|.| .|++|..+++.|++.|.. +.+++.+.                  .+.+.+.+.+....... +.....+++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r~~------------------~~~~~~~~~~~~~~~~~-~~~~~~D~~   60 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDRDA------------------DGLAQTVADARALGGTV-PEHRALDIS   60 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHhcCCCc-ceEEEeeCC
Confidence            3678886 589999999999999964 77766321                  13333444444433221 223344555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+...+++-...+.+.|+||.+..
T Consensus        61 ~~~~~~~~~~~~~~~~~~id~lv~~ag   87 (272)
T PRK07832         61 DYDAVAAFAADIHAAHGSMDVVMNIAG   87 (272)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            545554433322122356899988764

>PRK08655 prephenate dehydrogenase; Provisional

Probab=93.83  E-value=0.32  Score=47.28  Aligned_cols=31  Identities=29%  Similarity=0.586  Sum_probs=27.2

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +|.|+| +|.+|..++..|...|. +++++|.+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~   33 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD   33 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            799997 89999999999999985 68888854

>PRK07775 short chain dehydrogenase; Provisional

Probab=93.81  E-value=0.51  Score=42.27  Aligned_cols=88  Identities=18%  Similarity=0.199  Sum_probs=53.6

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ...++|+|.|+ |++|.++++.|+..|. ++.+++...                  .+...+.+.++...  .++..+..
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   66 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGF-PVALGARRV------------------EKCEELVDKIRADG--GEAVAFPL   66 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeEEEEEC
Confidence            45568999985 9999999999999997 566655321                  12222333343322  34556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+..+++.....+.+.|+||.+..
T Consensus        67 Dl~~~~~~~~~~~~~~~~~~~id~vi~~Ag   96 (274)
T PRK07775         67 DVTDPDSVKSFVAQAEEALGEIEVLVSGAG   96 (274)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            777666666555432222346788877663

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=93.80  E-value=0.23  Score=45.81  Aligned_cols=28  Identities=43%  Similarity=0.700  Sum_probs=25.4

Q ss_pred             EEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          22 VVGVGGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        22 vvG~GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      |||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di   29 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDI   29 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            68999999999999999997 57999985

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN02740 Alcohol dehydrogenase-like

Probab=93.79  E-value=0.65  Score=43.88  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +.+|+|+|+|++|..+++.+...|+.+++.+|.+
T Consensus       199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~  232 (381)
T PLN02740        199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN  232 (381)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            5689999999999999999999998888888753

>KOG0022|consensus

Probab=93.78  E-value=0.52  Score=43.59  Aligned_cols=93  Identities=27%  Similarity=0.367  Sum_probs=58.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH--hhCCCCeEEEEec
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ--NINPDVTIEVHNF   93 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~--~~np~v~v~~~~~   93 (292)
                      ..++|+|.|+|++|.++++---..|.++|+=||-.                  ..|-+-+++.=.  =+||. ...   .
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN------------------~~Kf~~ak~fGaTe~iNp~-d~~---~  249 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDIN------------------PDKFEKAKEFGATEFINPK-DLK---K  249 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecC------------------HHHHHHHHhcCcceecChh-hcc---c
Confidence            45789999999999999999999999999999831                  223322222100  02221 000   0


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL  138 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~  138 (292)
                      .+  .+-+.++-      -.++|+-++|+.+..+.+.--+.|++-
T Consensus       250 ~i--~evi~EmT------dgGvDysfEc~G~~~~m~~al~s~h~G  286 (375)
T KOG0022|consen  250 PI--QEVIIEMT------DGGVDYSFECIGNVSTMRAALESCHKG  286 (375)
T ss_pred             cH--HHHHHHHh------cCCceEEEEecCCHHHHHHHHHHhhcC
Confidence            01  01222221      168999999999998877666666654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.76  E-value=0.21  Score=48.62  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=32.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      -+.++||+|+|.|..|-.+|+.|.+.|. ++++.|.+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~   47 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS   47 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            4567899999999999999999999996 688888543

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.75  E-value=0.53  Score=45.66  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +||+|+|.|+.|..+|..|.+.|. ++++.|...
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~   33 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND   33 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            479999999999999999999997 688888543

>PRK08703 short chain dehydrogenase; Provisional

Probab=93.74  E-value=0.44  Score=41.47  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      |++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r   38 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVAR   38 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence            56789999986 8999999999999997 5777764

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.71  E-value=0.42  Score=41.41  Aligned_cols=89  Identities=16%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|. |++|..+++.|++.|.. +.++..+..                 ++.....+.++..  ..++..+..
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~~~~~~   62 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSE-----------------AGAEALVAEIGAL--GGKALAVQG   62 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCch-----------------hHHHHHHHHHHhc--CCceEEEEc
Confidence            45678999975 89999999999999975 433332110                 1122222333322  234556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.-...+.+.|.||.+..
T Consensus        63 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   92 (248)
T PRK05557         63 DVSDAESVERAVDEAKAEFGGVDILVNNAG   92 (248)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666655555443321112346788887763

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.67  E-value=0.21  Score=49.04  Aligned_cols=42  Identities=17%  Similarity=0.291  Sum_probs=34.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNR   59 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R   59 (292)
                      .+|+|+|+|-+|..+|..|+..|.| +++.+|-|.-....++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~   44 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS   44 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence            4799999999999999999999875 57788877666666655

>PRK12746 short chain dehydrogenase; Provisional

Probab=93.66  E-value=0.25  Score=43.39  Aligned_cols=89  Identities=12%  Similarity=0.115  Sum_probs=52.2

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.| .|++|+++++.|++.|.. +.+.+...                 ..+.+...+.+...  ..++..+.
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~~~r~-----------------~~~~~~~~~~~~~~--~~~~~~~~   62 (254)
T PRK12746          3 NLDGKVALVTGASRGIGRAIAMRLANDGAL-VAIHYGRN-----------------KQAADETIREIESN--GGKAFLIE   62 (254)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCC-----------------HHHHHHHHHHHHhc--CCcEEEEE
Confidence            46678999997 679999999999998864 43322111                 01222233333322  23456677


Q ss_pred             ccccchhhHHHHHhcCCCCC------CCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTE------GPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~------~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+      .+.|+||.+.
T Consensus        63 ~D~~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~a   98 (254)
T PRK12746         63 ADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNA   98 (254)
T ss_pred             cCcCCHHHHHHHHHHHHHHhccccCCCCccEEEECC
Confidence            77777666655443211111      2578888665

>PRK06180 short chain dehydrogenase; Provisional

Probab=93.65  E-value=0.35  Score=43.37  Aligned_cols=83  Identities=17%  Similarity=0.294  Sum_probs=49.5

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.|+ |++|..+++.|++.|. ++.+++.+.                  .+.    +.+.+.++ -++.....++
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~------------------~~~----~~l~~~~~-~~~~~~~~D~   59 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSE------------------AAR----ADFEALHP-DRALARLLDV   59 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCH------------------HHH----HHHHhhcC-CCeeEEEccC
Confidence            467889976 8899999999999996 477776432                  111    12222222 1344555566


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+...++.....+.+.|+||.+..
T Consensus        60 ~d~~~~~~~~~~~~~~~~~~d~vv~~ag   87 (277)
T PRK06180         60 TDFDAIDAVVADAEATFGPIDVLVNNAG   87 (277)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            6655555444322212346788887754

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=93.63  E-value=0.35  Score=46.73  Aligned_cols=95  Identities=17%  Similarity=0.196  Sum_probs=61.5

Q ss_pred             cEEEEcCChHHH-HHHHHHHH----hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          19 TVIVVGVGGVGS-VTAEMLTR----CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        19 ~V~vvG~GglGs-~va~~La~----~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ||+|||+|+.-+ .+...|+.    .++++|.|+|-|.  +..|..           =...+++.+.+..+.++++... 
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~-----------v~~~~~~~~~~~~~~~~v~~t~-   67 (419)
T cd05296           2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI-----------VGALAKRMVKKAGLPIKVHLTT-   67 (419)
T ss_pred             EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH-----------HHHHHHHHHHhhCCCeEEEEeC-
Confidence            799999999865 45555554    5679999999874  222211           1234555666677777777654 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQ  140 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~  140 (292)
                            +.++-+       .+.|+||.+.-  ..+.|..-.+...++|+
T Consensus        68 ------d~~~al-------~gadfVi~~~~vg~~~~r~~de~i~~~~Gi  103 (419)
T cd05296          68 ------DRREAL-------EGADFVFTQIRVGGLEARALDERIPLKHGV  103 (419)
T ss_pred             ------CHHHHh-------CCCCEEEEEEeeCCcchhhhhhhhHHHcCC
Confidence                  333333       78999998863  44566555666777765

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK05993 short chain dehydrogenase; Provisional

Probab=93.60  E-value=0.26  Score=44.25  Aligned_cols=33  Identities=18%  Similarity=0.368  Sum_probs=27.4

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~   37 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGW-RVFATCRK   37 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467999988 9999999999999986 57776643

>PRK06179 short chain dehydrogenase; Provisional

Probab=93.56  E-value=0.19  Score=44.75  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=26.7

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++|+|.|+ |++|..+++.|++.|.. +++++.+
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~   37 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYR-VFGTSRN   37 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            457888875 89999999999999864 7777754

>PLN03139 formate dehydrogenase; Provisional

Probab=93.54  E-value=0.3  Score=46.71  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|.+++|.|||+|.+|..+|+.|...|+. +..+|.
T Consensus       196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~  230 (386)
T PLN03139        196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR  230 (386)
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence            68999999999999999999999999975 566664

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.52  E-value=0.46  Score=41.50  Aligned_cols=89  Identities=13%  Similarity=0.111  Sum_probs=50.9

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|+.+++.|+..|.. +.++...                 ...+.....+.+++..  .++..+..
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~-v~~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~   63 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSL-VVVNAKK-----------------RAEEMNETLKMVKENG--GEGIGVLA   63 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC-----------------ChHHHHHHHHHHHHcC--CeeEEEEe
Confidence            45788999985 56999999999999985 3332211                 0012222223344332  23445556


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|.||.+..
T Consensus        64 D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag   93 (252)
T PRK06077         64 DVSTREGCETLAKATIDRYGVADILVNNAG   93 (252)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666655555444332222357899888764

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.52  E-value=0.18  Score=48.71  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=28.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      .+++++++|.|+ |++|..+++.|++.|.. +.++|
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~-vi~~~  241 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAH-VVCLD  241 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence            456789999988 99999999999999975 55555

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.51  E-value=0.11  Score=47.94  Aligned_cols=33  Identities=42%  Similarity=0.604  Sum_probs=30.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      ||.|||+|.+|+.+|..|++.|+ .++.++|.+.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            79999999999999999999996 7899999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05693 short chain dehydrogenase; Provisional

Probab=93.49  E-value=0.3  Score=43.59  Aligned_cols=32  Identities=19%  Similarity=0.391  Sum_probs=25.8

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ++|+|.|+ |++|..+++.|++.|. ++.+++.+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~   34 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARK   34 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46888876 8999999999999985 57776643

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=93.48  E-value=0.12  Score=48.49  Aligned_cols=43  Identities=21%  Similarity=0.325  Sum_probs=37.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR   59 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R   59 (292)
                      .+.+|+|||.|-+|..+|..|++.|. +++++|.+.+...+-.|
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~   45 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGR   45 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhc
Confidence            36789999999999999999999999 99999988886544444

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=93.48  E-value=0.62  Score=40.47  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=52.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+ |++|..+++.|+..|.. +.++..         |        ...+.+.....+...  ..++..+..+++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~-v~~~~~---------~--------~~~~~~~~~~~~~~~--~~~~~~~~~D~~   61 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYT-VAVNYQ---------Q--------NLHAAQEVVNLITQA--GGKAFVLQADIS   61 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC---------C--------ChHHHHHHHHHHHhC--CCeEEEEEccCC
Confidence            46888876 78999999999999875 433211         1        012333344444443  234566777777


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+...++.-...+.+.|+||.+..
T Consensus        62 d~~~i~~~~~~~~~~~~~id~vi~~ag   88 (247)
T PRK09730         62 DENQVVAMFTAIDQHDEPLAALVNNAG   88 (247)
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            766666555432222457889988775

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.48  E-value=0.3  Score=45.49  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=29.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+.+|+|+|+|++|...++.+...|+ +++.+|.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            57899999999999999999999998 6777775

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=93.40  E-value=0.45  Score=41.46  Aligned_cols=89  Identities=15%  Similarity=0.220  Sum_probs=54.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHH--HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLT--RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La--~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..+|+|+|+|.+|..++..+.  ..|+.-+.++|.|.-   ...+..                      ..+.+.     
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~---~~~~~i----------------------~g~~v~-----  133 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE---KIGTKI----------------------GGIPVY-----  133 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh---hcCCEe----------------------CCeEEc-----
Confidence            468999999999999998643  456666777876531   111100                      011111     


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                        ..+++.+++..     .+.|.|+.|+...... .+.+.+.+.|+..+
T Consensus       134 --~~~~l~~li~~-----~~iD~ViIa~P~~~~~-~i~~~l~~~Gi~~i  174 (213)
T PRK05472        134 --HIDELEEVVKE-----NDIEIGILTVPAEAAQ-EVADRLVEAGIKGI  174 (213)
T ss_pred             --CHHHHHHHHHH-----CCCCEEEEeCCchhHH-HHHHHHHHcCCCEE
Confidence              12455555532     4699999998876544 44566777776443

>PRK13529 malate dehydrogenase; Provisional

Probab=93.39  E-value=0.36  Score=47.96  Aligned_cols=112  Identities=7%  Similarity=0.042  Sum_probs=65.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHH----hCC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTR----CGI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~----~Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      +|++.||+++|+|+.|..+|++|..    .|+      ++|.++|.+=+=.+       ...|+...|...+++    .+
T Consensus       292 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~-------~r~~l~~~k~~fa~~----~~  360 (563)
T PRK13529        292 PLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTD-------DMPDLLDFQKPYARK----RE  360 (563)
T ss_pred             ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeC-------CCCcchHHHHHHhhh----cc
Confidence            7889999999999999999999997    599      69999997642111       112344444444433    11


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      + +.  ..... ....++.+.++.     -++|++|-++.  +.-+...|...+.....|.|++
T Consensus       361 ~-~~--~~~~~-~~~~~L~e~v~~-----~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa  415 (563)
T PRK13529        361 E-LA--DWDTE-GDVISLLEVVRN-----VKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFP  415 (563)
T ss_pred             c-cc--ccccc-cCCCCHHHHHhc-----cCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence            1 10  00000 001244455432     24588887665  3334556666666556677654

>PRK07791 short chain dehydrogenase; Provisional

Probab=93.38  E-value=0.49  Score=42.82  Aligned_cols=98  Identities=18%  Similarity=0.204  Sum_probs=59.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++++|.|+ +|+|..+++.|++.|. ++.++|.+.   +     + ...+=+..+.+.+.+.+.+..  .++..+.
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~---~-----~-~~~~~~~~~~~~~~~~l~~~~--~~~~~~~   70 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV---G-----L-DGSASGGSAAQAVVDEIVAAG--GEAVANG   70 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc---c-----c-cccccchhHHHHHHHHHHhcC--CceEEEe
Confidence            366788888865 6999999999999997 466666431   0     0 000111234445555555432  3455667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.....+.+.|++|.+..
T Consensus        71 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG  101 (286)
T PRK07791         71 DDIADWDGAANLVDAAVETFGGLDVLVNNAG  101 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7777766666555443333467899888653

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.37  E-value=0.077  Score=43.82  Aligned_cols=106  Identities=18%  Similarity=0.225  Sum_probs=53.1

Q ss_pred             cEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ||+|+|+|.+|..+++.+.. .++.-..+.|.  .++..+...+-..+--|+.+..+-.     .+-...+......+..
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a~ll~~Ds~hg~~~~~v~~-----~~~~l~i~g~~i~~~~   74 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLAHLLKYDSVHGRFPGEVEV-----DEDGLIVNGKKIKVLA   74 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHHHHhcccCCCCCCCCcEEE-----eCCEEEECCEEEEEEe
Confidence            79999999999999999875 34544445542  3333333322112334554332110     0111111111111111


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC  135 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~  135 (292)
                      ..+..++    ++.-.+.|+||+|+.-+.++.....+.
T Consensus        75 ~~~p~~~----~w~~~gvDiVie~tG~f~~~~~~~~hl  108 (149)
T smart00846       75 ERDPANL----PWKELGVDIVVECTGKFTTREKASAHL  108 (149)
T ss_pred             cCChHHC----cccccCCeEEEeccccccchHHHHHHH
Confidence            1222211    111147899999999887776554443

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=93.37  E-value=0.5  Score=50.17  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=34.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELAN   56 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sN   56 (292)
                      ..+||+|||+|.-|-.+|..|++.|.. ++++|...++.-|
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl~  421 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLLP  421 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccccc
Confidence            678999999999999999999999954 9999987655443

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.33  E-value=1  Score=41.30  Aligned_cols=120  Identities=19%  Similarity=0.200  Sum_probs=71.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .||.+||+|..|..+|.+|.+.| -.+++.|.+.=......+ -.+......+ ++++++      -++-|.-..    +
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r~~~ka~~~~~-~~Ga~~a~s~-~eaa~~------aDvVitmv~----~   67 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNRTPEKAAELLA-AAGATVAASP-AEAAAE------ADVVITMLP----D   67 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeCChhhhhHHHH-HcCCcccCCH-HHHHHh------CCEEEEecC----C
Confidence            47999999999999999999999 457777755321100000 0111222222 222222      244444333    2


Q ss_pred             hhhHHHHHhcCCCCC---CCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCcccc
Q psy2302          98 LRKVGALAVQGSLTE---GPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSEN  150 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~---~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~~  150 (292)
                      .....+.+.......   .+-.++||++. ++...+.+.+...+.|..|+++-+++.
T Consensus        68 ~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg  124 (286)
T COG2084          68 DAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGG  124 (286)
T ss_pred             HHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCC
Confidence            345555543211111   24567777654 577778889999999999999988863

>PRK06483 dihydromonapterin reductase; Provisional

Probab=93.32  E-value=0.3  Score=42.49  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=26.6

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .++++|.|+ |++|.++++.|++.|. ++.++|.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r   34 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYR   34 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence            467899986 7899999999999997 6777664

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=93.30  E-value=0.57  Score=40.86  Aligned_cols=89  Identities=15%  Similarity=0.190  Sum_probs=54.3

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++++|.| .|++|..+++.|++.|.. +++.+...                 ..+.+...+.+.+.  ..++.....
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~-v~~~~~~~-----------------~~~~~~~~~~l~~~--~~~~~~~~~   63 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGAK-VVINYNSS-----------------KEAAENLVNELGKE--GHDVYAVQA   63 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEcCCc-----------------HHHHHHHHHHHHhc--CCeEEEEEC
Confidence            5678899996 789999999999999865 33432100                 01222333344332  235666677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+...|+||.+..
T Consensus        64 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag   93 (247)
T PRK12935         64 DVSKVEDANRLVEEAVNHFGKVDILVNNAG   93 (247)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777656666555432223356899987764

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.30  E-value=0.9  Score=41.27  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=26.4

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +|+|.|. |.+|+.++..|++.|. +++.+|..
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~   33 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP   33 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence            6899985 9999999999999985 68877753

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.29  E-value=0.65  Score=41.78  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+.+|+|.|+|++|..+++.+...|+.+++.+|.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~  153 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP  153 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            5679999999999999999888899988888763

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.29  E-value=0.14  Score=46.74  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD   48 (292)
                      .+++++|+|||-| -+|..++..|...| ..+++.+
T Consensus       154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~g-AtVtv~h  188 (285)
T PRK14191        154 EIKGKDVVIIGASNIVGKPLAMLMLNAG-ASVSVCH  188 (285)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCC-CEEEEEe
Confidence            7889999999999 99999999999887 4466653

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.25  E-value=0.4  Score=47.86  Aligned_cols=103  Identities=11%  Similarity=0.070  Sum_probs=64.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHH-----hCC------CeEEEEeCCcccccCCCCCccCcCC-CCChHHHHHHHHHHh
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTR-----CGI------GKLILFDYDKVELANMNRLFFQPDQ-CGLSKVEAARITLQN   81 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~-----~Gv------g~i~lvD~D~V~~sNl~R~~~~~~d-iG~~Ka~a~~~~l~~   81 (292)
                      +|++.||+++|+|+.|..+|++|..     .|+      ++|.++|.+=+=..       +..+ +-..|...+++    
T Consensus       318 ~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~-------~r~~~l~~~k~~fa~~----  386 (581)
T PLN03129        318 DLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTK-------SRKDSLQPFKKPFAHD----  386 (581)
T ss_pred             chhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeC-------CCCccChHHHHHHHhh----
Confidence            7899999999999999999999998     477      79999997632111       1112 44445544443    


Q ss_pred             hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC--CHHHHHHHHHHHHHhCCceeec
Q psy2302          82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD--NFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d--~~~~r~~in~~~~~~~~p~i~~  145 (292)
                       .+.            ..++.+.++.     -++|++|-++.  +.-+..+|...+.....|.|++
T Consensus       387 -~~~------------~~~L~e~v~~-----vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFa  434 (581)
T PLN03129        387 -HEP------------GASLLEAVKA-----IKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFA  434 (581)
T ss_pred             -ccc------------CCCHHHHHhc-----cCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence             110            0234444421     24788887764  3345556666666666677764

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=93.21  E-value=0.68  Score=42.39  Aligned_cols=80  Identities=13%  Similarity=0.049  Sum_probs=47.3

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.|+ |++|+.++..|+..|. ++.+++.|.-..                  ......+......-+++.+..++
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~------------------~~~~~~~~~~~~~~~~~~~~~D~   65 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDR------------------KKTDHLLALDGAKERLKLFKADL   65 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcch------------------hhHHHHHhccCCCCceEEEeCCC
Confidence            578999985 8999999999999986 455554332110                  00111111001112355556667


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+.+.+       .++|+||.+.
T Consensus        66 ~d~~~~~~~~-------~~~d~vih~A   85 (325)
T PLN02989         66 LDEGSFELAI-------DGCETVFHTA   85 (325)
T ss_pred             CCchHHHHHH-------cCCCEEEEeC
Confidence            6656666655       5688888775

>PLN02852 ferredoxin-NADP+ reductase

Probab=93.21  E-value=0.59  Score=46.10  Aligned_cols=42  Identities=29%  Similarity=0.351  Sum_probs=32.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHH--hCCCeEEEEeCCcccccCCCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTR--CGIGKLILFDYDKVELANMNR   59 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~--~Gvg~i~lvD~D~V~~sNl~R   59 (292)
                      ..+||+|||.|.-|.+.|..|++  .| .+++|+|... .+-.+.|
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p-~pgGlvr   68 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLP-TPFGLVR   68 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCC-CCcceEe
Confidence            36789999999999999999997  45 4799999665 2334444

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=93.20  E-value=0.42  Score=43.81  Aligned_cols=118  Identities=14%  Similarity=0.129  Sum_probs=66.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .+|.|||+|.+|..++..|++.|. +++++|.+.-....+..       .|...+....+.++  ..++-+...+.    
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~-------~g~~~~~s~~~~~~--~aDvVi~~vp~----   67 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVD-------KGATPAASPAQAAA--GAEFVITMLPN----   67 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH-------cCCcccCCHHHHHh--cCCEEEEecCC----
Confidence            379999999999999999999995 68888865322211111       12112211222221  12333333322    


Q ss_pred             hhhHHHHHhcCCC---CCCCcceEEecc-CCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          98 LRKVGALAVQGSL---TEGPVDLVLSCV-DNFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        98 ~~~~~~~i~~~~~---~~~~~DlVv~a~-d~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      ...+...+.....   ....-.++|+++ -.+.....+.+...+.++.++++.+.+
T Consensus        68 ~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g  123 (296)
T PRK15461         68 GDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR  123 (296)
T ss_pred             HHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence            1223333321111   112334666665 456666778888888999999888765

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=93.19  E-value=0.67  Score=43.16  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=48.3

Q ss_pred             hcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .+++|+|.| .|.+|+.+++.|+..|. ++.+++.+.                  .+.+.....+.   ...+++.+..+
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~~~---~~~~~~~~~~D   66 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDP------------------AKSLHLLSKWK---EGDRLRLFRAD   66 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCh------------------HHHHHHHHhhc---cCCeEEEEECC
Confidence            466899998 58899999999999986 455544321                  01111111111   12345566677


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +++.+.+.+.+       .++|.||.+.
T Consensus        67 l~~~~~~~~~~-------~~~d~Vih~A   87 (353)
T PLN02896         67 LQEEGSFDEAV-------KGCDGVFHVA   87 (353)
T ss_pred             CCCHHHHHHHH-------cCCCEEEECC
Confidence            77656666655       4678888665

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.19  E-value=0.47  Score=45.09  Aligned_cols=35  Identities=29%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.+.+|.|||+ |-+|..+++.|....-.+++.+|.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            35679999999 999999999999754346777775

>PRK08177 short chain dehydrogenase; Provisional

Probab=93.17  E-value=0.45  Score=41.12  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=27.8

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|+|.| .|++|..+++.|++.|. ++.++|.+.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            4688887 78999999999999997 788888543

>PLN02214 cinnamoyl-CoA reductase

Probab=93.17  E-value=1.8  Score=40.20  Aligned_cols=105  Identities=13%  Similarity=0.022  Sum_probs=61.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++.++|+|.|+ |.+|+.+++.|...|. +++.++.+.   ++             .+.... +.+...  .-+++.+..
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~-------------~~~~~~-~~~~~~--~~~~~~~~~   67 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DD-------------PKNTHL-RELEGG--KERLILCKA   67 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hh-------------hhHHHH-HHhhCC--CCcEEEEec
Confidence            46789999998 9999999999999986 455544321   00             011111 111111  113455566


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC----H--------HHHHHHHHHHHHhCC-ceeecC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN----F--------EARMTINMACNQLGQ-TWFESG  146 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~----~--------~~r~~in~~~~~~~~-p~i~~~  146 (292)
                      ++++.+.+.+.+       .++|+||.+...    +        .....+-++|.+.++ .+++.+
T Consensus        68 Dl~d~~~~~~~~-------~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~S  126 (342)
T PLN02214         68 DLQDYEALKAAI-------DGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITS  126 (342)
T ss_pred             CcCChHHHHHHH-------hcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence            666656666655       578999887632    1        112445667777776 355543

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=93.16  E-value=2.1  Score=37.24  Aligned_cols=93  Identities=19%  Similarity=0.180  Sum_probs=58.4

Q ss_pred             EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302          20 VIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL   98 (292)
Q Consensus        20 V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~   98 (292)
                      |+|+|+ |.+|..++..|...|.. ++.+          .|.    .     +. ...+.|+.  ..+++.  ..+..+.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l----------~R~----~-----~~-~~~~~l~~--~g~~vv--~~d~~~~   55 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFS-VRAL----------VRD----P-----SS-DRAQQLQA--LGAEVV--EADYDDP   55 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGC-EEEE----------ESS----S-----HH-HHHHHHHH--TTTEEE--ES-TT-H
T ss_pred             CEEECCccHHHHHHHHHHHhCCCC-cEEE----------Eec----c-----ch-hhhhhhhc--ccceEe--ecccCCH
Confidence            789997 99999999999996654 4331          111    1     11 12233443  245543  4455555


Q ss_pred             hhHHHHHhcCCCCCCCcceEEeccCC---H--HHHHHHHHHHHHhCCceee
Q psy2302          99 RKVGALAVQGSLTEGPVDLVLSCVDN---F--EARMTINMACNQLGQTWFE  144 (292)
Q Consensus        99 ~~~~~~i~~~~~~~~~~DlVv~a~d~---~--~~r~~in~~~~~~~~p~i~  144 (292)
                      +.+.+.+       .+.|.|+.++..   .  .....+-++|.+.|+.++.
T Consensus        56 ~~l~~al-------~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v   99 (233)
T PF05368_consen   56 ESLVAAL-------KGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFV   99 (233)
T ss_dssp             HHHHHHH-------TTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEE
T ss_pred             HHHHHHH-------cCCceEEeecCcchhhhhhhhhhHHHhhhccccceEE
Confidence            6666665       799999999883   2  3446678899999987653

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=93.13  E-value=0.38  Score=45.76  Aligned_cols=32  Identities=34%  Similarity=0.613  Sum_probs=28.5

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+|+||| .|.+|..++..|.+.|. .++++|.+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence            6899998 99999999999999994 58888864

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.09  E-value=0.12  Score=43.87  Aligned_cols=34  Identities=29%  Similarity=0.557  Sum_probs=27.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVE   53 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~   53 (292)
                      +|.|+|+|..|..+|..+++.|. +++++|.+.-.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEA   34 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHH
Confidence            69999999999999999999994 59999986543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.06  E-value=0.5  Score=45.73  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHh
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRC   39 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~   39 (292)
                      .-+|.|+|+|.+|+.+++.|...
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~   25 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEEN   25 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHh
Confidence            35899999999999999888643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.06  E-value=0.64  Score=49.51  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .++||+|||+|.-|-..|..|++.|. +++++|..
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~  338 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAF  338 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Confidence            47999999999999999999999997 58998854

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.04  E-value=0.6  Score=45.16  Aligned_cols=36  Identities=22%  Similarity=0.500  Sum_probs=30.9

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+++|+|+|.|+.|..+|+.|++.|. ++++.|.+.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~   38 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL   38 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            457899999999999999999999996 588888543

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.04  E-value=0.54  Score=46.28  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++++|.|+|.|+.|..+|..|.+.|. +++..|..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~   39 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR   39 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence            457799999999999999999999997 68888854

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.01  E-value=0.4  Score=41.91  Aligned_cols=32  Identities=31%  Similarity=0.513  Sum_probs=25.8

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILF   47 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lv   47 (292)
                      |++++++|.| .|++|.++++.|+..|.. +.++
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~-vv~~   35 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGAR-VVVN   35 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEE
Confidence            4567899997 679999999999999974 4443

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=93.00  E-value=0.44  Score=44.82  Aligned_cols=98  Identities=15%  Similarity=0.179  Sum_probs=56.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEE-EEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLI-LFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~-lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .||+|+|+ |.+|.++++.|...-.-++. +++.+.              ..|+        .+.+.+|.++... ...+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~--------------sagk--------~~~~~~~~l~~~~-~~~~   57 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE--------------SAGK--------PVSEVHPHLRGLV-DLNL   57 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch--------------hcCC--------ChHHhCccccccC-Ccee
Confidence            37999999 99999999999976444455 556542              1121        1222223221100 0011


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGV  147 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~  147 (292)
                      .. .+.++++       .++|+|+.|+.+...+.++.++ .+.|+.+|+.+.
T Consensus        58 ~~-~~~~~~~-------~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~  100 (346)
T TIGR01850        58 EP-IDEEEIA-------EDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA  100 (346)
T ss_pred             ec-CCHHHhh-------cCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence            11 1122222       4799999999998777666654 457888887643

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.99  E-value=0.31  Score=45.03  Aligned_cols=32  Identities=28%  Similarity=0.458  Sum_probs=28.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ++|.|||+|-.|+-+|..++.+|. .+++.|..
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence            589999999999999999999554 58888866

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=92.98  E-value=0.7  Score=42.32  Aligned_cols=116  Identities=17%  Similarity=0.176  Sum_probs=67.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL   98 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~   98 (292)
                      +|.+||+|-.|..++.+|.+.|. ++++.|.+.    +..+ +   .+.|-..+...++-++  ..++-+.....    .
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~~~-~---~~~g~~~~~s~~~~~~--~advVi~~v~~----~   66 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VADE-L---LSLGAVSVETARQVTE--ASDIIFIMVPD----T   66 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hHHH-H---HHcCCeecCCHHHHHh--cCCEEEEeCCC----h
Confidence            69999999999999999999996 677877643    1111 1   1122222222222111  23444433332    1


Q ss_pred             hhHHHHHhcCC---CCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          99 RKVGALAVQGS---LTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        99 ~~~~~~i~~~~---~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      ....+.+....   ....+-.+|||++. ++.....+.+.+.++|..|+++-+.+
T Consensus        67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG  121 (292)
T PRK15059         67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG  121 (292)
T ss_pred             HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence            33344332110   01123467777764 56667778888999999999987765

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.98  E-value=0.15  Score=46.55  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|+|+|.+|+.+|..|+..|. +++++|.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999997 699998654

>PRK06482 short chain dehydrogenase; Provisional

Probab=92.97  E-value=0.68  Score=41.30  Aligned_cols=82  Identities=21%  Similarity=0.184  Sum_probs=48.5

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.| .|++|..++..|+..|. ++.+++.+.                  .+.    +.+.+..+. ++..+..++
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~------------------~~~----~~~~~~~~~-~~~~~~~D~   57 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGD-RVAATVRRP------------------DAL----DDLKARYGD-RLWVLQLDV   57 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHH----HHHHHhccC-ceEEEEccC
Confidence            35789998 48999999999999986 466655321                  011    122222221 455666677


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+.+.+.+....+.+.|+||.+.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~id~vi~~a   84 (276)
T PRK06482         58 TDSAAVRAVVDRAFAALGRIDVVVSNA   84 (276)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            665555544432111124679998875

>PRK06123 short chain dehydrogenase; Provisional

Probab=92.97  E-value=0.61  Score=40.64  Aligned_cols=87  Identities=16%  Similarity=0.129  Sum_probs=51.8

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++.++|.|+ |++|+.+++.|++.|.. +.+.+...                 ..+.....+.+.+.+  .++..+..++
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~-vv~~~~~~-----------------~~~~~~~~~~l~~~~--~~~~~~~~Dl   61 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYA-VCLNYLRN-----------------RDAAEAVVQAIRRQG--GEALAVAADV   61 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCe-EEEecCCC-----------------HHHHHHHHHHHHhCC--CcEEEEEecc
Confidence            456888876 78999999999999864 54543211                 013333444454433  2345566667


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+...+......+.+.|+||.+..
T Consensus        62 ~~~~~~~~~~~~~~~~~~~id~li~~ag   89 (248)
T PRK06123         62 ADEADVLRLFEAVDRELGRLDALVNNAG   89 (248)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            6656666554432223357888887763

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=92.96  E-value=0.13  Score=48.14  Aligned_cols=34  Identities=15%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEE
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILF   47 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lv   47 (292)
                      .|.+++|+|||+|-+|..++++|...|+.++++.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~  204 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFC  204 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEE
Confidence            4788999999999999999999999999999994

>PRK06046 alanine dehydrogenase; Validated

Probab=92.95  E-value=0.67  Score=43.15  Aligned_cols=76  Identities=13%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ...+|.|+|+|..|...+..|.. .++.++.++|.+.                  .|++.+++++++.. .+++..+   
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~------------------~~~~~~~~~~~~~~-~~~v~~~---  185 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK------------------SSAEKFVERMSSVV-GCDVTVA---  185 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH------------------HHHHHHHHHHHhhc-CceEEEe---
Confidence            35789999999999999999984 4788898877544                  36666666665443 2344332   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                          +++++.+       . .|+|+.||.+.
T Consensus       186 ----~~~~~~l-------~-aDiVv~aTps~  204 (326)
T PRK06046        186 ----EDIEEAC-------D-CDILVTTTPSR  204 (326)
T ss_pred             ----CCHHHHh-------h-CCEEEEecCCC
Confidence                2344443       4 99999999763

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=92.92  E-value=1.2  Score=42.54  Aligned_cols=108  Identities=23%  Similarity=0.338  Sum_probs=60.0

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +..+|+|+|. |.+|+.+++.|...|. ++++++.+.-.   +.         ++.    ..+.+....+.+  +....+
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~---~~---------~~~----~~~~~~~~~~~v--~~v~~D  119 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG---IR---------GKN----GKEDTKKELPGA--EVVFGD  119 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh---cc---------ccc----hhhHHhhhcCCc--eEEEee
Confidence            4568999986 9999999999999886 46666533210   00         000    011111223333  345556


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCH------------HHHHHHHHHHHHhCCc-eeec
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNF------------EARMTINMACNQLGQT-WFES  145 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~------------~~r~~in~~~~~~~~p-~i~~  145 (292)
                      +++.+.+...++...   .++|+||.|....            .....+-++|.+.++. ++..
T Consensus       120 l~d~~~l~~~~~~~~---~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i  180 (390)
T PLN02657        120 VTDADSLRKVLFSEG---DPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL  180 (390)
T ss_pred             CCCHHHHHHHHHHhC---CCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence            666566666653210   1689999875321            1123445667777764 4443

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=92.92  E-value=1.3  Score=45.29  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=28.5

Q ss_pred             HHHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          13 EHIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        13 ~~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..-++++|+|.| .|-+|+++++.|...|=-+++.+|.
T Consensus       311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r  348 (660)
T PRK08125        311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI  348 (660)
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence            345678999998 5999999999999864235666664

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=92.92  E-value=0.65  Score=49.65  Aligned_cols=34  Identities=26%  Similarity=0.482  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .++|+|||.|.-|-..|..|++.|. +++|+|...
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~  570 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE  570 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            4689999999999999999999996 699998653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PLN02712 arogenate dehydrogenase

Probab=92.91  E-value=0.61  Score=47.76  Aligned_cols=33  Identities=21%  Similarity=0.421  Sum_probs=28.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..+|.|||+|.+|..++..|.+.|+ ++..+|.+
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~   84 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGH-TVLAHSRS   84 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4589999999999999999999985 67777754

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.91  E-value=0.51  Score=45.49  Aligned_cols=41  Identities=27%  Similarity=0.394  Sum_probs=32.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR   59 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R   59 (292)
                      ++|.|+|+|-+|..+|..|+..| -+++.+|.|.-....+++
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~~   44 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINR   44 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHHC
Confidence            68999999999999999999999 468888865543333433

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=92.90  E-value=0.19  Score=47.79  Aligned_cols=38  Identities=34%  Similarity=0.446  Sum_probs=33.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVEL   54 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~   54 (292)
                      ...|+|||.|-+|+.+|..|++. |..+++|+|.+.+-.
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~   68 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGG   68 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccC
Confidence            44799999999999999999985 877899999887654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=92.90  E-value=0.1  Score=51.22  Aligned_cols=35  Identities=31%  Similarity=0.622  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+++++|+|+|+|++|..++..|+..|+ +++++|.
T Consensus       329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R  363 (477)
T PRK09310        329 PLNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR  363 (477)
T ss_pred             CcCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3578899999999999999999999998 8888764

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.89  E-value=0.35  Score=46.56  Aligned_cols=88  Identities=17%  Similarity=0.289  Sum_probs=58.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|.+++|.|+|.|.+|..+|+.|...|. ++..+|...       +     ..               . ..+  +.   
T Consensus       148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~-------~-----~~---------------~-~~~--~~---  193 (409)
T PRK11790        148 EVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED-------K-----LP---------------L-GNA--RQ---  193 (409)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc-------c-----cc---------------c-CCc--ee---
Confidence            6899999999999999999999999887 566666311       0     00               0 011  10   


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHh---CCceeecC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQL---GQTWFESG  146 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~---~~p~i~~~  146 (292)
                          ...+++++       ..+|+|+.+.. +.+++.++|+.....   +.-+|+.+
T Consensus       194 ----~~~l~ell-------~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~a  239 (409)
T PRK11790        194 ----VGSLEELL-------AQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS  239 (409)
T ss_pred             ----cCCHHHHH-------hhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence                12455555       67899888765 567888887754443   33455553

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.89  E-value=0.85  Score=46.46  Aligned_cols=35  Identities=34%  Similarity=0.602  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..++|+|||.|..|-..|..|++.|. +++++|...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence            47999999999999999999999998 589988543

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=92.88  E-value=0.56  Score=36.55  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=46.5

Q ss_pred             cCChHHHHHHHHHHHh----CCCeEEEEeCC-cccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302          24 GVGGVGSVTAEMLTRC----GIGKLILFDYD-KVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL   98 (292)
Q Consensus        24 G~GglGs~va~~La~~----Gvg~i~lvD~D-~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~   98 (292)
                      |+|.+|+.+++.|.+.    ++.-..+.|.+ .++..                      ..... +...+.         
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~----------------------~~~~~-~~~~~~---------   48 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKD----------------------WAASF-PDEAFT---------   48 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETT----------------------HHHHH-THSCEE---------
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhh----------------------hhhhc-cccccc---------
Confidence            8999999999999976    45556666655 11110                      11111 111111         


Q ss_pred             hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302          99 RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG  146 (292)
Q Consensus        99 ~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~  146 (292)
                      .+++++++.     .+.|+||+|+.......++. .+.++|+.+|.+.
T Consensus        49 ~~~~~~~~~-----~~~dvvVE~t~~~~~~~~~~-~~L~~G~~VVt~n   90 (117)
T PF03447_consen   49 TDLEELIDD-----PDIDVVVECTSSEAVAEYYE-KALERGKHVVTAN   90 (117)
T ss_dssp             SSHHHHHTH-----TT-SEEEE-SSCHHHHHHHH-HHHHTTCEEEES-
T ss_pred             CCHHHHhcC-----cCCCEEEECCCchHHHHHHH-HHHHCCCeEEEEC
Confidence            344555521     27999999987766655443 5566788777653

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=92.83  E-value=0.6  Score=42.46  Aligned_cols=117  Identities=18%  Similarity=0.192  Sum_probs=62.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL   98 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~   98 (292)
                      +|.|||+|.+|+.++..|++.|. +++++|.+.-....+..       .|...+....+.+.  ..++-+...+..    
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~-------~g~~~~~~~~~~~~--~aDivi~~vp~~----   66 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLA-------AGAVTAETARQVTE--QADVIFTMVPDS----   66 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH-------CCCcccCCHHHHHh--cCCEEEEecCCH----
Confidence            58999999999999999999996 68888765321111111       12111111112221  234444443321    


Q ss_pred             hhHHHHHhcCC---CCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          99 RKVGALAVQGS---LTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        99 ~~~~~~i~~~~---~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      ......+....   ....+-.+||+++. .+.....+.+.+.+.++.|+++.+.+
T Consensus        67 ~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g  121 (291)
T TIGR01505        67 PQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSG  121 (291)
T ss_pred             HHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCC
Confidence            22222221100   01123456777544 44455567778888888888876543

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=92.83  E-value=0.13  Score=51.14  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +++++|+|+|+||+|..++..|+..|+ ++++++.
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR  410 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR  410 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            567899999999999999999999999 8998764

>PLN02712 arogenate dehydrogenase

Probab=92.81  E-value=0.88  Score=46.64  Aligned_cols=36  Identities=19%  Similarity=0.431  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .++..+|.|||+|.+|..+++.|...|. ++..+|.+
T Consensus       366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~  401 (667)
T PLN02712        366 DGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRS  401 (667)
T ss_pred             CCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECC
Confidence            4577899999999999999999999885 67777753

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=92.81  E-value=0.71  Score=44.43  Aligned_cols=35  Identities=26%  Similarity=0.418  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+++++|+|.|+ |++|.++++.|++.|. ++.++|.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r  210 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGA-KVVALTS  210 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            457889999987 8999999999999997 5666654

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=92.79  E-value=0.39  Score=46.45  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=24.2

Q ss_pred             cEEEEcCChHHHHHHH--HHH---HhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAE--MLT---RCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~--~La---~~Gvg~i~lvD~D~   51 (292)
                      ||+|||+|++|...+.  .++   .....++.|+|-|.
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~   39 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE   39 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH
Confidence            7999999999998666  454   22225899998654

linked to 3D####ucture

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=92.79  E-value=0.17  Score=46.21  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVEL   54 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~   54 (292)
                      .|+|||.|-.|..+|..|++.|. +++|+|.+.+.-
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence            48999999999999999999998 899999995543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=92.79  E-value=1.2  Score=41.25  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+.+|+|.|+|++|..+++.+...|+..+..+|.
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~  193 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            3679999999999999999999999987777664

>PLN02477 glutamate dehydrogenase

Probab=92.78  E-value=0.1  Score=50.24  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=32.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|+.++|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus       203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            6788999999999999999999999998766687754

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=92.78  E-value=0.16  Score=48.41  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|+|||.|-+|..+|..|++.|. +++++|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            489999999999999999999995 799999876

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=92.77  E-value=0.74  Score=42.73  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=48.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+ |.+|+++++.|...|...+.++|... ...++.                   .+....+..+++.+..+++
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~-~~~~~~-------------------~~~~~~~~~~~~~~~~Dl~   61 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLT-YAGNLM-------------------SLAPVAQSERFAFEKVDIC   61 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCc-cccchh-------------------hhhhcccCCceEEEECCCc
Confidence            47999986 78999999999999977676766321 000100                   0111111223445566676


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +.+.+...++.     .++|.||.+.
T Consensus        62 d~~~~~~~~~~-----~~~D~Vih~A   82 (355)
T PRK10217         62 DRAELARVFTE-----HQPDCVMHLA   82 (355)
T ss_pred             ChHHHHHHHhh-----cCCCEEEECC
Confidence            65666666632     2589888876

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.76  E-value=1.2  Score=41.98  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=28.1

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++++|+|.|. |-+|++++..|...|. +++.+|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r   53 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW   53 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence            4678999987 9999999999999885 5777774

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.75  E-value=0.26  Score=45.53  Aligned_cols=73  Identities=19%  Similarity=0.298  Sum_probs=50.3

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC--CCeEEEEe
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP--DVTIEVHN   92 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np--~v~v~~~~   92 (292)
                      ....+|+|+|-|-+|.+.|+....+| .+++++|...                         +||+++.-  .-++++.-
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~-------------------------~rl~~ldd~f~~rv~~~~  219 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNI-------------------------DRLRQLDDLFGGRVHTLY  219 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccC-CeeEEEecCH-------------------------HHHhhhhHhhCceeEEEE
Confidence            45789999999999999999999888 5688988643                         22322211  22333332


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                         ++..++++.+       .++|+||.++-
T Consensus       220 ---st~~~iee~v-------~~aDlvIgaVL  240 (371)
T COG0686         220 ---STPSNIEEAV-------KKADLVIGAVL  240 (371)
T ss_pred             ---cCHHHHHHHh-------hhccEEEEEEE
Confidence               2346777665       68999999874

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=92.75  E-value=1.9  Score=39.94  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=25.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++|+|.|+ |.+|+++++.|...|. +++.+|.
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r   32 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR   32 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence            47899986 8899999999999986 5666664

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=92.74  E-value=0.16  Score=46.87  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+|+|+|+|++|+.+|..|+++| .++++++.+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence            458999999999999999999999 5677877654

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=92.72  E-value=0.14  Score=48.70  Aligned_cols=35  Identities=37%  Similarity=0.459  Sum_probs=31.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|.|||+|.+|+.+|+.|...|+. +...|+
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            68999999999999999999999999985 556664

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.71  E-value=0.47  Score=44.12  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=28.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D   50 (292)
                      ..+|+|+|+|++|..+++.+.+ .|..+++.+|.+
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~  198 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKH  198 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            5799999999999999988886 577788888753

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=92.70  E-value=0.88  Score=42.17  Aligned_cols=80  Identities=15%  Similarity=0.173  Sum_probs=47.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ||+|.|+ |.+|+.+++.|...|...+..+|.... ..+.                   +.+..+.+..+++.+..++++
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~Dl~d   61 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTY-AGNL-------------------ESLADVSDSERYVFEHADICD   61 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCc-cchH-------------------HHHHhcccCCceEEEEecCCC
Confidence            6899986 999999999999998765555553110 0000                   111111122334555666766


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+.+...++.     .++|+||.+..
T Consensus        62 ~~~~~~~~~~-----~~~d~vih~A~   82 (352)
T PRK10084         62 RAELDRIFAQ-----HQPDAVMHLAA   82 (352)
T ss_pred             HHHHHHHHHh-----cCCCEEEECCc
Confidence            5666666532     25788887763

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.70  E-value=0.22  Score=45.49  Aligned_cols=35  Identities=23%  Similarity=0.287  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|+|+|-|. +|..++.+|...|. .+++.+.
T Consensus       156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs  191 (285)
T PRK10792        156 DTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHR  191 (285)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEEC
Confidence            68899999999999 99999999998774 6777653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.68  E-value=0.36  Score=46.60  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=30.5

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++++|+|+|.|++|-.+|+.|++.|. ++++.|.+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~   37 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK   37 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            467899999999999999999999996 58887754

>PRK06523 short chain dehydrogenase; Provisional

Probab=92.68  E-value=0.43  Score=42.05  Aligned_cols=37  Identities=19%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++++++|+|.|+ |++|..+++.|+..|. ++.+++.+.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~   43 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR   43 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence            577899999986 8999999999999997 588877653

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=92.67  E-value=0.38  Score=44.36  Aligned_cols=90  Identities=18%  Similarity=0.273  Sum_probs=51.0

Q ss_pred             hcCcEEEEcCChHHH-HHHHHHHHhC--CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          16 RTLTVIVVGVGGVGS-VTAEMLTRCG--IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        16 ~~~~V~vvG~GglGs-~va~~La~~G--vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +..||.|||+|+.+. ..+..+...+  +.-..++|.+.                  .|++.+++.    ++ +. ..+ 
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~------------------~~a~~~a~~----~~-~~-~~~-   56 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP------------------ERAEAFAEE----FG-IA-KAY-   56 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH------------------HHHHHHHHH----cC-CC-ccc-
Confidence            356899999998775 4777777766  35555555443                  344444432    21 11 111 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                            .+++++++.     .+.|+|+.|+.+. ....+...+.+.|+++
T Consensus        57 ------~~~~~ll~~-----~~iD~V~Iatp~~-~H~e~~~~AL~aGkhV   94 (342)
T COG0673          57 ------TDLEELLAD-----PDIDAVYIATPNA-LHAELALAALEAGKHV   94 (342)
T ss_pred             ------CCHHHHhcC-----CCCCEEEEcCCCh-hhHHHHHHHHhcCCEE
Confidence                  456666642     4589999998663 2223334455555543

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=92.65  E-value=0.5  Score=43.62  Aligned_cols=39  Identities=28%  Similarity=0.480  Sum_probs=32.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDKVELANM   57 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl   57 (292)
                      +|.|||+||-|+.++..|.+.|+.  ++..+|.|.-.+..+
T Consensus         2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~   42 (304)
T cd02201           2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKS   42 (304)
T ss_pred             eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcC
Confidence            699999999999999999999985  567888888555443

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=92.64  E-value=0.9  Score=41.11  Aligned_cols=115  Identities=15%  Similarity=0.126  Sum_probs=62.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEE---EEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLI---LFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~---lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ..||.|||||.+|..++..|..-+...+.   +.|.+.-...    .+-     +..++-.--+.|....|++-++.-..
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~----~~~-----~~~~~~~~l~~ll~~~~DlVVE~A~~   72 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPP----ALA-----GRVALLDGLPGLLAWRPDLVVEAAGQ   72 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHH----Hhh-----ccCcccCCHHHHhhcCCCEEEECCCH
Confidence            35899999999999999998764432222   3332210000    110     11111111223334557766665443


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC---CHHHHHHHHHHHHHhCC-ceeecCc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD---NFEARMTINMACNQLGQ-TWFESGV  147 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d---~~~~r~~in~~~~~~~~-p~i~~~~  147 (292)
                      ..-. +....+|+      .+.|+++.++.   +...+..+.+.|.+.+. -++.+|.
T Consensus        73 ~av~-e~~~~iL~------~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGA  123 (267)
T PRK13301         73 QAIA-EHAEGCLT------AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGA  123 (267)
T ss_pred             HHHH-HHHHHHHh------cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChH
Confidence            2221 22233442      47899887754   45677888888888775 4444443

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=92.62  E-value=0.16  Score=47.38  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      ..|++++|.|||+|.+|..+|.+|..+|+ ++.+.+
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~   47 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL   47 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence            57899999999999999999999999998 455544

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.57  E-value=0.19  Score=45.90  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      -++|.|||+|..|+.+|..|++.|. +++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3689999999999999999999996 68888865

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=92.56  E-value=0.12  Score=46.41  Aligned_cols=36  Identities=28%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|+.+||+|.|.|.+|+.+|+.|...|..-+.+.|.
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~   70 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS   70 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            578899999999999999999999999877768774

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=92.54  E-value=0.81  Score=41.67  Aligned_cols=33  Identities=24%  Similarity=0.214  Sum_probs=26.9

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++|+|.| +|.+|+.+++.|...|. ++++++.+
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~   37 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD   37 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            57899998 59999999999999986 45555543

>PRK09134 short chain dehydrogenase; Provisional

Probab=92.52  E-value=0.9  Score=40.04  Aligned_cols=88  Identities=17%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .+++++|.|+ |++|..+++.|++.|.. +.+++...                 ..+.+.+.+.++...  .++..+..+
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~-v~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~D   67 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFD-VAVHYNRS-----------------RDEAEALAAEIRALG--RRAVALQAD   67 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCC-----------------HHHHHHHHHHHHhcC--CeEEEEEcC
Confidence            4567888865 68999999999999974 44443211                 123334444454433  345566667


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+.+.++.....+.+.|+||.+..
T Consensus        68 l~d~~~~~~~~~~~~~~~~~iD~vi~~ag   96 (258)
T PRK09134         68 LADEAEVRALVARASAALGPITLLVNNAS   96 (258)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            76656665554332222356899888863

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=92.51  E-value=0.16  Score=47.54  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=31.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      ...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            3579999999999999999999996 7999998754

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.49  E-value=0.18  Score=45.71  Aligned_cols=33  Identities=21%  Similarity=0.440  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|||+|-+|+.++..|++.|. +++++|.+.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence            479999999999999999999997 788988654

>PLN00106 malate dehydrogenase

Probab=92.48  E-value=0.2  Score=46.64  Aligned_cols=36  Identities=25%  Similarity=0.494  Sum_probs=31.7

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      ...||+|+|+ |.+|+.++..|+..|. .+|.|+|-+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            4578999999 9999999999998886 6899999755

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=92.47  E-value=1.3  Score=38.57  Aligned_cols=92  Identities=22%  Similarity=0.251  Sum_probs=57.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +++.|+|.|-+|+.++..|+.+|.. +++--          |       -+..|..++++.+   -|.  ++.       
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~e-V~igs----------~-------r~~~~~~a~a~~l---~~~--i~~-------   51 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHE-VIIGS----------S-------RGPKALAAAAAAL---GPL--ITG-------   51 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCe-EEEec----------C-------CChhHHHHHHHhh---ccc--ccc-------
Confidence            4789999999999999999999933 33311          0       1112333333332   232  211       


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh-CCceeecCc
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL-GQTWFESGV  147 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~-~~p~i~~~~  147 (292)
                      .++.+..        ...|+||.++.-......+.++.-.. ++.+|+..+
T Consensus        52 ~~~~dA~--------~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tn   94 (211)
T COG2085          52 GSNEDAA--------ALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATN   94 (211)
T ss_pred             CChHHHH--------hcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCC
Confidence            1232222        57999999998877777776666544 476776644

>KOG1208|consensus

Probab=92.47  E-value=1.1  Score=41.68  Aligned_cols=90  Identities=23%  Similarity=0.367  Sum_probs=66.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+..+.++|.|+ .|+|.++|+.|++-| .++++...|.                  .|++.+++.|++-.+..++..+.
T Consensus        32 ~~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~------------------~~~~~~~~~i~~~~~~~~i~~~~   92 (314)
T KOG1208|consen   32 DLSGKVALVTGATSGIGFETARELALRG-AHVVLACRNE------------------ERGEEAKEQIQKGKANQKIRVIQ   92 (314)
T ss_pred             cCCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeCCH------------------HHHHHHHHHHHhcCCCCceEEEE
Confidence            344556666665 599999999999999 7787754432                  48899999999988888998999


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+.+.......+.|+.|...
T Consensus        93 lDLssl~SV~~fa~~~~~~~~~ldvLInNA  122 (314)
T KOG1208|consen   93 LDLSSLKSVRKFAEEFKKKEGPLDVLINNA  122 (314)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCccEEEeCc
Confidence            998877666655443333346788887654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=92.46  E-value=0.16  Score=48.46  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|.|||+|.+|..+++.|...|+. +..+|+
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp  147 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP  147 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            68999999999999999999999999984 666675

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.45  E-value=0.16  Score=46.45  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILF   47 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lv   47 (292)
                      .+++++|+|||. |-+|..++.+|.+.|. .+++.
T Consensus       155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga-tVtv~  188 (284)
T PRK14179        155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNA-TVTLT  188 (284)
T ss_pred             CCCCCEEEEECCCCcCcHHHHHHHHHCCC-EEEEE
Confidence            789999999999 9999999999999884 56654

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=92.45  E-value=1.6  Score=41.05  Aligned_cols=33  Identities=27%  Similarity=0.388  Sum_probs=29.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.+|+|.|+|++|..+++.+...|+.+++.+|.
T Consensus       186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~  218 (368)
T TIGR02818       186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDI  218 (368)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            578999999999999999888899888888764

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=92.43  E-value=0.46  Score=43.28  Aligned_cols=114  Identities=15%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             EEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccchhhH
Q psy2302          22 VVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKV  101 (292)
Q Consensus        22 vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~~~~  101 (292)
                      +||+|..|..++..|++.|. +++++|.+.-....+.       +.|...+....+.++  +.++-+...+.    ...+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~-------~~g~~~~~s~~~~~~--~advVil~vp~----~~~~   66 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAV-------AAGAQAAASPAEAAE--GADRVITMLPA----GQHV   66 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHH-------HcCCeecCCHHHHHh--cCCEEEEeCCC----hHHH
Confidence            58999999999999999996 6888886542211111       112222222222222  12444443332    1233


Q ss_pred             HHHHh---cCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302         102 GALAV---QGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus       102 ~~~i~---~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      .+.+.   .......+-.+||+++. .+.....+.+.+.++|+.++++-+++
T Consensus        67 ~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~G  118 (288)
T TIGR01692        67 ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSG  118 (288)
T ss_pred             HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCC
Confidence            33331   00011234457777764 35566778889999999999986664

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=92.43  E-value=0.41  Score=46.50  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=47.5

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHh-------CC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCC-
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRC-------GI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDV-   86 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~-------Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v-   86 (292)
                      .||.|+|+ |.+|+.+|..|+..       |+ .+|.++|-                  -+.|++.-+--|+.-. |.. 
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~------------------~~~~a~G~amDL~daa~~~~~  162 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSER------------------SKQALEGVAMELEDSLYPLLR  162 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcC------------------CcchhHHHHHHHHHhhhhhcC
Confidence            58999999 99999999999987       44 35666653                  2234444444444433 322 


Q ss_pred             eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          87 TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        87 ~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      ++..     .. .+++++        .++|+||.+...
T Consensus       163 ~v~i-----~~-~~ye~~--------kdaDiVVitAG~  186 (444)
T PLN00112        163 EVSI-----GI-DPYEVF--------QDAEWALLIGAK  186 (444)
T ss_pred             ceEE-----ec-CCHHHh--------CcCCEEEECCCC
Confidence            2211     11 334433        799999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
3guc_A	292	Human Ubiquitin-Activating Enzyme 5 In Complex With		1e-107
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		2e-11
1zfn_A	253	Structural Analysis Of Escherichia Coli Thif Length		5e-08
1zud_1	251	Structure Of This-Thif Protein Complex Length = 251		6e-08
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		5e-07
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		1e-06
3h5n_A	353	Crystal Structure Of E. Coli Mccb + Atp Length = 35		1e-06
3h5a_A	358	Crystal Structure Of E. Coli Mccb Length = 358		1e-06
1y8q_B	640	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		2e-06
3kyc_B	660	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		3e-06
3kyd_B	551	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		3e-06
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-04
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		3e-04
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		6e-04
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		7e-04
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		7e-04
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		8e-04
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		8e-04

>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp Length = 292

Iteration: 1
 Score =  384 bits (985), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/279 (68%), Positives = 215/279 (77%), Gaps = 10/279 (3%)
Query: 1   MALKRMGIVENYEHIRTLTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV +YE IRT              TAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct: 20  MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 79
Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALA---VQGSLTEG-PVD 116
           FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +            G L EG PVD
Sbjct: 80  FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 139
Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct: 140 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 199
Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
           ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct: 200 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 259
Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVH 275
           +KPNP CDD  C ++Q+E+       K  AA P+ +V+ 
Sbjct: 260 MKPNPQCDDRNCRKQQEEYK------KKVAALPKQEVIQ 292

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 23/217 (10%)
Query: 33  AEMLTRCGIGKLILFDYDKVELANMNRLFFQPD-QCGLSKVEAARITLQNINPDVTIEVH 91
           ++ L   G+G L L D+D V L+N+ R     D   G  KVE+AR  L  INP + I   
Sbjct: 47  SQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106
Query: 92  NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENA 151
           N  +        +A          DLVL C DN   R  +N  C    +    SG +   
Sbjct: 107 NALLDDAELAALIAEH--------DLVLDCTDNVAVRNQLNAGCFA-AKVPLVSGAAIR- 156
Query: 152 VSGHIQLII--PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNA 209
           + G I +     GE  C+ C   L   +++   T  + GV A      +G++       A
Sbjct: 157 MEGQITVFTYQDGEP-CYRCLSRLFGENAL---TCVEAGVMA----PLIGVIGSLQAMEA 208
Query: 210 LKKLLKFGEVSW--YLGYSALTDFFPKMKLKPNPSCD 244
           +K L  +G+ +    + Y A+T  F +MKL  NP C+
Sbjct: 209 IKMLAGYGKPASGKIVMYDAMTCQFREMKLMRNPGCE 245

>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif Length = 253

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 36  LTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94
           L   G+G L+L D D V L+N+ R + F  +     K + ++  L  +NPD+ +      
Sbjct: 49  LAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQL------ 102
Query: 95  ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSG 154
             L +++   A++ ++     D+VL C DN   R  IN AC  L        ++ +AV  
Sbjct: 103 TALQQRLTGEALKDAVAR--ADVVLDCTDNMATRQEINAACVALNTPL----ITASAVGF 156
Query: 155 HIQLII---PGESACFACAPP 172
             QL++   P E  C+ C  P
Sbjct: 157 GGQLMVLTPPWEQGCYRCLWP 177

>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex Length = 251

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 36  LTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN 94
           L   G+G L+L D D V L+N+ R + F  +     K + ++  L  +NPD+ +      
Sbjct: 47  LAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQL------ 100
Query: 95  ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSG 154
             L +++   A++ ++     D+VL C DN   R  IN AC  L        ++ +AV  
Sbjct: 101 TALQQRLTGEALKDAVAR--ADVVLDCTDNMATRQEINAACVALNTPL----ITASAVGF 154
Query: 155 HIQLII---PGESACFACAPP 172
             QL++   P E  C+ C  P
Sbjct: 155 GGQLMVLTPPWEQGCYRCLWP 175

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 42  GKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRK 100
           G + + D D +E +N+NR F F+P   G  K E A   +  +NP +T ++ ++      +
Sbjct: 446 GHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQ----ER 501
Query: 101 VG--ALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQL 158
           VG  +  + G      + LV + +DN EARM ++  C    +   ESG       G+ Q+
Sbjct: 502 VGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTL--GTKGNTQV 559
Query: 159 IIPGESACFACA--PP 172
           ++P  +  +  +  PP
Sbjct: 560 VVPHLTESYGSSQDPP 575

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 42  GKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRK 100
           G +++ D D +E +N+NR F F+P   G +K E A   +  +NPD+  +++      + K
Sbjct: 455 GYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKIN----AKIDK 510
Query: 101 VGALAVQ---GSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQ 157
           VG    +    S  E  +D V + +DN +AR  ++  C    +   ESG       G+ Q
Sbjct: 511 VGPETEEIFNDSFWES-LDFVTNALDNVDARTYVDRRCVFYRKPLLESGTL--GTKGNTQ 567
Query: 158 LIIPGESACFACA--PP 172
           +IIP  +  ++ +  PP
Sbjct: 568 VIIPRLTESYSSSRDPP 584

>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 35  MLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93
           +L   GIG++IL D D++E  N+ R + F  D  G +K E  +  L   N ++++     
Sbjct: 136 ILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL 195
Query: 94  NI---TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG-VSE 149
           NI   T L KV    +     + P +L+            +N  C +  Q +  +G V++
Sbjct: 196 NINDYTDLHKVPEADIWVVSADHPFNLI----------NWVNKYCVRANQPYINAGYVND 245
Query: 150 NAVSGHIQLIIPGESACFAC 169
            AV G   L +PG++ C+ C
Sbjct: 246 IAVFG--PLYVPGKTGCYEC 263

>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb Length = 358

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 35  MLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF 93
           +L   GIG++IL D D++E  N+ R + F  D  G +K E  +  L   N ++++     
Sbjct: 133 ILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL 192
Query: 94  NI---TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG-VSE 149
           NI   T L KV    +     + P +L+            +N  C +  Q +  +G V++
Sbjct: 193 NINDYTDLHKVPEADIWVVSADHPFNLI----------NWVNKYCVRANQPYINAGYVND 242
Query: 150 NAVSGHIQLIIPGESACFAC 169
            AV G   L +PG++ C+ C
Sbjct: 243 IAVFG--PLYVPGKTGCYEC 260

>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 24/144 (16%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVH--- 91
           L   G   + L D D ++++N+NR F FQ    G SK + A+ ++    P   I  +   
Sbjct: 36  LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95
Query: 92  ----NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGV 147
               ++N+   R+                LV++ +DN  AR  +N  C        ESG 
Sbjct: 96  IMNPDYNVEFFRQFI--------------LVMNALDNRAARNHVNRMCLAADVPLIESGT 141
Query: 148 SENAVSGHIQLIIPGESACFACAP 171
           +     G +  I  G + C+ C P
Sbjct: 142 A--GYLGQVTTIKKGVTECYECHP 163

>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 24/144 (16%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVH--- 91
           L   G   + L D D ++++N+NR F FQ    G SK + A+ ++    P   I  +   
Sbjct: 56  LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 115
Query: 92  ----NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGV 147
               ++N+   R+                LV++ +DN  AR  +N  C        ESG 
Sbjct: 116 IMNPDYNVEFFRQFI--------------LVMNALDNRAARNHVNRMCLAADVPLIESGT 161
Query: 148 SENAVSGHIQLIIPGESACFACAP 171
           +     G +  I  G + C+ C P
Sbjct: 162 A--GYLGQVTTIKKGVTECYECHP 183

>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 24/144 (16%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVH--- 91
           L   G   + L D D ++++N+NR F FQ    G SK + A+ ++    P   I  +   
Sbjct: 38  LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 97
Query: 92  ----NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGV 147
               ++N+   R+                LV++ +DN  AR  +N  C        ESG 
Sbjct: 98  IMNPDYNVEFFRQFI--------------LVMNALDNRAARNHVNRMCLAADVPLIESGT 143
Query: 148 SENAVSGHIQLIIPGESACFACAP 171
           +     G +  I  G + C+ C P
Sbjct: 144 A--GYLGQVTTIKKGVTECYECHP 165

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 36/154 (23%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTI-----E 89
           L   G  ++ + D D ++++N+NR F F+P   G  K E A   L +  P+  +     +
Sbjct: 59  LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 118
Query: 90  VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTIN-MACNQLGQTWFESGVS 148
           + +FN T  R+                +++  +D+  AR  IN M  + L    +E GV 
Sbjct: 119 IQDFNDTFYRQF--------------HIIVCGLDSIIARRWINGMLISLLN---YEDGVL 161
Query: 149 E------------NAVSGHIQLIIPGESACFACA 170
           +                G+ Q+I+PG +AC  C 
Sbjct: 162 DPSSIVPLIDGGTEGFKGNAQVILPGMTACIECT 195

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 36/153 (23%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTI-----E 89
           L   G  ++ + D D ++++N+NR F F+P   G  K E A   L +  P+  +     +
Sbjct: 430 LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 489
Query: 90  VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTIN-MACNQLGQTWFESGVS 148
           + +FN T  R+                +++  +D+  AR  IN M  + L    +E GV 
Sbjct: 490 IQDFNDTFYRQF--------------HIIVCGLDSIIARRWINGMLISLLN---YEDGVL 532
Query: 149 E------------NAVSGHIQLIIPGESACFAC 169
           +                G+ ++I+PG +AC  C
Sbjct: 533 DPSSIVPLIDGGTEGFKGNARVILPGMTACIEC 565

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 36/154 (23%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTI-----E 89
           L   G  ++ + D D ++++N+NR F F+P   G  K E A   L +  P+  +     +
Sbjct: 59  LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 118
Query: 90  VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTIN-MACNQLGQTWFESGVS 148
           + +FN T  R+                +++  +D+  AR  IN M  + L    +E GV 
Sbjct: 119 IQDFNDTFYRQF--------------HIIVCGLDSIIARRWINGMLISLLN---YEDGVL 161
Query: 149 E------------NAVSGHIQLIIPGESACFACA 170
           +                G+ ++I+PG +AC  C 
Sbjct: 162 DPSSIVPLIDGGTEGFKGNARVILPGMTACIECT 195

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 36/154 (23%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTI-----E 89
           L   G  ++ + D D ++++N+NR F F+P   G  K E A   L +  P+  +     +
Sbjct: 88  LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 147
Query: 90  VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTIN-MACNQLGQTWFESGVS 148
           + +FN T  R+                +++  +D+  AR  IN M  + L    +E GV 
Sbjct: 148 IQDFNDTFYRQF--------------HIIVCGLDSIIARRWINGMLISLLN---YEDGVL 190
Query: 149 E------------NAVSGHIQLIIPGESACFACA 170
           +                G+ ++I+PG +AC  C 
Sbjct: 191 DPSSIVPLIDGGTEGFKGNARVILPGMTACIECT 224

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 36/154 (23%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTI-----E 89
           L   G  ++ + D D ++++N+NR F F+P   G  K E A   L +  P+  +     +
Sbjct: 56  LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 115
Query: 90  VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTIN-MACNQLGQTWFESGVS 148
           + +FN T  R+                +++  +D+  AR  IN M  + L    +E GV 
Sbjct: 116 IQDFNDTFYRQF--------------HIIVCGLDSIIARRWINGMLISLLN---YEDGVL 158
Query: 149 E------------NAVSGHIQLIIPGESACFACA 170
           +                G+ ++I+PG +AC  C 
Sbjct: 159 DPSSIVPLIDGGTEGFKGNARVILPGMTACIECT 192

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 36/154 (23%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTI-----E 89
           L   G  ++ + D D ++++N+NR F F+P   G  K E A   L +  P+  +     +
Sbjct: 59  LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 118
Query: 90  VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTIN-MACNQLGQTWFESGVS 148
           + +FN T  R+                +++  +D+  AR  IN M  + L    +E GV 
Sbjct: 119 IQDFNDTFYRQF--------------HIIVCGLDSIIARRWINGMLISLLN---YEDGVL 161
Query: 149 E------------NAVSGHIQLIIPGESACFACA 170
           +                G+ ++I+PG +AC  C 
Sbjct: 162 DPSSIVPLIDGGTEGFKGNARVILPGMTACIECT 195

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 36/154 (23%)
Query: 36  LTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTI-----E 89
           L   G  ++ + D D ++++N+NR F F+P   G  K E A   L +  P+  +     +
Sbjct: 69  LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 128
Query: 90  VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTIN-MACNQLGQTWFESGVS 148
           + +FN T  R+                +++  +D+  AR  IN M  + L    +E GV 
Sbjct: 129 IQDFNDTFYRQF--------------HIIVCGLDSIIARRWINGMLISLLN---YEDGVL 171
Query: 149 E------------NAVSGHIQLIIPGESACFACA 170
           +                G+ ++I+PG +AC  C 
Sbjct: 172 DPSSIVPLIDGGTEGFKGNARVILPGMTACIECT 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	1e-119
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	2e-38
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	5e-31
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	6e-30
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-29
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	2e-29
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	2e-28
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	1e-26
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	5e-21
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	4e-20
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	5e-21
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	7e-20
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	2e-15
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score =  343 bits (883), Expect = e-119
 Identities = 197/279 (70%), Positives = 224/279 (80%), Gaps = 10/279 (3%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MALKRMGIV +YE IRT  V +VGVGGVGSVTAEMLTRCGIGKL+LFDYDKVELANMNRL
Sbjct: 20  MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 79

Query: 61  FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE----GPVD 116
           FFQP Q GLSKV+AA  TL+NINPDV  EVHN+NIT +        + S        PVD
Sbjct: 80  FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVD 139

Query: 117 LVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVA 176
           LVLSCVDNFEARMTIN ACN+LGQTW ESGVSENAVSGHIQLIIPGESACFACAPPL+VA
Sbjct: 140 LVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVA 199

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK 236
           ++IDEKTLK++GVCAASLPTTMG+VAG LVQN LK LL FG VS+YLGY+A+ DFFP M 
Sbjct: 200 ANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS 259

Query: 237 LKPNPSCDDSYCVQRQKEFNARPVEVKLEAAKPEAQVVH 275
           +KPNP CDD  C ++Q+E+  +       AA P+ +V+ 
Sbjct: 260 MKPNPQCDDRNCRKQQEEYKKKV------AALPKQEVIQ 292

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score =  115 bits (290), Expect = 5e-31
 Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 42/238 (17%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCGLSKVEAARI 77
           V+++G+GG+G+  A  L   G+G L+L D D V L+N+ R  LF   D     K + ++ 
Sbjct: 31  VLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTED-IDRPKSQVSQQ 89

Query: 78  TLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE--GPVDLVLSCVDNFEARMTINMAC 135
            L  +NPD+ +      +T            +L +     D+VL C DN   R  IN AC
Sbjct: 90  RLTQLNPDIQLTALQQRLT----------GEALKDAVARADVVLDCTDNMATRQEINAAC 139

Query: 136 NQLGQTWFESGVSENAV--SGHIQLIIPG-ESACFAC----APPLIVASSIDEKTLKKDG 188
             L        ++ +AV   G + ++ P  E  C+ C               E+  +  G
Sbjct: 140 VALNTPL----ITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQE-------PERNCRTAG 188

Query: 189 VCAASLPTTMGIVAGFLVQ--NALKKLLKFGEVSWYLG-YSALTDFFPKMKLKPNPSC 243
           V    +   MG      +Q   A+K L      +  L  +   +  +  + L+    C
Sbjct: 189 VVGP-VVGVMG-----TLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLALRRASGC 240

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score =  117 bits (295), Expect = 6e-30
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 10/173 (5%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           MAL R    E  E +    V+VVG GG+G    + L   G   + L D D ++++N+NR 
Sbjct: 1   MALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQ 60

Query: 61  F-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVL 119
           F FQ    G SK + A+ ++    P   I  ++ +I           Q         LV+
Sbjct: 61  FLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQ-------FILVM 113

Query: 120 SCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPP 172
           + +DN  AR  +N  C        ESG +     G +  I  G + C+ C P 
Sbjct: 114 NALDNRAARNHVNRMCLAADVPLIESGTA--GYLGQVTTIKKGVTECYECHPK 164

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score =  113 bits (286), Expect = 1e-29
 Identities = 48/256 (18%), Positives = 91/256 (35%), Gaps = 31/256 (12%)

Query: 13  EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCGLS 70
           + I+   V+++G G +G   +  L   G+ K+   D   V  +N  R  L+   D CG  
Sbjct: 30  DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFED-CGKP 88

Query: 71  KVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE-------GPVDLVLSCVD 123
           K E A  +L+ I P +       +I ++                        D++   VD
Sbjct: 89  KAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD 148

Query: 124 NFEARMTINMACNQLGQTW------FESGVSENAVSGHIQLIIPGESACFACAPPLIVAS 177
           + E+R   ++  N   +T       F+S +      G+       +  C+ C   +    
Sbjct: 149 SRESRWLPSLLSNIENKTVINAALGFDSYLV--MRHGNRDEQSSKQLGCYFCHDVVAPTD 206

Query: 178 SIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV---------SWYLGYSAL 228
           S+ ++TL  D +   + P    ++A  L    +  LL+               +     L
Sbjct: 207 SLTDRTL--DQMSTVTRPGV-AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFL 263

Query: 229 TDF-FPKMKLKPNPSC 243
            +F   K++      C
Sbjct: 264 HNFSILKLETPAYEHC 279

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score =  111 bits (279), Expect = 2e-29
 Identities = 68/242 (28%), Positives = 97/242 (40%), Gaps = 49/242 (20%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCGLSKVEAARI 77
           V++VG+GG+G   ++ L   G+G L L D+D V L+N+ R  L       G  KVE+AR 
Sbjct: 34  VLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDAT-VGQPKVESARD 92

Query: 78  TLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE--GPVDLVLSCVDNFEARMTINMAC 135
            L  INP + I   N  +              L       DLVL C DN   R  +N  C
Sbjct: 93  ALTRINPHIAITPVNALLD----------DAELAALIAEHDLVLDCTDNVAVRNQLNAGC 142

Query: 136 NQLGQTWFESGVSENAV--SGHIQLIIPGE-SACFAC---APPLIVASSIDEKTLKKDGV 189
                      VS  A+   G I +    +   C+ C          + ++       GV
Sbjct: 143 FAAKVPL----VSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENALTCVEA------GV 192

Query: 190 CAASLPTTMGIVAGFL--VQ--NALKKLLKFGEVSWYLG----YSALTDFFPKMKLKPNP 241
                   M  + G +  +Q   A+K L  +G+     G    Y A+T  F +MKL  NP
Sbjct: 193 --------MAPLIGVIGSLQAMEAIKMLAGYGKP--ASGKIVMYDAMTCQFREMKLMRNP 242

Query: 242 SC 243
            C
Sbjct: 243 GC 244

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score =  113 bits (284), Expect = 2e-28
 Identities = 50/258 (19%), Positives = 93/258 (36%), Gaps = 31/258 (12%)

Query: 11  NYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR--LFFQPDQCG 68
           N + I+   V+++G G +G   +  L   G+ K+   D   V  +N  R  L+   D CG
Sbjct: 321 NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFED-CG 379

Query: 69  LSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTE-------GPVDLVLSC 121
             K E A  +L+ I P +       +I ++                        D++   
Sbjct: 380 KPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLL 439

Query: 122 VDNFEARMTINMACNQLGQTW------FESGVSENAVSGHIQLIIPGESACFACAPPLIV 175
           VD+ E+R   ++  N   +T       F+S +      G+       +  C+ C   +  
Sbjct: 440 VDSRESRWLPSLLSNIENKTVINAALGFDSYLV--MRHGNRDEQSSKQLGCYFCHDVVAP 497

Query: 176 ASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV---------SWYLGYS 226
             S+ ++TL  D +C  + P    ++A  L    +  LL+               +    
Sbjct: 498 TDSLTDRTL--DQMCTVTRPGV-AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRG 554

Query: 227 ALTDF-FPKMKLKPNPSC 243
            L +F   K++      C
Sbjct: 555 FLHNFSILKLETPAYEHC 572

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score =  106 bits (267), Expect = 1e-26
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 30/177 (16%)

Query: 13  EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSK 71
             + T  V+V+G GG+G    + L   G  ++ + D D ++++N+NR F F+P   G  K
Sbjct: 36  FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 95

Query: 72  VEAARITLQNINPDVTIEVHN-----FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE 126
            E A   L +  P+  +  H      FN T  R+                +++  +D+  
Sbjct: 96  AEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQ--------------FHIIVCGLDSII 141

Query: 127 ARMTINMACNQLGQTWFESGVSENAV----------SGHIQLIIPGESACFACAPPL 173
           AR  IN     L           + V           G+ ++I+PG +AC  C   L
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLEL 198

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 92.2 bits (228), Expect = 5e-21
 Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 21/181 (11%)

Query: 9   VENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQ-C 67
            E    ++T  V+++G+ G+G   A+ +   G+  + +FD + V+LA+++  FF  ++  
Sbjct: 19  KEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDI 78

Query: 68  GLSKVEAARITLQNINPDVTIEVHN--FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF 125
           G  + +  R  L  +N  V + V +   ++T L +                +V +   + 
Sbjct: 79  GQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQF-------------QVVVATDTVSL 125

Query: 126 EARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFAC---APPLIVASSIDEK 182
           E ++ IN  C+  G  +  S      + G+  + +  E          P   + S I+  
Sbjct: 126 EDKVKINEFCHSSGIRFISSETR--GLFGNTFVDLGDEFTVLDPTGEEPRTGMVSDIEPD 183

Query: 183 T 183
            
Sbjct: 184 G 184

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 89.5 bits (221), Expect = 4e-20
 Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 10/168 (5%)

Query: 10  ENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLF-FQ 63
           +  + I    V +VG G +G    +     G+     G +++ D D +E +N+NR F F+
Sbjct: 418 DFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFR 477

Query: 64  PDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD 123
           P   G +K E A   +  +NPD+  +++     +  +   +          +D V + +D
Sbjct: 478 PKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWES--LDFVTNALD 535

Query: 124 NFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAP 171
           N +AR  ++  C    +   ESG       G+ Q+IIP  +  ++ + 
Sbjct: 536 NVDARTYVDRRCVFYRKPLLESGT--LGTKGNTQVIIPRLTESYSSSR 581

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 91.9 bits (228), Expect = 5e-21
 Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 30/175 (17%)

Query: 13  EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSK 71
             + T  V+V+G GG+G    + L   G  ++ + D D ++++N+NR F F+P   G  K
Sbjct: 407 FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 466

Query: 72  VEAARITLQNINPDVTIEVHN-----FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE 126
            E A   L +  P+  +  H      FN T  R+                +++  +D+  
Sbjct: 467 AEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQ--------------FHIIVCGLDSII 512

Query: 127 ARMTINMACNQLGQTWFESGVSENAV----------SGHIQLIIPGESACFACAP 171
           AR  IN     L           + V           G+ ++I+PG +AC  C  
Sbjct: 513 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTL 567

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score = 87.1 bits (216), Expect = 7e-20
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 20/131 (15%)

Query: 15  IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQC-GLSKVE 73
           +R   V++VG+ G+G+  A+ L   G+  L + D+++V   +    F       G ++ E
Sbjct: 34  LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAE 93

Query: 74  AARITLQNINPDVTIEVHNFNIT-----LLRKVGALAVQGSLTEGPVDLVLSCVDNFEAR 128
           A+    QN+NP V ++V   +I         +               D V     + +  
Sbjct: 94  ASLERAQNLNPMVDVKVDTEDIEKKPESFFTQ--------------FDAVCLTCCSRDVI 139

Query: 129 MTINMACNQLG 139
           + ++  C++  
Sbjct: 140 VKVDQICHKNS 150

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 9/161 (5%)

Query: 13  EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFF-QPDQCGLSK 71
           E + +  V ++     G+   + L   GIG   + D ++V   +    FF Q    G ++
Sbjct: 28  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87

Query: 72  VEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTI 131
            EAA   LQ +N DV+      +   L                  +V++        + +
Sbjct: 88  AEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCR------FTVVVATQLPESTSLRL 141

Query: 132 NMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPP 172
                               + G++++II       +    
Sbjct: 142 ADVLWNSQIPLLICRT--YGLVGYMRIIIKEHPVIESHPDN 180

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL 79
          + VVG G +G + A +L       + + D+D   LA +NR+     Q            L
Sbjct: 8  ICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKAL 67

Query: 80 QNINPDVTIEVHNFNIT 96
               D  I    F +T
Sbjct: 68 GGF--DAVISAAPFFLT 82

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 85/302 (28%)

Query: 20  VIVVGVGGVG-SV-TAEMLTRCGIGKLILF----------DYDKVELANMNRLFFQPDQC 67
           V++ GV G G +    ++     +   + F          +  +  L  + +L +Q D  
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 68  GLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVL------SC 121
             S+ + +      I+  +  E+      L  K      +  L      LVL        
Sbjct: 213 WTSRSDHSSNIKLRIH-SIQAELRRL---LKSKPY----ENCL------LVLLNVQNAKA 258

Query: 122 VDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPP-----LIVA 176
            + F      N++C  L  T F+  V+ + +S      I  +       P      L+  
Sbjct: 259 WNAF------NLSCKILLTTRFKQ-VT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 177 SSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSW----YLGYSALTDFF 232
                + L ++ V   + P  + I+A         + ++ G  +W    ++    LT   
Sbjct: 311 LDCRPQDLPRE-VLTTN-PRRLSIIA---------ESIRDGLATWDNWKHVNCDKLTTII 359

Query: 233 PKM---KLKPNPSCDDSYCVQRQ--KEFNARPVEVKLEAAKPEA--QVVHADNDWGEYHY 285
            +     L+P           R+     +  P    +    P     ++     W +   
Sbjct: 360 -ESSLNVLEPA--------EYRKMFDRLSVFPPSAHI----PTILLSLI-----WFDVIK 401

Query: 286 QV 287
             
Sbjct: 402 SD 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	100.0
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	100.0
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	100.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	100.0
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	100.0
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	100.0
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.96
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.28
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.2
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.04
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.03
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.98
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.97
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.95
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.89
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.87
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.84
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.81
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.72
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.69
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.65
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.62
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.6
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.54
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.49
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.49
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.49
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.46
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.42
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.33
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.32
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.2
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.18
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.17
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.15
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.15
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.14
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.13
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.09
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.08
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.06
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.03
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.01
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.95
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.95
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.92
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.89
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.88
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.83
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.82
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.82
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.81
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.81
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.8
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.76
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.72
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.71
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.71
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.7
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.68
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.67
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.65
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.64
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.63
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.62
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.62
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.61
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.61
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.59
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.58
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.58
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.57
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.56
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.53
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.52
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.52
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.51
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.51
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.5
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.49
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.48
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.47
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.47
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.47
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.47
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.45
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.44
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.44
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.43
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.4
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.4
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.4
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.39
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.39
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.38
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.38
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.37
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.37
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.37
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.37
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.36
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.35
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.35
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.35
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.34
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.34
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.33
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.32
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.32
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.31
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.31
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.3
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.3
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.3
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.3
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.3
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.29
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.29
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.29
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.27
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.27
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.27
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.27
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.26
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.26
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.26
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.25
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.24
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.24
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.24
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.24
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.23
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.23
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.22
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.22
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.21
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.2
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.19
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.19
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.19
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.18
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.17
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.17
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.16
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.16
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.14
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.14
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.13
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.13
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.13
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.12
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.12
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.12
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.11
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.11
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.1
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.09
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.07
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.07
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.06
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.06
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.06
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.06
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.06
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.05
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.05
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.04
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.04
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.03
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.03
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.02
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.02
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.02
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.02
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.01
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.99
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.98
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.97
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	95.97
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.96
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.96
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.96
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.96
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	95.95
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.93
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.93
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.93
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.93
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.93
1spx_A	278	Short-chain reductase family member (5L265); paral	95.92
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.92
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.92
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.91
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.91
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.9
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	95.9
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	95.9
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	95.89
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	95.88
3cxt_A	291	Dehydrogenase with different specificities; rossma	95.88
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.87
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.87
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.84
4dqx_A	277	Probable oxidoreductase protein; structural genomi	95.84
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.83
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.83
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.82
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.81
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.81
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	95.8
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.8
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.79
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.79
1xq1_A	266	Putative tropinone reducatse; structural genomics,	95.78
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.78
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	95.77
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.76
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.76
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.76
1xkq_A	280	Short-chain reductase family member (5D234); parra	95.76
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	95.75
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.74
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.74
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.74
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	95.73
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.73
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.73
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.73
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	95.72
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	95.72
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.71
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.71
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.7
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	95.7
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.7
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.7
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.7
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.69
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	95.69
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	95.68
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.68
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	95.68
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.68
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.67
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	95.67
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	95.67
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	95.67
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.66
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.64
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.64
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.63
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.63
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.62
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	95.62
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.62
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	95.62
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.61
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.61
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.61
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.59
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.59
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.58
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.58
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.58
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.58
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.58
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.57
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	95.56
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.55
1lnq_A	336	MTHK channels, potassium channel related protein;	95.54
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	95.54
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	95.54
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	95.53
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.53
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.53
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.52
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.52
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	95.51
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	95.51
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	95.51
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.5
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.5
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.5
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.49
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	95.49
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.47
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	95.45
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.45
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.45
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.44
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.44
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	95.44
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.44
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.42
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.41
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.39
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.39
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.39
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	95.39
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.38
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.38
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.38
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.37
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.37
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	95.37
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.37
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.34
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.34
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	95.34
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.33
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	95.32
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.31
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.3
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.29
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.29
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.29
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.28
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	95.28
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.27
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	95.26
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.25
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.25
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.24
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	95.24
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.24
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.23
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.23
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.19
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	95.18
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.18
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.17
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.16
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.14
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	95.14
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.13
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.12
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.12
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.11
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.1
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.1
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.09
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.09
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.06
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	95.06
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.05
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.04
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.04
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.02
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.01
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.01
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.0
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.97
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.95
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.95
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	94.95
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	94.94
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.92
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	94.91
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.91
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.91
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.91
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	94.89
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	94.87
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	94.87
1xhl_A	297	Short-chain dehydrogenase/reductase family member	94.87
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	94.86
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	94.84
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.81
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	94.8
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	94.79
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	94.79
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	94.79
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.78
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	94.78
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.77
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	94.76
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.75
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	94.75
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.73
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	94.73
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	94.73
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	94.72
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.72
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.7
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	94.67
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	94.66
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	94.66
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.64
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	94.63
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	94.63
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	94.62
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	94.6
4had_A	350	Probable oxidoreductase protein; structural genomi	94.59
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.59
4hb9_A	412	Similarities with probable monooxygenase; flavin,	94.58
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.57
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.57
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.57
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	94.55
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	94.53
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	94.52
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.51
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.49
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	94.49
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	94.47
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	94.46
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	94.45
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	94.45
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.43
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	94.43
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	94.42
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.42
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	94.41
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	94.39
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.38
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.38
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.35
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.34
1ydw_A	362	AX110P-like protein; structural genomics, protein	94.32
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.32
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	94.31
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	94.31
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	94.3
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.3
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	94.28
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.27
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.27
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.26
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	94.26
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	94.25
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.25
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.23
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.22
4h3v_A	390	Oxidoreductase domain protein; structural genomics	94.21
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	94.2
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	94.15
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	94.15
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.14
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.13
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.12
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	94.11
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	94.11
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	94.1
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	94.09
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.06
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	94.06
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	94.04
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.03
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.03
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	93.98
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	93.97
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	93.96
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	93.95
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.95
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.93
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	93.92
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	93.92
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	93.89
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.88
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	93.88
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.87
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.84
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	93.81
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.79
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	93.78
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.78
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	93.77
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.77
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	93.74
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	93.74
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	93.74
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	93.69
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	93.68
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.68
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	93.67
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.66
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	93.66
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	93.64
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	93.63
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.61
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	93.61
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	93.6
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.57
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	93.56
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.54
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	93.51
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	93.5
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	93.49
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	93.47
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.47
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	93.46
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	93.45

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=3.4e-61  Score=437.26  Aligned_cols=262  Identities=74%  Similarity=1.200  Sum_probs=207.4

Q ss_pred             CccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH
Q psy2302           1 MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         1 ~~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~   80 (292)
                      |+|++||++++|++|+++||+|||+||+||+++++|+++|||+|+|+|+|.|+++||+||+|+.+|+|++|+++++++|+
T Consensus        20 i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~   99 (292)
T 3h8v_A           20 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLR   99 (292)
T ss_dssp             ------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHH
T ss_pred             hcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHH
Confidence            67999998899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHh---cCCCC-CCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEE
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAV---QGSLT-EGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHI  156 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~---~~~~~-~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v  156 (292)
                      ++||+++++.+..++++.+++++++.   ..... ..++|+||||+||+++|.+||++|+++++|||++++.+.++.|++
T Consensus       100 ~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~~~~~Gqv  179 (292)
T 3h8v_A          100 NINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHI  179 (292)
T ss_dssp             HHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECTTSSEEEE
T ss_pred             hhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeecceeEEEE
Confidence            99999999999999986566665542   11110 147999999999999999999999999999999999876789999


Q ss_pred             EeecCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCCCeeEEEeCCCCCeeeee
Q psy2302         157 QLIIPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSWYLGYSALTDFFPKMK  236 (292)
Q Consensus       157 ~~~~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~~~~~~~d~~~~~~~~~~  236 (292)
                      .++.|+.++||+|++|..++.+.++.+|++.|+|+++++++++++|+|+|.||||+|+|.+++++++.||.++++|++++
T Consensus       180 ~~~~pg~t~Cy~Cl~p~~~~~~~~~~~~~~~gvc~~~l~~~~g~vgslqA~EalK~L~g~g~~~~ll~~D~~~~~~~~~~  259 (292)
T 3h8v_A          180 QLIIPGESACFACAPPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMS  259 (292)
T ss_dssp             EEECTTTSCCTTSSSCCCCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCSEEEEETTTTBCCEEC
T ss_pred             EEECCCCCCCHhhcCCccccccccccchhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCCCcEEEEe
Confidence            99999999999999987655544556788888887778999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCccccchhhhcccCccch
Q psy2302         237 LKPNPSCDDSYCVQRQKEFNARPVEV  262 (292)
Q Consensus       237 l~~~p~C~~~~C~~~~~~~~~~~~~~  262 (292)
                      +.|+|+||..+|+++++|+.......
T Consensus       260 ~~~~p~C~~~~Cg~~~~~~~~~~~~~  285 (292)
T 3h8v_A          260 MKPNPQCDDRNCRKQQEEYKKKVAAL  285 (292)
T ss_dssp             CCCCTTCSCHHHHHHHHHHHHC----
T ss_pred             cCCCcCcCccccCCchHhhhcccccC
Confidence            99999999778999999988766543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=100.00  E-value=2.3e-48  Score=347.37  Aligned_cols=230  Identities=22%  Similarity=0.431  Sum_probs=202.3

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|+.||. ++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+ |+.+|+|++|+++++++|+
T Consensus        14 ~l~~~g~-~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~   92 (251)
T 1zud_1           14 LLDDIAL-DGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLT   92 (251)
T ss_dssp             TSTTTHH-HHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHH
T ss_pred             chhhcCH-HHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHH
Confidence            3567998 9999999999999999999999999999999999999999999999999986 7999999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||+++++.+..+++. +++.+++       .++|+||+|+|++.+|.++|++|++.++|||.+++.  ++.|++.++.
T Consensus        93 ~~np~~~v~~~~~~~~~-~~~~~~~-------~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~--g~~G~v~~~~  162 (251)
T 1zud_1           93 QLNPDIQLTALQQRLTG-EALKDAV-------ARADVVLDCTDNMATRQEINAACVALNTPLITASAV--GFGGQLMVLT  162 (251)
T ss_dssp             HHCTTSEEEEECSCCCH-HHHHHHH-------HHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEE--BTEEEEEEEC
T ss_pred             HHCCCCEEEEEeccCCH-HHHHHHH-------hcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecc--ccceEEEEEc
Confidence            99999999999988876 6777766       579999999999999999999999999999999876  4799999899


Q ss_pred             CCC-CCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCCeeeeecc
Q psy2302         161 PGE-SACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDFFPKMKLK  238 (292)
Q Consensus       161 p~~-t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~~~~~~l~  238 (292)
                      |+. ++||+|+++.....   ...+...    ++++++.+++|+++|.|+||+|++.+.+ ++++.||..++.++++++.
T Consensus       163 p~~~~~c~~cl~~~~~~~---~~~~~~~----g~~~p~~~~~g~~~A~e~lk~l~g~~~~~~~~~~~d~~~~~~~~~~~~  235 (251)
T 1zud_1          163 PPWEQGCYRCLWPDNQEP---ERNCRTA----GVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLALR  235 (251)
T ss_dssp             TTCTTCCHHHHCC--------------C----CBCHHHHHHHHHHHHHHHHHHHHTCCCCCSEEEEEETTTTEEEEEECC
T ss_pred             cCCCCCcEEEeCCCCCCC---CCccccC----CchHHHHHHHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCEEEEEecC
Confidence            987 79999998753221   1233333    3488999999999999999999998876 7899999999999999999


Q ss_pred             CCCCCCCccccch
Q psy2302         239 PNPSCDDSYCVQR  251 (292)
Q Consensus       239 ~~p~C~~~~C~~~  251 (292)
                      ++|+|+  +|+.+
T Consensus       236 ~~p~C~--~C~~~  246 (251)
T 1zud_1          236 RASGCP--VCGGS  246 (251)
T ss_dssp             CCTTCT--TTCC-
T ss_pred             CCcCCC--ccCCC
Confidence            999999  89965

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=100.00  E-value=7.4e-47  Score=337.20  Aligned_cols=229  Identities=29%  Similarity=0.520  Sum_probs=201.9

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|++||. +.|++|++++|+|+|+||+|++++++|+++|+++|+|+|.|.|+++||+||+ |+.+|+|++|+++++++|+
T Consensus        17 ~l~~~g~-~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~   95 (249)
T 1jw9_B           17 ILRGFDF-DGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALT   95 (249)
T ss_dssp             TSTTTHH-HHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHH
T ss_pred             cccccCH-HHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHH
Confidence            3567998 9999999999999999999999999999999999999999999999999987 7899999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      ++||+++++.+..+++. +++.+++       .++|+||+|+|++++|..++++|++.++|+|++++.+  +.|++.++.
T Consensus        96 ~~np~~~v~~~~~~~~~-~~~~~~~-------~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g--~~g~v~~~~  165 (249)
T 1jw9_B           96 RINPHIAITPVNALLDD-AELAALI-------AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIR--MEGQITVFT  165 (249)
T ss_dssp             HHCTTSEEEEECSCCCH-HHHHHHH-------HTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEB--TEEEEEEEC
T ss_pred             HHCCCcEEEEEeccCCH-hHHHHHH-------hCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeecc--ceEEEEEEe
Confidence            99999999999988875 5666666       6899999999999999999999999999999987764  789999998


Q ss_pred             CCC-CCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302         161 PGE-SACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       161 p~~-t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l  237 (292)
                      |+. ++||+|+++.....   ...|...    ++++++++++|+++|.|+||+|++.+++  ++++.||+.++.|+++++
T Consensus       166 p~~~~~c~~c~~~~~~~~---~~~c~~~----g~~~~~~~~~g~~~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~  238 (249)
T 1jw9_B          166 YQDGEPCYRCLSRLFGEN---ALTCVEA----GVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKL  238 (249)
T ss_dssp             CCTTCCCTHHHHTTCCC----------C----CBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCceEEECCCCCcc---ccccccc----CCcchHHHHHHHHHHHHHHHHHhCCCCCccCeEEEEECCCCEEEEEec
Confidence            987 79999998753211   1223333    4488999999999999999999998875  689999999999999999


Q ss_pred             cCCCCCCCccccc
Q psy2302         238 KPNPSCDDSYCVQ  250 (292)
Q Consensus       238 ~~~p~C~~~~C~~  250 (292)
                      .|+|+||  +|+.
T Consensus       239 ~~~~~C~--~C~~  249 (249)
T 1jw9_B          239 MRNPGCE--VCGQ  249 (249)
T ss_dssp             CCCTTCT--TTC-
T ss_pred             CCCcCCC--CcCc
Confidence            9999999  8973

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=100.00  E-value=3.6e-46  Score=343.97  Aligned_cols=232  Identities=19%  Similarity=0.312  Sum_probs=195.7

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      +|+++|.    ++|+++||+|+|+||+||+++++|+++|||+|+|+|+|+|+.+||+||+ |+.+|+|++|+++++++|+
T Consensus        23 ll~~~g~----~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~   98 (340)
T 3rui_A           23 ILPDLNL----DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLK   98 (340)
T ss_dssp             TCTTCCH----HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHH
T ss_pred             hcchhhH----HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHH
Confidence            3555555    7999999999999999999999999999999999999999999999987 7899999999999999999


Q ss_pred             hhCCCCeEEEEecccc--------------chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302          81 NINPDVTIEVHNFNIT--------------LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG  146 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~--------------~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~  146 (292)
                      ++||+++++.+...+.              +.+++.+++       .++|+||+|+||+++|+++|++|+++++|+|.++
T Consensus        99 ~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l-------~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa  171 (340)
T 3rui_A           99 RIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALI-------KEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA  171 (340)
T ss_dssp             HHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHH-------HHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE
T ss_pred             HhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhh-------ccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Confidence            9999999999986551              124455555       6899999999999999999999999999999975


Q ss_pred             cccceeEEEEEeec-------CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC
Q psy2302         147 VSENAVSGHIQLII-------PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV  219 (292)
Q Consensus       147 ~~~~~~~G~v~~~~-------p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~  219 (292)
                       .  ++.|++.++.       |+.++||+|+++..+......+++.  ..|+ .++|+++++|+++|.|+||+|++++.+
T Consensus       172 -~--G~~G~l~v~~g~~~~~~~~~~~Cy~C~~~~~p~~~~~~~t~~--~~c~-v~~p~vg~igs~qA~E~lk~l~~~~~~  245 (340)
T 3rui_A          172 -L--GFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLD--QMST-VTRPGVAMMASSLAVELMTSLLQTKYS  245 (340)
T ss_dssp             -E--CSSEEEEEECCCCCSSCCCCBCCGGGGSSSCCCCCTTTCCCG--GGGG-CSCHHHHHHHHHHHHHHHHHHTSCCCT
T ss_pred             -e--cceEEEEEeecccccCCCCCCCeeeeCCCCCCcccccccccC--CCcc-eecchHHHHHHHHHHHHHHHHhCCCCC
Confidence             2  5899987753       5689999999875443332222211  1243 589999999999999999999998854


Q ss_pred             -------Cee-EEEeCCCCCeeeeecc--CCCCCCCccccchh
Q psy2302         220 -------SWY-LGYSALTDFFPKMKLK--PNPSCDDSYCVQRQ  252 (292)
Q Consensus       220 -------~~~-~~~d~~~~~~~~~~l~--~~p~C~~~~C~~~~  252 (292)
                             +++ ..||.++++|+++++.  ++|+|+  +||...
T Consensus       246 ~~~~~~~G~l~~~~d~~~~~f~~~~l~~~~~~~C~--~C~~~~  286 (340)
T 3rui_A          246 GSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCP--ACSPKV  286 (340)
T ss_dssp             TSSEETTEECCSEEEEETTTTEEEEECCBCCTTCT--TTCHHH
T ss_pred             ccccCccCcccEEEecCcCCceEEEecCCCCCCCC--CCCHHH
Confidence                   344 8899999999999998  599999  899865

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=1.4e-43  Score=337.94  Aligned_cols=233  Identities=21%  Similarity=0.338  Sum_probs=194.7

Q ss_pred             ChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCC
Q psy2302           7 GIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPD   85 (292)
Q Consensus         7 G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~   85 (292)
                      |...-|..|+++||+|||+||+||+++++|+++|||+|+|+|+|.|+++||+||+ |+.+|+|++|+++++++|+++||+
T Consensus        30 g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~  109 (434)
T 1tt5_B           30 STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN  109 (434)
T ss_dssp             CSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC
Confidence            4522345669999999999999999999999999999999999999999999986 799999999999999999999999


Q ss_pred             CeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh------------CCceeecCcccceeE
Q psy2302          86 VTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL------------GQTWFESGVSENAVS  153 (292)
Q Consensus        86 v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~------------~~p~i~~~~~~~~~~  153 (292)
                      ++++.+..+++. .+ .+++       .++|+||+|+||+++|.+||++|.+.            ++|||++++.+  +.
T Consensus       110 v~v~~~~~~i~~-~~-~~~~-------~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~~g--~~  178 (434)
T 1tt5_B          110 CNVVPHFNKIQD-FN-DTFY-------RQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEG--FK  178 (434)
T ss_dssp             CCCEEEESCGGG-BC-HHHH-------TTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEEET--TE
T ss_pred             CEEEEEecccch-hh-HHHh-------cCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEEecccc--ce
Confidence            999999988875 33 3444       78999999999999999999999984            99999999875  79


Q ss_pred             EEEEeecCCCCCccCCCCCCccCCC-------------------------------------cc---hh-----------
Q psy2302         154 GHIQLIIPGESACFACAPPLIVASS-------------------------------------ID---EK-----------  182 (292)
Q Consensus       154 G~v~~~~p~~t~C~~C~~~~~~~~~-------------------------------------~~---~~-----------  182 (292)
                      |++.++.|+.++||+|+++..+...                                     .+   ..           
T Consensus       179 G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~~~~~~~~~~~~d~d~~~~~~~v~~~a~~  258 (434)
T 1tt5_B          179 GNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLE  258 (434)
T ss_dssp             EEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTCTTCCCCTTCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHH
Confidence            9999999999999999864322111                                     00   00           


Q ss_pred             hhhhcCc--------------cCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCC-eeeeeccCCCCCCCc
Q psy2302         183 TLKKDGV--------------CAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDF-FPKMKLKPNPSCDDS  246 (292)
Q Consensus       183 ~~~~~~~--------------~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~-~~~~~l~~~p~C~~~  246 (292)
                      .+...|+              ..|+++++++++|+++|+|+||+|++.+++ .+++.||...+. ++++++.|+|+|+  
T Consensus       259 ~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l~~~l~~d~~~~~~~~~~~~~~~~~C~--  336 (434)
T 1tt5_B          259 RASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCP--  336 (434)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCCCSEEEEECSBSCEEEEECCCCCTTCT--
T ss_pred             HHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCcccCceEEEEcCCCceeEEEeccCCCCCC--
Confidence            0112232              235578999999999999999999999875 678889988876 5688999999999  


Q ss_pred             cccchh
Q psy2302         247 YCVQRQ  252 (292)
Q Consensus       247 ~C~~~~  252 (292)
                      +|+...
T Consensus       337 vC~~~~  342 (434)
T 1tt5_B          337 ACSQLP  342 (434)
T ss_dssp             TTCSSC
T ss_pred             ccCCCC
Confidence            899754

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=100.00  E-value=5.4e-44  Score=349.07  Aligned_cols=232  Identities=20%  Similarity=0.328  Sum_probs=195.1

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      +++++|.    ++|+++||+|||+||+||++|++|+++|||+|+|+|+|.|+.+||+||+ |+.+|+|++|+++++++|+
T Consensus       315 llp~~g~----ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~  390 (615)
T 4gsl_A          315 ILPDLNL----DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLK  390 (615)
T ss_dssp             TCTTCCH----HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHH
T ss_pred             hcchhhH----HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHH
Confidence            3455555    6999999999999999999999999999999999999999999999987 6999999999999999999


Q ss_pred             hhCCCCeEEEEecccc--------------chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302          81 NINPDVTIEVHNFNIT--------------LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG  146 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~--------------~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~  146 (292)
                      ++||+++++++...|.              +.+++.+++       .++|+||+|+|++++|.++|++|+++++|+|.++
T Consensus       391 ~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll-------~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa  463 (615)
T 4gsl_A          391 RIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALI-------KEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA  463 (615)
T ss_dssp             HHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHH-------HHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE
T ss_pred             hhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHHh-------hcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence            9999999999986551              124455555       6899999999999999999999999999999975


Q ss_pred             cccceeEEEEEeec-------CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC
Q psy2302         147 VSENAVSGHIQLII-------PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV  219 (292)
Q Consensus       147 ~~~~~~~G~v~~~~-------p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~  219 (292)
                       .  ++.|++.++.       |+.++||+|+++..+......+++.  ..|+ .++|+++++|+++|.|+||+|++.+.+
T Consensus       464 -l--G~~Gql~v~~g~~~~~~~~~~~CY~Cl~~~~P~~~~~~rtl~--~~C~-Vl~P~vgiigs~qA~EaLk~Ll~~g~~  537 (615)
T 4gsl_A          464 -L--GFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLD--QMCT-VTRPGVAMMASSLAVELMTSLLQTKYS  537 (615)
T ss_dssp             -E--CSSEEEEEECCC------CCCCCTTTSCSSCTTSCTTTTTTT--CTTC-CCCHHHHHHHHHHHHHHHHHHHSCCCT
T ss_pred             -c--cceeEEEEeecccccCCCCCCCceeeCCCCCCcccccccccc--cCcc-eecchHHHHHHHHHHHHHHHHhCCCCc
Confidence             2  5889887653       5689999999875443332222221  2354 689999999999999999999998854


Q ss_pred             -------Cee-EEEeCCCCCeeeeecc--CCCCCCCccccchh
Q psy2302         220 -------SWY-LGYSALTDFFPKMKLK--PNPSCDDSYCVQRQ  252 (292)
Q Consensus       220 -------~~~-~~~d~~~~~~~~~~l~--~~p~C~~~~C~~~~  252 (292)
                             +.+ +.||.+.++|+++++.  ++|+|+  +||...
T Consensus       538 ~~~~~~~G~l~~~~dg~~~~f~~~~l~~~~~p~C~--~C~~~v  578 (615)
T 4gsl_A          538 GSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCP--ACSPKV  578 (615)
T ss_dssp             TSSEETTEECCSEEEEETTTTEEEEECCCCCTTCT--TTCHHH
T ss_pred             ccCcCcCCCCcEEEeccCCcceEEeccCCCCCCCC--CCCHHH
Confidence                   343 7899999999999998  699999  899865

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=100.00  E-value=2.3e-41  Score=346.07  Aligned_cols=233  Identities=21%  Similarity=0.353  Sum_probs=197.7

Q ss_pred             CChHHHHHHH-hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhC
Q psy2302           6 MGIVENYEHI-RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus         6 ~G~~~~q~~L-~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      +|. ++|+++ +++||+|||+||+||+++++|+++|||+|+|+|+|+|+++||+||+ |+.+|||++|+++++++|+++|
T Consensus       400 ~g~-~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~n  478 (805)
T 2nvu_B          400 PST-ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV  478 (805)
T ss_dssp             CCS-HHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS
T ss_pred             CCH-HHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHC
Confidence            577 888877 9999999999999999999999999999999999999999999986 6999999999999999999999


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh------------CCceeecCcccce
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL------------GQTWFESGVSENA  151 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~------------~~p~i~~~~~~~~  151 (292)
                      |+++|+.+..+++. .+ .+++       .++|+||+|+|++++|.+||++|++.            ++|+|++++.+  
T Consensus       479 p~~~v~~~~~~~~~-~~-~~~~-------~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g--  547 (805)
T 2nvu_B          479 PNCNVVPHFNKIQD-FN-DTFY-------RQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEG--  547 (805)
T ss_dssp             TTCEEEEEESCGGG-SC-HHHH-------HTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEET--
T ss_pred             CCCEEEEEeccccc-cH-HHHH-------hcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEecccc--
Confidence            99999999999876 34 3454       68999999999999999999999984            99999999875  


Q ss_pred             eEEEEEeecCCCCCccCCCCCCccCCCc-------------------------------------c---h----------
Q psy2302         152 VSGHIQLIIPGESACFACAPPLIVASSI-------------------------------------D---E----------  181 (292)
Q Consensus       152 ~~G~v~~~~p~~t~C~~C~~~~~~~~~~-------------------------------------~---~----------  181 (292)
                      +.|++.++.|+.++||+|.++..+....                                     +   .          
T Consensus       548 ~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  627 (805)
T 2nvu_B          548 FKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKS  627 (805)
T ss_dssp             TEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHHCTTSTTCCCCTTCHHHHHHHHHHH
T ss_pred             CceeEEEECCCCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHhhcccccCCCCcccCCCCCHHHHHHHHHHH
Confidence            8999999999999999998642211100                                     0   0          


Q ss_pred             -hhhhhcCc--------------cCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCC-eeeeeccCCCCCC
Q psy2302         182 -KTLKKDGV--------------CAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDF-FPKMKLKPNPSCD  244 (292)
Q Consensus       182 -~~~~~~~~--------------~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~-~~~~~l~~~p~C~  244 (292)
                       ..+...|+              ..+.++++++++|+++|+|+||+|++.+.+ .+++.||...+. ++++++.|+|+|+
T Consensus       628 ~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~  707 (805)
T 2nvu_B          628 LERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCP  707 (805)
T ss_dssp             HHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSCEEEEECCCCCTTCT
T ss_pred             HHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhccccccCceEEecCCCCcccccccCCCCCCCC
Confidence             00112232              135578999999999999999999999875 667889998876 5688999999999


Q ss_pred             Cccccchh
Q psy2302         245 DSYCVQRQ  252 (292)
Q Consensus       245 ~~~C~~~~  252 (292)
                        +|+...
T Consensus       708 --~C~~~~  713 (805)
T 2nvu_B          708 --ACSQLP  713 (805)
T ss_dssp             --TTSCCC
T ss_pred             --eeCcee
Confidence              899744

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=100.00  E-value=1.5e-41  Score=331.74  Aligned_cols=227  Identities=21%  Similarity=0.334  Sum_probs=184.5

Q ss_pred             HHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          11 NYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        11 ~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      +|++|+++||+|||+||+||++|++|+++|||+|+|+|+|+|+++||+||+ |+.+|+|++|+++++++|+++||+++++
T Consensus       321 gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~  400 (598)
T 3vh1_A          321 NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDAT  400 (598)
T ss_dssp             CHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEE
T ss_pred             hHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEE
Confidence            468999999999999999999999999999999999999999999999987 7999999999999999999999999999


Q ss_pred             EEecccc--------------chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEE
Q psy2302          90 VHNFNIT--------------LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGH  155 (292)
Q Consensus        90 ~~~~~i~--------------~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~  155 (292)
                      .+..+|.              +.+++.+++       .++|+||+|+||+++|.++|++|+++++|+|.++ .  ++.|+
T Consensus       401 ~~~~~I~~pgh~i~~~~~~~l~~~~l~~li-------~~~DvVvdatDn~~tR~lin~~c~~~~~plI~aa-~--G~~Gq  470 (598)
T 3vh1_A          401 GVKLSIPMIGHKLVNEEAQHKDFDRLRALI-------KEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-L--GFDSY  470 (598)
T ss_dssp             EECCCCCCSSCCCCSHHHHHHHHHHHHHHH-------HHCSEEEECCSBGGGTHHHHHHHHHTTCEEEEEE-E--CSSEE
T ss_pred             EEeccccccCcccccccccccCHHHHHHHH-------hcCCEEEECCCCHHHHHHHHHHHHhcCCCEEEEE-E--CCccE
Confidence            9987751              124555665       5799999999999999999999999999999863 3  47888


Q ss_pred             EEeec---C----CCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCC-----C--Ce
Q psy2302         156 IQLII---P----GESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGE-----V--SW  221 (292)
Q Consensus       156 v~~~~---p----~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~-----~--~~  221 (292)
                      +.++.   |    +.++||+|+++..+......+++  ...| +.++|+++++|+++|.|+||+|+|.+.     +  +.
T Consensus       471 v~v~~g~~p~~~~~~~~Cy~Cl~~~~p~~~~~~~tl--d~~C-~Vl~p~vgvigslqA~Ealk~Llg~~~ap~~~~~~g~  547 (598)
T 3vh1_A          471 LVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTL--DQMC-TVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGD  547 (598)
T ss_dssp             EEEEEC--------CBCCTTTSCSSCSSSCTTTTTT--TBSC-CCSCTHHHHHHHHHHHHHHHHHHSCCCSSSSEETTEE
T ss_pred             EEEEccCCCccCCCCCCceeecCccCCCcccccccc--CCCC-CccCcHHHHHHHHHHHHHHHHHhCCCccccccccccc
Confidence            77663   3    36899999986543322111221  1123 248899999999999999999999876     1  22


Q ss_pred             e-EEEeCCCCCeeeeecc--CCCCCCCccccchh
Q psy2302         222 Y-LGYSALTDFFPKMKLK--PNPSCDDSYCVQRQ  252 (292)
Q Consensus       222 ~-~~~d~~~~~~~~~~l~--~~p~C~~~~C~~~~  252 (292)
                      + ..++.....|+.+++.  ++|+|+  +||...
T Consensus       548 l~~~l~g~l~~f~~~~l~~~r~~~C~--~Cg~~~  579 (598)
T 3vh1_A          548 IPHQIRGFLHNFSILKLETPAYEHCP--ACSPKV  579 (598)
T ss_dssp             CCSEEEEETTTTEEEEECCBCCTTCT--TTSHHH
T ss_pred             ccceeecccccceeEeccCCCCCCCC--CCchHH
Confidence            2 2455666678877755  999999  899653

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=1.9e-37  Score=288.56  Aligned_cols=223  Identities=21%  Similarity=0.284  Sum_probs=181.9

Q ss_pred             ccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhh
Q psy2302           4 KRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus         4 ~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      +.||. ++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||| ++.+|+|++|+++++++|+++
T Consensus        24 ~l~G~-~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~l  102 (346)
T 1y8q_A           24 RLWGL-EAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNL  102 (346)
T ss_dssp             HHHCH-HHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHT
T ss_pred             HhhCH-HHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhH
Confidence            44899 9999999999999999999999999999999999999999999999999987 588999999999999999999


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCC
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPG  162 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~  162 (292)
                      ||+++++.+..+++.  +..+++       .++|+||+|+|+..+|.+||++|+++++|||.+++.|  +.|++....+ 
T Consensus       103 np~v~v~~~~~~~~~--~~~~~~-------~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G--~~G~v~~d~~-  170 (346)
T 1y8q_A          103 NPMVDVKVDTEDIEK--KPESFF-------TQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFG--YHGYTFANLG-  170 (346)
T ss_dssp             CTTSEEEEECSCGGG--CCHHHH-------TTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEB--TEEEEEEECS-
T ss_pred             CCCeEEEEEecccCc--chHHHh-------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecc--cEEEEEEecC-
Confidence            999999999988764  234444       7899999999999999999999999999999998864  7898876553 


Q ss_pred             CCCccCCCCCC---------------------------------------------------------------------
Q psy2302         163 ESACFACAPPL---------------------------------------------------------------------  173 (292)
Q Consensus       163 ~t~C~~C~~~~---------------------------------------------------------------------  173 (292)
                      ..+|+.|....                                                                     
T Consensus       171 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~al~~f~  250 (346)
T 1y8q_A          171 EHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFR  250 (346)
T ss_dssp             EEEEEEECC-----------------------CCCEEEEEEECCCHHHHTSCCSCSHHHHHHHTTSCTHHHHHHHHHHHH
T ss_pred             CCCEEEcCCCCcCCCcccccCCCCCcccccCCceEEEeceeeccCHHHHhcCCchhhhhhhhcccccHHHHHHHHHHHHH
Confidence            45555543110                                                                     


Q ss_pred             -----ccCCCcch-----------hhhhhcC------------ccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEE
Q psy2302         174 -----IVASSIDE-----------KTLKKDG------------VCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLG  224 (292)
Q Consensus       174 -----~~~~~~~~-----------~~~~~~~------------~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~  224 (292)
                           .+....++           ..++..+            .+.+.++|+++++|+++|+|+||++++...| .+++.
T Consensus       251 ~~~~~~P~~~~~~~d~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~AiiGGi~aQEviK~it~k~~Pl~n~~~  330 (346)
T 1y8q_A          251 TDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFF  330 (346)
T ss_dssp             HHSSSCCCGGGHHHHHHHHHHHHHHHHHTTTCCGGGSCGGGGGSSCSBCHHHHHHHHHHHHHHHHHHHHTBSCCCCSEEE
T ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHhcCCccHHHHHHHHHHHHHHHHHhcCCCcccccEEE
Confidence                 00000000           0000001            1245689999999999999999999997776 78999


Q ss_pred             EeCCCCCeeeeeccC
Q psy2302         225 YSALTDFFPKMKLKP  239 (292)
Q Consensus       225 ~d~~~~~~~~~~l~~  239 (292)
                      ||.....+..+++.|
T Consensus       331 fD~~~~~~~~~~l~~  345 (346)
T 1y8q_A          331 FDGMKGNGIVECLGP  345 (346)
T ss_dssp             EETTTTEEEEECCCC
T ss_pred             EEccccceeEEecCC
Confidence            999998888887754

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=100.00  E-value=3.8e-36  Score=296.57  Aligned_cols=196  Identities=23%  Similarity=0.346  Sum_probs=163.7

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN   81 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~   81 (292)
                      ++.||. +.|++|+++||+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||+ |+.+|||++|+++++++|++
T Consensus         4 i~l~G~-e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~   82 (640)
T 1y8q_B            4 SRGLPR-ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ   82 (640)
T ss_dssp             --CCCH-HHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHT
T ss_pred             hhhcCH-HHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHH
Confidence            356999 9999999999999999999999999999999999999999999999999986 69999999999999999999


Q ss_pred             hCCCCeEEEEeccccchhhH-HHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeec
Q psy2302          82 INPDVTIEVHNFNITLLRKV-GALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLII  160 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~~~~-~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~  160 (292)
                      +||+++|+++..+++. +++ .+++       .++|+||+|+|++.+|.+||++|+++++|||.+|+.|  +.|++.++.
T Consensus        83 iNP~v~V~a~~~~i~~-~~~~~~~~-------~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G--~~G~v~vi~  152 (640)
T 1y8q_B           83 FYPKANIVAYHDSIMN-PDYNVEFF-------RQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAG--YLGQVTTIK  152 (640)
T ss_dssp             TCTTCEEEEEESCTTS-TTSCHHHH-------TTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEET--TEEEEEEEC
T ss_pred             HCCCCeEEEEecccch-hhhhHhhh-------cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEec--ccceEEEEC
Confidence            9999999999998875 332 3444       7899999999999999999999999999999998875  799999999


Q ss_pred             CCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCC
Q psy2302         161 PGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGE  218 (292)
Q Consensus       161 p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~  218 (292)
                      |+.++||+|.+..   .....+.|.-.+.  +  ......++  .|.++++.|.+...
T Consensus       153 p~~t~Cy~C~~~p---~~~~~p~Cti~~~--p--~~~~hci~--~a~~~f~~lf~~~~  201 (640)
T 1y8q_B          153 KGVTECYECHPKP---TQRTFPGATIRNT--P--SEPIHCIV--WAKYLFNQLFGEED  201 (640)
T ss_dssp             TTTSCCTTSSCCC---CCCCCCTTTTTSC--C--CSHHHHHH--HHHHHHHHHHSCCC
T ss_pred             CCCCCCcccCCCC---CCcccceeeecCC--C--CchHHHHH--HHHHHHHHHhCCcc
Confidence            9999999997632   1112233443332  1  12233344  46699999998643

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=4.4e-35  Score=285.87  Aligned_cols=201  Identities=15%  Similarity=0.076  Sum_probs=161.6

Q ss_pred             cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhC
Q psy2302           5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNIN   83 (292)
Q Consensus         5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~n   83 (292)
                      .||. ++|++|+++||+|||+||+|++++++|+++|||+|+|+|+|.|+++||+||| |+.+|+|++|+++++++|+++|
T Consensus        21 l~G~-~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN   99 (531)
T 1tt5_A           21 LWGD-HGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN   99 (531)
T ss_dssp             HHHH-HHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC
T ss_pred             hcCH-HHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC
Confidence            4888 9999999999999999999999999999999999999999999999999987 5889999999999999999999


Q ss_pred             CCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecCC-
Q psy2302          84 PDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPG-  162 (292)
Q Consensus        84 p~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p~-  162 (292)
                      |+++++.+...++.      ++++...++.++|+||+|+|+..+|.+||++|+++++|||.+++.|  +.|++.++.|+ 
T Consensus       100 p~v~v~~~~~~~~~------~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G--~~G~v~~~~p~~  171 (531)
T 1tt5_A          100 SDVSGSFVEESPEN------LLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYG--LVGYMRIIIKEH  171 (531)
T ss_dssp             TTSBCCEESSCHHH------HHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEET--TEEEEEEECSCE
T ss_pred             CCCeEEEeCCCcch------hhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecC--CeEEEEEEcCCc
Confidence            99999998866532      1122222347899999999999999999999999999999998875  79999887774 


Q ss_pred             ---------CCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhC
Q psy2302         163 ---------ESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLK  215 (292)
Q Consensus       163 ---------~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g  215 (292)
                               .++||+|++|...... ....+.........++.+.++++.+.|.|++|.+.+
T Consensus       172 ~~~d~~~~~~~~~lr~~~p~P~~~~-~~~~~~~~~~~~~~~~~~p~vv~~~~ale~~k~~~~  232 (531)
T 1tt5_A          172 PVIESHPDNALEDLRLDKPFPELRE-HFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETN  232 (531)
T ss_dssp             EESCCCCSSCCCCCCSSSCCHHHHH-HHHTCC-------CGGGSCHHHHHHHHHHHHTTTTC
T ss_pred             eeccCCCCCCCCcccccCCCCCchh-hhhccCcccccCCCcCCchHHHHHHHHHHHHHHhcC
Confidence                     3679999987531110 001111100011224566688999999999998773

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-33  Score=286.09  Aligned_cols=156  Identities=26%  Similarity=0.461  Sum_probs=144.7

Q ss_pred             cCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHH
Q psy2302           5 RMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARIT   78 (292)
Q Consensus         5 ~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~   78 (292)
                      .||. +.|++|+++||+|||+||+||+++++|+++||     |+|+|+|+|+|+.|||+||+ |+.+|||++|+++++++
T Consensus       414 l~G~-~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~  492 (1015)
T 3cmm_A          414 VFGL-DFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEA  492 (1015)
T ss_dssp             HHCH-HHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHH
T ss_pred             hcCH-HHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHHHHHHH
Confidence            3898 99999999999999999999999999999999     99999999999999999986 79999999999999999


Q ss_pred             HHhhCCCC--eEEEEeccccchhhH----HHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCccccee
Q psy2302          79 LQNINPDV--TIEVHNFNITLLRKV----GALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAV  152 (292)
Q Consensus        79 l~~~np~v--~v~~~~~~i~~~~~~----~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~  152 (292)
                      ++++||++  +|+++..+++. ++.    .+++       .++|+||+|+||+++|.++|++|+.+++|||++|+.|  +
T Consensus       493 l~~iNP~v~~~v~~~~~~i~~-~~~~~~~~~~~-------~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G--~  562 (1015)
T 3cmm_A          493 VCAMNPDLKGKINAKIDKVGP-ETEEIFNDSFW-------ESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLG--T  562 (1015)
T ss_dssp             HHHHCGGGTTTEEEECCCCSG-GGTTTSCHHHH-------HHCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEET--T
T ss_pred             HHHHCCCCcceEEEEecccCc-hhhhhccHhhh-------ccCCEEEECCCCHHHHHHHHHHHHHcCCcEEEeCCCc--c
Confidence            99999999  99999999975 332    2333       5799999999999999999999999999999999875  7


Q ss_pred             EEEEEeecCCCCCccCCCC
Q psy2302         153 SGHIQLIIPGESACFACAP  171 (292)
Q Consensus       153 ~G~v~~~~p~~t~C~~C~~  171 (292)
                      .|++.++.|+.++||+|..
T Consensus       563 ~G~v~v~~p~~t~cy~c~~  581 (1015)
T 3cmm_A          563 KGNTQVIIPRLTESYSSSR  581 (1015)
T ss_dssp             EEEEEEECTTTBCCGGGSC
T ss_pred             ccceEEEeCCCCCccCCCC
Confidence            8999999999999999984

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-29  Score=262.07  Aligned_cols=152  Identities=20%  Similarity=0.344  Sum_probs=138.0

Q ss_pred             ccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhh
Q psy2302           4 KRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus         4 ~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      +.||. ++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||+ ++.+|+|++|+++++++|+++
T Consensus        15 ~l~G~-~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~l   93 (1015)
T 3cmm_A           15 YVLGK-EAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAEL   93 (1015)
T ss_dssp             HHSCH-HHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTS
T ss_pred             hhcCH-HHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHH
Confidence            44999 9999999999999999999999999999999999999999999999999987 589999999999999999999


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP  161 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p  161 (292)
                      ||+++++.+...++. +    +       +.++|+||+|+| +..+|..||++|+++++|+|.+++.|  +.|++...  
T Consensus        94 NP~v~v~~~~~~l~~-~----~-------l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G--~~G~v~~d--  157 (1015)
T 3cmm_A           94 NAYVPVNVLDSLDDV-T----Q-------LSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRG--LFGNTFVD--  157 (1015)
T ss_dssp             CTTSCEEECCCCCCS-T----T-------GGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEET--TEEEEEEE--
T ss_pred             CCCCeEEEecCCCCH-H----H-------HhcCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEEecc--cEEEEEec--
Confidence            999999999887753 2    2       368999999999 99999999999999999999998864  78987542  


Q ss_pred             CCCCccCCCCCC
Q psy2302         162 GESACFACAPPL  173 (292)
Q Consensus       162 ~~t~C~~C~~~~  173 (292)
                       .++||+|+++.
T Consensus       158 -~~~~~~c~~~~  168 (1015)
T 3cmm_A          158 -LGDEFTVLDPT  168 (1015)
T ss_dssp             -CCSCEEESBSS
T ss_pred             -CCCceEEeeCC
Confidence             36899998753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.28  E-value=5.7e-06  Score=62.95  Aligned_cols=96  Identities=20%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      .++|+|+|+|++|..++..|...|..+++++|.+.                  .|.+.++      .+.+.  .....++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~------------------~~~~~~~------~~~~~--~~~~d~~   58 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL------------------AALAVLN------RMGVA--TKQVDAK   58 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH------------------HHHHHHH------TTTCE--EEECCTT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH------------------HHHHHHH------hCCCc--EEEecCC
Confidence            46899999999999999999999977899988642                  1222221      23333  3444555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG  146 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~  146 (292)
                      +.+.+.+.+       .++|+||.++... ....+.+.|.+.++++++..
T Consensus        59 ~~~~~~~~~-------~~~d~vi~~~~~~-~~~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           59 DEAGLAKAL-------GGFDAVISAAPFF-LTPIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             CHHHHHHHT-------TTCSEEEECSCGG-GHHHHHHHHHHTTCEEECCC
T ss_pred             CHHHHHHHH-------cCCCEEEECCCch-hhHHHHHHHHHhCCCEEEec
Confidence            545565554       6899999999543 34567778889999887643

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.20  E-value=1.7e-06  Score=77.67  Aligned_cols=80  Identities=25%  Similarity=0.323  Sum_probs=64.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++|+|+|+||+|..++..|+..|++++++++.+.                  .|++.+++.+....+.+++...+.
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~------------------~~a~~la~~~~~~~~~~~i~~~~~  185 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT------------------SRAQALADVINNAVGREAVVGVDA  185 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH------------------HHHHHHHHHHHHHHTSCCEEEECS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH------------------HHHHHHHHHHHhhcCCceEEEcCH
Confidence            46789999999999999999999999999999987542                  488889899988888777766541


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                           +++.+.+       .++|+||+||.
T Consensus       186 -----~~l~~~l-------~~~DiVInaTp  203 (283)
T 3jyo_A          186 -----RGIEDVI-------AAADGVVNATP  203 (283)
T ss_dssp             -----TTHHHHH-------HHSSEEEECSS
T ss_pred             -----HHHHHHH-------hcCCEEEECCC
Confidence                 3444444       57999999985

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.04  E-value=2.2e-05  Score=63.48  Aligned_cols=92  Identities=13%  Similarity=0.232  Sum_probs=58.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++.+.+|+|+|+|.+|..++..|...|. +++++|.+.-....+.+                       .....  ....
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~-----------------------~~g~~--~~~~   69 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS-----------------------EFSGF--TVVG   69 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT-----------------------TCCSE--EEES
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh-----------------------cCCCc--EEEe
Confidence            5677899999999999999999999997 79999976422111110                       01111  1112


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ  137 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~  137 (292)
                      ..++.+.+.+.      ...++|+||.++.+......+...+..
T Consensus        70 d~~~~~~l~~~------~~~~ad~Vi~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           70 DAAEFETLKEC------GMEKADMVFAFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             CTTSHHHHHTT------TGGGCSEEEECSSCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHc------CcccCCEEEEEeCCcHHHHHHHHHHHH
Confidence            22221222111      125799999999998877777777665

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.03  E-value=3.2e-05  Score=71.56  Aligned_cols=94  Identities=16%  Similarity=0.205  Sum_probs=68.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++.||+|+|+|.+|+.+++.|++.  .++++.|-+.                         +++.+..+.+.  ....++
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~~-------------------------~~~~~~~~~~~--~~~~d~   65 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVNN-------------------------ENLEKVKEFAT--PLKVDA   65 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCH-------------------------HHHHHHTTTSE--EEECCT
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcCH-------------------------HHHHHHhccCC--cEEEec
Confidence            456899999999999999999763  5788877432                         23333333433  334455


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESG  146 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~  146 (292)
                      ++.+.+.+.+       .++|+||+|+..+ .-..+.++|.+.|+.+++..
T Consensus        66 ~d~~~l~~~~-------~~~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           66 SNFDKLVEVM-------KEFELVIGALPGF-LGFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             TCHHHHHHHH-------TTCSEEEECCCGG-GHHHHHHHHHHHTCEEEECC
T ss_pred             CCHHHHHHHH-------hCCCEEEEecCCc-ccchHHHHHHhcCcceEeee
Confidence            5567777776       7899999999765 34578899999999998764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.98  E-value=1.6e-05  Score=72.49  Aligned_cols=85  Identities=9%  Similarity=0.131  Sum_probs=62.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++|+|+|+||+|..++..|++.|++++++++.+.               --..|++.+++.+.+..+ +++.... 
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~---------------~~~~~a~~la~~~~~~~~-~~~~~~~-  213 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD---------------DFYANAEKTVEKINSKTD-CKAQLFD-  213 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS---------------TTHHHHHHHHHHHHHHSS-CEEEEEE-
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC---------------chHHHHHHHHHHhhhhcC-CceEEec-
Confidence            46789999999999999999999999999999987541               002478888888877654 4555443 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                       +.+.+.+.+.+       .++|+||+||.
T Consensus       214 -~~~~~~l~~~l-------~~aDiIINaTp  235 (315)
T 3tnl_A          214 -IEDHEQLRKEI-------AESVIFTNATG  235 (315)
T ss_dssp             -TTCHHHHHHHH-------HTCSEEEECSS
T ss_pred             -cchHHHHHhhh-------cCCCEEEECcc
Confidence             22223444444       57999999985

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.97  E-value=6.8e-05  Score=59.31  Aligned_cols=96  Identities=22%  Similarity=0.164  Sum_probs=65.1

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ++.++|+|+|+|.+|..+++.|...|. +++++|.|.                  .+.+.    +++.  .+  ..+..+
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~------------------~~~~~----~~~~--~~--~~~~gd   56 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK------------------EKIEL----LEDE--GF--DAVIAD   56 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH------------------HHHHH----HHHT--TC--EEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH------------------HHHHH----HHHC--CC--cEEECC
Confidence            345789999999999999999999997 688999653                  12222    2221  23  334445


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                      .++.+.+.+.      ...++|+||.++++......+...+++.+.+.+
T Consensus        57 ~~~~~~l~~~------~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~i   99 (141)
T 3llv_A           57 PTDESFYRSL------DLEGVSAVLITGSDDEFNLKILKALRSVSDVYA   99 (141)
T ss_dssp             TTCHHHHHHS------CCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCE
T ss_pred             CCCHHHHHhC------CcccCCEEEEecCCHHHHHHHHHHHHHhCCceE
Confidence            5543433322      136899999999998887777888888775444

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.95  E-value=5.1e-05  Score=59.55  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=57.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++.++|+|+|+|.+|..+++.|.+.|. +++++|.+.-.                  .    +.+++.  ...  ....
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~------------------~----~~~~~~--~~~--~~~~   55 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEK------------------V----NAYASY--ATH--AVIA   55 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHH------------------H----HTTTTT--CSE--EEEC
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHH------------------H----HHHHHh--CCE--EEEe
Confidence            4667899999999999999999999996 68888865311                  1    111111  122  2222


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCH-HHHHHHHHHHHHhCCc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNF-EARMTINMACNQLGQT  141 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~-~~r~~in~~~~~~~~p  141 (292)
                      +.++.+.+.+.      ...++|+||.++.+. .....+...+.+.+.+
T Consensus        56 d~~~~~~l~~~------~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~   98 (144)
T 2hmt_A           56 NATEENELLSL------GIRNFEYVIVAIGANIQASTLTTLLLKELDIP   98 (144)
T ss_dssp             CTTCHHHHHTT------TGGGCSEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             CCCCHHHHHhc------CCCCCCEEEECCCCchHHHHHHHHHHHHcCCC
Confidence            33322222221      125799999999874 5555666777776644

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.87  E-value=2.1e-05  Score=68.15  Aligned_cols=91  Identities=10%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|||.|.+|...++.|..+|. +++++|++.-+                 .   +++ +.+ ...++  ....
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~-----------------~---l~~-l~~-~~~i~--~i~~   82 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSA-----------------E---INE-WEA-KGQLR--VKRK   82 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCH-----------------H---HHH-HHH-TTSCE--EECS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCH-----------------H---HHH-HHH-cCCcE--EEEC
Confidence            5789999999999999999999999996 79999875311                 1   111 111 12333  3343


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                      .... ++           +.++|+||.|+++.+.-..|.+.|. .++|+
T Consensus        83 ~~~~-~d-----------L~~adLVIaAT~d~~~N~~I~~~ak-~gi~V  118 (223)
T 3dfz_A           83 KVGE-ED-----------LLNVFFIVVATNDQAVNKFVKQHIK-NDQLV  118 (223)
T ss_dssp             CCCG-GG-----------SSSCSEEEECCCCTHHHHHHHHHSC-TTCEE
T ss_pred             CCCH-hH-----------hCCCCEEEECCCCHHHHHHHHHHHh-CCCEE
Confidence            3332 22           2689999999999998888888887 88875

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.84  E-value=0.00012  Score=68.91  Aligned_cols=103  Identities=20%  Similarity=0.333  Sum_probs=76.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhC-C-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCG-I-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~G-v-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +||+|+|+|++|..++..|++.| + .++++.|.+.                  .|++.+++.+....+ .++.....++
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~------------------~~~~~la~~l~~~~~-~~~~~~~~D~   62 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTL------------------SKCQEIAQSIKAKGY-GEIDITTVDA   62 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCH------------------HHHHHHHHHHHHTTC-CCCEEEECCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCH------------------HHHHHHHHHhhhhcC-CceEEEEecC
Confidence            48999999999999999999988 4 6899988543                  366666666655331 2345555666


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      ++.+.+.++++.     .++|+||.++.... ...+.+.|.+.++.+++.
T Consensus        63 ~d~~~l~~~l~~-----~~~DvVin~ag~~~-~~~v~~a~l~~g~~vvD~  106 (405)
T 4ina_A           63 DSIEELVALINE-----VKPQIVLNIALPYQ-DLTIMEACLRTGVPYLDT  106 (405)
T ss_dssp             TCHHHHHHHHHH-----HCCSEEEECSCGGG-HHHHHHHHHHHTCCEEES
T ss_pred             CCHHHHHHHHHh-----hCCCEEEECCCccc-ChHHHHHHHHhCCCEEEe
Confidence            666777777642     14899999987654 456778999999998874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.81  E-value=0.00013  Score=56.92  Aligned_cols=92  Identities=21%  Similarity=0.303  Sum_probs=57.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ..+|+|+|+|.+|..++..|...|. +++++|.+.                  .+.+    .+.+.. .+.  .+....+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~------------------~~~~----~~~~~~-~~~--~~~~d~~   57 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK------------------DICK----KASAEI-DAL--VINGDCT   57 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHH----HHHHHC-SSE--EEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH------------------HHHH----HHHHhc-CcE--EEEcCCC
Confidence            3589999999999999999999984 688988643                  1222    222211 222  2233333


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQ  140 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~  140 (292)
                      +.+.+.+.      ...++|+||.++.+......+...+.+.+.
T Consensus        58 ~~~~l~~~------~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~   95 (140)
T 1lss_A           58 KIKTLEDA------GIEDADMYIAVTGKEEVNLMSSLLAKSYGI   95 (140)
T ss_dssp             SHHHHHHT------TTTTCSEEEECCSCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHc------CcccCCEEEEeeCCchHHHHHHHHHHHcCC
Confidence            32322211      126899999999987766666666666543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.72  E-value=6.5e-05  Score=68.31  Aligned_cols=86  Identities=15%  Similarity=0.215  Sum_probs=60.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++|+|+|+||.|..++..|++.|++++++++.+.               --..|++.+++++....+ ..+.....
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~---------------~~~~~a~~la~~~~~~~~-~~v~~~~~  208 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD---------------DFFEKAVAFAKRVNENTD-CVVTVTDL  208 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS---------------THHHHHHHHHHHHHHHSS-CEEEEEET
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC---------------chHHHHHHHHHHhhhccC-cceEEech
Confidence            46789999999999999999999999999999987541               002478888888877653 44444331


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                        .+.+.+.+.+       .++|+||+||.-
T Consensus       209 --~~l~~~~~~l-------~~~DiIINaTp~  230 (312)
T 3t4e_A          209 --ADQHAFTEAL-------ASADILTNGTKV  230 (312)
T ss_dssp             --TCHHHHHHHH-------HHCSEEEECSST
T ss_pred             --HhhhhhHhhc-------cCceEEEECCcC
Confidence              1111123333       479999999863

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.65  E-value=0.00022  Score=57.26  Aligned_cols=94  Identities=12%  Similarity=0.056  Sum_probs=63.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++.+|+|+|+|.+|..+++.|...|. +++++|.|.-                 .|.+.+++.   ....+.  .+..+.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~-----------------~~~~~~~~~---~~~~~~--~i~gd~   58 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE-----------------DDIKQLEQR---LGDNAD--VIPGDS   58 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH-----------------HHHHHHHHH---HCTTCE--EEESCT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCh-----------------HHHHHHHHh---hcCCCe--EEEcCC
Confidence            46789999999999999999999985 6899997521                 022222221   122333  344455


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL  138 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~  138 (292)
                      ++.+.+.+.      .+.++|+||.++++...-..+...+++.
T Consensus        59 ~~~~~l~~a------~i~~ad~vi~~~~~d~~n~~~~~~a~~~   95 (153)
T 1id1_A           59 NDSSVLKKA------GIDRCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             TSHHHHHHH------TTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHc------ChhhCCEEEEecCChHHHHHHHHHHHHH
Confidence            543444332      1268999999999988777777777776

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.62  E-value=0.00028  Score=60.11  Aligned_cols=93  Identities=12%  Similarity=0.103  Sum_probs=62.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .+|+|+|+|.+|..+++.|...|. +++++|.|.                  .+++.    +.+. .++  ..+..+.++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~------------------~~~~~----l~~~-~~~--~~i~gd~~~   54 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKY-GVVIINKDR------------------ELCEE----FAKK-LKA--TIIHGDGSH   54 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC-CEEEEESCH------------------HHHHH----HHHH-SSS--EEEESCTTS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH------------------HHHHH----HHHH-cCC--eEEEcCCCC
Confidence            379999999999999999999997 688999654                  12222    2221 123  344555555


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHH-hCCce
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ-LGQTW  142 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~-~~~p~  142 (292)
                      .+.+.+.      ...++|+||.++++......+...+++ .+.+.
T Consensus        55 ~~~l~~a------~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~   94 (218)
T 3l4b_C           55 KEILRDA------EVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKR   94 (218)
T ss_dssp             HHHHHHH------TCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCE
T ss_pred             HHHHHhc------CcccCCEEEEecCCcHHHHHHHHHHHHHcCCCe
Confidence            4444432      126899999999998877777777765 34433

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.00067  Score=60.46  Aligned_cols=94  Identities=23%  Similarity=0.328  Sum_probs=76.3

Q ss_pred             HHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCC--eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          12 YEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIG--KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        12 q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      ...|++++|+|.|+ ||+|.++++.|++.|.+  ++.++|.+.                  .+.+.+++.+.+..+..++
T Consensus        28 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~   89 (287)
T 3rku_A           28 AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL------------------EKLEELKKTIDQEFPNAKV   89 (287)
T ss_dssp             HHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH------------------HHHHHHHHHHHHHCTTCEE
T ss_pred             hhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH------------------HHHHHHHHHHHhhCCCCeE
Confidence            35788999999975 79999999999999985  788877532                  3667777888888888899


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..+..++++.+.+..+++.....+.+.|++|.+..
T Consensus        90 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG  124 (287)
T 3rku_A           90 HVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAG  124 (287)
T ss_dssp             EEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            99999999888888888766656678999998754

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.54  E-value=0.00012  Score=65.34  Aligned_cols=75  Identities=19%  Similarity=0.314  Sum_probs=54.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++++|+|+||.|..++..|++.|+.++++++.+.                  .|++.+++.+..    ..+.... 
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~------------------~~a~~la~~~~~----~~~~~~~-  173 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM------------------AKALALRNELDH----SRLRISR-  173 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH------------------HHHHHHHHHHCC----TTEEEEC-
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH------------------HHHHHHHHHhcc----CCeeEee-
Confidence            57789999999999999999999999999999976432                  377777776654    1233322 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                       +   +++.    .     .++|+||+||..
T Consensus       174 -~---~~l~----~-----~~~DivInaTp~  191 (272)
T 3pwz_A          174 -Y---EALE----G-----QSFDIVVNATSA  191 (272)
T ss_dssp             -S---GGGT----T-----CCCSEEEECSSG
T ss_pred             -H---HHhc----c-----cCCCEEEECCCC
Confidence             1   1211    0     479999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.49  E-value=0.00043  Score=57.12  Aligned_cols=93  Identities=15%  Similarity=0.144  Sum_probs=58.8

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +.+.+|+|+|+|.+|..+++.|.+. |. +++++|.|.                  .|.+.    +++.  .+.+  ...
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~------------------~~~~~----~~~~--g~~~--~~g   89 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE------------------EAAQQ----HRSE--GRNV--ISG   89 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH------------------HHHHH----HHHT--TCCE--EEC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH------------------HHHHH----HHHC--CCCE--EEc
Confidence            4567999999999999999999999 86 688988654                  12222    2222  2332  222


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG  139 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~  139 (292)
                      +.++.+.+.+.     ....++|+||.++.+...-..+-..+++.+
T Consensus        90 d~~~~~~l~~~-----~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~  130 (183)
T 3c85_A           90 DATDPDFWERI-----LDTGHVKLVLLAMPHHQGNQTALEQLQRRN  130 (183)
T ss_dssp             CTTCHHHHHTB-----CSCCCCCEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHhc-----cCCCCCCEEEEeCCChHHHHHHHHHHHHHC
Confidence            33332222211     012689999999998776555555666554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.49  E-value=0.00065  Score=53.77  Aligned_cols=89  Identities=18%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +.+|+|+|+|.+|..+++.|...|. +++++|.|.-                  +++    .+++  ..+.  .+..+.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~------------------~~~----~~~~--~g~~--~i~gd~~   59 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRT------------------RVD----ELRE--RGVR--AVLGNAA   59 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHH------------------HHH----HHHH--TTCE--EEESCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHH------------------HHH----HHHH--cCCC--EEECCCC
Confidence            4689999999999999999999997 6999997651                  222    2222  2333  3444444


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL  138 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~  138 (292)
                      +.+.+...      ...++|+||.++++...-..+-..+++.
T Consensus        60 ~~~~l~~a------~i~~ad~vi~~~~~~~~n~~~~~~a~~~   95 (140)
T 3fwz_A           60 NEEIMQLA------HLECAKWLILTIPNGYEAGEIVASARAK   95 (140)
T ss_dssp             SHHHHHHT------TGGGCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHhc------CcccCCEEEEECCChHHHHHHHHHHHHH
Confidence            43333321      1257999999999876555455555554

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.49  E-value=0.00049  Score=65.66  Aligned_cols=92  Identities=14%  Similarity=0.147  Sum_probs=66.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|+|.|.+|...++.|...|. +++++|++.-+                    .+ +.+.+ ...  ++.+..
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~--------------------~~-~~l~~-~~~--i~~~~~   63 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP--------------------QF-TVWAN-EGM--LTLVEG   63 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH--------------------HH-HHHHT-TTS--CEEEES
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH--------------------HH-HHHHh-cCC--EEEEEC
Confidence            4678999999999999999999999994 79999975311                    01 11111 123  333443


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                      .... +++           .++|+||.+++++.....+.+.|+++++|+
T Consensus        64 ~~~~-~~l-----------~~~~lVi~at~~~~~n~~i~~~a~~~~i~v  100 (457)
T 1pjq_A           64 PFDE-TLL-----------DSCWLAIAATDDDTVNQRVSDAAESRRIFC  100 (457)
T ss_dssp             SCCG-GGG-----------TTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCc-ccc-----------CCccEEEEcCCCHHHHHHHHHHHHHcCCEE
Confidence            3332 221           589999999999988888999999999986

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.46  E-value=0.0003  Score=62.73  Aligned_cols=116  Identities=17%  Similarity=0.219  Sum_probs=67.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccccc--CCCCCccCcCCCCChHHHHHHHHHHhh-C-----CC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELA--NMNRLFFQPDQCGLSKVEAARITLQNI-N-----PD   85 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~s--Nl~R~~~~~~diG~~Ka~a~~~~l~~~-n-----p~   85 (292)
                      .|++++|+|||+|.+|...+..|...|. ++++||++.-+.-  .+. .+..  +-+. ++.  .....+. +     ..
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~~~l~~~~~-~l~~--~~~~-~~~--~~~~~~~~~~~~~~~~   82 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFG-KFIQ--NKDQ-PDY--REDAKRFINPNWDPTK   82 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHC-GGGC----------------CEEECTTCCTTS
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCCcchhHHHH-HHHh--cccc-ccc--cchhhccccccccccc
Confidence            4678999999999999999999999994 6999998652110  000 0000  0000 000  0000000 0     01


Q ss_pred             CeE-EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh---CCce
Q psy2302          86 VTI-EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL---GQTW  142 (292)
Q Consensus        86 v~v-~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~---~~p~  142 (292)
                      -.+ +.+...... +.+.    .... ..++|+||.|+++.+.-..|.+.|++.   ++|+
T Consensus        83 g~i~~~i~~~~~~-~dL~----~l~~-~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~V  137 (274)
T 1kyq_A           83 NEIYEYIRSDFKD-EYLD----LENE-NDAWYIIMTCIPDHPESARIYHLCKERFGKQQLV  137 (274)
T ss_dssp             CCCSEEECSSCCG-GGGC----CSST-TCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEE
T ss_pred             CCeeEEEcCCCCH-HHHh----hccc-CCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEE
Confidence            122 333333322 2210    0000 138999999999998889999999998   8876

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.42  E-value=0.00028  Score=63.08  Aligned_cols=76  Identities=11%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++|+|+|+||.|..++..|++.|+.++++++.+.                  .|++.+++.+....   .+.... 
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~------------------~~a~~la~~~~~~~---~~~~~~-  180 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF------------------AKAEQLAELVAAYG---EVKAQA-  180 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH------------------HHHHHHHHHHGGGS---CEEEEE-
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH------------------HHHHHHHHHhhccC---CeeEee-
Confidence            35789999999999999999999999999999987532                  37777777776542   233222 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                       +   +++          ..++|+||+||..-
T Consensus       181 -~---~~l----------~~~aDiIInaTp~g  198 (281)
T 3o8q_A          181 -F---EQL----------KQSYDVIINSTSAS  198 (281)
T ss_dssp             -G---GGC----------CSCEEEEEECSCCC
T ss_pred             -H---HHh----------cCCCCEEEEcCcCC
Confidence             1   111          15799999998653

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.33  E-value=9.2e-05  Score=66.16  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=34.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+++++|+|+|+||.|..++..|++.|++++++++.+.
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            46889999999999999999999999999999987654

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.32  E-value=0.00097  Score=63.67  Aligned_cols=100  Identities=13%  Similarity=0.233  Sum_probs=67.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhC-C--CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCG-I--GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~G-v--g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +.||+|+|+|++|+.++..|++.. +  ..++++|.+...               +   ++ .+.+     .+++  ...
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~---------------~---~~-~~~~-----g~~~--~~~   66 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK---------------V---DV-AQQY-----GVSF--KLQ   66 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS---------------C---CH-HHHH-----TCEE--EEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh---------------h---hH-Hhhc-----CCce--eEE
Confidence            578999999999999999999874 5  589999876531               1   01 1211     2343  344


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGV  147 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~  147 (292)
                      .++. +|+.+.+...   +.+.|+||++...... ..|-++|.+.|+-+++...
T Consensus        67 ~Vda-dnv~~~l~aL---l~~~DvVIN~s~~~~~-l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           67 QITP-QNYLEVIGST---LEENDFLIDVSIGISS-LALIILCNQKGALYINAAT  115 (480)
T ss_dssp             CCCT-TTHHHHTGGG---CCTTCEEEECCSSSCH-HHHHHHHHHHTCEEEESSC
T ss_pred             eccc-hhHHHHHHHH---hcCCCEEEECCccccC-HHHHHHHHHcCCCEEECCC
Confidence            4554 5554433211   1345999998766543 5678899999999999866

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.20  E-value=0.00081  Score=57.79  Aligned_cols=89  Identities=9%  Similarity=0.103  Sum_probs=62.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +.+|+|+|+|.+|..+++.|...|.  ++++|.|.-                  +.    +.+.   +.+.  .+..+.+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~------------------~~----~~~~---~~~~--~i~gd~~   59 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV--FVLAEDENV------------------RK----KVLR---SGAN--FVHGDPT   59 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGG------------------HH----HHHH---TTCE--EEESCTT
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHH------------------HH----HHHh---cCCe--EEEcCCC
Confidence            5689999999999999999999887  889886541                  11    1222   3333  4455555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQ  140 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~  140 (292)
                      +.+.+.+.      .+.++|.||.++++...-..+...+++.+.
T Consensus        60 ~~~~l~~a------~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~   97 (234)
T 2aef_A           60 RVSDLEKA------NVRGARAVIVDLESDSETIHCILGIRKIDE   97 (234)
T ss_dssp             CHHHHHHT------TCTTCSEEEECCSCHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHhc------CcchhcEEEEcCCCcHHHHHHHHHHHHHCC
Confidence            43433322      136899999999998777777778888765

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.00091  Score=64.01  Aligned_cols=37  Identities=14%  Similarity=0.047  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .++.++|+|+|+|++|..++..|++.|--+++++|.+
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~   56 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT   56 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECC
Confidence            5678899999999999999999999843479998854

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.0011  Score=57.67  Aligned_cols=91  Identities=21%  Similarity=0.244  Sum_probs=65.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC-CeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD-VTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~-v~v~~~   91 (292)
                      .+++++++|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+.+.++. .++..+
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~   64 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSK------------------QNLEKVHDEIMRSNKHVQEPIVL   64 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCH------------------HHHHHHHHHHHHHCTTSCCCEEE
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHhccccCcceEE
Confidence            456788899876 7999999999999997 688877532                  3566777778777655 567778


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|++|.+..
T Consensus        65 ~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg   96 (250)
T 3nyw_A           65 PLDITDCTKADTEIKDIHQKYGAVDILVNAAA   96 (250)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred             eccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            88888766666555432222357899998764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.15  E-value=0.0005  Score=61.87  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .++.++|+|+|+|++|..++..|++.|+.+++++|.+
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3568899999999999999999999999999998754

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.15  E-value=0.0028  Score=60.33  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.++|+|+|+|++|..++..|++.|. +++++|.+.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCH
Confidence            45789999999999999999999995 588888653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.14  E-value=0.00067  Score=53.88  Aligned_cols=37  Identities=14%  Similarity=0.115  Sum_probs=32.3

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+...++|+|+|+|++|..+++.|...|+. ++++|.+
T Consensus        17 ~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~   53 (144)
T 3oj0_A           17 RKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN   53 (144)
T ss_dssp             HHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC
T ss_pred             HhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            344589999999999999999999999987 9998854

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.13  E-value=0.00045  Score=61.80  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=33.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+++++|+|+|+||.|..++..|...|++++++++.+
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3678999999999999999999999999999998754

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.09  E-value=0.0011  Score=58.18  Aligned_cols=36  Identities=22%  Similarity=0.454  Sum_probs=32.5

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +++ +|+|+|+|+.|..++..|.+.|+.+++++|.+.
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            456 999999999999999999999999999988653

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.08  E-value=0.0005  Score=61.04  Aligned_cols=36  Identities=22%  Similarity=0.521  Sum_probs=32.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+++++|+|+|+|++|..++..|...|+ +++++|.+
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~  161 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT  161 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence            4678999999999999999999999998 99998754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.06  E-value=0.0013  Score=62.92  Aligned_cols=97  Identities=19%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ..||+|+|+|.+|..+|+.|...|. .+++||.|.-                  +.    +++.+.   ..+..+...-+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~------------------~~----~~~~~~---~~~~~i~Gd~~   56 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENN-DITIVDKDGD------------------RL----RELQDK---YDLRVVNGHAS   56 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHH------------------HH----HHHHHH---SSCEEEESCTT
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH------------------HH----HHHHHh---cCcEEEEEcCC
Confidence            3589999999999999999998874 5999998761                  11    223322   23445555555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh-CCceeec
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL-GQTWFES  145 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~-~~p~i~~  145 (292)
                      +++-+.+.      -.+++|++|.+|++.++-..+-..+++. +.+.+.+
T Consensus        57 ~~~~L~~A------gi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~ia  100 (461)
T 4g65_A           57 HPDVLHEA------GAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIA  100 (461)
T ss_dssp             CHHHHHHH------TTTTCSEEEECCSCHHHHHHHHHHHHHHHCCSSEEE
T ss_pred             CHHHHHhc------CCCcCCEEEEEcCChHHHHHHHHHHHHhcCCcccee
Confidence            54444432      1378999999999998888888888775 6665544

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.03  E-value=0.0019  Score=56.47  Aligned_cols=90  Identities=20%  Similarity=0.266  Sum_probs=67.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..+..++..+..
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~   66 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDG------------------ERLRAAESALRQRFPGARLFASVC   66 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhcCCceEEEEeC
Confidence            56788899975 7999999999999997 477877532                  356667777877777777888888


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+..+++.....+.+.|++|.+..
T Consensus        67 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg   96 (265)
T 3lf2_A           67 DVLDALQVRAFAEACERTLGCASILVNNAG   96 (265)
T ss_dssp             CTTCHHHHHHHHHHHHHHHCSCSEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888777766555433223357899998763

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.01  E-value=0.0014  Score=57.05  Aligned_cols=90  Identities=23%  Similarity=0.347  Sum_probs=64.5

Q ss_pred             HHhcCcEEEEcC-C-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-G-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .+++++|+|.|+ | |+|.++++.|++.|.. +.++|.+.                  .+.+.+.+.+++.. ..++..+
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~l~~~~-~~~~~~~   78 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYHE------------------RRLGETRDQLADLG-LGRVEAV   78 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESCH------------------HHHHHHHHHHHTTC-SSCEEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCCH------------------HHHHHHHHHHHhcC-CCceEEE
Confidence            477899999999 7 8999999999999964 77777542                  34555566665543 3577888


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|+||.+..
T Consensus        79 ~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           79 VCDVTSTEAVDALITQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EeCCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            88888777776655432222357899998764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.95  E-value=0.0021  Score=54.81  Aligned_cols=39  Identities=21%  Similarity=0.240  Sum_probs=29.5

Q ss_pred             HHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          11 NYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        11 ~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+.+|++++|+|.|+ |++|.++++.|+..|. ++++++.+
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~   54 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRN   54 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECC
Confidence            456899999999998 9999999999999996 68887753

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.95  E-value=0.0055  Score=53.56  Aligned_cols=87  Identities=15%  Similarity=0.258  Sum_probs=67.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..+...+..+.
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~   67 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRRE------------------ENVNETIKEIRAQYPDAILQPVV   67 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhhCCCceEEEEe
Confidence            467788888876 7999999999999996 577776432                  35666777888888888888888


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.    +.+.|++|.+..
T Consensus        68 ~D~~~~~~~~~~~~~----~g~id~lv~nAg   94 (267)
T 3t4x_A           68 ADLGTEQGCQDVIEK----YPKVDILINNLG   94 (267)
T ss_dssp             CCTTSHHHHHHHHHH----CCCCSEEEECCC
T ss_pred             cCCCCHHHHHHHHHh----cCCCCEEEECCC
Confidence            888887777776653    357999998763

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.92  E-value=0.0026  Score=57.90  Aligned_cols=37  Identities=22%  Similarity=0.454  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++..||.|+|+|.+|+.++..|+..|.++++|+|-+
T Consensus         4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~   40 (324)
T 3gvi_A            4 SMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIA   40 (324)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            4567899999999999999999999998889998854

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.89  E-value=0.002  Score=57.34  Aligned_cols=80  Identities=16%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|+| .||+|..++..|++.|.. ++++|.+.                  .|++.+++.+... +.+.+.  ..
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~------------------~~~~~l~~~~~~~-~~~~~~--~~  174 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKL------------------DKAQAAADSVNKR-FKVNVT--AA  174 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSH------------------HHHHHHHHHHHHH-HTCCCE--EE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCH------------------HHHHHHHHHHHhc-CCcEEE--Ee
Confidence            5788999999 999999999999999985 88887532                  3566666666543 233322  23


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.+       ..+|+||.++.
T Consensus       175 D~~~~~~~~~~~-------~~~DvlVn~ag  197 (287)
T 1lu9_A          175 ETADDASRAEAV-------KGAHFVFTAGA  197 (287)
T ss_dssp             ECCSHHHHHHHT-------TTCSEEEECCC
T ss_pred             cCCCHHHHHHHH-------HhCCEEEECCC
Confidence            444445555554       56899999985

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.88  E-value=0.0031  Score=59.33  Aligned_cols=91  Identities=18%  Similarity=0.379  Sum_probs=64.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +.+|+|+|+|.+|..+++.|...|+ .+++||.|.-                  +++.    +++.  .+.  .+..+.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~------------------~v~~----~~~~--g~~--vi~GDat   56 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPD------------------HIET----LRKF--GMK--VFYGDAT   56 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHH------------------HHHH----HHHT--TCC--CEESCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH------------------HHHH----HHhC--CCe--EEEcCCC
Confidence            4689999999999999999999996 5889998751                  2222    2222  222  3444555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQ  140 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~  140 (292)
                      +.+.+...      -+.++|+||.++++...-..+-..+++.+.
T Consensus        57 ~~~~L~~a------gi~~A~~viv~~~~~~~n~~i~~~ar~~~p   94 (413)
T 3l9w_A           57 RMDLLESA------GAAKAEVLINAIDDPQTNLQLTEMVKEHFP   94 (413)
T ss_dssp             CHHHHHHT------TTTTCSEEEECCSSHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHhc------CCCccCEEEECCCChHHHHHHHHHHHHhCC
Confidence            43433322      136899999999999888888888888774

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.83  E-value=0.012  Score=53.56  Aligned_cols=81  Identities=15%  Similarity=0.264  Sum_probs=59.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .+++++|+|.|+ |++|+++++.|+.. |..+++++|.+.                  .|...+++.+.    ...++.+
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~------------------~~~~~~~~~~~----~~~v~~~   75 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE------------------LKQSEMAMEFN----DPRMRFF   75 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH------------------HHHHHHHHHHC----CTTEEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh------------------hhHHHHHHHhc----CCCEEEE
Confidence            467899999985 99999999999999 988899887543                  23333333332    2356677


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+.+.+       .++|+||.+..
T Consensus        76 ~~Dl~d~~~l~~~~-------~~~D~Vih~Aa  100 (344)
T 2gn4_A           76 IGDVRDLERLNYAL-------EGVDICIHAAA  100 (344)
T ss_dssp             ECCTTCHHHHHHHT-------TTCSEEEECCC
T ss_pred             ECCCCCHHHHHHHH-------hcCCEEEECCC
Confidence            77887766666654       68999998874

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.82  E-value=0.0044  Score=54.06  Aligned_cols=91  Identities=22%  Similarity=0.284  Sum_probs=64.3

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.| .||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..+..++..+.
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~   70 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSS------------------EGLEASKAAVLETAPDAEVLTTV   70 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhhcCCceEEEEE
Confidence            46778888886 57999999999999996 577776432                  24555566676665566777888


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        71 ~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  101 (267)
T 1iy8_A           71 ADVSDEAQVEAYVTATTERFGRIDGFFNNAG  101 (267)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888777776655432222357899998753

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.82  E-value=0.005  Score=54.00  Aligned_cols=91  Identities=15%  Similarity=0.198  Sum_probs=62.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+++.....++..+.
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~   89 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTV------------------GNIEELAAECKSAGYPGTLIPYR   89 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTTCSSEEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCh------------------HHHHHHHHHHHhcCCCceEEEEE
Confidence            477888999965 7999999999999996 577776432                  24455556666655445677778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        90 ~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           90 CDLSNEEDILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            8888766666554321112357999998764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.81  E-value=0.0023  Score=56.58  Aligned_cols=76  Identities=17%  Similarity=0.196  Sum_probs=52.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .++.++|+|+|+|+.|..++..|++.| .+++++|.+.                  .|++.+++.+....   .+...+ 
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~~------------------~~a~~l~~~~~~~~---~~~~~~-  172 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTF------------------SKTKELAERFQPYG---NIQAVS-  172 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSH------------------HHHHHHHHHHGGGS---CEEEEE-
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCH------------------HHHHHHHHHccccC---CeEEee-
Confidence            357889999999999999999999999 8999987543                  36666666664421   222221 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                       +   +.+    .    . .++|+||.++...
T Consensus       173 -~---~~~----~----~-~~~DivIn~t~~~  191 (272)
T 1p77_A          173 -M---DSI----P----L-QTYDLVINATSAG  191 (272)
T ss_dssp             -G---GGC----C----C-SCCSEEEECCCC-
T ss_pred             -H---HHh----c----c-CCCCEEEECCCCC
Confidence             1   110    0    0 3799999998764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.81  E-value=0.014  Score=48.06  Aligned_cols=90  Identities=17%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.|+ |++|..+++.|...| -++++++.+.-....+                        ..+.  ++.+..++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~------------------------~~~~--~~~~~~D~   55 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSE------------------------GPRP--AHVVVGDV   55 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCSS------------------------SCCC--SEEEESCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhcccc------------------------cCCc--eEEEEecC
Confidence            368999998 999999999999999 5788887653211000                        0122  34555666


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCH----------HHHHHHHHHHHHhCC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF----------EARMTINMACNQLGQ  140 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~----------~~r~~in~~~~~~~~  140 (292)
                      ++.+.+.+.+       .++|+||.+....          .....+-+++.+.++
T Consensus        56 ~~~~~~~~~~-------~~~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~  103 (206)
T 1hdo_A           56 LQAADVDKTV-------AGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGV  103 (206)
T ss_dssp             TSHHHHHHHH-------TTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHH-------cCCCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCC
Confidence            6666666665       5789999886532          223455567777665

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.80  E-value=0.004  Score=56.18  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                  .|.+.+.+.+....+..++..+..
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~   66 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQ------------------DSIDKALATLEAEGSGPEVMGVQL   66 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHTCGGGEEEEEC
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcCCCCeEEEEEC
Confidence            46778999976 8999999999999997 577776532                  356666677777766667888888


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        67 Dl~~~~~v~~~~~~~~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           67 DVASREGFKMAADEVEARFGPVSILCNNAG   96 (319)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            888877776655432223357899998764

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.76  E-value=0.004  Score=55.22  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+++|+|+|+||.|..++..|...|+.++++++.+
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            45799999999999999999999999999997643

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.72  E-value=0.013  Score=49.26  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=64.1

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+ |.+|+.+++.|...| -++++++.+.-....+                         .  -.++.+..+++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-------------------------~--~~~~~~~~Dl~   56 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKIE-------------------------N--EHLKVKKADVS   56 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCCC-------------------------C--TTEEEECCCTT
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchhc-------------------------c--CceEEEEecCC
Confidence            68999995 999999999999999 5788877653221111                         1  23556677777


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCH-----------HHHHHHHHHHHHhCC-ceeecC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNF-----------EARMTINMACNQLGQ-TWFESG  146 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~-----------~~r~~in~~~~~~~~-p~i~~~  146 (292)
                      +.+.+.+.+       .++|+||.+....           .....+-++|.+.++ .+|+.+
T Consensus        57 d~~~~~~~~-------~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S  111 (227)
T 3dhn_A           57 SLDEVCEVC-------KGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVG  111 (227)
T ss_dssp             CHHHHHHHH-------TTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CHHHHHHHh-------cCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            767777766       5799999887532           233456677877776 455443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.71  E-value=0.004  Score=53.41  Aligned_cols=92  Identities=17%  Similarity=0.281  Sum_probs=60.4

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCCeEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDVTIEV   90 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v~v~~   90 (292)
                      ..|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+++.. +.+.+..
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~   70 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTE------------------ASLAEVSDQIKSAGQPQPLIIA   70 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTTSCCCEEEE
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCH------------------HHHHHHHHHHHhcCCCCceEEE
Confidence            3578889999976 7999999999999997 588877542                  35555666666654 4555544


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..+++.+.+..+++.....+.+.|++|.+..
T Consensus        71 ~d~d~~~~~~~~~~~~~~~~~~g~id~lv~nAg  103 (247)
T 3i1j_A           71 LNLENATAQQYRELAARVEHEFGRLDGLLHNAS  103 (247)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             eccccCCHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            444335555555444322222357899997754

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.71  E-value=0.0045  Score=53.37  Aligned_cols=89  Identities=21%  Similarity=0.246  Sum_probs=62.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..  .++..+.
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~   64 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINA------------------EAAEAVAKQIVADG--GTAISVA   64 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CEEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            467889999976 7999999999999996 477877532                  35555666666554  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        65 ~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag   95 (253)
T 3qiv_A           65 VDVSDPESAKAMADRTLAEFGGIDYLVNNAA   95 (253)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888767766655432222357999998763

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.70  E-value=0.0042  Score=54.21  Aligned_cols=89  Identities=16%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .|++|+++|.|++   |+|.++|+.|++.|. ++.+.|.+.                  .+.+.+++.+.+.. ..++..
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~------------------~~~~~~~~~~~~~~-~~~~~~   62 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKE------------------RSRKELEKLLEQLN-QPEAHL   62 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSG------------------GGHHHHHHHHGGGT-CSSCEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC-CCcEEE
Confidence            4688999999974   899999999999996 688877532                  13344555666654 345566


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +..++++.+.....++.....+.+.|++|...
T Consensus        63 ~~~Dv~~~~~v~~~~~~~~~~~G~iD~lvnnA   94 (256)
T 4fs3_A           63 YQIDVQSDEEVINGFEQIGKDVGNIDGVYHSI   94 (256)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence            77788776776655544333457899988764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.68  E-value=0.0096  Score=51.65  Aligned_cols=89  Identities=21%  Similarity=0.322  Sum_probs=60.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+....+..++..+..
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~   65 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNR------------------EKLEAAASRIASLVSGAQVDIVAG   65 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCCCCeEEEEEc
Confidence            56778889875 7999999999999996 677777432                  244455555655433446777778


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+. .|+||.+..
T Consensus        66 D~~~~~~v~~~~~~~~~~~g-id~lv~~Ag   94 (260)
T 2z1n_A           66 DIREPGDIDRLFEKARDLGG-ADILVYSTG   94 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC-CSEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHhcC-CCEEEECCC
Confidence            88876766655543222234 899998764

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.67  E-value=0.0042  Score=56.46  Aligned_cols=36  Identities=25%  Similarity=0.522  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ++..||.|+|+|.+|+.++..|+..|++++.|+|-+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~   38 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIA   38 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            346799999999999999999999998889998864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.65  E-value=0.011  Score=51.08  Aligned_cols=38  Identities=24%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..+..++|.|||+|.+|+.+|..|++.|. ++++.|.+.
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~   52 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDP   52 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            47889999999999999999999999996 688888653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.64  E-value=0.0061  Score=55.49  Aligned_cols=37  Identities=27%  Similarity=0.490  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +....||.|+|+|.+|+.+|..|+..|...++|+|-+
T Consensus        11 ~~~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           11 VIMRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3345699999999999999999999998569999965

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.63  E-value=0.023  Score=51.07  Aligned_cols=110  Identities=16%  Similarity=0.051  Sum_probs=68.9

Q ss_pred             HHHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC---
Q psy2302          10 ENYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD---   85 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~---   85 (292)
                      ..+..++.++|+|.|+ |.+|+.++..|...|. +++.+|...-.               .   ....+.+....+.   
T Consensus        18 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---------------~---~~~~~~~~~~~~~~~~   78 (351)
T 3ruf_A           18 TQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTG---------------H---QYNLDEVKTLVSTEQW   78 (351)
T ss_dssp             HHHHHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC---------------C---HHHHHHHHHTSCHHHH
T ss_pred             HhhCCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCC---------------c---hhhhhhhhhccccccC
Confidence            3455678899999995 8999999999999994 67776643210               0   0111222222110   


Q ss_pred             CeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCH-----------------HHHHHHHHHHHHhCC-ceeec
Q psy2302          86 VTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF-----------------EARMTINMACNQLGQ-TWFES  145 (292)
Q Consensus        86 v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~-----------------~~r~~in~~~~~~~~-p~i~~  145 (292)
                      -.++.+..++++.+.+.+.+       .++|+||.+....                 .....+-++|.+.++ .+|+.
T Consensus        79 ~~~~~~~~Dl~d~~~~~~~~-------~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~  149 (351)
T 3ruf_A           79 SRFCFIEGDIRDLTTCEQVM-------KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYA  149 (351)
T ss_dssp             TTEEEEECCTTCHHHHHHHT-------TTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CceEEEEccCCCHHHHHHHh-------cCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            24566777787767777665       6899999887531                 111335677778776 45544

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.62  E-value=0.0082  Score=53.25  Aligned_cols=81  Identities=15%  Similarity=0.134  Sum_probs=53.4

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGI--GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gv--g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +..||.|||+|.+|+.++..|++.|+  .+++++|.+.                  .|.+.++++    . .+.  ..  
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~------------------~~~~~l~~~----~-gi~--~~--   54 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL------------------DKLDFFKEK----C-GVH--TT--   54 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS------------------HHHHHHHHT----T-CCE--EE--
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH------------------HHHHHHHHH----c-CCE--Ee--
Confidence            35789999999999999999999996  3788877543                  133333321    1 222  21  


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC  135 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~  135 (292)
                           .+..+.+       .++|+||.|+.....+..+.++.
T Consensus        55 -----~~~~~~~-------~~aDvVilav~p~~~~~vl~~l~   84 (280)
T 3tri_A           55 -----QDNRQGA-------LNADVVVLAVKPHQIKMVCEELK   84 (280)
T ss_dssp             -----SCHHHHH-------SSCSEEEECSCGGGHHHHHHHHH
T ss_pred             -----CChHHHH-------hcCCeEEEEeCHHHHHHHHHHHH
Confidence                 1222333       67999999997666666666554

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.62  E-value=0.0029  Score=55.25  Aligned_cols=92  Identities=9%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +...+|.|||+|.+|+.++..|++.|...++++|.+.                  .|++.+++.+     .+.+  ..  
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~------------------~~~~~~~~~~-----g~~~--~~--   60 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE------------------ESARELAQKV-----EAEY--TT--   60 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH------------------HHHHHHHHHT-----TCEE--ES--
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH------------------HHHHHHHHHc-----CCce--eC--
Confidence            4567999999999999999999999976678877432                  1333332221     1221  11  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHH--hCCceeec
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQ--LGQTWFES  145 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~--~~~p~i~~  145 (292)
                           ++.+.       ..++|+||.|+.+...+..+.++...  .+..+++.
T Consensus        61 -----~~~~~-------~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~  101 (266)
T 3d1l_A           61 -----DLAEV-------NPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHT  101 (266)
T ss_dssp             -----CGGGS-------CSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             -----CHHHH-------hcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEEC
Confidence                 11111       26799999999887766666554322  34555554

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.61  E-value=0.0083  Score=51.46  Aligned_cols=88  Identities=13%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+++..+  ++..+..
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~   61 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQ------------------ASAEKFENSMKEKGF--KARGLVL   61 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--ceEEEEe
Confidence            56778888875 7999999999999996 577776432                  355556666666543  5667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+..+++.....+.+.|+||.+..
T Consensus        62 D~~~~~~~~~~~~~~~~~~~~id~li~~Ag   91 (247)
T 3lyl_A           62 NISDIESIQNFFAEIKAENLAIDILVNNAG   91 (247)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCCSEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888767776655443333467899998763

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.61  E-value=0.0059  Score=52.72  Aligned_cols=89  Identities=24%  Similarity=0.381  Sum_probs=59.6

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.| .|++|.++++.|++.|..++.++|.+.                  .+  ...+.+.+..+..++..+..
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~------------------~~--~~~~~l~~~~~~~~~~~~~~   62 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE------------------NP--TALAELKAINPKVNITFHTY   62 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC------------------CH--HHHHHHHHHCTTSEEEEEEC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc------------------hH--HHHHHHHHhCCCceEEEEEE
Confidence            4678899996 479999999999999987788877432                  01  12234555555667788888


Q ss_pred             cccch-hhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLL-RKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~-~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++. +.+.+.++.....+.+.|+||.+..
T Consensus        63 D~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   93 (254)
T 1sby_A           63 DVTVPVAESKKLLKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ecCCChHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            88765 5555444321112257899998753

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.59  E-value=0.0052  Score=53.49  Aligned_cols=89  Identities=19%  Similarity=0.281  Sum_probs=62.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|++.|.. +.++|.+.                  .+.+.+.+.+.+..  .++..+.
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~   84 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARDV------------------EKLRAVEREIVAAG--GEAESHA   84 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCH------------------HHHHHHHHHHHHTT--CEEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCH------------------HHHHHHHHHHHHhC--CceeEEE
Confidence            466788999875 89999999999999974 77777532                  35556666666654  4667777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        85 ~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag  115 (262)
T 3rkr_A           85 CDLSHSDAIAAFATGVLAAHGRCDVLVNNAG  115 (262)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            8888767766555432222357899998764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.58  E-value=0.0053  Score=54.21  Aligned_cols=91  Identities=22%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .|.+.+.+.+.+..+ .++..+
T Consensus         8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~-~~~~~~   67 (311)
T 3o26_A            8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDV------------------TKGHEAVEKLKNSNH-ENVVFH   67 (311)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHTTTC-CSEEEE
T ss_pred             ccCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC-CceEEE
Confidence            3567888889886 7999999999999997 688877542                  355556666666543 357777


Q ss_pred             eccccch-hhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLL-RKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~-~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++. +.+..+++.....+.+.|+||.+..
T Consensus        68 ~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           68 QLDVTDPIATMSSLADFIKTHFGKLDILVNNAG  100 (311)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             EccCCCcHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            7788775 5554443321112357999998875

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.58  E-value=0.0079  Score=52.89  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=64.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC-CeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD-VTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~-v~v~~~   91 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.... .++..+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~   68 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNP------------------DKLAGAVQELEALGANGGAIRYE   68 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHTTCCSSCEEEEE
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhCCCCceEEEE
Confidence            567889999965 7999999999999997 577877532                  3455566666665432 367778


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|++|.+..
T Consensus        69 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  100 (281)
T 3svt_A           69 PTDITNEDETARAVDAVTAWHGRLHGVVHCAG  100 (281)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88888777766655432223357899997654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.56  E-value=0.0079  Score=51.81  Aligned_cols=88  Identities=20%  Similarity=0.299  Sum_probs=59.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+++..+  ++..+..
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~   69 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDE------------------AMATKAVEDLRMEGH--DVSSVVM   69 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--ceEEEEe
Confidence            56788999965 8999999999999996 688877432                  234444555555433  4666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|+||.+..
T Consensus        70 D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag   99 (260)
T 3awd_A           70 DVTNTESVQNAVRSVHEQEGRVDILVACAG   99 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            787766666554321112247899998753

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.53  E-value=0.011  Score=51.58  Aligned_cols=88  Identities=19%  Similarity=0.209  Sum_probs=62.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..  .++..+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~   66 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTV------------------ERLEDVAKQVTDTG--RRALSVG   66 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEE
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            477888999976 6899999999999996 477777432                  35556666666553  4566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.....+.+.|++|.+.
T Consensus        67 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           67 TDITDDAQVAHLVDETMKAYGRVDVVINNA   96 (264)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            888877777665543333346889999876

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.52  E-value=0.0059  Score=53.24  Aligned_cols=90  Identities=18%  Similarity=0.271  Sum_probs=63.2

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.| .||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.. ..++..+.
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~-~~~~~~~~   66 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRST------------------ADIDACVADLDQLG-SGKVIGVQ   66 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHTTS-SSCEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhhC-CCcEEEEE
Confidence            35678888886 57999999999999997 688877542                  35555666666543 24677788


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus        67 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg   97 (262)
T 3pk0_A           67 TDVSDRAQCDALAGRAVEEFGGIDVVCANAG   97 (262)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            8888777766555432222357999998763

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.52  E-value=0.037  Score=49.81  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=67.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +..++|+|.|+ |.+|+.+++.|...| .++++++.+.-              -...|...+. .+..  +.  ++.+..
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~--------------~~~~~~~~~~-~l~~--~~--v~~~~~   67 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGP--------------RSPSKAKIFK-ALED--KG--AIIVYG   67 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSC--------------CCHHHHHHHH-HHHH--TT--CEEEEC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCC--------------CChhHHHHHH-HHHh--CC--cEEEEe
Confidence            44679999998 999999999999999 56777664320              0112333222 2221  23  445666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC--HHHHHHHHHHHHHhC-Cceee
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN--FEARMTINMACNQLG-QTWFE  144 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~--~~~r~~in~~~~~~~-~p~i~  144 (292)
                      ++++.+.+.+.++.     .++|+||.+...  ......+-++|.+.+ ++.+.
T Consensus        68 Dl~d~~~l~~~~~~-----~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           68 LINEQEAMEKILKE-----HEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             CTTCHHHHHHHHHH-----TTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             ecCCHHHHHHHHhh-----CCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEe
Confidence            77776777777632     289999998763  444566778888888 66543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.51  E-value=0.0082  Score=52.97  Aligned_cols=92  Identities=15%  Similarity=0.288  Sum_probs=62.2

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..|++++|+|.|+ ||+|.++++.|++.|. ++.++|...                 ..+.+.+.+.+.+.. ..++..+
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~-----------------~~~~~~~~~~~~~~~-~~~~~~~   81 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGA-----------------PDEIRTVTDEVAGLS-SGTVLHH   81 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCC-----------------HHHHHHHHHHHHTTC-SSCEEEE
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC-----------------hHHHHHHHHHHhhcc-CCcEEEE
Confidence            3567788999975 7999999999999997 677766421                 124444555555442 3467777


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+..+++.....+.+.|++|.+..
T Consensus        82 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  113 (281)
T 3v2h_A           82 PADMTKPSEIADMMAMVADRFGGADILVNNAG  113 (281)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHTSSCSEEEECCC
T ss_pred             eCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            88888777776655433333467899997753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.51  E-value=0.0023  Score=59.91  Aligned_cols=36  Identities=28%  Similarity=0.502  Sum_probs=33.1

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +.+++|+|+|+|++|..+++.|...|+.+++++|.+
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~  200 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT  200 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            578999999999999999999999999999998753

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.50  E-value=0.0041  Score=54.04  Aligned_cols=89  Identities=17%  Similarity=0.303  Sum_probs=61.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+.+..  .++..+.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~   61 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTK------------------EKLEEAKLEIEQFP--GQILTVQ   61 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHCCST--TCEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            467788888876 7999999999999996 577877532                  24455555555433  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus        62 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg   92 (257)
T 3imf_A           62 MDVRNTDDIQKMIEQIDEKFGRIDILINNAA   92 (257)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888767766655432223357899998763

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.49  E-value=0.019  Score=48.23  Aligned_cols=91  Identities=9%  Similarity=0.082  Sum_probs=59.5

Q ss_pred             CcEEEEc-CChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLT-RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++|+|.| .|++|..+++.|+ ..|. ++++++.+.-+                 |.+    .+....  -.++.+..++
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~-----------------~~~----~~~~~~--~~~~~~~~D~   61 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKT-----------------RIP----PEIIDH--ERVTVIEGSF   61 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHH-----------------HSC----HHHHTS--TTEEEEECCT
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccc-----------------cch----hhccCC--CceEEEECCC
Confidence            4599999 5999999999999 8887 68887754210                 110    111122  3456677788


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCC--HHHHHHHHHHHHHhCC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDN--FEARMTINMACNQLGQ  140 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~--~~~r~~in~~~~~~~~  140 (292)
                      ++.+.+.+.+       .++|+||.+...  .. ...+-+.+.+.+.
T Consensus        62 ~d~~~~~~~~-------~~~d~vv~~ag~~n~~-~~~~~~~~~~~~~  100 (221)
T 3r6d_A           62 QNPGXLEQAV-------TNAEVVFVGAMESGSD-MASIVKALSRXNI  100 (221)
T ss_dssp             TCHHHHHHHH-------TTCSEEEESCCCCHHH-HHHHHHHHHHTTC
T ss_pred             CCHHHHHHHH-------cCCCEEEEcCCCCChh-HHHHHHHHHhcCC
Confidence            8777777776       689999988764  33 3334455666554

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.48  E-value=0.015  Score=52.47  Aligned_cols=72  Identities=26%  Similarity=0.369  Sum_probs=49.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHh----hCCCCeEEEEecc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQN----INPDVTIEVHNFN   94 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~----~np~v~v~~~~~~   94 (292)
                      ||.|+|+|.+|+.++..|+..|.+++.|+|-+.                  .|++..+..|.+    ....++++.....
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~d~   62 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP------------------GKPQGEALDLAHAAAELGVDIRISGSNSY   62 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST------------------THHHHHHHHHHHHHHHHTCCCCEEEESCG
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh------------------hhHHHHHHHHHHhhhhcCCCeEEEECCCH
Confidence            699999999999999999999996799998542                  233333333433    3446666654321


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                          +.           +.++|+||.+..
T Consensus        63 ----~a-----------~~~aD~Vi~~ag   76 (308)
T 2d4a_B           63 ----ED-----------MRGSDIVLVTAG   76 (308)
T ss_dssp             ----GG-----------GTTCSEEEECCS
T ss_pred             ----HH-----------hCCCCEEEEeCC
Confidence                11           278999999853

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.47  E-value=0.013  Score=52.69  Aligned_cols=96  Identities=17%  Similarity=0.078  Sum_probs=56.2

Q ss_pred             HHHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          10 ENYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      ..++.++.++|+|.|+ |.+|+.+++.|...|. +++++|...-.                              +.  +
T Consensus        12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~------------------------------~~--~   58 (347)
T 4id9_A           12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPSG------------------------------TG--G   58 (347)
T ss_dssp             ---------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCCS------------------------------SC--C
T ss_pred             CcccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCCC------------------------------CC--c
Confidence            4567889999999998 9999999999999995 56666643210                              12  2


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCH---------------HHHHHHHHHHHHhCC-ceeec
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF---------------EARMTINMACNQLGQ-TWFES  145 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~---------------~~r~~in~~~~~~~~-p~i~~  145 (292)
                      +.+..++++.+.+.+.+       .++|+||.+....               .....+-++|.+.++ .+|+.
T Consensus        59 ~~~~~Dl~d~~~~~~~~-------~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~  124 (347)
T 4id9_A           59 EEVVGSLEDGQALSDAI-------MGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFA  124 (347)
T ss_dssp             SEEESCTTCHHHHHHHH-------TTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cEEecCcCCHHHHHHHH-------hCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence            33445566556666665       5788888765311               112345667777776 45443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.47  E-value=0.0068  Score=52.77  Aligned_cols=90  Identities=16%  Similarity=0.178  Sum_probs=59.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..+..++..+..
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~   65 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNL------------------EAGVQCKAALHEQFEPQKTLFIQC   65 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHTTTSCGGGEEEEEC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhhcCCCceEEEec
Confidence            45678899975 7999999999999995 577776432                  233334444544333445777777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        66 D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag   95 (267)
T 2gdz_A           66 DVADQQQLRDTFRKVVDHFGRLDILVNNAG   95 (267)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888766666555332222357899998763

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.47  E-value=0.0071  Score=53.10  Aligned_cols=89  Identities=12%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..|++|.++|-|. +|+|.++|+.|++.|. ++.++|.+.                  .+.+.+++.+++..  .++..+
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~------------------~~~~~~~~~i~~~g--~~~~~~   61 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLE------------------DRLNQIVQELRGMG--KEVLGV   61 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEE
Confidence            3588898888865 6999999999999996 577877532                  36677777787764  456778


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++++.+..+.+++.....+.+.|++|+..
T Consensus        62 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA   92 (254)
T 4fn4_A           62 KADVSKKKDVEEFVRRTFETYSRIDVLCNNA   92 (254)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            8888887887766655444557899999765

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.47  E-value=0.0082  Score=52.13  Aligned_cols=89  Identities=17%  Similarity=0.253  Sum_probs=59.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.. ..++..+..
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~-~~~~~~~~~   64 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQV------------------DRLHEAARSLKEKF-GVRVLEVAV   64 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHH-CCCEEEEEC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHHHHHHhc-CCceEEEEc
Confidence            56788999975 7999999999999996 677776432                  23444445554431 235666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        65 D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   94 (263)
T 3ai3_A           65 DVATPEGVDAVVESVRSSFGGADILVNNAG   94 (263)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            887766666555322222357899998763

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.45  E-value=0.0085  Score=52.78  Aligned_cols=91  Identities=23%  Similarity=0.284  Sum_probs=59.6

Q ss_pred             HHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          12 YEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        12 q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      +..+++++|+|.|+ ||+|.++++.|++.|.. +.++|.+.                  .+.+.+.+.+++..  .++..
T Consensus        19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~------------------~~~~~~~~~l~~~~--~~~~~   77 (279)
T 3sju_A           19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARDA------------------KNVSAAVDGLRAAG--HDVDG   77 (279)
T ss_dssp             ------CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCH------------------HHHHHHHHHHHTTT--CCEEE
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHhcC--CcEEE
Confidence            44567788888875 79999999999999964 77777432                  35566666666654  45667


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +..++++.+.+...++.....+.+.|++|.+..
T Consensus        78 ~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg  110 (279)
T 3sju_A           78 SSCDVTSTDEVHAAVAAAVERFGPIGILVNSAG  110 (279)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence            777888767666555432222357899998763

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.44  E-value=0.01  Score=54.06  Aligned_cols=75  Identities=28%  Similarity=0.306  Sum_probs=52.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC---CCeEEEE
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP---DVTIEVH   91 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np---~v~v~~~   91 (292)
                      ...||+|+|+|.+|+.++..|+..|+ +++.|+|-+.                  .|++..+.-|....|   .+++.. 
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~------------------~k~~g~a~DL~~~~~~~~~~~i~~-   68 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK------------------DKTKGDAIDLEDALPFTSPKKIYS-   68 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH------------------HHHHHHHHHHHTTGGGSCCCEEEE-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh------------------HHHHHHHhhHhhhhhhcCCcEEEE-
Confidence            45689999999999999999999997 6899998532                  356655556665443   334331 


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                       .      ++++        +.++|+||.+...
T Consensus        69 -~------~~~a--------~~~aDiVvi~ag~   86 (326)
T 3vku_A           69 -A------EYSD--------AKDADLVVITAGA   86 (326)
T ss_dssp             -C------CGGG--------GTTCSEEEECCCC
T ss_pred             -C------cHHH--------hcCCCEEEECCCC
Confidence             1      1111        2689999888653

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.44  E-value=0.0057  Score=55.71  Aligned_cols=34  Identities=35%  Similarity=0.478  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      ..||.|+|+|.+|+.++..|+..|. +++.++|-+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            4689999999999999999999997 689999853

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.43  E-value=0.0047  Score=56.33  Aligned_cols=34  Identities=18%  Similarity=0.357  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..||+|+|+|.+|+.+|..|+..|..+++|+|-|
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3589999999999999999999998559999865

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.40  E-value=0.0063  Score=52.23  Aligned_cols=89  Identities=18%  Similarity=0.252  Sum_probs=59.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..+  ++..+.
T Consensus         8 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~   66 (255)
T 1fmc_A            8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINA------------------DAANHVVDEIQQLGG--QAFACR   66 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCH------------------HHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHHHHHHhCC--ceEEEE
Confidence            366788999976 8999999999999996 677777432                  234445555655544  455667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        67 ~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag   97 (255)
T 1fmc_A           67 CDITSEQELSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7777766666554321111247899998753

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.40  E-value=0.0081  Score=52.82  Aligned_cols=90  Identities=19%  Similarity=0.255  Sum_probs=61.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.. ..++..+.
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~-~~~~~~~~   83 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSL------------------PRVLTAARKLAGAT-GRRCLPLS   83 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCH------------------HHHHHHHHHHHHHH-SSCEEEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhc-CCcEEEEE
Confidence            477889999976 5899999999999997 788877532                  24444445554432 34677778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus        84 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  114 (277)
T 4fc7_A           84 MDVRAPPAVMAAVDQALKEFGRIDILINCAA  114 (277)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            8888766666555432222357899998764

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.40  E-value=0.0074  Score=52.97  Aligned_cols=87  Identities=22%  Similarity=0.329  Sum_probs=60.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+.+..  .++..+..
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~~   60 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGA-KILLGARRQ------------------ARIEAIATEIRDAG--GTALAQVL   60 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence            35677888876 7999999999999996 477777432                  35566666666553  45667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+..+++.....+.+.|++|.+.
T Consensus        61 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA   89 (264)
T 3tfo_A           61 DVTDRHSVAAFAQAAVDTWGRIDVLVNNA   89 (264)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            88876766655543222235799999876

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.39  E-value=0.015  Score=51.15  Aligned_cols=91  Identities=13%  Similarity=0.153  Sum_probs=60.2

Q ss_pred             HHHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          10 ENYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      .....|+ ++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+...   .++
T Consensus        15 ~~~~~~~-k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~---~~~   71 (272)
T 2nwq_A           15 PRGSHMS-STLFITGATSGFGEACARRFAEAGW-SLVLTGRRE------------------ERLQALAGELSAK---TRV   71 (272)
T ss_dssp             ------C-CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHTTT---SCE
T ss_pred             ccCCCcC-cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHhhcC---CcE
Confidence            3345676 77888765 6999999999999996 577777432                  2344444444332   467


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..+..++++.+.+...++.....+.+.|++|.+..
T Consensus        72 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG  106 (272)
T 2nwq_A           72 LPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAG  106 (272)
T ss_dssp             EEEECCTTCHHHHHHHHHTCCGGGSSCCEEEECCC
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            77888888878888777665555567899998763

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.39  E-value=0.0053  Score=54.75  Aligned_cols=90  Identities=14%  Similarity=0.195  Sum_probs=60.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.. ..++..+.
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~-~~~~~~~~   97 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSP------------------RELSSVTAELGELG-AGNVIGVR   97 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSG------------------GGGHHHHHHHTTSS-SSCEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhhC-CCcEEEEE
Confidence            356778888865 6899999999999997 788887543                  23344455555443 24567777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.++++.....+.+.|++|.+..
T Consensus        98 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  128 (293)
T 3rih_A           98 LDVSDPGSCADAARTVVDAFGALDVVCANAG  128 (293)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EeCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888766666554432223357899998753

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.38  E-value=0.011  Score=52.14  Aligned_cols=95  Identities=15%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-....+.           .+.+.+.+.+.+..  .++..+..
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~~~~~~   72 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLP-----------GTIYTAAKEIEEAG--GQALPIVG   72 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSC-----------CCHHHHHHHHHHHT--SEEEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhh-----------HHHHHHHHHHHhcC--CcEEEEEC
Confidence            57788999975 7999999999999997 6888886543222221           13344455566554  46777788


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+..+++.....+.+.|++|.+..
T Consensus        73 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           73 DIRDGDAVAAAVAKTVEQFGGIDICVNNAS  102 (285)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888777766655432223358999998753

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.38  E-value=0.0093  Score=52.50  Aligned_cols=88  Identities=15%  Similarity=0.200  Sum_probs=60.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.. ..++..+.
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~-~~~~~~~~   84 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSK------------------ETLQKVVSHCLELG-AASAHYIA   84 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHT-CSEEEEEE
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHhC-CCceEEEe
Confidence            467889999987 8999999999999996 688877532                  24444555555553 24667777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEec
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSC  121 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a  121 (292)
                      .++++.+.+...++.....+.+.|+||.+
T Consensus        85 ~Dl~d~~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           85 GTMEDMTFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            78877666655543221122578999976

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.37  E-value=0.0057  Score=54.21  Aligned_cols=33  Identities=27%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            689999999999999999999997 788888543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.37  E-value=0.011  Score=52.21  Aligned_cols=90  Identities=14%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      -.+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+.+.  ..++..+
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~--~~~~~~~   82 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGV-TVGALGRTR------------------TEVEEVADEIVGA--GGQAIAL   82 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHHHHTTT--TCCEEEE
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCcEEEE
Confidence            3567788889975 7899999999999997 677777432                  2445555555543  3456677


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|++|.+..
T Consensus        83 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A           83 EADVSDELQMRNAVRDLVLKFGHLDIVVANAG  114 (283)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            78888766666555432223357899997653

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.37  E-value=0.0073  Score=52.91  Aligned_cols=82  Identities=17%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+.+++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-                         ++.+... -++..+.
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~-------------------------~~~~~~~-~~~~~~~   65 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVE-------------------------RLKALNL-PNTLCAQ   65 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHH-------------------------HHHTTCC-TTEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHH-------------------------HHHHhhc-CCceEEE
Confidence            577888999976 7999999999999996 5777775421                         1111111 1345556


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        66 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA   95 (266)
T 3p19_A           66 VDVTDKYTFDTAITRAEKIYGPADAIVNNA   95 (266)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred             ecCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence            666665555544432222234678888765

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.37  E-value=0.023  Score=47.58  Aligned_cols=86  Identities=10%  Similarity=0.193  Sum_probs=59.0

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ||+|.| .|++|..+++.|+..| -++++++.+.-....+                            -.++.+..++++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~----------------------------~~~~~~~~D~~d   52 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQVPQY----------------------------NNVKAVHFDVDW   52 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGSCCC----------------------------TTEEEEECCTTS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccchhhc----------------------------CCceEEEecccC
Confidence            799998 7999999999999999 4688877543111000                            235566667766


Q ss_pred             -hhhHHHHHhcCCCCCCCcceEEeccCC---------HHHHHHHHHHHHHhCC
Q psy2302          98 -LRKVGALAVQGSLTEGPVDLVLSCVDN---------FEARMTINMACNQLGQ  140 (292)
Q Consensus        98 -~~~~~~~i~~~~~~~~~~DlVv~a~d~---------~~~r~~in~~~~~~~~  140 (292)
                       .+.+.+.+       .++|+||.+...         ......+-++|.+.++
T Consensus        53 ~~~~~~~~~-------~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~   98 (219)
T 3dqp_A           53 TPEEMAKQL-------HGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEV   98 (219)
T ss_dssp             CHHHHHTTT-------TTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHH-------cCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCC
Confidence             56665544       689999988753         3334556677777765

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.36  E-value=0.0068  Score=52.57  Aligned_cols=89  Identities=10%  Similarity=0.045  Sum_probs=58.8

Q ss_pred             HHHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          13 EHIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        13 ~~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ..+++++|+|.|+   ||+|.++++.|++.|. ++.++|.+.                  ...+. .+.+.+..+.  +.
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~-~~~~~~~~~~--~~   67 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGD------------------RFKDR-ITEFAAEFGS--EL   67 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSG------------------GGHHH-HHHHHHHTTC--CC
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecch------------------hhHHH-HHHHHHHcCC--cE
Confidence            4678999999996   5999999999999997 677777431                  01122 2333334444  44


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..++++.+.+..+++.....+.+.|++|.+..
T Consensus        68 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  101 (271)
T 3ek2_A           68 VFPCDVADDAQIDALFASLKTHWDSLDGLVHSIG  101 (271)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHCSCEEEEEECCC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            5677777766666655433223457899998753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.35  E-value=0.0082  Score=54.46  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=28.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..||+|+|+|.+|+.++..|++.|. +++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r   34 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLAR   34 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4689999999999999999999996 6888774

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.35  E-value=0.0072  Score=52.21  Aligned_cols=86  Identities=22%  Similarity=0.277  Sum_probs=56.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+   ++.  .++..+.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~---~~~--~~~~~~~   58 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINA------------------EGAKAAAA---SIG--KKARAIA   58 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCH------------------HHHHHHHH---HHC--TTEEECC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHH---HhC--CceEEEE
Confidence            577889999976 7999999999999996 577766432                  22333333   332  3566677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus        59 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg   89 (247)
T 3rwb_A           59 ADISDPGSVKALFAEIQALTGGIDILVNNAS   89 (247)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            7777766666555432222357899987654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.35  E-value=0.011  Score=53.07  Aligned_cols=99  Identities=17%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-    +.|    ...-...+.+.+.+.+.+..  .++..+.
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~----~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~   92 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVG----LDG----SPASGGSAAQSVVDEITAAG--GEAVADG   92 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBC----TTS----SBTCTTSHHHHHHHHHHHTT--CEEEEEC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCccc----ccc----cccccHHHHHHHHHHHHhcC--CcEEEEE
Confidence            467788888875 7999999999999996 6888876531    111    11222446666777776654  4677778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus        93 ~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A           93 SNVADWDQAAGLIQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888777766655432223357899997763

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.34  E-value=0.015  Score=50.31  Aligned_cols=90  Identities=17%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+.+... .++..+.
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~-~~~~~~~   68 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNE------------------EKLRQVASHINEETG-RQPQWFI   68 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHHS-CCCEEEE
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhhcC-CCceEEE
Confidence            578889999976 7899999999999997 588877532                  244555555555432 1334445


Q ss_pred             ccc--cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNI--TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i--~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++  ++.+....+++.....+.+.|++|.+..
T Consensus        69 ~D~~~~~~~~~~~~~~~~~~~~g~id~lv~nAg  101 (252)
T 3f1l_A           69 LDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAG  101 (252)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred             EecccCCHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            555  5545555444332223457899987753

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.34  E-value=0.0083  Score=52.98  Aligned_cols=91  Identities=16%  Similarity=0.146  Sum_probs=58.6

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.... .+..+
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~-~~~~~   88 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRP------------------DVLDAAAGEIGGRTGN-IVRAV   88 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHHSS-CEEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcCCC-eEEEE
Confidence            3567888888875 7899999999999997 577877532                  2445555556554332 34667


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+.++++.....+.+.|++|.+..
T Consensus        89 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG  120 (281)
T 4dry_A           89 VCDVGDPDQVAALFAAVRAEFARLDLLVNNAG  120 (281)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            77887767666555432223357899998763

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.33  E-value=0.009  Score=51.88  Aligned_cols=88  Identities=17%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|.. +.++|.+.                  .+.+.+.+.+.+..  .++..+.
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~   67 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLKS------------------EGAEAVAAAIRQAG--GKAIGLE   67 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESSH------------------HHHHHHHHHHHHTT--CCEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            467788888875 79999999999999975 77777432                  35566666666654  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        68 ~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA   97 (256)
T 3gaf_A           68 CNVTDEQHREAVIKAALDQFGKITVLVNNA   97 (256)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            788876766655543222235789999875

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.32  E-value=0.014  Score=49.32  Aligned_cols=36  Identities=11%  Similarity=0.341  Sum_probs=28.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ++...+|.|+|+|.+|+.++..|++.|. +++++|.+
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            5678899999999999999999999995 68888754

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.32  E-value=0.015  Score=50.20  Aligned_cols=88  Identities=17%  Similarity=0.255  Sum_probs=59.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++++|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..  .++..+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~   62 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGA-AVAIAARRV------------------EKLRALGDELTAAG--AKVHVLE   62 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            366788999975 7999999999999996 577776432                  24455556665543  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        63 ~Dv~~~~~~~~~~~~~~~~~g~id~lv~nA   92 (247)
T 2jah_A           63 LDVADRQGVDAAVASTVEALGGLDILVNNA   92 (247)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            788776666655533222235789999865

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.31  E-value=0.012  Score=52.34  Aligned_cols=88  Identities=26%  Similarity=0.297  Sum_probs=61.7

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+....  .++..+..
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~~   87 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQ------------------PALEQAVNGLRGQG--FDAHGVVC   87 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CceEEEEc
Confidence            66788999976 6899999999999996 577776532                  35555666666553  45667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|+||.+..
T Consensus        88 Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           88 DVRHLDEMVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            888767766555432222357899998764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.31  E-value=0.014  Score=52.92  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=32.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +..||.|+|+|.+|+.+|..|+..|.++++|+|-+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            45799999999999999999999998899999975

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.30  E-value=0.012  Score=51.23  Aligned_cols=87  Identities=10%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             HhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      |++++|+|.|+   |++|.++++.|++.|. ++.++|.+. .                  .+...+.+.+..+..  ..+
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~-~------------------~~~~~~~l~~~~~~~--~~~   64 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-K------------------LKGRVEEFAAQLGSD--IVL   64 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST-T------------------THHHHHHHHHHTTCC--CEE
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcH-H------------------HHHHHHHHHHhcCCc--EEE
Confidence            56788999998   6999999999999996 577776432 1                  111223333333333  455


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|+||.+..
T Consensus        65 ~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag   96 (265)
T 1qsg_A           65 QCDVAEDASIDTMFAELGKVWPKFDGFVHSIG   96 (265)
T ss_dssp             ECCTTCHHHHHHHHHHHHTTCSSEEEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66777766666655443334467899998764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.30  E-value=0.018  Score=49.82  Aligned_cols=88  Identities=13%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.  ..++..+..
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~   65 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQ------------------KELNDCLTQWRSK--GFKVEASVC   65 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHT--TCEEEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCcEEEEEc
Confidence            56788999975 7999999999999996 577777432                  2344445555544  346677777


Q ss_pred             cccchhhHHHHHhcCCCCC-CCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTE-GPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~-~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+ .+.|+||.+..
T Consensus        66 D~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   96 (260)
T 2ae2_A           66 DLSSRSERQELMNTVANHFHGKLNILVNNAG   96 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence            8887666665554322223 57899998764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.30  E-value=0.015  Score=51.41  Aligned_cols=90  Identities=10%  Similarity=0.145  Sum_probs=60.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.. ..++..+.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~-~~~~~~~~   82 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKM------------------DVLKATAEQISSQT-GNKVHAIQ   82 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHH-SSCEEEEE
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhc-CCceEEEE
Confidence            467788999975 7999999999999996 587777432                  23444455555442 23566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        83 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag  113 (302)
T 1w6u_A           83 CDVRDPDMVQNTVSELIKVAGHPNIVINNAA  113 (302)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             eCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7887766666555432222357899998764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.30  E-value=0.0085  Score=52.06  Aligned_cols=90  Identities=12%  Similarity=0.103  Sum_probs=57.5

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .+++++|+|.|++   |+|.++++.|++.|.. +.++|.+.                  ...+.+.+...+ .+..++..
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~-~~~~~~~~   63 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYAGE------------------RLEKSVHELAGT-LDRNDSII   63 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSG------------------GGHHHHHHHHHT-SSSCCCEE
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecCch------------------HHHHHHHHHHHh-cCCCCceE
Confidence            3567899999985   3999999999999974 77766431                  112233333333 33335667


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +..++++.+.+.++++.....+.+.|++|.+..
T Consensus        64 ~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag   96 (266)
T 3oig_A           64 LPCDVTNDAEIETCFASIKEQVGVIHGIAHCIA   96 (266)
T ss_dssp             EECCCSSSHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHhCCeeEEEEccc
Confidence            777887766666555432222357899887753

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.30  E-value=0.019  Score=51.43  Aligned_cols=32  Identities=28%  Similarity=0.252  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      .||.|+|+|.+|+.+|..|...|. ++|.|+|-
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di   33 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI   33 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            379999999999999999998884 89999984

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.29  E-value=0.015  Score=53.58  Aligned_cols=35  Identities=29%  Similarity=0.545  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ++.++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~  199 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN  199 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            567899999999999999999999999 89998854

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.29  E-value=0.0088  Score=52.69  Aligned_cols=89  Identities=11%  Similarity=0.170  Sum_probs=61.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+.+...  ++..+.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~   87 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHS------------------DALQVVADEIAGVGG--KALPIR   87 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSG------------------GGGHHHHHHHHHTTC--CCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--eEEEEE
Confidence            567889999975 7999999999999996 577777532                  234455566665543  455667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.++++.....+.+.|++|.+..
T Consensus        88 ~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg  118 (276)
T 3r1i_A           88 CDVTQPDQVRGMLDQMTGELGGIDIAVCNAG  118 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7887767766655432222357899998763

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.29  E-value=0.013  Score=50.77  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+++..  .++..+.
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~   62 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNG------------------EKLAPLVAEIEAAG--GRIVARS   62 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSG------------------GGGHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeEEEEE
Confidence            466788999975 5899999999999997 588877532                  24445556666653  4677788


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++..... .+.|++|.+..
T Consensus        63 ~Dv~~~~~v~~~~~~~~~~-g~id~lv~nAg   92 (252)
T 3h7a_A           63 LDARNEDEVTAFLNAADAH-APLEVTIFNVG   92 (252)
T ss_dssp             CCTTCHHHHHHHHHHHHHH-SCEEEEEECCC
T ss_pred             CcCCCHHHHHHHHHHHHhh-CCceEEEECCC
Confidence            8888777776655432222 47899987764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.27  E-value=0.012  Score=51.56  Aligned_cols=88  Identities=14%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ ||+|.++++.|++.|.. +.++|.+.                 ..+.+.+.+.+.+..  .++..+..
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~-----------------~~~~~~~~~~l~~~~--~~~~~~~~   88 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVNA-----------------AERAQAVVSEIEQAG--GRAVAIRA   88 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC-----------------HHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCC-----------------HHHHHHHHHHHHhcC--CcEEEEEC
Confidence            56788999975 68999999999999974 66665322                 124556666666654  35667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+.+.++.....+.+.|++|.+.
T Consensus        89 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  117 (271)
T 3v2g_A           89 DNRDAEAIEQAIRETVEALGGLDILVNSA  117 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            88876776665543222335789999876

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.27  E-value=0.011  Score=50.68  Aligned_cols=90  Identities=14%  Similarity=0.241  Sum_probs=59.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                 ..+.+.+.+.+....  .++..+.
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~-----------------~~~~~~~~~~~~~~~--~~~~~~~   63 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKA-----------------PANIDETIASMRADG--GDAAFFA   63 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-----------------CTTHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCc-----------------hhhHHHHHHHHHhcC--CceEEEE
Confidence            366788888875 8999999999999996 577776431                 113344445555443  3567777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        64 ~D~~~~~~~~~~~~~~~~~~g~id~vi~~Ag   94 (258)
T 3afn_B           64 ADLATSEACQQLVDEFVAKFGGIDVLINNAG   94 (258)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7888766666555322112247899998764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.27  E-value=0.0074  Score=52.73  Aligned_cols=89  Identities=19%  Similarity=0.304  Sum_probs=61.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.. ..++..+.
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~-~~~~~~~~   76 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDV------------------SELDAARRALGEQF-GTDVHTVA   76 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhc-CCcEEEEE
Confidence            467788888875 7999999999999997 478877532                  34555556665522 34567777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.....+.+.|++|.+.
T Consensus        77 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  106 (266)
T 4egf_A           77 IDLAEPDAPAELARRAAEAFGGLDVLVNNA  106 (266)
T ss_dssp             CCTTSTTHHHHHHHHHHHHHTSCSEEEEEC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            888776666655443222335789999875

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.27  E-value=0.072  Score=47.71  Aligned_cols=119  Identities=24%  Similarity=0.352  Sum_probs=70.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +||.+||+|..|..+|.+|.+.|. .+++.|.+.=....+       .+.|-..+...++..+  ..++-+..    +.+
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l-------~~~Ga~~a~s~~e~~~--~~dvv~~~----l~~   69 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGL-------VAAGASAARSARDAVQ--GADVVISM----LPA   69 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHH-------HHTTCEECSSHHHHHT--TCSEEEEC----CSC
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHH-------HHcCCEEcCCHHHHHh--cCCceeec----CCc
Confidence            479999999999999999999996 577776432111000       0111111111222211  12333222    222


Q ss_pred             hhhHHHHHhcCCC---CCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCcccc
Q psy2302          98 LRKVGALAVQGSL---TEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSEN  150 (292)
Q Consensus        98 ~~~~~~~i~~~~~---~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~~  150 (292)
                      .+..++.+.....   ...+-++|||++. ++.....+.+.+.++|+-|+++.+++.
T Consensus        70 ~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg  126 (300)
T 3obb_A           70 SQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGG  126 (300)
T ss_dssp             HHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESC
T ss_pred             hHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCC
Confidence            3555555543221   1234578887754 577778899999999999999988763

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.26  E-value=0.024  Score=50.69  Aligned_cols=103  Identities=12%  Similarity=0.105  Sum_probs=63.3

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      +.+++++|+|.|+ |++|+.+++.|+..|. +++++|.+.-....+    +  ..+                +  .++.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~----~--~~l----------------~--~v~~~   70 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFATGKREV----L--PPV----------------A--GLSVI   70 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCSSSCGGG----S--CSC----------------T--TEEEE
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCccchhh----h--hcc----------------C--CceEE
Confidence            4577889999998 9999999999999994 688877532111000    0  000                1  34555


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccCC--------------HHHHHHHHHHHHHhCC-ceeec
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN--------------FEARMTINMACNQLGQ-TWFES  145 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~--------------~~~r~~in~~~~~~~~-p~i~~  145 (292)
                      ..++++.+.+.+.++.     .++|+||.+...              ......+-++|.+.++ .+|+.
T Consensus        71 ~~Dl~d~~~~~~~~~~-----~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~  134 (330)
T 2pzm_A           71 EGSVTDAGLLERAFDS-----FKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNF  134 (330)
T ss_dssp             ECCTTCHHHHHHHHHH-----HCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEE
T ss_pred             EeeCCCHHHHHHHHhh-----cCCCEEEECCccCCCccccChhHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence            6667665666666521     178988887642              1122445667777765 44443

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.26  E-value=0.014  Score=51.62  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC---CCCeEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN---PDVTIE   89 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n---p~v~v~   89 (292)
                      .|++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+....   ...++.
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~   75 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKL------------------ERLKSAADELQANLPPTKQARVI   75 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTSCTTCCCCEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhhccccCCccEE
Confidence            577889999965 7999999999999996 577777432                  24444555555421   234677


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..++++.+.+...++.....+.+.|+||.+..
T Consensus        76 ~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGG  109 (303)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7788887766666555322112347899998764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.26  E-value=0.023  Score=51.11  Aligned_cols=34  Identities=24%  Similarity=0.503  Sum_probs=30.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..||.|+|+|.+|+.+|..|+..|..+++++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            3689999999999999999999998679999865

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.25  E-value=0.0096  Score=52.27  Aligned_cols=88  Identities=18%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+....  +..+.
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~--~~~~~   83 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTE------------------AGAEGIGAAFKQAGLE--GRGAV   83 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHHHHHHHTCC--CEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCCc--EEEEE
Confidence            467778888865 7999999999999997 677776432                  3455566666665443  44566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.....+.+.|++|.+.
T Consensus        84 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  113 (270)
T 3ftp_A           84 LNVNDATAVDALVESTLKEFGALNVLVNNA  113 (270)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            677776666655543222235789999876

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.24  E-value=0.024  Score=51.18  Aligned_cols=34  Identities=32%  Similarity=0.502  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      ..||.|+|+|.+|+.++..|+..|. +++.++|-+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3689999999999999999999884 789999854

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.24  E-value=0.016  Score=53.09  Aligned_cols=77  Identities=14%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEe
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHN   92 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~   92 (292)
                      ...||+|+|+ |.+|+.+|..|+..|. .++.|+|-+.                  .|++..+.-|+.. .|..++... 
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~------------------~k~~g~a~DL~~~~~~~~~i~~t-   67 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA------------------VGLEGVAEEIRHCGFEGLNLTFT-   67 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH------------------HHHHHHHHHHHHHCCTTCCCEEE-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc------------------hhHHHHHHhhhhCcCCCCceEEc-
Confidence            4579999998 9999999999999996 5899998542                  2555444444443 232333321 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                            .++.+.+       .++|+||.+...
T Consensus        68 ------~d~~~al-------~dADvVvitaG~   86 (343)
T 3fi9_A           68 ------SDIKEAL-------TDAKYIVSSGGA   86 (343)
T ss_dssp             ------SCHHHHH-------TTEEEEEECCC-
T ss_pred             ------CCHHHHh-------CCCCEEEEccCC
Confidence                  2333323       789999998754

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.24  E-value=0.0086  Score=51.92  Aligned_cols=90  Identities=17%  Similarity=0.237  Sum_probs=59.0

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..|++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..  .++..+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~   68 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQ------------------ENVDRTVATLQGEG--LSVTGT   68 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEE
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CceEEE
Confidence            4577788888865 7999999999999996 688877432                  23444445555443  345666


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|+||.+..
T Consensus        69 ~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag  100 (260)
T 2zat_A           69 VCHVGKAEDRERLVAMAVNLHGGVDILVSNAA  100 (260)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            77777666665554322112357899997653

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.24  E-value=0.019  Score=50.12  Aligned_cols=89  Identities=17%  Similarity=0.268  Sum_probs=60.5

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.| .|++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+++..  .++..+.
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~   86 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINK------------------HGLEETAAKCKGLG--AKVHTFV   86 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCH------------------HHHHHHHHHHHhcC--CeEEEEE
Confidence            46778999997 57999999999999996 577777432                  23444555555543  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        87 ~Dl~~~~~v~~~~~~~~~~~g~iD~li~~Ag  117 (272)
T 1yb1_A           87 VDCSNREDIYSSAKKVKAEIGDVSILVNNAG  117 (272)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             eeCCCHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence            7887766666555432222357899998763

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.23  E-value=0.0084  Score=52.67  Aligned_cols=89  Identities=20%  Similarity=0.265  Sum_probs=61.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+                  ..+.+.+.+.+++..+  ++..+.
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~------------------~~~~~~~~~~l~~~~~--~~~~~~   81 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTD------------------PSRVAQTVQEFRNVGH--DAEAVA   81 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSC------------------HHHHHHHHHHHHHTTC--CEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC------------------HHHHHHHHHHHHhcCC--ceEEEE
Confidence            466788888875 7999999999999997 57775532                  2355556666665543  466677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.....+.+.|++|.+..
T Consensus        82 ~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  112 (271)
T 4ibo_A           82 FDVTSESEIIEAFARLDEQGIDVDILVNNAG  112 (271)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCCCCEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence            7887766666655433223457899998753

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.23  E-value=0.015  Score=50.22  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=62.6

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHH---hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTR---CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~---~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      |++++++|.| .||+|.++++.|++   .|. ++.++|.+.                  .+.+.+.+.+.+.++..++..
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~   64 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSE------------------SMLRQLKEELGAQQPDLKVVL   64 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCH------------------HHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCH------------------HHHHHHHHHHHhhCCCCeEEE
Confidence            5567778876 47999999999998   786 677776432                  355666677777777778888


Q ss_pred             EeccccchhhHHHHHhcCCC--CCCCcc--eEEecc
Q psy2302          91 HNFNITLLRKVGALAVQGSL--TEGPVD--LVLSCV  122 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~--~~~~~D--lVv~a~  122 (292)
                      +..++++.+.+...++....  .+.++|  ++|.+.
T Consensus        65 ~~~Dv~~~~~v~~~~~~~~~~~~~g~~d~~~lvnnA  100 (259)
T 1oaa_A           65 AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNA  100 (259)
T ss_dssp             EECCTTSHHHHHHHHHHHHHSCCCTTCCEEEEEECC
T ss_pred             EecCCCCHHHHHHHHHHHHhccccccCCccEEEECC
Confidence            88888887777665543211  224567  888764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.22  E-value=0.0094  Score=52.10  Aligned_cols=90  Identities=14%  Similarity=0.204  Sum_probs=61.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.|+ ||+|.++++.|++.|. ++.+++.+.                 ..+.+.+++.+.+..  .++..+.
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~-----------------~~~~~~~~~~~~~~~--~~~~~~~   85 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSN-----------------AEVADALKNELEEKG--YKAAVIK   85 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-----------------HHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC-----------------HHHHHHHHHHHHhcC--CceEEEE
Confidence            456788888875 7999999999999997 566766421                 134556666666654  4566677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        86 ~D~~~~~~v~~~~~~~~~~~g~id~li~nAg  116 (271)
T 4iin_A           86 FDAASESDFIEAIQTIVQSDGGLSYLVNNAG  116 (271)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7887766666555332222357899998763

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.22  E-value=0.018  Score=49.88  Aligned_cols=86  Identities=19%  Similarity=0.316  Sum_probs=57.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+   ..++.+  ++..+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~---~~~~~~--~~~~~~   60 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDI------------------ERARQA---AAEIGP--AAYAVQ   60 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHH---HHHHCT--TEEEEE
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHH---HHHhCC--CceEEE
Confidence            467788999975 7999999999999996 577877532                  122222   333333  345667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        61 ~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag   91 (259)
T 4e6p_A           61 MDVTRQDSIDAAIAATVEHAGGLDILVNNAA   91 (259)
T ss_dssp             CCTTCHHHHHHHHHHHHHHSSSCCEEEECCC
T ss_pred             eeCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7787766666555433223458899998764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.21  E-value=0.02  Score=50.12  Aligned_cols=88  Identities=13%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..  .++..+..
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   77 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNE------------------KELDECLEIWREKG--LNVEGSVC   77 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CceEEEEC
Confidence            56788999975 7999999999999996 577777532                  23444445555443  35666777


Q ss_pred             cccchhhHHHHHhcCCCCC-CCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTE-GPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~-~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+ .+.|++|.+..
T Consensus        78 D~~~~~~~~~~~~~~~~~~~g~id~lv~nAg  108 (273)
T 1ae1_A           78 DLLSRTERDKLMQTVAHVFDGKLNILVNNAG  108 (273)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence            8877666665554322223 57899998763

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.20  E-value=0.013  Score=52.61  Aligned_cols=107  Identities=13%  Similarity=0.115  Sum_probs=64.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++.++|+|.|+ |.+|+.+++.|...|.. ++..+|...... +.                   +.+..+...-.++.+.
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~-~~-------------------~~l~~~~~~~~~~~~~   81 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG-NL-------------------NNVKSIQDHPNYYFVK   81 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC-CG-------------------GGGTTTTTCTTEEEEE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc-ch-------------------hhhhhhccCCCeEEEE
Confidence            56779999998 99999999999999943 455555432110 00                   0111222223466677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHH-----------------HHHHHHHHHHHhCCc-eeecC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE-----------------ARMTINMACNQLGQT-WFESG  146 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~-----------------~r~~in~~~~~~~~p-~i~~~  146 (292)
                      .++++.+.+.+.++.     .++|+||.+.....                 ....+-++|.+.++. +|+.+
T Consensus        82 ~Dl~d~~~~~~~~~~-----~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~S  148 (346)
T 4egb_A           82 GEIQNGELLEHVIKE-----RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVS  148 (346)
T ss_dssp             CCTTCHHHHHHHHHH-----HTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEE
T ss_pred             cCCCCHHHHHHHHhh-----cCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            778776777776632     24899998764211                 124566778888775 55543

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.19  E-value=0.011  Score=53.70  Aligned_cols=103  Identities=13%  Similarity=0.144  Sum_probs=63.7

Q ss_pred             HHHHhcCcEEEEc-CChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          12 YEHIRTLTVIVVG-VGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        12 q~~L~~~~V~vvG-~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ...++.++|+|.| .|.+|+.+++.|... |. +++.+|...-   ++..                      +...-.++
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~---~~~~----------------------~~~~~~v~   72 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTD---RLGD----------------------LVKHERMH   72 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCT---TTGG----------------------GGGSTTEE
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChh---hhhh----------------------hccCCCeE
Confidence            3467789999999 599999999999998 64 6777775431   1100                      00012455


Q ss_pred             EEecccc-chhhHHHHHhcCCCCCCCcceEEeccCCH--HH---------------HHHHHHHHHHhCCceeecCc
Q psy2302          90 VHNFNIT-LLRKVGALAVQGSLTEGPVDLVLSCVDNF--EA---------------RMTINMACNQLGQTWFESGV  147 (292)
Q Consensus        90 ~~~~~i~-~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~---------------r~~in~~~~~~~~p~i~~~~  147 (292)
                      .+..+++ +.+.+.+.+       .++|+||.+....  ..               ...+-++|.+.+..+|+.+.
T Consensus        73 ~~~~Dl~~d~~~~~~~~-------~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS  141 (372)
T 3slg_A           73 FFEGDITINKEWVEYHV-------KKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST  141 (372)
T ss_dssp             EEECCTTTCHHHHHHHH-------HHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECC
T ss_pred             EEeCccCCCHHHHHHHh-------ccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCc
Confidence            6667777 656666665       4789999765421  10               13456677777766766544

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.19  E-value=0.02  Score=50.07  Aligned_cols=101  Identities=12%  Similarity=0.168  Sum_probs=65.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-..+.+.+   .  .-...+.+.+.+.+....  .++..+.
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~--~~~~~~~   79 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPY---D--PASPDDLSETVRLVEAAN--RRIVAAV   79 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCS---C--CCCHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccc---c--ccCHHHHHHHHHHHHhcC--CeEEEEE
Confidence            577888999976 7999999999999997 57888764322211111   1  111234555555555554  4566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        80 ~D~~~~~~v~~~~~~~~~~~g~id~lvnnA  109 (277)
T 3tsc_A           80 VDTRDFDRLRKVVDDGVAALGRLDIIVANA  109 (277)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            788877777665543222335799999876

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.19  E-value=0.012  Score=53.24  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..||+|+|+|.+|+.++..|++.|. +++++|.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            3689999999999999999999995 68888865

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.18  E-value=0.027  Score=51.03  Aligned_cols=33  Identities=30%  Similarity=0.665  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .||+|+|+|.+|+.++..|+..|...+.|+|-|
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            589999999999999999999998559999854

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.17  E-value=0.011  Score=51.41  Aligned_cols=85  Identities=21%  Similarity=0.313  Sum_probs=57.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+     ..++..+.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~-----~~~~~~~~   60 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNE------------------SNIARIREEF-----GPRVHALR   60 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHH-----GGGEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh-----CCcceEEE
Confidence            467889999975 7999999999999997 688877532                  2333333333     23566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.....+.+.|++|.+.
T Consensus        61 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   90 (255)
T 4eso_A           61 SDIADLNEIAVLGAAAGQTLGAIDLLHINA   90 (255)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSEEEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            788776666655433222335789999875

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.17  E-value=0.12  Score=45.22  Aligned_cols=101  Identities=17%  Similarity=0.188  Sum_probs=64.6

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCC--hHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGL--SKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~--~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .++|+|.|+ |.+|+.+++.|...|. ++++++.+.-             .-..  .|++.++ .+..  +.+  +.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-------------~~~~~~~~~~~~~-~l~~--~~v--~~v~~   62 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTI-------------TAANPETKEELID-NYQS--LGV--ILLEG   62 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSC-------------CSSCHHHHHHHHH-HHHH--TTC--EEEEC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCc-------------ccCChHHHHHHHH-HHHh--CCC--EEEEe
Confidence            468999997 9999999999999994 5666654320             0001  2333322 2222  344  44566


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC--HHHHHHHHHHHHHhC-Ccee
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN--FEARMTINMACNQLG-QTWF  143 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~--~~~r~~in~~~~~~~-~p~i  143 (292)
                      ++++.+.+...+       .++|+||.+...  ......+-++|.+.+ +..+
T Consensus        63 D~~d~~~l~~~~-------~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~  108 (307)
T 2gas_A           63 DINDHETLVKAI-------KQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKF  108 (307)
T ss_dssp             CTTCHHHHHHHH-------TTCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEE
T ss_pred             CCCCHHHHHHHH-------hCCCEEEECCcccccccHHHHHHHHHhcCCceEE
Confidence            777667777666       679999998764  333455667788887 6544

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.16  E-value=0.018  Score=50.05  Aligned_cols=89  Identities=19%  Similarity=0.248  Sum_probs=59.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.  ..++..+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~   62 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNR------------------EALEKAEASVREK--GVEARSYV   62 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHTT--TSCEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCcEEEEE
Confidence            466788999975 7999999999999996 577776432                  2344445555543  34566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        63 ~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg   93 (262)
T 1zem_A           63 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAG   93 (262)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            7887766665544322222357899998653

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.16  E-value=0.012  Score=50.18  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.. ..++..+.
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~-~~~~~~~~   63 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSG------------------ERAKAVAEEIANKY-GVKAHGVE   63 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCh------------------HHHHHHHHHHHhhc-CCceEEEE
Confidence            356778888865 7999999999999995 577776432                  23444444454421 23566677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        64 ~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag   94 (248)
T 2pnf_A           64 MNLLSEESINKAFEEIYNLVDGIDILVNNAG   94 (248)
T ss_dssp             CCTTCHHHHHHHHHHHHHHSSCCSEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7777766666555322222357899998764

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.14  E-value=0.024  Score=50.81  Aligned_cols=34  Identities=26%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      .||.|+|+|.+|+.++..|+..|. +++.|+|-+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            379999999999999999999996 4899998543

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.14  E-value=0.012  Score=51.13  Aligned_cols=87  Identities=16%  Similarity=0.180  Sum_probs=55.2

Q ss_pred             HhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      |++++|+|.|+   |++|.++++.|++.|. ++.++|.+. +                  .+...+.+.+..+.  +..+
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~-~------------------~~~~~~~l~~~~~~--~~~~   63 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAE-R------------------LRPEAEKLAEALGG--ALLF   63 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCG-G------------------GHHHHHHHHHHTTC--CEEE
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCH-H------------------HHHHHHHHHHhcCC--cEEE
Confidence            56788999998   6999999999999996 577777432 0                  01112233333333  4556


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|+||.+..
T Consensus        64 ~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag   95 (261)
T 2wyu_A           64 RADVTQDEELDALFAGVKEAFGGLDYLVHAIA   95 (261)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            67777766666554322222357899998764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.13  E-value=0.015  Score=51.13  Aligned_cols=92  Identities=21%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             HHHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          10 ENYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      +....|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..  .++
T Consensus        26 ~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~   84 (275)
T 4imr_A           26 ETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKP------------------GSTAAVQQRIIASG--GTA   84 (275)
T ss_dssp             HHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESST------------------TTTHHHHHHHHHTT--CCE
T ss_pred             cccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHHHHHhcC--CeE
Confidence            4445678888888875 7999999999999997 687877532                  13334455555543  456


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..+..++++.+....+++..... .+.|++|.+..
T Consensus        85 ~~~~~Dv~~~~~~~~~~~~~~~~-g~iD~lvnnAg  118 (275)
T 4imr_A           85 QELAGDLSEAGAGTDLIERAEAI-APVDILVINAS  118 (275)
T ss_dssp             EEEECCTTSTTHHHHHHHHHHHH-SCCCEEEECCC
T ss_pred             EEEEecCCCHHHHHHHHHHHHHh-CCCCEEEECCC
Confidence            66777777666665554322111 47899987764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.13  E-value=0.014  Score=51.66  Aligned_cols=89  Identities=10%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-                 ...+.+++.+.+.  ..++..+.
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~-----------------~~~~~~~~~~~~~--~~~~~~~~  103 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEE-----------------GDANETKQYVEKE--GVKCVLLP  103 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCH-----------------HHHHHHHHHHHTT--TCCEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch-----------------HHHHHHHHHHHhc--CCcEEEEE
Confidence            578889999976 7999999999999996 5777775321                 1233444444443  34667777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+.++++.....+.+.|++|.+.
T Consensus       104 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  133 (291)
T 3ijr_A          104 GDLSDEQHCKDIVQETVRQLGSLNILVNNV  133 (291)
T ss_dssp             SCTTSHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            888876666655543222335789999774

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.13  E-value=0.015  Score=51.16  Aligned_cols=89  Identities=16%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|...                 ..+.+.+.+.+....  .++..+..
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~   86 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGD-----------------AEGVAPVIAELSGLG--ARVIFLRA   86 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC-----------------HHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCC-----------------HHHHHHHHHHHHhcC--CcEEEEEe
Confidence            55677888875 7999999999999997 577776321                 124555556666554  45667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|++|.+..
T Consensus        87 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  116 (280)
T 4da9_A           87 DLADLSSHQATVDAVVAEFGRIDCLVNNAG  116 (280)
T ss_dssp             CTTSGGGHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            887766666555432222357899998764

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.12  E-value=0.022  Score=49.89  Aligned_cols=83  Identities=23%  Similarity=0.230  Sum_probs=58.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+   .  .++..+.
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~~---~--~~~~~~~   82 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAA------------------EKGKALADEL---G--NRAEFVS   82 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHH---C--TTEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCh------------------HHHHHHHHHh---C--CceEEEE
Confidence            577888999976 7999999999999997 578877532                  2333333333   2  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEec
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSC  121 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a  121 (292)
                      .++++.+.+...++.. ..+.+.|++|.+
T Consensus        83 ~Dl~~~~~v~~~~~~~-~~~~~id~lv~~  110 (281)
T 3ppi_A           83 TNVTSEDSVLAAIEAA-NQLGRLRYAVVA  110 (281)
T ss_dssp             CCTTCHHHHHHHHHHH-TTSSEEEEEEEC
T ss_pred             cCCCCHHHHHHHHHHH-HHhCCCCeEEEc
Confidence            8888777777666544 334678888876

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.12  E-value=0.027  Score=47.94  Aligned_cols=87  Identities=15%  Similarity=0.193  Sum_probs=58.5

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCC------eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIG------KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg------~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      +++|+|.| .|++|.++++.|++.|..      ++.++|.+.                  .+.+.+.+.+...  ..++.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~   61 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA------------------ADLEKISLECRAE--GALTD   61 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH------------------HHHHHHHHHHHTT--TCEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH------------------HHHHHHHHHHHcc--CCeee
Confidence            45788887 589999999999999985      788877432                  2344444555433  34677


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..++++.+.+...++.....+.+.|+||.+..
T Consensus        62 ~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag   95 (244)
T 2bd0_A           62 TITADISDMADVRRLTTHIVERYGHIDCLVNNAG   95 (244)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             EEEecCCCHHHHHHHHHHHHHhCCCCCEEEEcCC
Confidence            7788887766666555332222357999998753

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.12  E-value=0.023  Score=51.40  Aligned_cols=37  Identities=32%  Similarity=0.519  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      +.+..||+|+|+|.+|..++..|+..|. .++.|+|-+
T Consensus         3 ~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            3 KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3456799999999999999999999886 789999854

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.11  E-value=0.027  Score=49.45  Aligned_cols=105  Identities=16%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-....+....+.  .-...+.+.+++.+....  .++..+.
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~   82 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIP--ASTPEDLAETADLVKGHN--RRIVTAE   82 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSC--CCCHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccc--cCCHHHHHHHHHHHhhcC--CceEEEE
Confidence            577889999976 6899999999999996 578888653211111111010  011234455555555543  4677778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus        83 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  113 (286)
T 3uve_A           83 VDVRDYDALKAAVDSGVEQLGRLDIIVANAG  113 (286)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            8888777776655432223357999998764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.11  E-value=0.016  Score=52.01  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|.|||+|.+|+.++..|++.|..+++++|.+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            35689999999999999999999998789999975

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.10  E-value=0.012  Score=51.21  Aligned_cols=91  Identities=14%  Similarity=0.154  Sum_probs=57.4

Q ss_pred             HHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          12 YEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        12 q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      +..+.+++|+|.|+ ||+|.++++.|++.|..-+.+.+.+                  ..+.+...+.+.+..+  ++..
T Consensus        21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~------------------~~~~~~~~~~l~~~~~--~~~~   80 (267)
T 4iiu_A           21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRD------------------AAGAQETLNAIVANGG--NGRL   80 (267)
T ss_dssp             ----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC------------------HHHHHHHHHHHHHTTC--CEEE
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc------------------hHHHHHHHHHHHhcCC--ceEE
Confidence            45678888888876 7999999999999997643333221                  1244555566665544  4556


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +..++++.+.+.+.++.....+.+.|+||.+.
T Consensus        81 ~~~Dl~~~~~~~~~~~~~~~~~g~id~li~nA  112 (267)
T 4iiu_A           81 LSFDVANREQCREVLEHEIAQHGAWYGVVSNA  112 (267)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             EEecCCCHHHHHHHHHHHHHHhCCccEEEECC
Confidence            67778776666655543222235789998875

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.09  E-value=0.0083  Score=53.01  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=59.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+.  ..++..+.
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~   63 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNG------------------NALAELTDEIAGG--GGEAAALA   63 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCH------------------HHHHHHHHHHTTT--TCCEEECC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhc--CCcEEEEE
Confidence            466788888876 7899999999999997 477766432                  2444555555442  34566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus        64 ~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg   94 (280)
T 3tox_A           64 GDVGDEALHEALVELAVRRFGGLDTAFNNAG   94 (280)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7887766666555432222357899988754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.07  E-value=0.028  Score=49.30  Aligned_cols=102  Identities=15%  Similarity=0.207  Sum_probs=65.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-....+.   +..  -...+.+.+++.+.+..  .++..+.
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~--~~~~~~~   83 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVT---YAP--ASPEDLDETARLVEDQG--RKALTRV   83 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCC---SCC--CCHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecccccccccc---ccc--cCHHHHHHHHHHHHhcC--CeEEEEE
Confidence            578889999975 6999999999999996 5778876431111111   110  11235555666666543  4566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.++++.....+.+.|++|.+..
T Consensus        84 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           84 LDVRDDAALRELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7888777776655432223358999998753

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.07  E-value=0.013  Score=50.49  Aligned_cols=88  Identities=19%  Similarity=0.174  Sum_probs=58.9

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .+++|+|.|+ ||+|.++++.|++.|.. +.++|.+.                 ..+.+.+.+.+.+..  .++..+..+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~D   62 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYN-VAVNYAGS-----------------KEKAEAVVEEIKAKG--VDSFAIQAN   62 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC-----------------HHHHHHHHHHHHHTT--SCEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCC-----------------HHHHHHHHHHHHhcC--CcEEEEEcc
Confidence            4567778765 79999999999999964 55655422                 135566666666654  456677778


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+...++.....+.+.|++|.+..
T Consensus        63 v~d~~~v~~~~~~~~~~~g~id~lv~nAg   91 (246)
T 3osu_A           63 VADADEVKAMIKEVVSQFGSLDVLVNNAG   91 (246)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88767766555432222357899998753

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.06  E-value=0.014  Score=51.31  Aligned_cols=87  Identities=21%  Similarity=0.198  Sum_probs=54.3

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..+.+++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+   ++..  ++..+
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~---~~~~--~~~~~   79 (272)
T 4dyv_A           24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRL------------------DALQETAA---EIGD--DALCV   79 (272)
T ss_dssp             ----CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHH---HHTS--CCEEE
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHH---HhCC--CeEEE
Confidence            4566777788775 7999999999999997 588877532                  13333333   3333  45566


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+..+++.....+.+.|++|.+..
T Consensus        80 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg  111 (272)
T 4dyv_A           80 PTDVTDPDSVRALFTATVEKFGRVDVLFNNAG  111 (272)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            77777766666555432222357899998753

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.06  E-value=0.01  Score=51.70  Aligned_cols=92  Identities=14%  Similarity=0.228  Sum_probs=62.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|...               -...+.+.+.+.+++.  ..++..+.
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~---------------~~~~~~~~~~~~~~~~--~~~~~~~~   69 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQA---------------KDSDTANKLKDELEDQ--GAKVALYQ   69 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCG---------------GGHHHHHHHHHHHHTT--TCEEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCc---------------cCHHHHHHHHHHHHhc--CCcEEEEE
Confidence            356788999975 7999999999999997 466665321               1123555566666655  35677888


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus        70 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  100 (262)
T 3ksu_A           70 SDLSNEEEVAKLFDFAEKEFGKVDIAINTVG  100 (262)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888777776655432223357999998764

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.06  E-value=0.018  Score=51.13  Aligned_cols=88  Identities=9%  Similarity=0.107  Sum_probs=58.3

Q ss_pred             HHhcCcEEEEcCC-h--HHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGVG-G--VGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~G-g--lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .|++++|+|.|++ +  +|.++++.|++.|.. +.++|.+.                  .+.+.+++...+. +  ++..
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~-~--~~~~   85 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQGD------------------ALKKRVEPLAEEL-G--AFVA   85 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEECSH------------------HHHHHHHHHHHHH-T--CEEE
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcCCH------------------HHHHHHHHHHHhc-C--CceE
Confidence            4788999999984 3  999999999999964 77776431                  1222333333333 3  3566


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +..++++.+.+..+++.....+.+.|++|.+..
T Consensus        86 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG  118 (293)
T 3grk_A           86 GHCDVADAASIDAVFETLEKKWGKLDFLVHAIG  118 (293)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            777888777776665443333468999998764

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.06  E-value=0.013  Score=51.37  Aligned_cols=86  Identities=24%  Similarity=0.330  Sum_probs=55.4

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+   ++..  ++..+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~---~~~~--~~~~~~   63 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPE------------------TDLAGAAA---SVGR--GAVHHV   63 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTT------------------SCHHHHHH---HHCT--TCEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHH---HhCC--CeEEEE
Confidence            567888999976 7999999999999996 588887542                  11222222   2233  344556


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus        64 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg   94 (271)
T 3tzq_B           64 VDLTNEVSVRALIDFTIDTFGRLDIVDNNAA   94 (271)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6777666666555432222357898887653

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.06  E-value=0.013  Score=51.46  Aligned_cols=87  Identities=14%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+++.+.+. +  ++..+..
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~-~--~~~~~~~   84 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDA------------------EACADTATRLSAY-G--DCQAIPA   84 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCH------------------HHHHHHHHHHTTS-S--CEEECCC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc-C--ceEEEEe
Confidence            56778899975 7999999999999996 577766432                  1333334444321 1  5666677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        85 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (276)
T 2b4q_A           85 DLSSEAGARRLAQALGELSARLDILVNNAG  114 (276)
T ss_dssp             CTTSHHHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred             eCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            777766666554432222357899888753

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.05  E-value=0.018  Score=52.68  Aligned_cols=96  Identities=13%  Similarity=0.194  Sum_probs=64.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-....+.         +  +.+.+.+.+.+..  .++..+.
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~---------~--~l~~~~~~~~~~g--~~~~~~~  107 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLL---------G--TIYTAAEEIEAVG--GKALPCI  107 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSC---------C--CHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhH---------H--HHHHHHHHHHhcC--CeEEEEE
Confidence            577889999976 7999999999999996 6888886542221111         1  1233445555543  4677777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus       108 ~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          108 VDVRDEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888777766655433223358999998764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.05  E-value=0.013  Score=51.54  Aligned_cols=87  Identities=14%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             HhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      |++++|+|.|+   ||+|.++++.|++.|. ++.++|.+. +                  .+...+.+.+..+.  +..+
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~-~------------------~~~~~~~l~~~~~~--~~~~   76 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATP-K------------------LEKRVREIAKGFGS--DLVV   76 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSG-G------------------GHHHHHHHHHHTTC--CCEE
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCH-H------------------HHHHHHHHHHhcCC--eEEE
Confidence            66788999998   5999999999999995 577777432 0                  01112233333333  3455


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|+||.+..
T Consensus        77 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag  108 (285)
T 2p91_A           77 KCDVSLDEDIKNLKKFLEENWGSLDIIVHSIA  108 (285)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66777666666554332222357899988763

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.04  E-value=0.022  Score=49.42  Aligned_cols=88  Identities=20%  Similarity=0.345  Sum_probs=56.5

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+   ...-++..+.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~---~~~~~~~~~~   70 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIAD------------------DHGQKVCNNI---GSPDVISFVH   70 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHH---CCTTTEEEEE
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCh------------------hHHHHHHHHh---CCCCceEEEE
Confidence            467888999975 7999999999999996 677776432                  1222222322   2222567777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        71 ~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag  101 (278)
T 2bgk_A           71 CDVTKDEDVRNLVDTTIAKHGKLDIMFGNVG  101 (278)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            7887766666555321112247899997653

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.04  E-value=0.039  Score=46.73  Aligned_cols=78  Identities=15%  Similarity=0.291  Sum_probs=52.2

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .+++++|+|.| .|++|.++++.|++.|.. ++.++|.+.-.   +..          .+           .+  .++.+
T Consensus        15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~---~~~----------~~-----------~~--~~~~~   68 (242)
T 2bka_A           15 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT---FDE----------EA-----------YK--NVNQE   68 (242)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC---CCS----------GG-----------GG--GCEEE
T ss_pred             hhcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC---ccc----------cc-----------cC--CceEE
Confidence            46778999998 599999999999999963 78888754311   100          00           01  23445


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      ..++++.+.+.+.+       .++|+||.+...
T Consensus        69 ~~D~~d~~~~~~~~-------~~~d~vi~~ag~   94 (242)
T 2bka_A           69 VVDFEKLDDYASAF-------QGHDVGFCCLGT   94 (242)
T ss_dssp             ECCGGGGGGGGGGG-------SSCSEEEECCCC
T ss_pred             ecCcCCHHHHHHHh-------cCCCEEEECCCc
Confidence            56666555555444       579999998754

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.03  E-value=0.015  Score=49.47  Aligned_cols=86  Identities=21%  Similarity=0.285  Sum_probs=57.9

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.|+ ||+|.++++.|++.|.. +.++|.+.                  .|.+.+.+.+.+.. ..++..+..++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~~-~~~~~~~~~D~   61 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGARSV------------------DRLEKIAHELMQEQ-GVEVFYHHLDV   61 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCH------------------HHHHHHHHHHHHHH-CCCEEEEECCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHhhc-CCeEEEEEecc
Confidence            467888875 78999999999999964 77776532                  24555555554322 35677778888


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+.+.++.....+.+.|++|.+.
T Consensus        62 ~~~~~v~~~~~~~~~~~g~id~li~~A   88 (235)
T 3l77_A           62 SKAESVEEFSKKVLERFGDVDVVVANA   88 (235)
T ss_dssp             TCHHHHHHHCC-HHHHHSSCSEEEECC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            877777665432211224789999876

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.03  E-value=0.015  Score=50.87  Aligned_cols=91  Identities=18%  Similarity=0.206  Sum_probs=59.7

Q ss_pred             HHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHH-HhhCCCCeEE
Q psy2302          12 YEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL-QNINPDVTIE   89 (292)
Q Consensus        12 q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l-~~~np~v~v~   89 (292)
                      +..|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+ .+..  .++.
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~--~~~~   74 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNL------------------EEASEAAQKLTEKYG--VETM   74 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHHC--CCEE
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhcC--CeEE
Confidence            34677888999964 7999999999999996 577776432                  2344444455 3333  3566


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..++++.+.+...++.....+.+.|+||.+..
T Consensus        75 ~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnAg  108 (267)
T 1vl8_A           75 AFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAG  108 (267)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6777787766666554322222357899998753

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.02  E-value=0.024  Score=50.84  Aligned_cols=33  Identities=24%  Similarity=0.507  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      .||+|+|+|.+|+.++..|+..|. .+++++|.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            479999999999999999999996 689998864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.02  E-value=0.031  Score=48.89  Aligned_cols=101  Identities=18%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-.    .+.-+  ..-...+.+.+.+.+....  .++..+.
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~   77 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDI----ETNEY--PLATSRDLEEAGLEVEKTG--RKAYTAE   77 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCC----TTSCS--CCCCHHHHHHHHHHHHHTT--SCEEEEE
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccc----ccccc--chhhhHHHHHHHHHHHhcC--CceEEEE
Confidence            467889999976 6899999999999996 58888754211    11000  0011234455555555543  4667778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus        78 ~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (287)
T 3pxx_A           78 VDVRDRAAVSRELANAVAEFGKLDVVVANAG  108 (287)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888777766555432222357899998753

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.02  E-value=0.026  Score=50.62  Aligned_cols=34  Identities=44%  Similarity=0.522  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      .||+|+|+|.+|+.++..|+..|. ++++|+|-+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            379999999999999999999984 6799999653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.02  E-value=0.011  Score=51.16  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D   50 (292)
                      .||.|||+|.+|+.++..|.+.|.   .+++++|.+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            589999999999999999999996   478887754

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.01  E-value=0.036  Score=50.16  Aligned_cols=74  Identities=23%  Similarity=0.295  Sum_probs=50.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC---CCCeEEEEe
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN---PDVTIEVHN   92 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n---p~v~v~~~~   92 (292)
                      ..||.|+|+|.+|..++..|+..|. .+|.|+|-+.                  .|++..+..|.+..   +.++++.  
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~------------------~~~~g~~~dl~~~~~~~~~~~v~~--   64 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK------------------DRTKGDALDLEDAQAFTAPKKIYS--   64 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH------------------HHHHHHHHHHHGGGGGSCCCEEEE--
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc------------------hHHHHHHHHHHHHHHhcCCeEEEE--
Confidence            3689999999999999999999884 6799988532                  35555444554443   3455543  


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      .   ..+.           +.++|+||.+...
T Consensus        65 ~---~~~a-----------~~~aDvVii~ag~   82 (318)
T 1ez4_A           65 G---EYSD-----------CKDADLVVITAGA   82 (318)
T ss_dssp             C---CGGG-----------GTTCSEEEECCCC
T ss_pred             C---CHHH-----------hCCCCEEEECCCC
Confidence            1   1122           2789999998754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.00  E-value=0.023  Score=49.63  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=65.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|.. +.++|.+.-    +.+.-+.  .-...+.+...+.+....+  ++..+.
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~   80 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQ----IASVPYP--LATPEELAATVKLVEDIGS--RIVARQ   80 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSC----CTTCSSC--CCCHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEecccc----ccccccc--ccchHHHHHHHHHHHhcCC--eEEEEe
Confidence            578889999975 79999999999999965 777775421    0000000  0112345555566666544  567778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus        81 ~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           81 ADVRDRESLSAALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888777776665432222358999998764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.99  E-value=0.038  Score=49.68  Aligned_cols=33  Identities=33%  Similarity=0.540  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .||+|+|+|.+|+.++..|+..|.-++.|+|-+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~   35 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            589999999999999999999997459999854

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.98  E-value=0.038  Score=46.13  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=26.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ||+|.|+ |++|+.+++.|+..|. ++++++.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEec
Confidence            6999998 9999999999999995 67776643

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.97  E-value=0.046  Score=45.35  Aligned_cols=86  Identities=14%  Similarity=0.129  Sum_probs=54.3

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      .||+|.|+ |++|+.+++.|+..| -++++++.+.                  .|       +.++.+.++  .+..+++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~------------------~~-------~~~~~~~~~--~~~~D~~   52 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNA------------------GK-------ITQTHKDIN--ILQKDIF   52 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCS------------------HH-------HHHHCSSSE--EEECCGG
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCc------------------hh-------hhhccCCCe--EEecccc
Confidence            37999995 999999999999999 4677776532                  11       222224444  4455665


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCH--------HHHHHHHHHHHHhCC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNF--------EARMTINMACNQLGQ  140 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--------~~r~~in~~~~~~~~  140 (292)
                      +.+.  +.+       .++|+||.+....        .....+-+++.+.+.
T Consensus        53 d~~~--~~~-------~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~   95 (221)
T 3ew7_A           53 DLTL--SDL-------SDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVS   95 (221)
T ss_dssp             GCCH--HHH-------TTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCS
T ss_pred             Chhh--hhh-------cCCCEEEECCcCCccccchHHHHHHHHHHHHHhcCC
Confidence            5333  333       6899999887432        223445566666643

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=95.97  E-value=0.012  Score=51.81  Aligned_cols=86  Identities=20%  Similarity=0.253  Sum_probs=56.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+   ++.  .++..+.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~---~~~--~~~~~~~   81 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDG------------------DAADAAAT---KIG--CGAAACR   81 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHH---HHC--SSCEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHH---HcC--CcceEEE
Confidence            577888888864 6999999999999997 688877432                  23333333   333  3455667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus        82 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  112 (277)
T 3gvc_A           82 VDVSDEQQIIAMVDACVAAFGGVDKLVANAG  112 (277)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7777766666554432222357899997753

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.96  E-value=0.014  Score=51.51  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .||.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            589999999999999999999995 788888654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.96  E-value=0.024  Score=48.26  Aligned_cols=89  Identities=17%  Similarity=0.249  Sum_probs=56.9

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|+..|. ++.++|...                 ..+.+.+.+.+.+..  .++..+..
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~-----------------~~~~~~~~~~~~~~~--~~~~~~~~   62 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPA-----------------STSLDATAEEFKAAG--INVVVAKG   62 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTT-----------------CSHHHHHHHHHHHTT--CCEEEEES
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcC-----------------HHHHHHHHHHHHhcC--CcEEEEEC
Confidence            46778888875 7999999999999996 577764211                 123444455555443  35666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|+||.+..
T Consensus        63 D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag   92 (247)
T 2hq1_A           63 DVKNPEDVENMVKTAMDAFGRIDILVNNAG   92 (247)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCCEEEECC-
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            787766666554322112247899988764

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.96  E-value=0.013  Score=51.25  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=55.0

Q ss_pred             HhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      +++++|+|.|+   ||+|.++++.|++.|. ++.++|.+.              + ..    ...+.+.+..+.  +..+
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~--------------~-~~----~~~~~l~~~~~~--~~~~   61 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNE--------------S-LE----KRVRPIAQELNS--PYVY   61 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESST--------------T-TH----HHHHHHHHHTTC--CCEE
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCH--------------H-HH----HHHHHHHHhcCC--cEEE
Confidence            56789999998   6999999999999995 577777432              0 11    112233333333  3455


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|++|.+..
T Consensus        62 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg   93 (275)
T 2pd4_A           62 ELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVA   93 (275)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTSCEEEEEECCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            66777666666554432222357899988764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.96  E-value=0.076  Score=46.68  Aligned_cols=101  Identities=16%  Similarity=0.200  Sum_probs=64.2

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.|+ |.+|+.+++.|...|. ++++++.+.-             .....|.+.++ .+.  .+.+  +.+..++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-------------~~~~~~~~~~~-~~~--~~~~--~~~~~D~   64 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV-------------VSNIDKVQMLL-YFK--QLGA--KLIEASL   64 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC-------------SSCHHHHHHHH-HHH--TTTC--EEECCCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCc-------------ccchhHHHHHH-HHH--hCCe--EEEeCCC
Confidence            468999996 9999999999999984 5666554320             00011332221 121  2344  4556677


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCC------HHHHHHHHHHHHHhC-Ccee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDN------FEARMTINMACNQLG-QTWF  143 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~------~~~r~~in~~~~~~~-~p~i  143 (292)
                      ++.+.+...+       .++|+||.+...      ......+-++|.+.+ +..+
T Consensus        65 ~d~~~l~~~~-------~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~  112 (313)
T 1qyd_A           65 DDHQRLVDAL-------KQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRF  112 (313)
T ss_dssp             SCHHHHHHHH-------TTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEE
T ss_pred             CCHHHHHHHH-------hCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceE
Confidence            7767777766       689999988753      334456677888887 6544

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=95.95  E-value=0.019  Score=49.57  Aligned_cols=85  Identities=20%  Similarity=0.260  Sum_probs=56.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++   ++.  .++..+.
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~---~~~--~~~~~~~   61 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDK------------------AGAERVAG---EIG--DAALAVA   61 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHH---HHC--TTEEEEE
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHH---HhC--CceEEEE
Confidence            467789999986 6899999999999996 588877532                  23333333   232  3456677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+.+.++.....+.+.|++|.+.
T Consensus        62 ~D~~~~~~~~~~~~~~~~~~g~id~li~~A   91 (261)
T 3n74_A           62 ADISKEADVDAAVEAALSKFGKVDILVNNA   91 (261)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            777776666655543222235789998775

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.93  E-value=0.054  Score=46.03  Aligned_cols=98  Identities=10%  Similarity=0.033  Sum_probs=63.3

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +..++|+|.| .|++|..+++.|+..|--++++++.+.-....+                         . .-.++.+..
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~-------------------------~-~~~~~~~~~   74 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP-------------------------Y-PTNSQIIMG   74 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS-------------------------C-CTTEEEEEC
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc-------------------------c-cCCcEEEEe
Confidence            4456899999 599999999999999844788877543211110                         0 013556677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHH---HHHHHHHHHHhCCc-eeec
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEA---RMTINMACNQLGQT-WFES  145 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~---r~~in~~~~~~~~p-~i~~  145 (292)
                      ++++.+.+.+.+       .++|+||.+......   ...+-+++.+.+.. +|+.
T Consensus        75 Dl~d~~~~~~~~-------~~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~i  123 (236)
T 3qvo_A           75 DVLNHAALKQAM-------QGQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFV  123 (236)
T ss_dssp             CTTCHHHHHHHH-------TTCSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCHHHHHHHh-------cCCCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEEE
Confidence            787777777776       678999977654322   23345566666653 4443

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.93  E-value=0.015  Score=51.68  Aligned_cols=88  Identities=11%  Similarity=0.072  Sum_probs=58.0

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .|++++|+|.|++   |+|..+++.|++.|.. +.++|.+.                  .+.+.+.+...+. +.+  ..
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~-~~~--~~   84 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYLSE------------------TFKKRVDPLAESL-GVK--LT   84 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSG------------------GGHHHHHHHHHHH-TCC--EE
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeCCh------------------HHHHHHHHHHHhc-CCe--EE
Confidence            4678899999986   8999999999999964 77777431                  1122233333333 333  56


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +..++++.+.+..+++.....+.+.|++|.+..
T Consensus        85 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG  117 (296)
T 3k31_A           85 VPCDVSDAESVDNMFKVLAEEWGSLDFVVHAVA  117 (296)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            677787767766655433223357899998764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.93  E-value=0.034  Score=50.13  Aligned_cols=34  Identities=35%  Similarity=0.562  Sum_probs=30.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D~   51 (292)
                      .+|.|||+|.+|..++..|.+.|.. +++++|.+.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            6899999999999999999999974 788888653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.93  E-value=0.021  Score=52.55  Aligned_cols=34  Identities=29%  Similarity=0.561  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..||.|+|+|.+|+.+|..|++.|. +++++|.+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            3589999999999999999999985 588888653

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.93  E-value=0.018  Score=50.43  Aligned_cols=89  Identities=13%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|.. +.+.|...                 ..+.+.+.+.+.+..  .++..+.
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~   84 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAK-VAVNYASS-----------------AGAADEVVAAIAAAG--GEAFAVK   84 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC-----------------HHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCC-----------------hHHHHHHHHHHHhcC--CcEEEEE
Confidence            356788888875 79999999999999964 55655321                 124555556666554  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.....+.+.|++|.+.
T Consensus        85 ~D~~d~~~v~~~~~~~~~~~g~id~lv~nA  114 (269)
T 4dmm_A           85 ADVSQESEVEALFAAVIERWGRLDVLVNNA  114 (269)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            788876766655543222335789999875

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.92  E-value=0.015  Score=50.77  Aligned_cols=91  Identities=15%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~   91 (292)
                      ++++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+++.+... ....++..+
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHA------------------ERLEETRQQILAAGVSEQNVNSV   63 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcccCCCceeEE
Confidence            356778888875 8999999999999996 677776432                  2334444444221 123456777


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+...++.....+.+.|+||.+..
T Consensus        64 ~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   95 (278)
T 1spx_A           64 VADVTTDAGQDEILSTTLGKFGKLDILVNNAG   95 (278)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ecccCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            77887766666555322222347899998764

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.92  E-value=0.026  Score=48.25  Aligned_cols=84  Identities=17%  Similarity=0.208  Sum_probs=55.4

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.   .  ++..+..+
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~---~--~~~~~~~D   57 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRY------------------QRLQQQELLLG---N--AVIGIVAD   57 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHG---G--GEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHhc---C--CceEEECC
Confidence            3567888875 7999999999999996 577777532                  23333444442   1  46777778


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+...++.....+.+.|++|.+..
T Consensus        58 ~~~~~~v~~~~~~~~~~~g~id~lvnnAg   86 (235)
T 3l6e_A           58 LAHHEDVDVAFAAAVEWGGLPELVLHCAG   86 (235)
T ss_dssp             TTSHHHHHHHHHHHHHHHCSCSEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence            87766666555432222357899987753

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.92  E-value=0.017  Score=50.27  Aligned_cols=38  Identities=11%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             HHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          12 YEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        12 q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .-++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   61 (260)
T 3un1_A           23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRS   61 (260)
T ss_dssp             HHHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            34577888888875 7999999999999996 67888764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.91  E-value=0.021  Score=50.85  Aligned_cols=82  Identities=18%  Similarity=0.056  Sum_probs=53.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE-e
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH-N   92 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~-~   92 (292)
                      +++++|+|.|+ |.+|+++++.|+..|. +++++|.+.                  .+.+.+.+.+....+ -+++.+ .
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~------------------~~~~~~~~~~~~~~~-~~~~~~~~   68 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA------------------SKLANLQKRWDAKYP-GRFETAVV   68 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHHHHHHHST-TTEEEEEC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc------------------ccHHHHHHHhhccCC-CceEEEEe
Confidence            45789999998 9999999999999985 677766432                  133334444443332 235555 5


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.       +.++|+||.+..
T Consensus        69 ~D~~d~~~~~~~-------~~~~d~vih~A~   92 (342)
T 1y1p_A           69 EDMLKQGAYDEV-------IKGAAGVAHIAS   92 (342)
T ss_dssp             SCTTSTTTTTTT-------TTTCSEEEECCC
T ss_pred             cCCcChHHHHHH-------HcCCCEEEEeCC
Confidence            566654444333       258999998763

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.91  E-value=0.015  Score=50.06  Aligned_cols=87  Identities=22%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             hcCcEEEEc-CChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          16 RTLTVIVVG-VGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        16 ~~~~V~vvG-~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++++|+|.| .|++|.++++.|+. .|. ++.++|.+.                  .+.+.+.+.+.....  ++..+..
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~   61 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDV------------------TRGQAAVQQLQAEGL--SPRFHQL   61 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSH------------------HHHHHHHHHHHHTTC--CCEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCCh------------------HHHHHHHHHHHhcCC--eeEEEEC
Confidence            456788886 58999999999999 886 677777532                  244455555655443  3455667


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+..+++.....+.+.|+||.+..
T Consensus        62 Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag   91 (276)
T 1wma_A           62 DIDDLQSIRALRDFLRKEYGGLDVLVNNAG   91 (276)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            777666666554322112247899997753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.90  E-value=0.035  Score=46.42  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=27.4

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ||+|+| +|.+|+.++..|++.|. +++++|.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            799999 99999999999999986 68887753

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=95.90  E-value=0.02  Score=49.13  Aligned_cols=89  Identities=15%  Similarity=0.193  Sum_probs=58.0

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.| .||+|.++++.|++.|. ++.++|...                 ..|.+.+.+.+++..  .++..+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~   61 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGN-----------------EQKANEVVDEIKKLG--SDAIAVRA   61 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-----------------HHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC-----------------HHHHHHHHHHHHhcC--CcEEEEEc
Confidence            4567788886 57999999999999996 566665311                 124455555665543  34666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|++|.+..
T Consensus        62 D~~~~~~~~~~~~~~~~~~g~id~lv~nAg   91 (246)
T 2uvd_A           62 DVANAEDVTNMVKQTVDVFGQVDILVNNAG   91 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            787766666555432222357899998753

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=95.90  E-value=0.014  Score=50.52  Aligned_cols=86  Identities=13%  Similarity=0.164  Sum_probs=55.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+   .  .++..+.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~---~--~~~~~~~   58 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINE------------------AAGQQLAAEL---G--ERSMFVR   58 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCH------------------HHHHHHHHHH---C--TTEEEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHc---C--CceEEEE
Confidence            467788888875 7999999999999996 577766322                  1233333332   2  3456677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        59 ~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag   89 (253)
T 1hxh_A           59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNAG   89 (253)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7777766665554332222356899988763

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=95.89  E-value=0.013  Score=50.68  Aligned_cols=85  Identities=18%  Similarity=0.235  Sum_probs=53.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+   ++  ..++..+..
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~---~~--~~~~~~~~~   58 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLD------------------EEGAATAR---EL--GDAARYQHL   58 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHH---TT--GGGEEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHH---Hh--CCceeEEEe
Confidence            56788999986 8999999999999996 577776432                  12222222   22  224556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|++|.+..
T Consensus        59 D~~~~~~~~~~~~~~~~~~g~iD~lv~nAg   88 (254)
T 1hdc_A           59 DVTIEEDWQRVVAYAREEFGSVDGLVNNAG   88 (254)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777666665554322112347899887653

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=95.88  E-value=0.031  Score=48.33  Aligned_cols=87  Identities=15%  Similarity=0.169  Sum_probs=58.8

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.| .||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+....  .++..+..
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   61 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHL------------------DTLRVVAQEAQSLG--GQCVPVVC   61 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHS--SEEEEEEC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHcC--CceEEEEC
Confidence            5667788886 57999999999999996 677776432                  24444555565553  35667777


Q ss_pred             cccchhhHHHHHhcCCCC-CCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLT-EGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~-~~~~DlVv~a~  122 (292)
                      ++++.+.+...++..... +.+.|++|.+.
T Consensus        62 Dv~~~~~v~~~~~~~~~~~~g~id~lvnnA   91 (260)
T 2qq5_A           62 DSSQESEVRSLFEQVDREQQGRLDVLVNNA   91 (260)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCceEEEECC
Confidence            888766666554332111 35789999877

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.87  E-value=0.016  Score=51.27  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999996 688888653

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.84  E-value=0.037  Score=50.80  Aligned_cols=77  Identities=17%  Similarity=0.273  Sum_probs=54.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..++|+|||+|+.|...+..|.. .++.++.++|.+.                  .|++.+++++... +.+++...   
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~------------------~~a~~la~~~~~~-~g~~~~~~---  185 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDP------------------LATAKLIANLKEY-SGLTIRRA---  185 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSH------------------HHHHHHHHHHTTC-TTCEEEEC---
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCH------------------HHHHHHHHHHHhc-cCceEEEe---
Confidence            46799999999999999998864 4788999987543                  3666666666442 34444332   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                          +++.+.+       .++|+|+.||.+.
T Consensus       186 ----~~~~eav-------~~aDiVi~aTps~  205 (350)
T 1x7d_A          186 ----SSVAEAV-------KGVDIITTVTADK  205 (350)
T ss_dssp             ----SSHHHHH-------TTCSEEEECCCCS
T ss_pred             ----CCHHHHH-------hcCCEEEEeccCC
Confidence                2344444       6799999999864

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=95.84  E-value=0.027  Score=49.55  Aligned_cols=86  Identities=16%  Similarity=0.276  Sum_probs=56.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+   ++.  .++..+.
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~---~~~--~~~~~~~   79 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNE------------------DAAVRVAN---EIG--SKAFGVR   79 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHH---HHC--TTEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHH---HhC--CceEEEE
Confidence            356788888875 7999999999999997 677777432                  12222222   232  3456667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|++|.+..
T Consensus        80 ~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  110 (277)
T 4dqx_A           80 VDVSSAKDAESMVEKTTAKWGRVDVLVNNAG  110 (277)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7787766666555432222357899998764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.83  E-value=0.019  Score=50.20  Aligned_cols=90  Identities=18%  Similarity=0.221  Sum_probs=61.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++++|.|+ ||+|.++++.|++.|. ++.+.|...                 ..+.+.+.+.+.+..  .++..+.
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~   74 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANS-----------------TKDAEKVVSEIKALG--SDAIAIK   74 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSC-----------------HHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCC-----------------HHHHHHHHHHHHhcC--CcEEEEE
Confidence            467888888875 5999999999999997 465655321                 124555666666654  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.....+.+.|++|.+..
T Consensus        75 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  105 (270)
T 3is3_A           75 ADIRQVPEIVKLFDQAVAHFGHLDIAVSNSG  105 (270)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7888767766655432223357899997753

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.83  E-value=0.036  Score=50.12  Aligned_cols=33  Identities=30%  Similarity=0.631  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      .||.|+|+|.+|+.++..|+..|+ .++.|+|-+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   34 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIK   34 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCc
Confidence            379999999999999999999997 589998854

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.82  E-value=0.041  Score=49.31  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=27.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ||.|+|+|.+|+.++..|++.|. +++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            79999999999999999999995 7888876

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.81  E-value=0.036  Score=48.45  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=62.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-....+.           .+.+.+.+.+....  .++..+..
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~~~~~~   69 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLP-----------GTIHSAAAAVNAAG--GQGLALKC   69 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSC-----------CCHHHHHHHHHHHT--SEEEEEEC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhH-----------HHHHHHHHHHHhcC--CeEEEEeC
Confidence            56788889875 6999999999999997 6888886543221111           12233444455543  46677788


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+..+++.....+.+.|++|.+..
T Consensus        70 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG   99 (274)
T 3e03_A           70 DIREEDQVRAAVAATVDTFGGIDILVNNAS   99 (274)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888777766555432222357899998763

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.81  E-value=0.027  Score=49.18  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=24.8

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeC
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRC-GIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~-Gvg~i~lvD~   49 (292)
                      ||+|+|+ |.+|..+++.+... |..-..++|.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            7999997 99999999998865 6654556664

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=95.80  E-value=0.024  Score=48.49  Aligned_cols=88  Identities=16%  Similarity=0.147  Sum_probs=56.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+..   ..+++.+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~---~~~~~~~~   60 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHS------------------DVGEKAAKSVGT---PDQIQFFQ   60 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHCC---TTTEEEEE
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHhhc---cCceEEEE
Confidence            466788888865 7999999999999996 577777432                  122223333321   23566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        61 ~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag   91 (251)
T 1zk4_A           61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNAG   91 (251)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            7777766666554322112246899998763

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.80  E-value=0.12  Score=46.41  Aligned_cols=87  Identities=18%  Similarity=0.160  Sum_probs=56.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .++.++|+|.|+ |.+|+.+++.|+..|. +++++|...-.              ...+.+.+.+.+.... .-.++.+.
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~   87 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATG--------------HQRNLDEVRSLVSEKQ-WSNFKFIQ   87 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC--------------CHHHHHHHHHHSCHHH-HTTEEEEE
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCcc--------------chhhHHHHhhhccccc-CCceEEEE
Confidence            477889999998 9999999999999985 67777643210              0112222222221110 12355667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.+       .++|+||.+..
T Consensus        88 ~Dl~d~~~~~~~~-------~~~d~vih~A~  111 (352)
T 1sb8_A           88 GDIRNLDDCNNAC-------AGVDYVLHQAA  111 (352)
T ss_dssp             CCTTSHHHHHHHH-------TTCSEEEECCS
T ss_pred             CCCCCHHHHHHHh-------cCCCEEEECCc
Confidence            7777766677666       58999998865

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.79  E-value=0.022  Score=49.34  Aligned_cols=89  Identities=19%  Similarity=0.162  Sum_probs=58.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ |++|.++++.|++.|. ++.++|...                 ..+.+.+.+.+++..+  ++..+.
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~-----------------~~~~~~~~~~l~~~~~--~~~~~~   77 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSS-----------------SKAAEEVVAELKKLGA--QGVAIQ   77 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSC-----------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCc-----------------hHHHHHHHHHHHhcCC--cEEEEE
Confidence            467788999875 7999999999999996 577766411                 1234445555655443  456667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|+||.+.
T Consensus        78 ~D~~~~~~~~~~~~~~~~~~~~~d~vi~~A  107 (274)
T 1ja9_A           78 ADISKPSEVVALFDKAVSHFGGLDFVMSNS  107 (274)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            778776666655532111224789999775

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.79  E-value=0.022  Score=49.78  Aligned_cols=86  Identities=16%  Similarity=0.259  Sum_probs=57.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+   ..++.  .++..+.
T Consensus        24 ~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~---~~~~~--~~~~~~~   79 (266)
T 3grp_A           24 KLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTRE------------------DKLKEI---AADLG--KDVFVFS   79 (266)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHH---HHHHC--SSEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHH---HHHhC--CceEEEE
Confidence            567788888875 7899999999999996 577776432                  122222   23333  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus        80 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  110 (266)
T 3grp_A           80 ANLSDRKSIKQLAEVAEREMEGIDILVNNAG  110 (266)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHTSCCEEEECCC
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7888767666555432222357899998764

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=95.78  E-value=0.022  Score=49.23  Aligned_cols=88  Identities=16%  Similarity=0.217  Sum_probs=57.1

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.| .|++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+....  .++..+..
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   70 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNE------------------YELNECLSKWQKKG--FQVTGSVC   70 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeeEEEEC
Confidence            5677888886 47999999999999996 677776432                  23344445555443  34566667


Q ss_pred             cccchhhHHHHHhcCCCCC-CCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTE-GPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~-~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+ .+.|+||.+..
T Consensus        71 D~~~~~~~~~~~~~~~~~~~~~id~li~~Ag  101 (266)
T 1xq1_A           71 DASLRPEREKLMQTVSSMFGGKLDILINNLG  101 (266)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence            7776666665543221112 46899998754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.78  E-value=0.029  Score=53.65  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=30.0

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..+.+++|.|||+|..|+.+|.+|++.|. +++++|.+
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~   47 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRS   47 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            35678899999999999999999999997 58888765

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=95.77  E-value=0.024  Score=48.79  Aligned_cols=90  Identities=13%  Similarity=0.150  Sum_probs=59.0

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.| .|++|.++++.|++.|. ++.++|...                 ..+.+.+.+.+.+..  .++..+.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~-----------------~~~~~~~~~~l~~~~--~~~~~~~   63 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK-----------------EDEANSVLEEIKKVG--GEAIAVK   63 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-----------------HHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCC-----------------hHHHHHHHHHHHhcC--CceEEEE
Confidence            46778888886 57999999999999996 577766411                 124444555555543  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.....+.+.|+||.+..
T Consensus        64 ~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag   94 (261)
T 1gee_A           64 GDVTVESDVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7787766666554322112247899998753

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.76  E-value=0.02  Score=50.16  Aligned_cols=87  Identities=22%  Similarity=0.208  Sum_probs=62.6

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |+++.++|-| .+|+|.++|+.|++.|. ++.+.|.+                  ..+.+.+.+.+.+..  .++..+..
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~------------------~~~~~~~~~~l~~~g--~~~~~~~~   65 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIR------------------ATLLAESVDTLTRKG--YDAHGVAF   65 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSC------------------HHHHHHHHHHHHHTT--CCEEECCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC------------------HHHHHHHHHHHHhcC--CcEEEEEe
Confidence            5666677764 56899999999999997 57775532                  235555666676654  45667788


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+..+.+++.....+.+.|++|+..
T Consensus        66 Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA   94 (255)
T 4g81_D           66 DVTDELAIEAAFSKLDAEGIHVDILINNA   94 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred             eCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence            88887777766665555567899999875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.76  E-value=0.028  Score=52.03  Aligned_cols=36  Identities=22%  Similarity=0.456  Sum_probs=32.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+..++|+|+|+|++|..+++.+...|. +++++|.+
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~  200 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDIN  200 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4778999999999999999999999998 89998854

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.76  E-value=0.11  Score=45.40  Aligned_cols=102  Identities=18%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.|+ |.+|+.+++.|...| .++++++.+.-..    +        ...|...++ .+.  .+.+  +.+..++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~----~--------~~~~~~~~~-~l~--~~~v--~~v~~D~   65 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTAS----S--------NSEKAQLLE-SFK--ASGA--NIVHGSI   65 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTT----T--------THHHHHHHH-HHH--TTTC--EEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccc----c--------CHHHHHHHH-HHH--hCCC--EEEEecc
Confidence            468999997 999999999999999 4566655432100    0        012332222 121  2344  4556677


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhC-Ccee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLG-QTWF  143 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~-~p~i  143 (292)
                      ++.+.+.+.+       .++|+||.+....  .....+-++|.+.+ +..+
T Consensus        66 ~d~~~l~~~~-------~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~  109 (308)
T 1qyc_A           66 DDHASLVEAV-------KNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRF  109 (308)
T ss_dssp             TCHHHHHHHH-------HTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEE
T ss_pred             CCHHHHHHHH-------cCCCEEEECCcchhhhhHHHHHHHHHhcCCCceE
Confidence            7666777666       5799999988653  23345667888887 6544

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.76  E-value=0.021  Score=50.07  Aligned_cols=90  Identities=16%  Similarity=0.243  Sum_probs=58.5

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC-CCeEEEEe
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP-DVTIEVHN   92 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np-~v~v~~~~   92 (292)
                      |++++|+|.| .||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+... ..++..+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~   64 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSS------------------ERLEETRQIILKSGVSEKQVNSVV   64 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHcCCCCcceEEEE
Confidence            5677888886 57999999999999996 577777532                  234444455544321 11567777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        65 ~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg   95 (280)
T 1xkq_A           65 ADVTTEDGQDQIINSTLKQFGKIDVLVNNAG   95 (280)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7888766666554332222357899998753

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=95.75  E-value=0.014  Score=50.33  Aligned_cols=90  Identities=19%  Similarity=0.262  Sum_probs=52.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-----CCCeE
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-----PDVTI   88 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-----p~v~v   88 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.++|.+.-                  +.+.+.+.+.+..     |..++
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRA------------------AAQETVRLLGGPGSKEGPPRGNH   65 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHH------------------HHHHHHHTC------------CC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChH------------------HHHHHHHHHHhcCccccccCcce
Confidence            56788999965 7999999999999995 6888775431                  2222222222211     12345


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCc-ceEEeccC
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPV-DLVLSCVD  123 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~-DlVv~a~d  123 (292)
                      ..+..++++.+.+.+.++.....+.+. |+||.+..
T Consensus        66 ~~~~~D~~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag  101 (264)
T 2pd6_A           66 AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAG  101 (264)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSSCCSEEEECCC
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence            566677776666655543221112355 99988753

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.74  E-value=0.16  Score=44.81  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=64.4

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCC-hHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGL-SKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~-~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .++|+|.|+ |.+|+.+++.|...| .++++++.+.-             +-.. .|.+.+.+ +.  .+.+  +.+..+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~-------------~~~~~~~~~~l~~-~~--~~~v--~~v~~D   64 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLT-------------PDSTPSSVQLREE-FR--SMGV--TIIEGE   64 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCC-------------TTCCHHHHHHHHH-HH--HTTC--EEEECC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcc-------------cccChHHHHHHHH-hh--cCCc--EEEEec
Confidence            468999996 999999999999999 45777664320             0001 13332221 22  1334  455667


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhC-Cceee
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLG-QTWFE  144 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~-~p~i~  144 (292)
                      +++.+.+...+       .++|+||.+....  .....+-++|.+.+ +..+.
T Consensus        65 ~~d~~~l~~a~-------~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           65 MEEHEKMVSVL-------KQVDIVISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             TTCHHHHHHHH-------TTCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             CCCHHHHHHHH-------cCCCEEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            77667777766       6799999987643  23345667788887 65443

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.74  E-value=0.02  Score=51.51  Aligned_cols=31  Identities=35%  Similarity=0.664  Sum_probs=26.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEE
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILF   47 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lv   47 (292)
                      ...||+|+|+|++|+.++..|++.|. +++++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            45789999999999999999999985 56665

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.74  E-value=0.016  Score=50.24  Aligned_cols=94  Identities=13%  Similarity=0.170  Sum_probs=60.1

Q ss_pred             HHHHHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCe
Q psy2302          11 NYEHIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVT   87 (292)
Q Consensus        11 ~q~~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~   87 (292)
                      .+-.+++++|+|.|++   |+|.++++.|++.|.. +.++|.+.-                 .+.+...+.+.+.. ..+
T Consensus        14 ~~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~-v~~~~~~~~-----------------~~~~~~~~~l~~~~-~~~   74 (267)
T 3gdg_A           14 DQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAA-VAITYASRA-----------------QGAEENVKELEKTY-GIK   74 (267)
T ss_dssp             HHHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCE-EEECBSSSS-----------------SHHHHHHHHHHHHH-CCC
T ss_pred             cccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEeCCcc-----------------hhHHHHHHHHHHhc-CCc
Confidence            4456788999999986   9999999999999964 556553321                 12222333333322 345


Q ss_pred             EEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          88 IEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        88 v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +..+..++++.+.+...++.....+.+.|++|.+..
T Consensus        75 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg  110 (267)
T 3gdg_A           75 AKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAG  110 (267)
T ss_dssp             EECCBCCTTCHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             eeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            667777787766666555433223467899988753

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=95.73  E-value=0.044  Score=47.99  Aligned_cols=89  Identities=17%  Similarity=0.290  Sum_probs=60.0

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.| .|++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+++..  .++..+.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~   77 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGE------------------EGLRTTLKELREAG--VEADGRT   77 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CceEEEE
Confidence            36778888886 47999999999999996 577777432                  24444555565543  3466677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        78 ~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~Ag  108 (277)
T 2rhc_B           78 CDVRSVPEIEALVAAVVERYGPVDVLVNNAG  108 (277)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            7887766666555432223457999998763

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.73  E-value=0.02  Score=49.84  Aligned_cols=84  Identities=12%  Similarity=0.068  Sum_probs=53.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-                  +.   .+.+.+..    +..+.
T Consensus        24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~------------------~~---~~~~~~~~----~~~~~   77 (260)
T 3gem_A           24 TLSSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEH------------------AS---VTELRQAG----AVALY   77 (260)
T ss_dssp             ---CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCC------------------HH---HHHHHHHT----CEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChH------------------HH---HHHHHhcC----CeEEE
Confidence            467888999975 7999999999999996 5888775320                  11   23333332    45566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.++++.....+.+.|++|.+..
T Consensus        78 ~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg  108 (260)
T 3gem_A           78 GDFSCETGIMAFIDLLKTQTSSLRAVVHNAS  108 (260)
T ss_dssp             CCTTSHHHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7777766666555432223457899997753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.73  E-value=0.025  Score=50.98  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=30.8

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+..+|.|||+|.+|..++..|++.|. +++++|.+.
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   64 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTP   64 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCH
Confidence            344699999999999999999999996 688888654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.73  E-value=0.044  Score=47.98  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D   50 (292)
                      ++|.|||+|.+|+.++..|.+.|.. +++++|.+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   35 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            4799999999999999999999863 68887754

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=95.72  E-value=0.044  Score=47.96  Aligned_cols=102  Identities=11%  Similarity=0.146  Sum_probs=64.6

Q ss_pred             HHHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..|++++|+|.| .||+|.++++.|++.|. ++.++|.+.-..      ..........+.+...+.+.+..  .++..+
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   76 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSD------VVGYPLATADDLAETVALVEKTG--RRCISA   76 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCT------TCSSCCCCHHHHHHHHHHHHHTT--CCEEEE
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCcccc------ccccccccHHHHHHHHHHHHhcC--CeEEEE
Confidence            357788999997 57999999999999996 588888643110      00001111234444455555543  456677


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+..+++.....+.+.|++|.+..
T Consensus        77 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           77 KVDVKDRAALESFVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            78888777776655432223358999998753

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=95.72  E-value=0.049  Score=46.93  Aligned_cols=85  Identities=19%  Similarity=0.247  Sum_probs=56.9

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.| .|++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+..  .++..+..++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~D~   60 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYND------------------ATAKAVASEINQAG--GHAVAVKVDV   60 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEECCT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEecC
Confidence            46788886 57999999999999996 677776432                  23444555555443  3466677788


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+.+.++.....+.+.|++|.+.
T Consensus        61 ~~~~~v~~~~~~~~~~~g~id~lv~nA   87 (256)
T 1geg_A           61 SDRDQVFAAVEQARKTLGGFDVIVNNA   87 (256)
T ss_dssp             TSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            776666655543222235799999875

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.71  E-value=0.02  Score=49.71  Aligned_cols=89  Identities=13%  Similarity=0.161  Sum_probs=59.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|.. +.+++...                 ..+.+.+.+.+.+..+  ++..+.
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~   64 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLTYNGA-----------------AEGAATAVAEIEKLGR--SALAIK   64 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSS-----------------CHHHHHHHHHHHTTTS--CCEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCC-----------------HHHHHHHHHHHHhcCC--ceEEEE
Confidence            467889999975 68999999999999974 55553211                 2345555566665544  445667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        65 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   94 (259)
T 3edm_A           65 ADLTNAAEVEAAISAAADKFGEIHGLVHVA   94 (259)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            778776666655543222335789998765

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.71  E-value=0.074  Score=46.91  Aligned_cols=92  Identities=17%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.| .|.+|+.++..|...|. +++.++.+. +                 +..     +.      .++.+..++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-~-----------------~~~-----~~------~~~~~~~Dl   51 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSI-G-----------------NKA-----IN------DYEYRVSDY   51 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC-C---------------------------------CCEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCC-C-----------------ccc-----CC------ceEEEEccc
Confidence            36899999 59999999999999996 677776541 0                 000     10      344556666


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCC-------------HHHHHHHHHHHHHhCCc-eeecC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDN-------------FEARMTINMACNQLGQT-WFESG  146 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-------------~~~r~~in~~~~~~~~p-~i~~~  146 (292)
                      + .+.+.+.+       .++|+||.+...             ......+-++|.+.+++ +|+.+
T Consensus        52 ~-~~~~~~~~-------~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S  108 (311)
T 3m2p_A           52 T-LEDLINQL-------NDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAS  108 (311)
T ss_dssp             C-HHHHHHHT-------TTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             c-HHHHHHhh-------cCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            6 56676665       689999987642             12234567788888876 65543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.70  E-value=0.028  Score=49.40  Aligned_cols=88  Identities=11%  Similarity=0.151  Sum_probs=58.2

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|..+++.|++.|. ++.+++.+.                  .+.+.+.+.+++..  .++..+..
T Consensus        42 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~~  100 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQ------------------KSCDSVVDEIKSFG--YESSGYAG  100 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSH------------------HHHHHHHHHHHTTT--CCEEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCH------------------HHHHHHHHHHHhcC--CceeEEEC
Confidence            45678999965 7999999999999985 566665321                  24444555555443  35666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|+||.+..
T Consensus       101 Dl~d~~~v~~~~~~~~~~~~~id~li~~Ag  130 (285)
T 2c07_A          101 DVSKKEEISEVINKILTEHKNVDILVNNAG  130 (285)
T ss_dssp             CTTCHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            887766666655332222357899998763

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=95.70  E-value=0.046  Score=48.13  Aligned_cols=83  Identities=28%  Similarity=0.379  Sum_probs=58.1

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .|.+.+.   .++  ..+++.+
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~------------------~~~~~~~---~~~--~~~~~~~   67 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDT------------------RKGEAAA---RTM--AGQVEVR   67 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHH---TTS--SSEEEEE
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHH---HHh--cCCeeEE
Confidence            3567889999975 7899999999999996 688877543                  1222222   222  2467778


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+..+++..    .+.|++|.+..
T Consensus        68 ~~Dl~d~~~v~~~~~~~----~~iD~lv~nAg   95 (291)
T 3rd5_A           68 ELDLQDLSSVRRFADGV----SGADVLINNAG   95 (291)
T ss_dssp             ECCTTCHHHHHHHHHTC----CCEEEEEECCC
T ss_pred             EcCCCCHHHHHHHHHhc----CCCCEEEECCc
Confidence            88888877777776532    47899987753

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.70  E-value=0.02  Score=50.73  Aligned_cols=91  Identities=11%  Similarity=0.131  Sum_probs=60.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|.. +.++|.+.-                ..+.+.+++.+.+..  .++..+.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~~  106 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYLPAE----------------EEDAQQVKALIEECG--RKAVLLP  106 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCGGG----------------HHHHHHHHHHHHHTT--CCEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcc----------------hhHHHHHHHHHHHcC--CcEEEEE
Confidence            577889999975 79999999999999964 666654310                123445555555543  4566677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus       107 ~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  137 (294)
T 3r3s_A          107 GDLSDESFARSLVHKAREALGGLDILALVAG  137 (294)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7787766666554432222357899887754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.70  E-value=0.018  Score=53.00  Aligned_cols=123  Identities=14%  Similarity=0.255  Sum_probs=69.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~   92 (292)
                      -++..+|.|||+|.+|..+|.+|++.|. +++++|.+.-....+...       |-.-+.-..+.+... .|++-+...+
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~-------g~~~~~s~~e~~~~a~~~DvVi~~vp   90 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALERE-------GIAGARSIEEFCAKLVKPRVVWLMVP   90 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT-------TCBCCSSHHHHHHHSCSSCEEEECSC
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC-------CCEEeCCHHHHHhcCCCCCEEEEeCC
Confidence            3567899999999999999999999994 688888664222211110       110011112222221 2354444433


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCC-HHHHHHHHHHHHHhCCceeecCccc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDN-FEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      ..     ..++.+......+.+-++||+++.. +.....+.+.+.+.++.++++.+++
T Consensus        91 ~~-----~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A           91 AA-----VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             GG-----GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             HH-----HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence            32     2222221111123456788888765 4455667777888899888876654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.70  E-value=0.016  Score=51.33  Aligned_cols=32  Identities=28%  Similarity=0.448  Sum_probs=28.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .||.|+|+|.+|+.++..|++.|. +++++|.+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            589999999999999999999996 78888754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.69  E-value=0.09  Score=47.83  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|+|+|++|...++.+...|..++..+|.+
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~  213 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDID  213 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            36789999999999999999999999889888853

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=95.69  E-value=0.017  Score=49.97  Aligned_cols=86  Identities=21%  Similarity=0.340  Sum_probs=54.9

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|.++++.|++.|. ++.++|.+.              +      +...+.+.+.  ..++..+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~--------------~------~~~~~~l~~~--~~~~~~~~~   58 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGD--------------P------APALAEIARH--GVKAVHHPA   58 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSC--------------C------HHHHHHHHTT--SCCEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc--------------h------HHHHHHHHhc--CCceEEEeC
Confidence            45678888876 8999999999999996 576665321              1      1223344433  235666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        59 D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag   88 (255)
T 2q2v_A           59 DLSDVAQIEALFALAEREFGGVDILVNNAG   88 (255)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777766666555322112347899998753

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=95.68  E-value=0.027  Score=48.48  Aligned_cols=84  Identities=23%  Similarity=0.310  Sum_probs=53.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.++|.+.-                  +.+.+.+.   +.  .++..+..
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~---~~--~~~~~~~~   65 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNS------------------GGEAQAKK---LG--NNCVFAPA   65 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTS------------------SHHHHHHH---HC--TTEEEEEC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcH------------------hHHHHHHH---hC--CceEEEEc
Confidence            56788999965 7999999999999996 5777765321                  12222222   22  34666677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+.+.++.....+.+.|+||.+.
T Consensus        66 D~~~~~~v~~~~~~~~~~~g~id~li~~A   94 (265)
T 2o23_A           66 DVTSEKDVQTALALAKGKFGRVDVAVNCA   94 (265)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence            77776666655432211224789998875

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.68  E-value=0.028  Score=51.01  Aligned_cols=35  Identities=20%  Similarity=0.431  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC------CeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI------GKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv------g~i~lvD~D~   51 (292)
                      ..||.|||+|.+|+.++..|++.|.      .+++++|.+.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~   48 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE   48 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcCh
Confidence            3589999999999999999999983      4788888653

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=95.68  E-value=0.023  Score=49.31  Aligned_cols=86  Identities=19%  Similarity=0.229  Sum_probs=57.7

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEE-eCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILF-DYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lv-D~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++++|+|.|+ ||+|.++++.|++.|.. +.+. +.+                  ..+.+.+.+.+.+..  .++..+..
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~~~r~------------------~~~~~~~~~~~~~~~--~~~~~~~~   61 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYN-IVINYARS------------------KKAALETAEEIEKLG--VKVLVVKA   61 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHTTT--CCEEEEEC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-EEEEcCCC------------------HHHHHHHHHHHHhcC--CcEEEEEc
Confidence            4567777765 79999999999999975 4443 321                  235555666666544  45667778


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+..+++.....+.+.|++|.+.
T Consensus        62 Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   90 (258)
T 3oid_A           62 NVGQPAKIKEMFQQIDETFGRLDVFVNNA   90 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            88877777665543322335789999876

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.68  E-value=0.027  Score=49.06  Aligned_cols=85  Identities=16%  Similarity=0.244  Sum_probs=54.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.   .++.  .++..+.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~---~~~~--~~~~~~~   58 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREE------------------RLLAEAV---AALE--AEAIAVV   58 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHH---HTCC--SSEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHH---HHhc--CceEEEE
Confidence            366788999975 7999999999999996 677776432                  1222222   2222  3466677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        59 ~D~~~~~~v~~~~~~~~~~~g~iD~lvnnA   88 (263)
T 2a4k_A           59 ADVSDPKAVEAVFAEALEEFGRLHGVAHFA   88 (263)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            777776666655433222235789998775

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.67  E-value=0.035  Score=48.51  Aligned_cols=88  Identities=17%  Similarity=0.173  Sum_probs=58.1

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ ||+|.++++.|++.|.. +.+.+...                 ..+.+.+++.+....  .++..+..
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~   84 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFT-VVINYAGK-----------------AAAAEEVAGKIEAAG--GKALTAQA   84 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEEESSC-----------------SHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEcCCC-----------------HHHHHHHHHHHHhcC--CeEEEEEc
Confidence            46778888876 79999999999999974 44543211                 235556666666654  35666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+..+++.....+.+.|++|.+.
T Consensus        85 Dl~~~~~v~~~~~~~~~~~g~iD~lvnnA  113 (267)
T 3u5t_A           85 DVSDPAAVRRLFATAEEAFGGVDVLVNNA  113 (267)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            88876776665543222335799999876

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=95.67  E-value=0.0046  Score=58.54  Aligned_cols=35  Identities=26%  Similarity=0.530  Sum_probs=33.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCC--CeEEEEe
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGI--GKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gv--g~i~lvD   48 (292)
                      .|++++|+|+|+|+.|..++..|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            4678999999999999999999999999  8999999

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=95.67  E-value=0.031  Score=48.69  Aligned_cols=92  Identities=11%  Similarity=0.121  Sum_probs=57.2

Q ss_pred             HHHHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC-CcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          12 YEHIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDY-DKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        12 q~~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~-D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      +.++++++|+|.| .||+|.++++.|++.|. ++.++|. +.                  .+.+.+.+.+.+..+ .++.
T Consensus         6 ~~~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~~~~-~~~~   65 (276)
T 1mxh_A            6 HEASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSE------------------GAAQRLVAELNAARA-GSAV   65 (276)
T ss_dssp             -----CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCH------------------HHHHHHHHHHHHHST-TCEE
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCh------------------HHHHHHHHHHHHhcC-CceE
Confidence            4567788888886 57999999999999996 6777774 21                  244555555655422 3566


Q ss_pred             EEeccccch----hhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          90 VHNFNITLL----RKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~~----~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..++++.    +.+...++.....+.+.|+||.+..
T Consensus        66 ~~~~Dl~~~~~~~~~~~~~~~~~~~~~g~id~lv~nAg  103 (276)
T 1mxh_A           66 LCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNAS  103 (276)
T ss_dssp             EEECCCSSSTTHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeccCCCccccHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            677777776    5555544322112357899998763

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=95.67  E-value=0.025  Score=48.80  Aligned_cols=85  Identities=21%  Similarity=0.225  Sum_probs=55.7

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ ||+|.++++.|++.|.. +.++|.+.                  .+.+.+.+.+..     ++..+..
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~-----~~~~~~~   62 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAK-VIGTATSE------------------SGAQAISDYLGD-----NGKGMAL   62 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSH------------------HHHHHHHHHHGG-----GEEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHhcc-----cceEEEE
Confidence            56778888875 78999999999999964 67766432                  234444444432     2456667


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|++|.+..
T Consensus        63 Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg   92 (248)
T 3op4_A           63 NVTNPESIEAVLKAITDEFGGVDILVNNAG   92 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             eCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777766666555432223357899998753

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.66  E-value=0.029  Score=49.34  Aligned_cols=94  Identities=14%  Similarity=0.150  Sum_probs=58.3

Q ss_pred             HHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          11 NYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        11 ~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ....|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                 ..+.+.+.+.+.+.. ..++.
T Consensus        17 ~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~-----------------~~~~~~~~~~l~~~~-~~~~~   77 (288)
T 2x9g_A           17 RGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNS-----------------AEAAVSLADELNKER-SNTAV   77 (288)
T ss_dssp             -----CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSC-----------------HHHHHHHHHHHHHHS-TTCEE
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCc-----------------hHHHHHHHHHHHhhc-CCceE
Confidence            345678888888864 7999999999999996 577776432                 024445555554222 24566


Q ss_pred             EEeccccc----hhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          90 VHNFNITL----LRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~----~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..++++    .+.+..+++.....+.+.|+||.+..
T Consensus        78 ~~~~Dv~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAG  115 (288)
T 2x9g_A           78 VCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNAS  115 (288)
T ss_dssp             EEECCCSCSTTHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEeecCCccCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            77777877    56665554322212357899998753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.64  E-value=0.031  Score=51.46  Aligned_cols=36  Identities=22%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .++.++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~  198 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVN  198 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            3678999999999999999999999998 89998854

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.64  E-value=0.035  Score=50.15  Aligned_cols=93  Identities=20%  Similarity=0.233  Sum_probs=60.7

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ ||+|.++++.|++.|.. +.+.+.+..             +-...+.+.+++.+....  .++..+..
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~-------------~r~~~~~~~l~~~~~~~~--~~~~~~~~   66 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIV-------------GRNASNVEAIAGFARDND--VDLRTLEL   66 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTT-------------TTTHHHHHHHHHHHHHHT--CCEEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCccc-------------ccCHHHHHHHHHHHHhcC--CcEEEEEe
Confidence            45677888875 89999999999999964 555554321             112345566666666654  35667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|+||.+..
T Consensus        67 Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           67 DVQSQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             ecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888767766655432222358999998764

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.63  E-value=0.04  Score=49.42  Aligned_cols=101  Identities=15%  Similarity=0.254  Sum_probs=63.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-. .++.   +..  -...+.+.+.+.+.+..  .++..+.
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~-~~~~---~~~--~~~~~~~~~~~~~~~~~--~~~~~~~  113 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQ-PNLD---YAQ--GSPEELKETVRLVEEQG--RRIIARQ  113 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCC-TTCC---SCC--CCHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEeccccc-cccc---ccc--cCHHHHHHHHHHHHhcC--CeEEEEE
Confidence            467788888865 7999999999999996 57777754311 1111   100  01224444445555543  4567778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+..+++.....+.+.|++|.+..
T Consensus       114 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          114 ADVRDLASLQAVVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888777776655432223358999998763

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.63  E-value=0.11  Score=45.94  Aligned_cols=97  Identities=19%  Similarity=0.172  Sum_probs=62.4

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.|+ |.+|+.+++.|...|. ++++++.+.-                 .|...+. .+..  +.+  +.+..++
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~-----------------~~~~~~~-~l~~--~~v--~~v~~Dl   67 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPNS-----------------SKTTLLD-EFQS--LGA--IIVKGEL   67 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTTC-----------------SCHHHHH-HHHH--TTC--EEEECCT
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCCC-----------------chhhHHH-Hhhc--CCC--EEEEecC
Confidence            358999996 9999999999999994 5666654320                 1222221 1221  234  4456677


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhC-Ccee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLG-QTWF  143 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~-~p~i  143 (292)
                      ++.+.+...+       .++|+||.+....  .....+-++|.+.+ +..+
T Consensus        68 ~d~~~l~~a~-------~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~  111 (318)
T 2r6j_A           68 DEHEKLVELM-------KKVDVVISALAFPQILDQFKILEAIKVAGNIKRF  111 (318)
T ss_dssp             TCHHHHHHHH-------TTCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEE
T ss_pred             CCHHHHHHHH-------cCCCEEEECCchhhhHHHHHHHHHHHhcCCCCEE
Confidence            7667777766       6799999987643  23345567778877 6544

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.62  E-value=0.05  Score=49.54  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      ...||.|+|+|.+|+.+|..|+..|+ +++.|+|-
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di   54 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDV   54 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence            34799999999999999999999997 68999885

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=95.62  E-value=0.03  Score=47.80  Aligned_cols=85  Identities=16%  Similarity=0.163  Sum_probs=54.5

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHH-HhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL-QNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l-~~~np~v~v~~~~~~   94 (292)
                      +++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+ .+.  ..++..+..+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~~D   60 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSA------------------ETLEETARTHWHAY--ADKVLRVRAD   60 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHSTTT--GGGEEEEECC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhc--CCcEEEEEec
Confidence            467888875 7999999999999995 688877432                  1333333333 222  2346667777


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +++.+.+.+.++.....+.+.|+||.+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~id~li~~A   88 (250)
T 2cfc_A           61 VADEGDVNAAIAATMEQFGAIDVLVNNA   88 (250)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            7776666655432211224789999875

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.62  E-value=0.044  Score=49.78  Aligned_cols=33  Identities=36%  Similarity=0.446  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      ..||.|+|+|.+|..++..|+..+. .+|.|+|-
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di   42 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            4689999999999999999998884 67999885

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.62  E-value=0.016  Score=49.79  Aligned_cols=83  Identities=17%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+   ++  .  +..+..
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~---~~--~--~~~~~~   56 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEE------------------GPLREAAE---AV--G--AHPVVM   56 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHH---TT--T--CEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHH---Hc--C--CEEEEe
Confidence            56788999975 7999999999999996 577766432                  12222222   12  1  445556


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        57 D~~~~~~~~~~~~~~~~~~g~id~lvn~Ag   86 (245)
T 1uls_A           57 DVADPASVERGFAEALAHLGRLDGVVHYAG   86 (245)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            676656555544322122356899888753

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.61  E-value=0.043  Score=49.40  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D   50 (292)
                      +...+|.|||+|.+|+.++..|++.|+   .+++++|.+
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            345689999999999999999999995   578887754

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.61  E-value=0.094  Score=46.55  Aligned_cols=83  Identities=12%  Similarity=0.167  Sum_probs=51.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|+++++.|+..|. +++++|.+.-             ....       +.+..+...-+++.+..
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~-------------~~~~-------~~~~~~~~~~~~~~~~~   59 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSG-------------EFAS-------WRLKELGIENDVKIIHM   59 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCS-------------TTTT-------HHHHHTTCTTTEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCc-------------cccc-------ccHhhccccCceeEEEC
Confidence            35678999998 9999999999999985 6777664320             0000       12223322234556666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.     .++|+||.+..
T Consensus        60 Dl~d~~~~~~~~~~-----~~~d~vih~A~   84 (345)
T 2z1m_A           60 DLLEFSNIIRTIEK-----VQPDEVYNLAA   84 (345)
T ss_dssp             CTTCHHHHHHHHHH-----HCCSEEEECCC
T ss_pred             CCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence            77666666666532     14699988754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.61  E-value=0.0068  Score=56.34  Aligned_cols=37  Identities=24%  Similarity=0.485  Sum_probs=35.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +|++.||+|+|+|..|..++++|...|+++++++|..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            6788999999999999999999999999999999975

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.59  E-value=0.026  Score=50.79  Aligned_cols=35  Identities=11%  Similarity=0.230  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D   50 (292)
                      ..++|.|||+|..|..++..|... |+.++.++|.+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~  169 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRT  169 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSS
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            467899999999999999999988 88899998753

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.59  E-value=0.024  Score=49.49  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=28.4

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.++|+|.|+|.+|+.+++.|...|. +++.++.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r   34 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRR   34 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            35789999999999999999999996 5777664

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.58  E-value=0.0055  Score=54.06  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++++|+|+|+|++|..++..|++.| .+++++|.+
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R~  151 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNRT  151 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEECC
Confidence            56889999999999999999999999 789997643

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.58  E-value=0.1  Score=43.98  Aligned_cols=35  Identities=20%  Similarity=0.112  Sum_probs=27.8

Q ss_pred             hcCcEEEEc-CChHHHHHHHHHHHhC-CCeEEEEeCC
Q psy2302          16 RTLTVIVVG-VGGVGSVTAEMLTRCG-IGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG-~GglGs~va~~La~~G-vg~i~lvD~D   50 (292)
                      ..++|+|.| .|++|+.+++.|++.| --++++++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            357899998 5999999999999995 2467776653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.58  E-value=0.0094  Score=55.51  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=36.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +|++.||+|+|+|..|..+++.|..+|+++++++|.+-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            78899999999999999999999999999999999864

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.58  E-value=0.029  Score=49.25  Aligned_cols=88  Identities=11%  Similarity=0.104  Sum_probs=57.9

Q ss_pred             HHHhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          13 EHIRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        13 ~~L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ..+++++|+|.|+   +|+|.++++.|++.|. ++.++|.+.                    .+...+.+.+..+.  +.
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~--------------------~~~~~~~l~~~~~~--~~   78 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ--------------------FKDRVEKLCAEFNP--AA   78 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT--------------------CHHHHHHHHGGGCC--SE
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch--------------------HHHHHHHHHHhcCC--ce
Confidence            4577889999995   3599999999999996 588877543                    01122334344444  44


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..++++.+.+.++++.....+.+.|+||.+..
T Consensus        79 ~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg  112 (280)
T 3nrc_A           79 VLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIA  112 (280)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHCSSCCEEEECCC
T ss_pred             EEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            5667777766666555433223457899997753

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.58  E-value=0.046  Score=47.88  Aligned_cols=86  Identities=16%  Similarity=0.231  Sum_probs=56.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+                   .+.+...+.+.+.  ..++..+.
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~--~~~~~~~~   85 (273)
T 3uf0_A           28 SLAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRT-------------------DGVKEVADEIADG--GGSAEAVV   85 (273)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS-------------------THHHHHHHHHHTT--TCEEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCH-------------------HHHHHHHHHHHhc--CCcEEEEE
Confidence            366788999975 6999999999999997 57777632                   1333444455443  34667777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+....+.+... .+.+.|++|.+.
T Consensus        86 ~Dv~d~~~v~~~~~~~~-~~g~iD~lv~nA  114 (273)
T 3uf0_A           86 ADLADLEGAANVAEELA-ATRRVDVLVNNA  114 (273)
T ss_dssp             CCTTCHHHHHHHHHHHH-HHSCCCEEEECC
T ss_pred             ecCCCHHHHHHHHHHHH-hcCCCcEEEECC
Confidence            78877666554422111 125789999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.57  E-value=0.037  Score=49.28  Aligned_cols=33  Identities=24%  Similarity=0.540  Sum_probs=29.1

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.||| +|.+|+.++..|++.|. +++++|.+.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECCc
Confidence            5899999 99999999999999997 688888553

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=95.56  E-value=0.039  Score=47.16  Aligned_cols=84  Identities=19%  Similarity=0.318  Sum_probs=53.9

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE-EEEe
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI-EVHN   92 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v-~~~~   92 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+   .  .++ ..+.
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~---~--~~~~~~~~   64 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREA------------------AALDRAAQEL---G--AAVAARIV   64 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHH---G--GGEEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh---c--ccceeEEE
Confidence            56788999965 8999999999999996 577776432                  1333333333   1  234 5566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.... +.+.|+||.+..
T Consensus        65 ~D~~~~~~~~~~~~~~~~-~~~id~li~~Ag   94 (254)
T 2wsb_A           65 ADVTDAEAMTAAAAEAEA-VAPVSILVNSAG   94 (254)
T ss_dssp             CCTTCHHHHHHHHHHHHH-HSCCCEEEECCC
T ss_pred             EecCCHHHHHHHHHHHHh-hCCCcEEEECCc
Confidence            677766666555432222 257899998753

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.55  E-value=0.052  Score=48.50  Aligned_cols=35  Identities=23%  Similarity=0.554  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ...+|.|||+|.+|..++..|++.|. +++++|.+.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45789999999999999999999997 588887654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.54  E-value=0.012  Score=53.19  Aligned_cols=89  Identities=8%  Similarity=0.090  Sum_probs=62.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +.+|+|+|+|.+|..+++.|...|.  ++++|.|.-                  +++ ++    +  ..+  ..+..+.+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~~------------------~~~-~~----~--~~~--~~i~gd~~  165 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDENV------------------RKK-VL----R--SGA--NFVHGDPT  165 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGGG------------------HHH-HH----H--TTC--EEEESCTT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCChh------------------hhh-HH----h--CCc--EEEEeCCC
Confidence            4589999999999999999999887  889887651                  333 22    2  233  34555555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQ  140 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~  140 (292)
                      +.+.+.+.      ..+++|.|+.++++.+.-..+-..+++.+.
T Consensus       166 ~~~~L~~a------~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~  203 (336)
T 1lnq_A          166 RVSDLEKA------NVRGARAVIVDLESDSETIHCILGIRKIDE  203 (336)
T ss_dssp             SHHHHHHT------CSTTEEEEEECCSSHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHhc------ChhhccEEEEcCCccHHHHHHHHHHHHHCC
Confidence            54444332      136899999999988777777777777654

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.54  E-value=0.049  Score=46.63  Aligned_cols=79  Identities=20%  Similarity=0.400  Sum_probs=50.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|.++++.|++.|. ++.++|.+.-....                      +.++ +  ++..+..
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~----------------------~~~~-~--~~~~~~~   57 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQE----------------------LEKY-P--GIQTRVL   57 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGG----------------------GGGS-T--TEEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHH----------------------HHhc-c--CceEEEe
Confidence            56788888876 7999999999999995 68887754311100                      0011 1  3555666


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.    +.+.|+||.+..
T Consensus        58 D~~~~~~~~~~~~~----~~~id~lv~~Ag   83 (246)
T 2ag5_A           58 DVTKKKQIDQFANE----VERLDVLFNVAG   83 (246)
T ss_dssp             CTTCHHHHHHHHHH----CSCCSEEEECCC
T ss_pred             eCCCHHHHHHHHHH----hCCCCEEEECCc
Confidence            67665555544332    257888887653

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=95.54  E-value=0.026  Score=48.89  Aligned_cols=88  Identities=18%  Similarity=0.306  Sum_probs=56.9

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChH-HHHHHHHHHhhCCCCeEEEEe
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSK-VEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~K-a~a~~~~l~~~np~v~v~~~~   92 (292)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+ .+.+.+.+.+.. ..++..+.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~-~~~~~~~~   61 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGD------------------AAEIEKVRAGLAAQH-GVKVLYDG   61 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSC------------------HHHHHHHHHHHHHHH-TSCEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCc------------------chHHHHHHHHHHhcc-CCcEEEEE
Confidence            45677888865 7999999999999996 477765322                  23 444455554431 23566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        62 ~D~~~~~~v~~~~~~~~~~~g~iD~lv~~A   91 (260)
T 1x1t_A           62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNA   91 (260)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            788776666655543222235789999875

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=95.53  E-value=0.02  Score=49.48  Aligned_cols=85  Identities=20%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++++|.|+ ||+|.++++.|++.|. ++.++|.+.-..                  +.+.+.+   .  .++..+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~------------------~~~~~~~---~--~~~~~~~   59 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAG------------------EEPAAEL---G--AAVRFRN   59 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC-----------------------------------CEEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHH------------------HHHHHHh---C--CceEEEE
Confidence            356788899876 7999999999999996 477777543111                  1111111   1  2345566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        60 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   89 (257)
T 3tpc_A           60 ADVTNEADATAALAFAKQEFGHVHGLVNCA   89 (257)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            677766666555433222235788888765

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.53  E-value=0.061  Score=47.65  Aligned_cols=100  Identities=17%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++++|.|+ ||+|.++++.|++.|.. +.++|.+.-.    ....+.  .-...+.+.+.+.+....  .++..+.
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~   95 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVCKQL----DGVKLP--MSTPDDLAETVRQVEALG--RRIIASQ   95 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCC----TTCCSC--CCCHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeccccc----cccccc--ccCHHHHHHHHHHHHhcC--CceEEEE
Confidence            577888999976 69999999999999964 6777754210    000000  001234455555565544  4567778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.....+.+.|++|.+.
T Consensus        96 ~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nA  125 (299)
T 3t7c_A           96 VDVRDFDAMQAAVDDGVTQLGRLDIVLANA  125 (299)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            888877777665543222335799999765

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.53  E-value=0.028  Score=51.66  Aligned_cols=90  Identities=14%  Similarity=0.181  Sum_probs=53.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHH--hhCCCC---
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQ--NINPDV---   86 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~--~~np~v---   86 (292)
                      .||.|||+|.+|+.++..|++.|.      .+++++|.+.-             ..++.|++.+++.-.  ..-|..   
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~-------------~~~~~~~~~l~~~~~~~~~~~~~~~~   88 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF-------------VNGERMVDIINNKHENTKYLKGVPLP   88 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC----------------CCHHHHHHHHCBCTTTSTTCBCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh-------------hhhHHHHHHHHhcCcccccCCcccCc
Confidence            479999999999999999999982      46888875431             012345554443210  011121   


Q ss_pred             -eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHH
Q psy2302          87 -TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMA  134 (292)
Q Consensus        87 -~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~  134 (292)
                       .+...       .+..+.+       .++|+||.|+-....+..+.+.
T Consensus        89 ~~i~~~-------~~~~ea~-------~~aDvVilav~~~~~~~vl~~i  123 (375)
T 1yj8_A           89 HNIVAH-------SDLASVI-------NDADLLIFIVPCQYLESVLASI  123 (375)
T ss_dssp             TTEEEE-------SSTHHHH-------TTCSEEEECCCHHHHHHHHHHH
T ss_pred             CCeEEE-------CCHHHHH-------cCCCEEEEcCCHHHHHHHHHHH
Confidence             12221       1222222       6799999999876666666554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.52  E-value=0.13  Score=44.71  Aligned_cols=94  Identities=11%  Similarity=0.067  Sum_probs=60.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +|+|.|+ |.+|+.+++.|...+-.++.+++.+.-....+                        ..+.  ++.+..++++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~------------------------~~~~--v~~~~~D~~d   55 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD------------------------WRGK--VSVRQLDYFN   55 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG------------------------GBTT--BEEEECCTTC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh------------------------hhCC--CEEEEcCCCC
Confidence            7999996 99999999999987334677766543111100                        0122  4455667776


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCC-------HHHHHHHHHHHHHhCCc-eeec
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDN-------FEARMTINMACNQLGQT-WFES  145 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~-------~~~r~~in~~~~~~~~p-~i~~  145 (292)
                      .+.+...+       .++|+||.+...       ......+-++|.+.++. +++.
T Consensus        56 ~~~l~~~~-------~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~  104 (289)
T 3e48_A           56 QESMVEAF-------KGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFI  104 (289)
T ss_dssp             HHHHHHHT-------TTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHH-------hCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEE
Confidence            66666655       689999988653       12234566778888764 4443

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.52  E-value=0.048  Score=49.08  Aligned_cols=73  Identities=23%  Similarity=0.225  Sum_probs=49.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhC-CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC---CCCeEEEEec
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCG-IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN---PDVTIEVHNF   93 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~G-vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n---p~v~v~~~~~   93 (292)
                      .||.|+|+|.+|..++..|+..+ +++|.|+|-+.                  .|++..+..|.+..   ..++++. . 
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~------------------~k~~g~a~dl~~~~~~~~~~~v~~-~-   60 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDR------------------KLAQAHAEDILHATPFAHPVWVWA-G-   60 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH------------------HHHHHHHHHHHTTGGGSCCCEEEE-C-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh------------------hHHHHHHHHHHHhHhhcCCeEEEE-C-
Confidence            48999999999999999999887 46799988542                  35555445555432   3455553 1 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                         +.+.           +.++|+||.+...
T Consensus        61 ---~~~a-----------~~~aD~Vii~ag~   77 (310)
T 2xxj_A           61 ---SYGD-----------LEGARAVVLAAGV   77 (310)
T ss_dssp             ---CGGG-----------GTTEEEEEECCCC
T ss_pred             ---CHHH-----------hCCCCEEEECCCC
Confidence               1122           2789999988743

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=95.51  E-value=0.04  Score=47.82  Aligned_cols=86  Identities=14%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.| .|++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+..     ++..+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~-----~~~~~~   59 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILD------------------EEGKAMAAELAD-----AARYVH   59 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHTGG-----GEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHhhc-----CceEEE
Confidence            36678899997 47999999999999996 577776432                  133333333321     255666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.++.....+.+.|+||.+..
T Consensus        60 ~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag   90 (260)
T 1nff_A           60 LDVTQPAQWKAAVDTAVTAFGGLHVLVNNAG   90 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7777666666555322222347899988753

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=95.51  E-value=0.13  Score=43.49  Aligned_cols=88  Identities=17%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ..++++|+|+|+-|..++..|.+.|..-+.++|+|.-. ..                         ++ .+.+-...   
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~~~-~~-------------------------~~-g~~Vlg~~---   60 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPTR-RA-------------------------VL-GVPVVGDD---   60 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC----C-------------------------BT-TBCEEESG---
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCccc-Cc-------------------------CC-CeeEECCH---
Confidence            34689999999999999999999898889999977421 00                         11 23332211   


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                         +.+.++..      ...+.++.+..+...|..+.+.+.+.+..+
T Consensus        61 ---~~~~~~~~------~~~~~v~iAIg~~~~R~~i~~~l~~~g~~~   98 (220)
T 4ea9_A           61 ---LALPMLRE------QGLSRLFVAIGDNRLRQKLGRKARDHGFSL   98 (220)
T ss_dssp             ---GGHHHHHH------TTCCEEEECCCCHHHHHHHHHHHHHTTCEE
T ss_pred             ---HHHHHhhc------ccccEEEEecCCHHHHHHHHHHHHhcCCCc
Confidence               33333332      235667889999999999999999988644

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=95.51  E-value=0.11  Score=44.00  Aligned_cols=80  Identities=20%  Similarity=0.280  Sum_probs=53.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.    +..+.++  .+..
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~----~~~~~~~--~~~~   59 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTN------------------SDLVSLA----KECPGIE--PVCV   59 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHH----HHSTTCE--EEEC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHH----HhccCCC--cEEe
Confidence            56789999987 8999999999999996 577777432                  1222111    1223444  3466


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++    .+.+.|+||.+..
T Consensus        60 D~~~~~~~~~~~~----~~~~id~vi~~Ag   85 (244)
T 1cyd_A           60 DLGDWDATEKALG----GIGPVDLLVNNAA   85 (244)
T ss_dssp             CTTCHHHHHHHHT----TCCCCSEEEECCC
T ss_pred             cCCCHHHHHHHHH----HcCCCCEEEECCc
Confidence            7777677777664    2356899998764

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.50  E-value=0.03  Score=48.91  Aligned_cols=84  Identities=21%  Similarity=0.264  Sum_probs=53.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+    +.  +..+.
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~----~~--~~~~~   60 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDE------------------SGGRALEQEL----PG--AVFIL   60 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHC----TT--EEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh----cC--CeEEE
Confidence            467788999975 7999999999999996 577776432                  1222222222    22  45666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+...++.....+.+.|++|.+.
T Consensus        61 ~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA   90 (270)
T 1yde_A           61 CDVTQEDDVKTLVSETIRRFGRLDCVVNNA   90 (270)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            777766666655432222235789888765

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.50  E-value=0.029  Score=49.68  Aligned_cols=85  Identities=13%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ||++|.++|-|. +|+|.++|+.|++.|. ++.+.|.+.                     +.+.+.+.++..  +...+.
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~---------------------~~l~~~~~~~g~--~~~~~~   81 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRK---------------------DVLDAAIAEIGG--GAVGIQ   81 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH---------------------HHHHHHHHHHCT--TCEEEE
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCH---------------------HHHHHHHHHcCC--CeEEEE
Confidence            588888888875 5899999999999997 588877432                     223333444543  344566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+..+.+++.....+.+.|++|+..
T Consensus        82 ~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA  111 (273)
T 4fgs_A           82 ADSANLAELDRLYEKVKAEAGRIDVLFVNA  111 (273)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            778777777766554444457899998765

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.50  E-value=0.036  Score=49.63  Aligned_cols=119  Identities=17%  Similarity=0.133  Sum_probs=65.4

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +-.+|.|||+|.+|+.++..|++.|. +++++|.+.-....+..       .|..-+.-..+.+..  .++-+...+   
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~-------~g~~~~~~~~~~~~~--aDvvi~~vp---   86 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVE-------HGASVCESPAEVIKK--CKYTIAMLS---   86 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHH-------TTCEECSSHHHHHHH--CSEEEECCS---
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH-------CCCeEcCCHHHHHHh--CCEEEEEcC---
Confidence            34689999999999999999999996 78888876432211111       011111111122211  233333322   


Q ss_pred             cchhhHHHHH---hcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCcc
Q psy2302          96 TLLRKVGALA---VQGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVS  148 (292)
Q Consensus        96 ~~~~~~~~~i---~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~  148 (292)
                       +...+.+.+   ........+-.+||+++. .+.....+.+...+.++.++++.+.
T Consensus        87 -~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~  142 (310)
T 3doj_A           87 -DPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS  142 (310)
T ss_dssp             -SHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             -CHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCC
Confidence             112333433   111112244567777765 4555566777777788877765544

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.49  E-value=0.02  Score=49.55  Aligned_cols=89  Identities=11%  Similarity=0.175  Sum_probs=57.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +..++|+|.|+ ||+|.++++.|++.|. ++.+++...                 ..+.+.+++.+.+..  .++..+..
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~   64 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSD-----------------TTAMETMKETYKDVE--ERLQFVQA   64 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSC-----------------HHHHHHHHHHTGGGG--GGEEEEEC
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCC-----------------hHHHHHHHHHHHhcC--CceEEEEe
Confidence            34567888876 7899999999999997 566665321                 123444444444433  35667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.++.....+.+.|+||.+..
T Consensus        65 Dl~~~~~v~~~~~~~~~~~g~id~lv~~Ag   94 (264)
T 3i4f_A           65 DVTKKEDLHKIVEEAMSHFGKIDFLINNAG   94 (264)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            888767766555432222357899998765

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=95.49  E-value=0.11  Score=44.00  Aligned_cols=80  Identities=18%  Similarity=0.297  Sum_probs=53.1

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.    .+.++  .+..
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~----~~~~~--~~~~   59 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQ------------------ADLDSLVRE----CPGIE--PVCV   59 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHH----STTCE--EEEC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHH----cCCCC--EEEE
Confidence            56788999987 8999999999999996 577776432                  122222221    22333  3466


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++    .+.+.|+||.+..
T Consensus        60 D~~~~~~~~~~~~----~~~~id~vi~~Ag   85 (244)
T 3d3w_A           60 DLGDWEATERALG----SVGPVDLLVNNAA   85 (244)
T ss_dssp             CTTCHHHHHHHHT----TCCCCCEEEECCC
T ss_pred             eCCCHHHHHHHHH----HcCCCCEEEECCc
Confidence            7777667776664    2357899998763

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.47  E-value=0.029  Score=48.87  Aligned_cols=88  Identities=14%  Similarity=0.108  Sum_probs=56.3

Q ss_pred             hcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +.++|+|.| .||+|.++++.|++.|.. +.+.+...                 ..+.+.+.+.+.+..  .++..+..+
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~D   84 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAAN-----------------REAADAVVAAITESG--GEAVAIPGD   84 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSC-----------------HHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCC-----------------hhHHHHHHHHHHhcC--CcEEEEEcC
Confidence            345566665 589999999999999975 44433211                 124555556665554  466777778


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+..+++.....+.+.|+||.+..
T Consensus        85 l~~~~~v~~~~~~~~~~~g~id~li~nAg  113 (272)
T 4e3z_A           85 VGNAADIAAMFSAVDRQFGRLDGLVNNAG  113 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            88766666555432222357899998753

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=95.45  E-value=0.046  Score=49.74  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=23.8

Q ss_pred             CcEEEEcCChHHHH-HHHHHHHh-CCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSV-TAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~-va~~La~~-Gvg~i~lvD~D   50 (292)
                      .||.|||+|.+|.. .+..|... ++.-..+.|.+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~   42 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSD   42 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence            58999999999996 77777765 44333456654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.45  E-value=0.1  Score=46.90  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|.|+|++|...++.+..+|...++.+|..
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~  194 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIS  194 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEech
Confidence            46789999999999999999999999999998853

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.45  E-value=0.03  Score=48.15  Aligned_cols=89  Identities=13%  Similarity=0.148  Sum_probs=55.7

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.| .|++|.++++.|++.|. ++.++|.+.-                  +.....+.+.+.. ..++..+..
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~l~~~~-~~~~~~~~~   71 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAA------------------DAVEVTEKVGKEF-GVKTKAYQC   71 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCT------------------THHHHHHHHHHHH-TCCEEEEEC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcch------------------hhHHHHHHHHHhc-CCeeEEEEe
Confidence            5677899996 57999999999999996 6777774320                  1111223333221 234666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        72 Dl~~~~~~~~~~~~~~~~~~~id~li~~Ag  101 (265)
T 1h5q_A           72 DVSNTDIVTKTIQQIDADLGPISGLIANAG  101 (265)
T ss_dssp             CTTCHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred             eCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            787766666554432222357899888753

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.44  E-value=0.026  Score=51.09  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      ..||+|+|+|.+|..++..|+..|. +++.|+|-|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999885 689999965

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.44  E-value=0.04  Score=47.58  Aligned_cols=81  Identities=17%  Similarity=0.249  Sum_probs=51.6

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+ +.+.+.+.      + ..+..
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~-~~~~~~~~------~-~~~~~   56 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRP------------------EG-KEVAEAIG------G-AFFQV   56 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESST------------------TH-HHHHHHHT------C-EEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCh------------------hH-HHHHHHhh------C-CEEEe
Confidence            56788999975 7999999999999996 677776432                  12 22223332      2 45566


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+...++.....+.+.|+||.+.
T Consensus        57 D~~~~~~~~~~~~~~~~~~g~iD~lv~~A   85 (256)
T 2d1y_A           57 DLEDERERVRFVEEAAYALGRVDVLVNNA   85 (256)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            77765666554432211235789988775

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=95.44  E-value=0.062  Score=48.93  Aligned_cols=92  Identities=11%  Similarity=-0.028  Sum_probs=53.2

Q ss_pred             HHhcCcEEEEcCChHHH-HHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          14 HIRTLTVIVVGVGGVGS-VTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs-~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .++..||.|||+|.+|. ..+..|... |+.-..+.|.+.                  .|++.++++.     .+..  +
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~------------------~~~~~~a~~~-----g~~~--~   78 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRW------------------DRAKRFTERF-----GGEP--V   78 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSH------------------HHHHHHHHHH-----CSEE--E
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCH------------------HHHHHHHHHc-----CCCC--c
Confidence            44567899999999998 789999887 444444667543                  2444444332     2221  1


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                             .+++++++.     .++|+|+.|+.+..- ..+...|.+.|++++
T Consensus        79 -------~~~~~ll~~-----~~~D~V~i~tp~~~h-~~~~~~al~aGk~Vl  117 (350)
T 3rc1_A           79 -------EGYPALLER-----DDVDAVYVPLPAVLH-AEWIDRALRAGKHVL  117 (350)
T ss_dssp             -------ESHHHHHTC-----TTCSEEEECCCGGGH-HHHHHHHHHTTCEEE
T ss_pred             -------CCHHHHhcC-----CCCCEEEECCCcHHH-HHHHHHHHHCCCcEE
Confidence                   244455532     468888888866432 223334455565443

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.44  E-value=0.034  Score=48.45  Aligned_cols=89  Identities=13%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|++.|.. +.++|...-                 .+.+...+.+....  .++..+.
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~-----------------~~~~~~~~~~~~~~--~~~~~~~   81 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMA-VAVSHSERN-----------------DHVSTWLMHERDAG--RDFKAYA   81 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEECSCH-----------------HHHHHHHHHHHTTT--CCCEEEE
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCch-----------------HHHHHHHHHHHhcC--CceEEEE
Confidence            355666777775 79999999999999974 666663211                 12333333444333  4556667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+.+.++.....+.+.|++|.+.
T Consensus        82 ~Dl~~~~~v~~~~~~~~~~~g~id~li~nA  111 (269)
T 3gk3_A           82 VDVADFESCERCAEKVLADFGKVDVLINNA  111 (269)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            777776666655433222235789998775

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.42  E-value=0.11  Score=48.27  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~  247 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPS  247 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            5689999999999999999999999899988753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.41  E-value=0.032  Score=50.86  Aligned_cols=78  Identities=23%  Similarity=0.264  Sum_probs=52.5

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC---CCeE
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP---DVTI   88 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np---~v~v   88 (292)
                      ......||.|+|+|.+|+.++..|+..|. .++.|+|-+                  ..|++..+.-|+...+   ...+
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~------------------~~~~~g~a~DL~~~~~~~~~~~i   76 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI------------------EDKLKGEMMDLQHGSLFLKTPKI   76 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC------------------HHHHHHHHHHHHHTGGGCSCCEE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC------------------hHHHHHHHHhhhhhhhccCCCeE
Confidence            45567899999999999999999999986 589998853                  2466666666665432   2222


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ...       .++++        +.++|+||.+..
T Consensus        77 ~~~-------~d~~~--------~~~aDiVvi~aG   96 (331)
T 4aj2_A           77 VSS-------KDYSV--------TANSKLVIITAG   96 (331)
T ss_dssp             EEC-------SSGGG--------GTTEEEEEECCS
T ss_pred             EEc-------CCHHH--------hCCCCEEEEccC
Confidence            211       12222        278999988764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.39  E-value=0.2  Score=43.75  Aligned_cols=98  Identities=15%  Similarity=0.057  Sum_probs=61.2

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.|+ |.+|+.+++.|...|--++.+++.+.-                +.++    +.+..  +.+  +....++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~----------------~~~~----~~l~~--~~~--~~~~~D~   60 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR----------------KKAA----KELRL--QGA--EVVQGDQ   60 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT----------------SHHH----HHHHH--TTC--EEEECCT
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC----------------CHHH----HHHHH--CCC--EEEEecC
Confidence            468999998 999999999999988446777664321                1111    12222  233  3455667


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCH---------HHHHHHHHHHHHhCCc-eeec
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF---------EARMTINMACNQLGQT-WFES  145 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~---------~~r~~in~~~~~~~~p-~i~~  145 (292)
                      ++.+.+...+       .++|.||.+....         .....+-++|.+.++. +++.
T Consensus        61 ~d~~~l~~~~-------~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~  113 (299)
T 2wm3_A           61 DDQVIMELAL-------NGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYS  113 (299)
T ss_dssp             TCHHHHHHHH-------TTCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred             CCHHHHHHHH-------hcCCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            6666676665       6799999887531         1223455667777764 4443

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.39  E-value=0.043  Score=50.12  Aligned_cols=31  Identities=19%  Similarity=0.423  Sum_probs=27.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ||.|||+|.+|+.++..|++.|. +++++|.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            89999999999999999999885 67887754

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.39  E-value=0.12  Score=45.98  Aligned_cols=95  Identities=17%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      .+|+|.|+ |.+|+.+++.|...| .+++++|.+.-...+                      +..  +  .++.+..+++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~----------------------l~~--~--~~~~~~~Dl~   66 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQR----------------------LAY--L--EPECRVAEML   66 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGGG----------------------GGG--G--CCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhhh----------------------hcc--C--CeEEEEecCC
Confidence            47999995 999999999999998 478887754311110                      000  1  2345566676


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCH---------------HHHHHHHHHHHHhCC-ceeecC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNF---------------EARMTINMACNQLGQ-TWFESG  146 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~---------------~~r~~in~~~~~~~~-p~i~~~  146 (292)
                      +.+.+.+.+       .++|+||.+....               .....+-++|.+.++ .+|+.+
T Consensus        67 d~~~~~~~~-------~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~S  125 (342)
T 2x4g_A           67 DHAGLERAL-------RGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVG  125 (342)
T ss_dssp             CHHHHHHHT-------TTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEEC
T ss_pred             CHHHHHHHH-------cCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEC
Confidence            656666654       5799999876421               112356667777775 455543

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=95.39  E-value=0.089  Score=45.25  Aligned_cols=82  Identities=12%  Similarity=0.240  Sum_probs=56.4

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.| .||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+   ..  ++..+..+++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~---~~--~~~~~~~Dv~   56 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQ------------------ERLQELKDEL---GD--NLYIAQLDVR   56 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHH---CT--TEEEEECCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh---cC--ceEEEEcCCC
Confidence            3567776 47999999999999995 577776432                  1333333333   22  4667778888


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+...++.....+.+.|++|.+..
T Consensus        57 ~~~~v~~~~~~~~~~~g~iD~lvnnAg   83 (248)
T 3asu_A           57 NRAAIEEMLASLPAEWCNIDILVNNAG   83 (248)
T ss_dssp             CHHHHHHHHHTSCTTTCCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            878888777765555678999998653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.38  E-value=0.046  Score=51.81  Aligned_cols=33  Identities=36%  Similarity=0.574  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .||.|||+|.+|..+|..|++.|. +++++|.+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCH
Confidence            589999999999999999999996 788999765

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.38  E-value=0.025  Score=49.90  Aligned_cols=32  Identities=31%  Similarity=0.524  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            79999999999999999999996 688888653

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.38  E-value=0.061  Score=46.64  Aligned_cols=92  Identities=22%  Similarity=0.220  Sum_probs=61.3

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .++|+|.| .|++|+++++.|++.|. ++.++|.+.....                             ...++.+..++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~-----------------------------~~~~~~~~~Dl   52 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA-----------------------------GPNEECVQCDL   52 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC-----------------------------CTTEEEEECCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc-----------------------------CCCCEEEEcCC
Confidence            46799998 68999999999999985 6777775431110                             12456677777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC-----CHH--------HHHHHHHHHHHhCC-ceeec
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD-----NFE--------ARMTINMACNQLGQ-TWFES  145 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d-----~~~--------~r~~in~~~~~~~~-p~i~~  145 (292)
                      ++.+.+...+       .++|+||.+..     ++.        .-..+.++|.+.+. .+|+.
T Consensus        53 ~d~~~~~~~~-------~~~D~vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~  109 (267)
T 3rft_A           53 ADANAVNAMV-------AGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFA  109 (267)
T ss_dssp             TCHHHHHHHH-------TTCSEEEECCSCCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCHHHHHHHH-------cCCCEEEECCCCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            7767777766       57899998752     221        12356667777765 44443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.37  E-value=0.061  Score=49.23  Aligned_cols=87  Identities=23%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             cCcEEEEcCChHHHH-HHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGVGGVGSV-TAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~GglGs~-va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..||.|||+|.+|.. .+..|... ++.-..+.|.+.                  .|       +.+..+.+++.     
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~------------------~~-------~~~~~~~~~~~-----   56 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDE------------------EK-------VKRDLPDVTVI-----   56 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCH------------------HH-------HHHHCTTSEEE-----
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCH------------------HH-------HHhhCCCCcEE-----
Confidence            358999999999996 77777665 443334556443                  12       12334444432     


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                          .+++++++.     .++|+|+.|+.+.. ...+...|.+.|++++
T Consensus        57 ----~~~~~ll~~-----~~~D~V~i~tp~~~-H~~~~~~al~aGk~Vl   95 (364)
T 3e82_A           57 ----ASPEAAVQH-----PDVDLVVIASPNAT-HAPLARLALNAGKHVV   95 (364)
T ss_dssp             ----SCHHHHHTC-----TTCSEEEECSCGGG-HHHHHHHHHHTTCEEE
T ss_pred             ----CCHHHHhcC-----CCCCEEEEeCChHH-HHHHHHHHHHCCCcEE
Confidence                355566532     47899998886633 2233344555666544

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.37  E-value=0.024  Score=49.13  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI---GKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv---g~i~lvD~D~   51 (292)
                      ..||.|||+|.+|+.++..|++.|.   .+++++|.+.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK   41 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence            4589999999999999999999995   5799988653

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=95.37  E-value=0.067  Score=46.15  Aligned_cols=86  Identities=13%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChH--HHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSK--VEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~K--a~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++|+|.| .||+|.++++.|++.|. ++.++|.+.                  .+  .+.+.+.+.+..  .++..+..
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~   60 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQ------------------QEEQAAETIKLIEAAD--QKAVFVGL   60 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGG------------------GHHHHHHHHHHHHTTT--CCEEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc------------------chHHHHHHHHHHHhcC--CcEEEEEc
Confidence            46788886 57999999999999996 477776432                  12  344445555433  35667777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|++|.+..
T Consensus        61 Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg   90 (258)
T 3a28_C           61 DVTDKANFDSAIDEAAEKLGGFDVLVNNAG   90 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            887766666554322222357899998753

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.37  E-value=0.015  Score=48.22  Aligned_cols=32  Identities=31%  Similarity=0.550  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..|+|||+|..|..+|..|++.|+ +++|+|-.
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~   34 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS   34 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            469999999999999999999998 58999853

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.34  E-value=0.071  Score=48.45  Aligned_cols=89  Identities=17%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRC--GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~--Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..||.|||+|.+|...+..|.+.  ++.-+.+.|.+.                  .|++.++++.     .+  ..+   
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~------------------~~~~~~~~~~-----~~--~~~---   64 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDP------------------AALKAAVERT-----GA--RGH---   64 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSH------------------HHHHHHHHHH-----CC--EEE---
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCH------------------HHHHHHHHHc-----CC--cee---
Confidence            45899999999999999999987  454455666543                  2444444332     12  222   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                          .+++++++.     .++|+|+.|+.+..- ..+...+.+.|++++
T Consensus        65 ----~~~~~ll~~-----~~~D~V~i~tp~~~h-~~~~~~al~~gk~v~  103 (354)
T 3q2i_A           65 ----ASLTDMLAQ-----TDADIVILTTPSGLH-PTQSIECSEAGFHVM  103 (354)
T ss_dssp             ----SCHHHHHHH-----CCCSEEEECSCGGGH-HHHHHHHHHTTCEEE
T ss_pred             ----CCHHHHhcC-----CCCCEEEECCCcHHH-HHHHHHHHHCCCCEE
Confidence                344455532     478999988866432 222334445555443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.34  E-value=0.086  Score=47.62  Aligned_cols=88  Identities=11%  Similarity=0.099  Sum_probs=53.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      .||.|||+|.+|...+..|.+. ++.-..+.|.+.                  .|++.+++    ... ++  .+     
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~------------------~~~~~~a~----~~g-~~--~~-----   54 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFI------------------EGAQRLAE----ANG-AE--AV-----   54 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSH------------------HHHHHHHH----TTT-CE--EE-----
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCH------------------HHHHHHHH----HcC-Cc--ee-----
Confidence            4899999999999999999986 433333555432                  23333322    222 22  22     


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                        .+++++++.     .++|+|+.|+.+..-. .+...|.+.|++++
T Consensus        55 --~~~~~~l~~-----~~~D~V~i~tp~~~h~-~~~~~al~~gk~v~   93 (344)
T 3euw_A           55 --ASPDEVFAR-----DDIDGIVIGSPTSTHV-DLITRAVERGIPAL   93 (344)
T ss_dssp             --SSHHHHTTC-----SCCCEEEECSCGGGHH-HHHHHHHHTTCCEE
T ss_pred             --CCHHHHhcC-----CCCCEEEEeCCchhhH-HHHHHHHHcCCcEE
Confidence              345555532     4789999998765433 33445667777654

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=95.34  E-value=0.053  Score=46.03  Aligned_cols=85  Identities=16%  Similarity=0.207  Sum_probs=55.2

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEE-eCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILF-DYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lv-D~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++|+|.| .|++|.++++.|++.|.. +.++ +.+.                  .+.+.+++.+.+..+  ++..+..++
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~~-v~~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~D~   60 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSA------------------KAAEEVSKQIEAYGG--QAITFGGDV   60 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCH------------------HHHHHHHHHHHHHTC--EEEEEECCT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCH------------------HHHHHHHHHHHhcCC--cEEEEeCCC
Confidence            5677776 579999999999999964 4442 3221                  244455555655543  566777788


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+...++.....+.+.|+||.+..
T Consensus        61 ~~~~~~~~~~~~~~~~~g~id~li~~Ag   88 (244)
T 1edo_A           61 SKEADVEAMMKTAIDAWGTIDVVVNNAG   88 (244)
T ss_dssp             TSHHHHHHHHHHHHHHSSCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7766666655432222357899998753

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.33  E-value=0.087  Score=47.26  Aligned_cols=32  Identities=34%  Similarity=0.534  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      ||+|+|+|.+|+.++..|+..+. .+++++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            79999999999999999999764 469999865

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=95.32  E-value=0.038  Score=47.21  Aligned_cols=85  Identities=19%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             cCcEEEEcCChHHHHHHHH--HHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGVGGVGSVTAEM--LTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~--La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..+|+|+|+|.+|..++..  +...|+.-+.++|.|.-.             +|+            .-..+.+..    
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k-------------~g~------------~i~gv~V~~----  135 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESK-------------IGT------------EVGGVPVYN----  135 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTT-------------TTC------------EETTEEEEE----
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHH-------------HHh------------HhcCCeeec----
Confidence            4689999999999999995  345678888899976521             111            001233322    


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT  141 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p  141 (292)
                         .+++.+++.       +.|+|+.|+.+.... .+.+.|.+.|+.
T Consensus       136 ---~~dl~eli~-------~~D~ViIAvPs~~~~-ei~~~l~~aGi~  171 (215)
T 2vt3_A          136 ---LDDLEQHVK-------DESVAILTVPAVAAQ-SITDRLVALGIK  171 (215)
T ss_dssp             ---GGGHHHHCS-------SCCEEEECSCHHHHH-HHHHHHHHTTCC
T ss_pred             ---hhhHHHHHH-------hCCEEEEecCchhHH-HHHHHHHHcCCC
Confidence               145666652       339999999876544 566677777765

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.31  E-value=0.11  Score=46.68  Aligned_cols=37  Identities=30%  Similarity=0.381  Sum_probs=28.4

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+++++|+|.|+ |.+|+.+++.|...|..+++++|..
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            456789999998 9999999999999996678887754

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.30  E-value=0.021  Score=51.26  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD   48 (292)
                      |++.|+     .++.++|+|||.|. +|..+|..|.+.| .++++++
T Consensus       156 l~~~~i-----~l~gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~h  196 (301)
T 1a4i_A          156 IKETGV-----PIAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCH  196 (301)
T ss_dssp             HHTTTC-----CCTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEEC
T ss_pred             HHHcCC-----CCCCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEE
Confidence            445555     68999999999996 7999999999998 5688876

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.29  E-value=0.011  Score=53.66  Aligned_cols=34  Identities=32%  Similarity=0.533  Sum_probs=29.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...||.|||+|.+|+.++..|+++|. +++++|.+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~   46 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWARR   46 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            35789999999999999999999985 68887754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.29  E-value=0.058  Score=50.73  Aligned_cols=32  Identities=31%  Similarity=0.459  Sum_probs=28.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            79999999999999999999996 688888754

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.29  E-value=0.025  Score=48.97  Aligned_cols=85  Identities=20%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.|+ |++|.++++.|++.|. ++.++|.+.                  .+.+.+.+   ++..  ++..+..
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~---~~~~--~~~~~~~   65 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDV------------------MAAQAVVA---GLEN--GGFAVEV   65 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHH---TCTT--CCEEEEC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHH---HHhc--CCeEEEE
Confidence            56788999975 6899999999999996 677777432                  12222222   2222  3445566


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        66 D~~d~~~v~~~~~~~~~~~g~iD~lv~~Ag   95 (263)
T 3ak4_A           66 DVTKRASVDAAMQKAIDALGGFDLLCANAG   95 (263)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             eCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            676656655544321112247898887753

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.28  E-value=0.019  Score=51.18  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD   48 (292)
                      .|++++|+|+|.|+ +|..++..|.+.|. ++++.+
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~h  192 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCH  192 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence            68999999999998 79999999999997 578864

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.28  E-value=0.023  Score=48.21  Aligned_cols=84  Identities=18%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++++|+|.|+ |++|.++++.|+..|. .++.++|.+.-.                  .    +.+.++ +..++..+..
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~------------------~----~~l~~~-~~~~~~~~~~   58 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEK------------------A----TELKSI-KDSRVHVLPL   58 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGG------------------C----HHHHTC-CCTTEEEEEC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHH------------------H----HHHHhc-cCCceEEEEe
Confidence            4567888865 7999999999999985 578888864311                  0    112222 2345666777


Q ss_pred             cccchhhHHHHHhcCCCCCC--CcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEG--PVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~--~~DlVv~a~  122 (292)
                      ++++.+.+.+.++.....+.  +.|+||.+.
T Consensus        59 D~~~~~~~~~~~~~~~~~~g~~~id~li~~A   89 (250)
T 1yo6_A           59 TVTCDKSLDTFVSKVGEIVGSDGLSLLINNA   89 (250)
T ss_dssp             CTTCHHHHHHHHHHHHHHHGGGCCCEEEECC
T ss_pred             ecCCHHHHHHHHHHHHHhcCCCCCcEEEECC
Confidence            77765665555432111112  688888765

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.27  E-value=0.036  Score=48.31  Aligned_cols=87  Identities=20%  Similarity=0.257  Sum_probs=55.9

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.| .|++|.++++.|+..|. ++.++|.+.                  .+.+.+.+.+....  .++..+..
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~   90 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSH------------------PADEKAEHLQKTYG--VHSKAYKC   90 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSS------------------CCHHHHHHHHHHHC--SCEEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcceEEEe
Confidence            5678888886 56999999999999996 577777432                  11223334444443  34666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+...++.....+.+.|+||.+.
T Consensus        91 Dl~~~~~~~~~~~~~~~~~g~id~li~~A  119 (279)
T 3ctm_A           91 NISDPKSVEETISQQEKDFGTIDVFVANA  119 (279)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCSEEEECG
T ss_pred             ecCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            77776666655432211224689998765

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=95.26  E-value=0.076  Score=50.85  Aligned_cols=126  Identities=10%  Similarity=0.113  Sum_probs=67.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEeccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~~~i   95 (292)
                      ..+|.|||+|.+|..+|.+|++.|. +++++|.+.-....+...  ........-+.-..+.+..+ .+++-+...+.. 
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~-   79 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLAN--EAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAG-   79 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHT--TTTTSSCEECSSHHHHHHTBCSSCEEEECSCSS-
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc--ccCCCceeccCCHHHHHhhccCCCEEEEecCCh-
Confidence            4689999999999999999999996 688888654221111110  00000000001112222221 234433333221 


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCH-HHHHHHHHHHHHhCCceeecCccc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF-EARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~-~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                         ...++.++.....+.+-++|||++-.. .....+.+.+.+.++.++.+++++
T Consensus        80 ---~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           80 ---QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             ---HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             ---HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence               122222222112235678999887654 344455567778899888877654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.25  E-value=0.15  Score=48.43  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=70.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      .++|+|+|.|.+|..+|+.|-..  .++++++.|.                  .|++.+++    ..|.+.  ....+-+
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~~--~~v~iIE~d~------------------~r~~~la~----~l~~~~--Vi~GD~t  288 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQT--YSVKLIERNL------------------QRAEKLSE----ELENTI--VFCGDAA  288 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCH------------------HHHHHHHH----HCTTSE--EEESCTT
T ss_pred             ccEEEEEcchHHHHHHHHHhhhc--CceEEEecCH------------------HHHHHHHH----HCCCce--EEecccc
Confidence            57899999999999999999653  5799998765                  24444444    445544  3445555


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      +.+-+.+    .  -+.++|++|.+|++.+.-..+.-+++++|++-+.+
T Consensus       289 d~~~L~e----e--~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          289 DQELLTE----E--NIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             CHHHHHH----T--TGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             chhhHhh----c--CchhhcEEEEcccCcHHHHHHHHHHHHcCCccccc
Confidence            5333332    1  13689999999999999999999999998876544

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.25  E-value=0.075  Score=46.36  Aligned_cols=31  Identities=35%  Similarity=0.379  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +|.|||+|.+|+.++..|.+.|. +++++|.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            79999999999999999999997 78888754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.24  E-value=0.038  Score=48.73  Aligned_cols=117  Identities=19%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +||.|||+|.+|+.++..|++.|. +++++|.+.-....+...       |-.-+.-..+.+..  .++-+...+    +
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~-------g~~~~~~~~~~~~~--advvi~~v~----~   67 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVAL-------GARQASSPAEVCAA--CDITIAMLA----D   67 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHH-------TCEECSCHHHHHHH--CSEEEECCS----S
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHC-------CCeecCCHHHHHHc--CCEEEEEcC----C
Confidence            479999999999999999999995 688888654221111110       10000011111111  233333222    1


Q ss_pred             hhhHHHHH---hcCCCCCCCcceEEeccCC-HHHHHHHHHHHHHhCCceeecCcc
Q psy2302          98 LRKVGALA---VQGSLTEGPVDLVLSCVDN-FEARMTINMACNQLGQTWFESGVS  148 (292)
Q Consensus        98 ~~~~~~~i---~~~~~~~~~~DlVv~a~d~-~~~r~~in~~~~~~~~p~i~~~~~  148 (292)
                      ...+.+.+   ......+.+-.+||+++.. +.....+.+...+.++.++.+.+.
T Consensus        68 ~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  122 (287)
T 3pdu_A           68 PAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVS  122 (287)
T ss_dssp             HHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             HHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCcc
Confidence            12344443   1111122345677776654 455566677777778777766443

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=95.24  E-value=0.1  Score=47.21  Aligned_cols=90  Identities=18%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             CcEEEEcCChHHHHHHHHHH-Hh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLT-RC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La-~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .||.|||+|.+|...+..|. +. ++.-..+.|.+.                  .|++.++++   ....+.  .+    
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~------------------~~~~~~~~~---~g~~~~--~~----   55 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQ------------------EAAQKVVEQ---YQLNAT--VY----   55 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSH------------------HHHHHHHHH---TTCCCE--EE----
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCH------------------HHHHHHHHH---hCCCCe--ee----
Confidence            48999999999999999998 43 443344555432                  233333332   221122  22    


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                         .+++++++.     .++|+|+.|+.+.. ...+...+.+.|++++
T Consensus        56 ---~~~~~ll~~-----~~~D~V~i~tp~~~-h~~~~~~al~~Gk~vl   94 (344)
T 3mz0_A           56 ---PNDDSLLAD-----ENVDAVLVTSWGPA-HESSVLKAIKAQKYVF   94 (344)
T ss_dssp             ---SSHHHHHHC-----TTCCEEEECSCGGG-HHHHHHHHHHTTCEEE
T ss_pred             ---CCHHHHhcC-----CCCCEEEECCCchh-HHHHHHHHHHCCCcEE
Confidence               345555542     46899999986543 2333345566666544

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.24  E-value=0.02  Score=51.03  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD   48 (292)
                      .|++++|+|+|.|+ +|..+|..|.+.|. ++++.+
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h  191 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCH  191 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence            67999999999998 79999999999997 588875

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.23  E-value=0.09  Score=49.78  Aligned_cols=96  Identities=18%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHH-H--------------
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL-Q--------------   80 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l-~--------------   80 (292)
                      .-||.|||+|.+|...+..+.+. |+.-..+.|.+                  ..|++.+++++ .              
T Consensus        23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~------------------~era~~~a~~~yG~~~~~~~~~~~~~i   84 (446)
T 3upl_A           23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARR------------------LPNTFKAIRTAYGDEENAREATTESAM   84 (446)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSS------------------THHHHHHHHHHHSSSTTEEECSSHHHH
T ss_pred             ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCC------------------HHHHHHHHHHhcCCccccccccchhhh
Confidence            46899999999999999887653 23333333332                  23444443322 1              


Q ss_pred             -h-h-CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceee
Q psy2302          81 -N-I-NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFE  144 (292)
Q Consensus        81 -~-~-np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~  144 (292)
                       + + .+.  +..+       .+++++++.     .+.|+|++++.++..-..+...|.+.|+.++.
T Consensus        85 ~~a~~~g~--~~v~-------~D~eeLL~d-----~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~  137 (446)
T 3upl_A           85 TRAIEAGK--IAVT-------DDNDLILSN-----PLIDVIIDATGIPEVGAETGIAAIRNGKHLVM  137 (446)
T ss_dssp             HHHHHTTC--EEEE-------SCHHHHHTC-----TTCCEEEECSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhhhccCC--ceEE-------CCHHHHhcC-----CCCCEEEEcCCChHHHHHHHHHHHHcCCcEEe
Confidence             0 0 011  1111       456666642     47999999998876555666677777776653

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.23  E-value=0.09  Score=50.09  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=29.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..+|.|||+|.+|+.++.+|++.|. +++++|.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            4689999999999999999999997 58887754

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.19  E-value=0.079  Score=45.37  Aligned_cols=32  Identities=31%  Similarity=0.483  Sum_probs=27.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ||.|||+|.+|..++..|...|+.-..+.|.+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            79999999999999999998887544788865

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=95.18  E-value=0.06  Score=49.06  Aligned_cols=26  Identities=19%  Similarity=0.367  Sum_probs=19.2

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHH
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTR   38 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~   38 (292)
                      ..++.-||.|||+|.+|..-+..+..
T Consensus        21 ~~MkkirvgiIG~G~ig~~H~~a~~~   46 (393)
T 4fb5_A           21 QSMKPLGIGLIGTGYMGKCHALAWNA   46 (393)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHTT
T ss_pred             cCCCCccEEEEcCCHHHHHHHHHHHh
Confidence            45677899999999999887776654

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.18  E-value=0.1  Score=47.69  Aligned_cols=93  Identities=14%  Similarity=0.132  Sum_probs=55.3

Q ss_pred             HHhcCcEEEEcCChHHH-HHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGGVGS-VTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs-~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      -++..||.|||+|..|. ..+..|...|+.-..+.|.+.                  .|++.++++    .+.+++  + 
T Consensus        23 Mm~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~------------------~~a~~~a~~----~~~~~~--~-   77 (361)
T 3u3x_A           23 MMDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDD------------------ALAAEFSAV----YADARR--I-   77 (361)
T ss_dssp             ---CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCH------------------HHHHHHHHH----SSSCCE--E-
T ss_pred             hccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCH------------------HHHHHHHHH----cCCCcc--c-
Confidence            34567999999999885 467777777776666777543                  244443332    332222  1 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                            .+++++++.     .++|+|+.|+.+. ....+...|.+.|++++
T Consensus        78 ------~~~~~ll~~-----~~vD~V~I~tp~~-~H~~~~~~al~aGkhVl  116 (361)
T 3u3x_A           78 ------ATAEEILED-----ENIGLIVSAAVSS-ERAELAIRAMQHGKDVL  116 (361)
T ss_dssp             ------SCHHHHHTC-----TTCCEEEECCCHH-HHHHHHHHHHHTTCEEE
T ss_pred             ------CCHHHHhcC-----CCCCEEEEeCChH-HHHHHHHHHHHCCCeEE
Confidence                  456666642     4689999888653 33444455666666543

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.17  E-value=0.087  Score=49.59  Aligned_cols=99  Identities=14%  Similarity=0.097  Sum_probs=56.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCCeEEEE
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v~v~~~   91 (292)
                      .++..||.|||+|.+|...+..|... |+.-..+.|.+                  ..|++.+++++.+.. |.+++  +
T Consensus        17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~------------------~~~~~~~a~~~~~~g~~~~~~--~   76 (444)
T 2ixa_A           17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPD------------------PYMVGRAQEILKKNGKKPAKV--F   76 (444)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSC------------------HHHHHHHHHHHHHTTCCCCEE--E
T ss_pred             CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCC------------------HHHHHHHHHHHHhcCCCCCce--e
Confidence            34556899999999999999888764 33333455533                  346666666665432 33332  2


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT  141 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p  141 (292)
                      ..   ..++++++++.     .+.|+|+.|+.+.. ...+...|.+.|++
T Consensus        77 ~~---~~~~~~~ll~~-----~~vD~V~i~tp~~~-h~~~~~~al~aGkh  117 (444)
T 2ixa_A           77 GN---GNDDYKNMLKD-----KNIDAVFVSSPWEW-HHEHGVAAMKAGKI  117 (444)
T ss_dssp             CS---STTTHHHHTTC-----TTCCEEEECCCGGG-HHHHHHHHHHTTCE
T ss_pred             cc---CCCCHHHHhcC-----CCCCEEEEcCCcHH-HHHHHHHHHHCCCe
Confidence            21   01356666632     36899999886532 22233334444443

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.16  E-value=0.064  Score=46.24  Aligned_cols=82  Identities=20%  Similarity=0.324  Sum_probs=51.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|...                     +   +...++  ..++..+.
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~---------------------~---~~~~~~--~~~~~~~~   58 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRG---------------------E---DVVADL--GDRARFAA   58 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSC---------------------H---HHHHHT--CTTEEEEE
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCch---------------------H---HHHHhc--CCceEEEE
Confidence            577889999976 7999999999999996 577776411                     0   111122  23456667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.... +.+.|++|.+..
T Consensus        59 ~D~~~~~~v~~~~~~~~~-~g~id~lv~nAg   88 (257)
T 3tl3_A           59 ADVTDEAAVASALDLAET-MGTLRIVVNCAG   88 (257)
T ss_dssp             CCTTCHHHHHHHHHHHHH-HSCEEEEEECGG
T ss_pred             CCCCCHHHHHHHHHHHHH-hCCCCEEEECCC
Confidence            777776666655432222 357899888764

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.14  E-value=0.03  Score=51.23  Aligned_cols=88  Identities=14%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|.+++|.|||+|.+|..+|+.|...|. ++..+|...-.            ..                 ..  ..   
T Consensus       168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~------------~~-----------------~~--~~---  212 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS------------GV-----------------DW--IA---  212 (340)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT------------TS-----------------CC--EE---
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc------------cc-----------------Cc--ee---
Confidence            6789999999999999999999998887 57776643210            00                 00  00   


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHH---HhCCceeecCc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACN---QLGQTWFESGV  147 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~---~~~~p~i~~~~  147 (292)
                       .   .++++++       ..+|+|+.++. +..++..+++...   +.+..+|+.+-
T Consensus       213 -~---~sl~ell-------~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aR  259 (340)
T 4dgs_A          213 -H---QSPVDLA-------RDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVAR  259 (340)
T ss_dssp             -C---SSHHHHH-------HTCSEEEECC----------CHHHHHHTTTTCEEEECSC
T ss_pred             -c---CCHHHHH-------hcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCC
Confidence             0   2344555       57999999876 5667777754333   23455666643

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=95.14  E-value=0.096  Score=47.78  Aligned_cols=94  Identities=19%  Similarity=0.194  Sum_probs=54.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHH-H-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLT-R-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La-~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .++..||.|||+|.+|...+..|. + .|+.-..++|.+.                  .|++.++++.   ...++  .+
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~------------------~~~~~~a~~~---g~~~~--~~   76 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVA------------------GRAQAALDKY---AIEAK--DY   76 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSST------------------THHHHHHHHH---TCCCE--EE
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCH------------------HHHHHHHHHh---CCCCe--ee
Confidence            445568999999999999999998 4 3444444656432                  3555444433   21122  22


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                             .+++++++.     .++|+|+.|+.+.. ...+...|.+.|++++
T Consensus        77 -------~~~~~ll~~-----~~~D~V~i~tp~~~-h~~~~~~al~aGk~Vl  115 (357)
T 3ec7_A           77 -------NDYHDLIND-----KDVEVVIITASNEA-HADVAVAALNANKYVF  115 (357)
T ss_dssp             -------SSHHHHHHC-----TTCCEEEECSCGGG-HHHHHHHHHHTTCEEE
T ss_pred             -------CCHHHHhcC-----CCCCEEEEcCCcHH-HHHHHHHHHHCCCCEE
Confidence                   345555542     46899999886643 2333445555665443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.12  E-value=0.014  Score=51.76  Aligned_cols=33  Identities=18%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++|+|+|+||.|..++..|+..| .++++++.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence            789999999999999999999999 999997643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.12  E-value=0.06  Score=48.86  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|+|+|++|...++.+...|.++++.+|.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~  200 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSR  200 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            36789999999999999999999999889988854

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.11  E-value=0.22  Score=44.19  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            4689999999999999999999996 688888654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.10  E-value=0.046  Score=50.17  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ...+|+|+|+|++|...++.+...|..+++.+|.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~  226 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDI  226 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3678999999999999999999999989998874

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.10  E-value=0.097  Score=49.97  Aligned_cols=32  Identities=13%  Similarity=0.264  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+|.|||+|.+|+.++.+|++.|. +++++|.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~   34 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRT   34 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            579999999999999999999997 58888864

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.09  E-value=0.03  Score=48.70  Aligned_cols=94  Identities=17%  Similarity=0.177  Sum_probs=59.1

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHh--CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRC--GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~--Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ++|+|.|+ |.+|+.+++.|...  |. +++++|.+.-                  |..    .+..  +.+  +.+..+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~------------------~~~----~l~~--~~~--~~~~~D   53 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVE------------------KAS----TLAD--QGV--EVRHGD   53 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTT------------------TTH----HHHH--TTC--EEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHH------------------HHh----HHhh--cCC--eEEEec
Confidence            47999997 99999999999998  74 5777664320                  111    1111  233  345566


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC-------CHHHHHHHHHHHHHhCC-ceeec
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD-------NFEARMTINMACNQLGQ-TWFES  145 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d-------~~~~r~~in~~~~~~~~-p~i~~  145 (292)
                      +++.+.+.+.+       .++|+||.+..       |......+-++|.+.++ .+++.
T Consensus        54 ~~d~~~l~~~~-------~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~  105 (287)
T 2jl1_A           54 YNQPESLQKAF-------AGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYT  105 (287)
T ss_dssp             TTCHHHHHHHT-------TTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cCCHHHHHHHH-------hcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            66656666654       57899987764       23333556677777776 45443

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.09  E-value=0.1  Score=47.13  Aligned_cols=114  Identities=16%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHH--hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTR--CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~--~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .++.++|+|.|+ |.+|++++..|+.  .|. +++++|...-.. +...  -..+.++..         ... +...++.
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~~~-~~~~--~~~~~~~~~---------~~~-~~~~~~~   72 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNT-LFSN--NRPSSLGHF---------KNL-IGFKGEV   72 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCCC----------CCCCCCG---------GGG-TTCCSEE
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCccc-cccc--cchhhhhhh---------hhc-cccCceE
Confidence            356789999965 9999999999999  675 577777532100 0000  000111111         011 1223456


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccCC-------H--------HHHHHHHHHHHHhCCceeecCc
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN-------F--------EARMTINMACNQLGQTWFESGV  147 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-------~--------~~r~~in~~~~~~~~p~i~~~~  147 (292)
                      +..++++.+.+...      ...++|+||.+...       +        .....+-++|.+.+..+|+.+.
T Consensus        73 ~~~Dl~d~~~~~~~------~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS  138 (362)
T 3sxp_A           73 IAADINNPLDLRRL------EKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASS  138 (362)
T ss_dssp             EECCTTCHHHHHHH------TTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EECCCCCHHHHHHh------hccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCc
Confidence            66777776666654      12689999987641       1        1123566778888877776543

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.06  E-value=0.15  Score=46.48  Aligned_cols=74  Identities=22%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +.++|+|.|+ |.+|+.+++.|...|. +++++|.+.-..   . ..                    ..+.  ++.+..+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---~-~~--------------------~~~~--v~~~~~D   80 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEH---M-TE--------------------DMFC--DEFHLVD   80 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSS---S-CG--------------------GGTC--SEEEECC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCccc---h-hh--------------------ccCC--ceEEECC
Confidence            3468999998 9999999999999994 688777543110   0 00                    0122  3445566


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+.+.+       .++|+||.+..
T Consensus        81 l~d~~~~~~~~-------~~~d~Vih~A~  102 (379)
T 2c5a_A           81 LRVMENCLKVT-------EGVDHVFNLAA  102 (379)
T ss_dssp             TTSHHHHHHHH-------TTCSEEEECCC
T ss_pred             CCCHHHHHHHh-------CCCCEEEECce
Confidence            76666666665       57999998754

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=95.06  E-value=0.051  Score=42.34  Aligned_cols=91  Identities=19%  Similarity=0.212  Sum_probs=57.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +.++|+|+|+|+.|..++..|.+. |..-+.++|.|.-.   ..+.                     + ..+.+-  .  
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~---~g~~---------------------i-~g~pV~--g--   53 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKK---HKTT---------------------M-QGITIY--R--   53 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGG---TTCE---------------------E-TTEEEE--C--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCccc---CCCE---------------------e-cCeEEE--C--
Confidence            356899999999999999999876 55566677765310   0110                     0 122322  1  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCC--HHHHHHHHHHHHHhCCcee
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN--FEARMTINMACNQLGQTWF  143 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~--~~~r~~in~~~~~~~~p~i  143 (292)
                      +   +++.+++..     ...|.|+.|..+  ...+..+-+.|.+.++.+.
T Consensus        54 ~---~~l~~~~~~-----~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~   96 (141)
T 3nkl_A           54 P---KYLERLIKK-----HCISTVLLAVPSASQVQKKVIIESLAKLHVEVL   96 (141)
T ss_dssp             G---GGHHHHHHH-----HTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred             H---HHHHHHHHH-----CCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            1   344444432     367888888764  3456677778888887653

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.05  E-value=0.056  Score=46.70  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=28.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+|.|||+|.+|..++..|.+.| .++.++|.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g-~~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTP-HELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-CeEEEECCC
Confidence            48999999999999999999988 478887754

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.04  E-value=0.14  Score=45.64  Aligned_cols=102  Identities=18%  Similarity=0.151  Sum_probs=60.5

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .++.++|+|.| .|.+|+.+++.|+..| .+++++|.+.-..   ... +                 .++ +  .++.+.
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~---~~~-l-----------------~~~-~--~~~~~~   72 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGR---REH-L-----------------KDH-P--NLTFVE   72 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCC---GGG-S-----------------CCC-T--TEEEEE
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccc---hhh-H-----------------hhc-C--CceEEE
Confidence            56678999998 5999999999999999 5788777542110   000 0                 000 1  344556


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCC--------------HHHHHHHHHHHHHhCC-ceeec
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDN--------------FEARMTINMACNQLGQ-TWFES  145 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~--------------~~~r~~in~~~~~~~~-p~i~~  145 (292)
                      .++++.+.+.+.++.     .++|+||.+...              ......+-++|.+.++ .+|+.
T Consensus        73 ~Dl~d~~~~~~~~~~-----~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~  135 (333)
T 2q1w_A           73 GSIADHALVNQLIGD-----LQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYF  135 (333)
T ss_dssp             CCTTCHHHHHHHHHH-----HCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EeCCCHHHHHHHHhc-----cCCcEEEECceecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            667665666666532     148999887532              1122456667777765 45543

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.04  E-value=0.047  Score=49.87  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             cCcEEEEcCChHHHH-HHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGVGGVGSV-TAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~GglGs~-va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..||.|||+|.+|.. .+..|... ++.-..+.|.+.                         +++.+..+.+++  +   
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~-------------------------~~~~~~~~~~~~--~---   54 (358)
T 3gdo_A            5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRT-------------------------EEVKRDFPDAEV--V---   54 (358)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCH-------------------------HHHHHHCTTSEE--E---
T ss_pred             cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCH-------------------------HHHHhhCCCCce--E---
Confidence            358999999999996 67777654 443334555442                         112233444432  2   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                          .+++++++.     .++|+|+.|+.+.. ...+...|.+.|++++
T Consensus        55 ----~~~~~ll~~-----~~vD~V~i~tp~~~-H~~~~~~al~aGkhVl   93 (358)
T 3gdo_A           55 ----HELEEITND-----PAIELVIVTTPSGL-HYEHTMACIQAGKHVV   93 (358)
T ss_dssp             ----SSTHHHHTC-----TTCCEEEECSCTTT-HHHHHHHHHHTTCEEE
T ss_pred             ----CCHHHHhcC-----CCCCEEEEcCCcHH-HHHHHHHHHHcCCeEE
Confidence                344555532     46889988886532 2333344555565443

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.02  E-value=0.041  Score=47.88  Aligned_cols=36  Identities=33%  Similarity=0.468  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   41 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIH   41 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            467788999975 7999999999999996 67777754

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.01  E-value=0.16  Score=48.16  Aligned_cols=43  Identities=19%  Similarity=0.417  Sum_probs=34.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR   59 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R   59 (292)
                      .+.||.|||+|.+|..+|..|++.|. +++++|-|.-....+++
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~kv~~l~~   49 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDARKIELLHQ   49 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHTT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHhc
Confidence            35689999999999999999999995 68888876544444444

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.01  E-value=0.083  Score=49.02  Aligned_cols=87  Identities=23%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhC---------CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCG---------IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~G---------vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      -||.|||+|.+|..-+..|.+.+         +.=..+.|.+                  ..|++.+++++    +..+ 
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~------------------~~~a~~~a~~~----~~~~-   83 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQD------------------QAMAERHAAKL----GAEK-   83 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSS------------------HHHHHHHHHHH----TCSE-
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCC------------------HHHHHHHHHHc----CCCe-
Confidence            58999999999999999988764         2222344432                  33555555443    2222 


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT  141 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p  141 (292)
                       .+       .+++++++.     .+.|+|+.|+.+. ....+...|.+.|++
T Consensus        84 -~y-------~d~~~ll~~-----~~vD~V~I~tp~~-~H~~~~~~al~aGkh  122 (412)
T 4gqa_A           84 -AY-------GDWRELVND-----PQVDVVDITSPNH-LHYTMAMAAIAAGKH  122 (412)
T ss_dssp             -EE-------SSHHHHHHC-----TTCCEEEECSCGG-GHHHHHHHHHHTTCE
T ss_pred             -EE-------CCHHHHhcC-----CCCCEEEECCCcH-HHHHHHHHHHHcCCC
Confidence             22       356666653     5789999998553 222333344444443

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.00  E-value=0.047  Score=47.96  Aligned_cols=85  Identities=11%  Similarity=0.147  Sum_probs=54.8

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++|+|.| .||+|.++++.|++.|. ++.++|.+.                  .+.+.+.   .+.  ..++..+..
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~---~~~--~~~~~~~~~   58 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSA------------------ERLRELE---VAH--GGNAVGVVG   58 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHH---HHT--BTTEEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCH------------------HHHHHHH---HHc--CCcEEEEEc
Confidence            5678888887 57999999999999996 677776432                  1222222   222  235666777


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+..+++.....+.+.|++|.+..
T Consensus        59 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg   88 (281)
T 3zv4_A           59 DVRSLQDQKRAAERCLAAFGKIDTLIPNAG   88 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            787766666554432222357899987753

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.97  E-value=0.084  Score=49.82  Aligned_cols=37  Identities=14%  Similarity=0.308  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      ...-.||.|||+|.+|..+|..|++ | -+++++|.+.-
T Consensus        33 ~~~~mkIaVIGlG~mG~~lA~~La~-G-~~V~~~D~~~~   69 (432)
T 3pid_A           33 GSEFMKITISGTGYVGLSNGVLIAQ-N-HEVVALDIVQA   69 (432)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHT-T-SEEEEECSCHH
T ss_pred             ccCCCEEEEECcCHHHHHHHHHHHc-C-CeEEEEecCHH
Confidence            4455689999999999999999998 7 47889987653

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.95  E-value=0.19  Score=44.62  Aligned_cols=102  Identities=21%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.| .|.+|+.+++.|+..|. +++++|...       |.          +.....+.+.. .+  +++.+..+++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------~~----------~~~~~~~~l~~-~~--~~~~~~~Dl~   60 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLS-------RK----------GATDNLHWLSS-LG--NFEFVHGDIR   60 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC-------ST----------THHHHHHHHHT-TC--CCEEEECCTT
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeCCC-------cc----------Cchhhhhhhcc-CC--ceEEEEcCCC
Confidence            4799998 59999999999999985 677776421       10          01111223332 12  3455566777


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCH---------H--------HHHHHHHHHHHhCCc--eeec
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNF---------E--------ARMTINMACNQLGQT--WFES  145 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~---------~--------~r~~in~~~~~~~~p--~i~~  145 (292)
                      +.+.+.+.++.     .++|+||.+....         .        ....+-++|.+.++.  +|+.
T Consensus        61 d~~~~~~~~~~-----~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~  123 (347)
T 1orr_A           61 NKNDVTRLITK-----YMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYS  123 (347)
T ss_dssp             CHHHHHHHHHH-----HCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CHHHHHHHHhc-----cCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe
Confidence            76677766632     1489999876421         1        113456677777754  5544

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.95  E-value=0.025  Score=52.54  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +..++|+|+|+|.+|..+++.|.+.|. +++++|...
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~  217 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRP  217 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSG
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            367899999999999999999999998 799988654

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=94.95  E-value=0.16  Score=45.08  Aligned_cols=81  Identities=19%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++++|+|.|+ |.+|+++++.|+..|- -+++++|...-. .+..+                   +.++...-.++.+..
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~~-------------------~~~~~~~~~~~~~~~   61 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYG-SNPAN-------------------LKDLEDDPRYTFVKG   61 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT-CCGGG-------------------GTTTTTCTTEEEEEC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCccc-CchhH-------------------HhhhccCCceEEEEc
Confidence            3568999985 9999999999999984 367777753210 01100                   001111223556667


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+.+.+       .++|+||.+..
T Consensus        62 Dl~d~~~~~~~~-------~~~d~vih~A~   84 (336)
T 2hun_A           62 DVADYELVKELV-------RKVDGVVHLAA   84 (336)
T ss_dssp             CTTCHHHHHHHH-------HTCSEEEECCC
T ss_pred             CCCCHHHHHHHh-------hCCCEEEECCC
Confidence            777666666665       57899998764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=94.94  E-value=0.079  Score=46.58  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      ..+|.|||+|.+|+.++..|++.|. -+++++|.+
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            4689999999999999999999974 367777754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.92  E-value=0.074  Score=51.54  Aligned_cols=88  Identities=17%  Similarity=0.274  Sum_probs=64.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ..+|+|+|+|.+|..+++.|...|.. ++++|.|.-....+.                              ..+..+.+
T Consensus       348 ~~~viIiG~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~------------------------------~~i~gD~t  396 (565)
T 4gx0_A          348 DELIFIIGHGRIGCAAAAFLDRKPVP-FILIDRQESPVCNDH------------------------------VVVYGDAT  396 (565)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCCSSCCSS------------------------------CEEESCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECChHHHhhcC------------------------------CEEEeCCC
Confidence            37999999999999999999999965 889998763221110                              23333334


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT  141 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p  141 (292)
                      +.+-+.+.      -..++|.+|.++++.+.-..+...+++.+..
T Consensus       397 ~~~~L~~a------gi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~  435 (565)
T 4gx0_A          397 VGQTLRQA------GIDRASGIIVTTNDDSTNIFLTLACRHLHSH  435 (565)
T ss_dssp             SSTHHHHH------TTTSCSEEEECCSCHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHhc------CccccCEEEEECCCchHHHHHHHHHHHHCCC
Confidence            43444332      1378999999999998888888899988764

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.91  E-value=0.044  Score=47.09  Aligned_cols=93  Identities=11%  Similarity=0.067  Sum_probs=54.5

Q ss_pred             HHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          11 NYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        11 ~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ....+++++|+|.|+ ||+|.++++.|++.|.. +.++|...-                 .+.+...+.+++..  .++.
T Consensus         7 ~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~-v~~~~~~~~-----------------~~~~~~~~~~~~~~--~~~~   66 (256)
T 3ezl_A            7 HHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFR-VVAGCGPNS-----------------PRRVKWLEDQKALG--FDFY   66 (256)
T ss_dssp             ------CEEEEETTTTSHHHHHHHHHHHHTTEE-EEEEECTTC-----------------SSHHHHHHHHHHTT--CCCE
T ss_pred             CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCH-----------------HHHHHHHHHHHhcC--CeeE
Confidence            345678888888864 69999999999999964 555552110                 12223334444443  3455


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..++++.+.+...++.....+.+.|++|.+..
T Consensus        67 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~~Ag  100 (256)
T 3ezl_A           67 ASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAG  100 (256)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             EEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            6667777666666555432223457899988753

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.91  E-value=0.044  Score=47.68  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=29.7

Q ss_pred             HhcCcEEEEcC---ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGV---GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~---GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      |++++|+|.|+   ||+|.++++.|++.|. ++.++|.+
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~   42 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFD   42 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECS
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecC
Confidence            66788999995   9999999999999996 57777753

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.91  E-value=0.12  Score=49.63  Aligned_cols=35  Identities=9%  Similarity=0.153  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+.+|.|||+|..|+.+|.+|++.|. +++++|.+.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            46799999999999999999999997 688887653

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.91  E-value=0.026  Score=50.51  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      +..||+|+|+|.+|+.++..|+..|. ++++++|.+.
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34689999999999999999999985 5899999764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=94.89  E-value=0.013  Score=51.29  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+++ +|+|+|+|++|..++..|...|+ +++++|.+
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~  148 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRT  148 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3567 99999999999999999999998 89998754

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=94.87  E-value=0.052  Score=47.56  Aligned_cols=87  Identities=16%  Similarity=0.130  Sum_probs=57.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++|.++|-|. +|+|.++|+.|++.|. ++.+.|.+.             +     +.+ ..+.+.+..+.  +..+.
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~-------------~-----~~~-~~~~~~~~~~~--~~~~~   61 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHA-------------P-----DGA-FLDALAQRQPR--ATYLP   61 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC-------------C-----CHH-HHHHHHHHCTT--CEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCc-------------c-----cHH-HHHHHHhcCCC--EEEEE
Confidence            577888888865 6999999999999996 566766432             1     111 22345555554  44566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+...+++++....+.+.|++|+..
T Consensus        62 ~Dv~~~~~v~~~v~~~~~~~G~iDiLVNnA   91 (258)
T 4gkb_A           62 VELQDDAQCRDAVAQTIATFGRLDGLVNNA   91 (258)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eecCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            778776666655544333457889999875

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=94.87  E-value=0.052  Score=49.59  Aligned_cols=36  Identities=22%  Similarity=0.186  Sum_probs=26.4

Q ss_pred             hcCcEEEEcCChHHHH-HHHHHHHh-CCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSV-TAEMLTRC-GIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~-va~~La~~-Gvg~i~lvD~D~   51 (292)
                      +..||.|||+|.+|.. .+..|... ++.-..++|.+.
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~   41 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDL   41 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSH
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            3458999999999985 88888775 444444667654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.87  E-value=0.059  Score=47.83  Aligned_cols=90  Identities=13%  Similarity=0.244  Sum_probs=58.7

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC-CCeEEEEe
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP-DVTIEVHN   92 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np-~v~v~~~~   92 (292)
                      +++++|+|.| .||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+.+... ..++..+.
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~   84 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNE------------------DRLEETKQQILKAGVPAEKINAVV   84 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCCCCceEEEEe
Confidence            5677788886 57999999999999996 577776432                  244444555554322 11566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        85 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG  115 (297)
T 1xhl_A           85 ADVTEASGQDDIINTTLAKFGKIDILVNNAG  115 (297)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7887766666555322222357899998753

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=94.86  E-value=0.043  Score=52.00  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=19.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHH
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTR   38 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~   38 (292)
                      +.-||.|+|+|.+|+.++..|.+
T Consensus         9 k~irIgIIG~G~VG~~~~~~L~~   31 (444)
T 3mtj_A            9 KPIHVGLLGLGTVGGGTLTVLRR   31 (444)
T ss_dssp             SCEEEEEECCHHHHHHHHHHHHH
T ss_pred             CcccEEEECCCHHHHHHHHHHHH
Confidence            34589999999999999988763

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=94.84  E-value=0.063  Score=51.39  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=56.2

Q ss_pred             cCcEEEEcCChH--HHHHHHHHHHh-C--CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHH----HHhhCCCCe
Q psy2302          17 TLTVIVVGVGGV--GSVTAEMLTRC-G--IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARIT----LQNINPDVT   87 (292)
Q Consensus        17 ~~~V~vvG~Ggl--Gs~va~~La~~-G--vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~----l~~~np~v~   87 (292)
                      ..||+|||+|++  |+.++..|+.. +  ..+++|+|-|.                  .|++.+.+.    +.......+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~------------------e~l~~~~~~~~~~l~~~~~~~~   64 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE------------------ERLDAILTIAKKYVEEVGADLK   64 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH------------------HHHHHHHHHHHHHHHHTTCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCH------------------HHHHHHHHHHHHHhccCCCCcE
Confidence            568999999996  57778888743 3  47899999654                  133332222    223333455


Q ss_pred             EEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHH--HHHHHHHHHHhCC
Q psy2302          88 IEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEA--RMTINMACNQLGQ  140 (292)
Q Consensus        88 v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~--r~~in~~~~~~~~  140 (292)
                      ++..       .++.+.+       .++|+||.++.....  +..-.+...+.++
T Consensus        65 I~~t-------tD~~eal-------~dAD~VIiaagv~~~~~~~~dE~ip~K~g~  105 (480)
T 1obb_A           65 FEKT-------MNLDDVI-------IDADFVINTAMVGGHTYLEKVRQIGEKYGY  105 (480)
T ss_dssp             EEEE-------SCHHHHH-------TTCSEEEECCCTTHHHHHHHHHHHHHHTTC
T ss_pred             EEEE-------CCHHHHh-------CCCCEEEECCCccccccccccccccccccc
Confidence            5543       2332223       789999999976443  3334455666665

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.81  E-value=0.15  Score=45.32  Aligned_cols=82  Identities=21%  Similarity=0.244  Sum_probs=52.8

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.| .|++|+++++.|+..|. +++++|.+.-.                  .....+.+.+.. ...++.+..++
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~------------------~~~~~~~~~~~~-~~~~~~~~~Dl   64 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNS------------------KREAIARIEKIT-GKTPAFHETDV   64 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSS------------------CTHHHHHHHHHH-SCCCEEECCCT
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcc------------------hHHHHHHHHhhc-CCCceEEEeec
Confidence            56899998 59999999999999995 46666542210                  011122233221 12345667778


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+.+.++.     .++|+||.+..
T Consensus        65 ~d~~~~~~~~~~-----~~~d~vih~A~   87 (341)
T 3enk_A           65 SDERALARIFDA-----HPITAAIHFAA   87 (341)
T ss_dssp             TCHHHHHHHHHH-----SCCCEEEECCC
T ss_pred             CCHHHHHHHHhc-----cCCcEEEECcc
Confidence            777777777643     37999998764

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=94.79  E-value=0.025  Score=51.35  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=34.3

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCcccc
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDYDKVEL   54 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~   54 (292)
                      .|.+++|+|||.|. +|..+|++|...| .+++++|.+.+..
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~g-AtVtv~nR~~~~l  214 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDVNNIQK  214 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECSSEEEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCC-CEEEEEeCchHHH
Confidence            78999999999996 5999999999999 5699988765443

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=94.79  E-value=0.13  Score=46.08  Aligned_cols=33  Identities=6%  Similarity=0.038  Sum_probs=26.1

Q ss_pred             cEEEEcCChHHHHH-HHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVT-AEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~v-a~~La~~Gvg~i~lvD~D~   51 (292)
                      ||.|||+|.+|... +..|...|+.-+.+.|.+.
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~   35 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSA   35 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCH
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCH
Confidence            79999999999998 8888886665555777653

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.076  Score=45.75  Aligned_cols=84  Identities=13%  Similarity=0.107  Sum_probs=52.7

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +++++|.|+ ||+|.++++.|++.|.+ ++.+++.+.                  .+.+.+++.+     ..++..+..+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~------------------~~~~~~~~~~-----~~~~~~~~~D   58 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSE------------------APLKKLKEKY-----GDRFFYVVGD   58 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCH------------------HHHHHHHHHH-----GGGEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCH------------------HHHHHHHHHh-----CCceEEEECC
Confidence            467788875 79999999999999865 455544321                  1233333322     2356677778


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+.+..+++.....+.+.|++|.+..
T Consensus        59 v~~~~~v~~~~~~~~~~~g~id~lvnnAg   87 (254)
T 3kzv_A           59 ITEDSVLKQLVNAAVKGHGKIDSLVANAG   87 (254)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHhcCCccEEEECCc
Confidence            87766666555432222357899887753

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.78  E-value=0.043  Score=48.42  Aligned_cols=33  Identities=24%  Similarity=0.445  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            489999999999999999999996 688888653

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=94.78  E-value=0.066  Score=46.68  Aligned_cols=85  Identities=16%  Similarity=0.158  Sum_probs=51.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +..++|+|.|+ |++|.++++.|++.|. ++.++|.+.-                  +.+.+.   .+..  -+++.+..
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~------------------~~~~~~---~~~~--~~~~~~~~   58 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTE------------------ALDDLV---AAYP--DRAEAISL   58 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGG------------------GGHHHH---HHCT--TTEEEEEC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHH---Hhcc--CCceEEEe
Confidence            35677888875 8999999999999996 6777775321                  111111   1221  24566667


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        59 Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag   88 (281)
T 3m1a_A           59 DVTDGERIDVVAADVLARYGRVDVLVNNAG   88 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             eCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            777666665554322112247899887753

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.77  E-value=0.058  Score=47.81  Aligned_cols=32  Identities=28%  Similarity=0.492  Sum_probs=26.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHh-----CCCeEEEEeC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRC-----GIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~-----Gvg~i~lvD~   49 (292)
                      .||.|+|+|.+|+.++..|++.     |..+++++|.
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            3799999999999999999998     7236777764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=94.76  E-value=0.065  Score=46.36  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=28.8

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..+++++|+|.|+ |++|.++++.|++.|. ++.++|.+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   54 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRS   54 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4677888999975 7999999999999995 57777754

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.75  E-value=0.1  Score=47.45  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|+|+|++|..+++.+...|.++++.+|.+
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~  205 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS  205 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999998888999889998853

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=94.75  E-value=0.14  Score=43.57  Aligned_cols=82  Identities=17%  Similarity=0.338  Sum_probs=55.6

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+.+.   +..  ++....
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~---~~~--~~~~~~   66 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNE------------------EKLKSLGNA---LKD--NYTIEV   66 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHH---HCS--SEEEEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHHH---hcc--CccEEE
Confidence            467889999975 7999999999999995 577777432                  233333333   222  455566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.++++.    +.+.|+||.+..
T Consensus        67 ~D~~~~~~~~~~~~~----~~~id~li~~Ag   93 (249)
T 3f9i_A           67 CNLANKEECSNLISK----TSNLDILVCNAG   93 (249)
T ss_dssp             CCTTSHHHHHHHHHT----CSCCSEEEECCC
T ss_pred             cCCCCHHHHHHHHHh----cCCCCEEEECCC
Confidence            677776777766653    247899988764

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.73  E-value=0.025  Score=50.46  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD   48 (292)
                      .|+.++|+|+|.|+ +|..+|..|.+.|. ++++.+
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~h  192 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTH  192 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence            68999999999988 89999999999987 678764

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=94.73  E-value=0.19  Score=48.55  Aligned_cols=98  Identities=22%  Similarity=0.175  Sum_probs=63.9

Q ss_pred             cCcEEEE-cCChHHHHHHHHHHHhCCCeEEEE-eCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVV-GVGGVGSVTAEMLTRCGIGKLILF-DYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vv-G~GglGs~va~~La~~Gvg~i~lv-D~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +++++|. |.||+|..+++.|++.|..++.++ +........-     ...+....+.+.+.+.|.+.  ..++..+..+
T Consensus       251 ~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~--g~~v~~~~~D  323 (525)
T 3qp9_A          251 DGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEG-----TSGAAEDSGLAGLVAELADL--GATATVVTCD  323 (525)
T ss_dssp             TSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC--------------------CHHHHHHHHHH--TCEEEEEECC
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCcccc-----ccccccCHHHHHHHHHHHhc--CCEEEEEECC
Confidence            3455555 578999999999999999999987 6543221000     00112234445566666665  4577888889


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +++.+.+..+++... .+.+.|.||.+.
T Consensus       324 vtd~~~v~~~~~~i~-~~g~id~vVh~A  350 (525)
T 3qp9_A          324 LTDAEAAARLLAGVS-DAHPLSAVLHLP  350 (525)
T ss_dssp             TTSHHHHHHHHHTSC-TTSCEEEEEECC
T ss_pred             CCCHHHHHHHHHHHH-hcCCCcEEEECC
Confidence            998888888887655 457899999876

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=94.73  E-value=0.15  Score=48.33  Aligned_cols=118  Identities=17%  Similarity=0.120  Sum_probs=64.2

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhC-C-CeEEEEeCCcccccCCCC--CccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCG-I-GKLILFDYDKVELANMNR--LFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~G-v-g~i~lvD~D~V~~sNl~R--~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      .+.++|+|.|+ |.+|++++..|++.+ + .++.+++...-....+.|  ..+..   |.+.  .. +.+.... .-+++
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~---~~~~--~~-~~~~~~~-~~~v~  143 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDS---GDPE--LL-RHFKELA-ADRLE  143 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCS---SCHH--HH-HHHHHHH-TTTEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHh---cchh--hh-hhhhhhc-cCceE
Confidence            35789999996 899999999999983 1 477777743211111111  00000   0000  00 1111111 13566


Q ss_pred             EEecccc------chhhHHHHHhcCCCCCCCcceEEeccCC-------------HHHHHHHHHHHHHhCC-ceeecC
Q psy2302          90 VHNFNIT------LLRKVGALAVQGSLTEGPVDLVLSCVDN-------------FEARMTINMACNQLGQ-TWFESG  146 (292)
Q Consensus        90 ~~~~~i~------~~~~~~~~i~~~~~~~~~~DlVv~a~d~-------------~~~r~~in~~~~~~~~-p~i~~~  146 (292)
                      .+..+++      +.+.+...+       .++|+||.+...             ......+-++|.+.++ .+++.+
T Consensus       144 ~v~~Dl~~~~~gld~~~~~~~~-------~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iS  213 (478)
T 4dqv_A          144 VVAGDKSEPDLGLDQPMWRRLA-------ETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVS  213 (478)
T ss_dssp             EEECCTTSGGGGCCHHHHHHHH-------HHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEE
T ss_pred             EEEeECCCcccCCCHHHHHHHH-------cCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            6777775      334555555       478999987642             2233456667777765 555543

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=94.72  E-value=0.038  Score=50.52  Aligned_cols=34  Identities=12%  Similarity=0.169  Sum_probs=25.5

Q ss_pred             cCcEEEEcCChHHHH-HHHHHHHh-CCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSV-TAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~-va~~La~~-Gvg~i~lvD~D   50 (292)
                      ..||.|||+|.+|.. .+..|... ++.-..+.|.+
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~   40 (362)
T 3fhl_A            5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERS   40 (362)
T ss_dssp             CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSS
T ss_pred             ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCC
Confidence            358999999999996 77777765 45444566765

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.72  E-value=0.068  Score=47.73  Aligned_cols=119  Identities=15%  Similarity=0.181  Sum_probs=64.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++||.+||+|-.|..+|.+|++.|. +++++|.+.=....+..       .|-.-++.    +.+.-....+...-  +.
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~-------~G~~~~~s----~~e~~~~~dvvi~~--l~   70 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTASKAEPLTK-------LGATVVEN----AIDAITPGGIVFSV--LA   70 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC-EEEEC-------CTTTT-------TTCEECSS----GGGGCCTTCEEEEC--CS
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH-------cCCeEeCC----HHHHHhcCCceeee--cc
Confidence            4689999999999999999999996 47777744322222211       12111111    11111122222111  11


Q ss_pred             chhhHHHHHhcC-CCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          97 LLRKVGALAVQG-SLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        97 ~~~~~~~~i~~~-~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      +.....+.+... .....+-+++||++. ++.....+.+.+.++|+-|+++.+++
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsG  125 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFA  125 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEEC
T ss_pred             chhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCC
Confidence            112222111000 000145668887654 57777888999999999999998876

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.70  E-value=0.054  Score=51.79  Aligned_cols=35  Identities=29%  Similarity=0.557  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+.||.|||+|.+|..+|..|++.|. +++++|.|.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            46799999999999999999999996 689998764

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=94.67  E-value=0.022  Score=48.59  Aligned_cols=90  Identities=16%  Similarity=0.216  Sum_probs=58.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHH--HhCCCeEEEEeCCcccccCCCC-CccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLT--RCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La--~~Gvg~i~lvD~D~V~~sNl~R-~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ..+|+|+|+|.+|..++..+.  ..|+.=..++|.|.-.  ..++ ..                      ..+.|..   
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~--kiG~~~i----------------------~GvpV~~---  136 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSND--LVGKTTE----------------------DGIPVYG---  136 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTST--TTTCBCT----------------------TCCBEEE---
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchh--ccCceeE----------------------CCeEEeC---
Confidence            468999999999999998843  3455567788877520  1111 10                      1344442   


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                          .+++.+++++     .+.|.++.|+.+... ..+.+.+.+.|+.-|
T Consensus       137 ----~~dL~~~v~~-----~~Id~vIIAvPs~~a-q~v~d~lv~~GIk~I  176 (212)
T 3keo_A          137 ----ISTINDHLID-----SDIETAILTVPSTEA-QEVADILVKAGIKGI  176 (212)
T ss_dssp             ----GGGHHHHC-C-----CSCCEEEECSCGGGH-HHHHHHHHHHTCCEE
T ss_pred             ----HHHHHHHHHH-----cCCCEEEEecCchhH-HHHHHHHHHcCCCEE
Confidence                1456666643     478999999987654 456778888887544

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=94.66  E-value=0.076  Score=46.83  Aligned_cols=90  Identities=16%  Similarity=0.140  Sum_probs=56.6

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe-CCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFD-YDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD-~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .|++++|+|.| .||+|.++++.|++.|. ++.++| .+.                  .+.+.+.+.+.+.. ..++..+
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~------------------~~~~~~~~~l~~~~-~~~~~~~   65 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSA------------------AEANALSATLNARR-PNSAITV   65 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCH------------------HHHHHHHHHHHHHS-TTCEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCH------------------HHHHHHHHHHhhhc-CCeeEEE
Confidence            56777888886 57999999999999996 577776 322                  24444555554222 2356666


Q ss_pred             eccccchh-----------------hHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLR-----------------KVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~-----------------~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+                 .+..+++.....+.+.|++|.+..
T Consensus        66 ~~Dl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (291)
T 1e7w_A           66 QADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNAS  114 (291)
T ss_dssp             ECCCSSSCBCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EeecCCcccccccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            77777655                 555444322222357899998763

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=94.66  E-value=0.095  Score=45.78  Aligned_cols=31  Identities=23%  Similarity=0.418  Sum_probs=27.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+|.|+|+|.+|+.++..|++ |. +++++|.+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~   32 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRT   32 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCC
Confidence            479999999999999999999 86 58887754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.64  E-value=0.24  Score=44.41  Aligned_cols=84  Identities=13%  Similarity=0.045  Sum_probs=53.3

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ..+++++|+|.|+ |.+|+.+++.|...|. +++++|.+.-.   ...               +.+.+. ..+.  ++.+
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---~~~---------------~~~~~~-~~~~--~~~~   62 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPT---VPS---------------LFETAR-VADG--MQSE   62 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSS---SSC---------------HHHHTT-TTTT--SEEE
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcc---cch---------------hhHhhc-cCCc--eEEE
Confidence            4678899999985 9999999999999985 67777753211   100               011111 1223  3455


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+.+.+.++.     .++|+||.+..
T Consensus        63 ~~Dl~d~~~~~~~~~~-----~~~d~vih~A~   89 (357)
T 1rkx_A           63 IGDIRDQNKLLESIRE-----FQPEIVFHMAA   89 (357)
T ss_dssp             ECCTTCHHHHHHHHHH-----HCCSEEEECCS
T ss_pred             EccccCHHHHHHHHHh-----cCCCEEEECCC
Confidence            6667666666666531     14899998765

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=94.63  E-value=0.075  Score=47.89  Aligned_cols=89  Identities=17%  Similarity=0.175  Sum_probs=56.1

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe-CCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFD-YDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD-~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      |++++|+|.| .||+|.++++.|++.|. ++.++| .+.                  .+.+.+.+.+....+ .++..+.
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~------------------~~~~~~~~~l~~~~~-~~~~~~~  103 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSA------------------AEANALSATLNARRP-NSAITVQ  103 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCH------------------HHHHHHHHHHHHHST-TCEEEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCH------------------HHHHHHHHHHHhhcC-CeEEEEE
Confidence            6677888886 57999999999999996 577776 321                  244455555542222 4566666


Q ss_pred             ccccchh-----------------hHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLR-----------------KVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~-----------------~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+                 .+..+++.....+.+.|+||.+..
T Consensus       104 ~Dl~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG  151 (328)
T 2qhx_A          104 ADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNAS  151 (328)
T ss_dssp             CCCSSSCBCC-------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eeCCCchhccccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            7776655                 555444322112357899998763

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=94.63  E-value=0.1  Score=47.12  Aligned_cols=89  Identities=21%  Similarity=0.299  Sum_probs=51.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      .||.|||+|.+|...+..|.+. ++.-..+.|.+.                  .|++.++++.    +..+  .+     
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~------------------~~~~~~~~~~----~~~~--~~-----   53 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVRE------------------DRLREMKEKL----GVEK--AY-----   53 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCH------------------HHHHHHHHHH----TCSE--EE-----
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCH------------------HHHHHHHHHh----CCCc--ee-----
Confidence            4899999999999999999874 333334556432                  2443333322    1111  11     


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                        .++++++..     .++|+|+.|+.+..- ..+...+.+.|++++
T Consensus        54 --~~~~~ll~~-----~~~D~V~i~tp~~~h-~~~~~~al~~gk~v~   92 (344)
T 3ezy_A           54 --KDPHELIED-----PNVDAVLVCSSTNTH-SELVIACAKAKKHVF   92 (344)
T ss_dssp             --SSHHHHHHC-----TTCCEEEECSCGGGH-HHHHHHHHHTTCEEE
T ss_pred             --CCHHHHhcC-----CCCCEEEEcCCCcch-HHHHHHHHhcCCeEE
Confidence              345555532     478888888866432 223334556666543

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=94.62  E-value=0.041  Score=49.14  Aligned_cols=106  Identities=16%  Similarity=0.129  Sum_probs=55.6

Q ss_pred             CChHHHHHHHhc-CcEEEEc-CChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302           6 MGIVENYEHIRT-LTVIVVG-VGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus         6 ~G~~~~q~~L~~-~~V~vvG-~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      ||-.++|..+.. .||+|+| +|.+|..+++.+... ++.=..++|...-   +     +.-.|+|.         +..+
T Consensus         9 ~~~~~~~~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~---~-----~~G~d~ge---------l~G~   71 (288)
T 3ijp_A            9 MGTLEAQTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS---S-----FVDKDASI---------LIGS   71 (288)
T ss_dssp             ------------CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC---T-----TTTSBGGG---------GTTC
T ss_pred             cchhhhhhhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---c-----ccccchHH---------hhcc
Confidence            666688876654 5899999 999999999998754 3333333443210   0     00112221         0000


Q ss_pred             -CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          83 -NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        83 -np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                       ...+.+       +  .++++++       .++|+|||.+. +..-...-.+|.++|+|++.+
T Consensus        72 ~~~gv~v-------~--~dl~~ll-------~~aDVvIDFT~-p~a~~~~~~~~l~~Gv~vViG  118 (288)
T 3ijp_A           72 DFLGVRI-------T--DDPESAF-------SNTEGILDFSQ-PQASVLYANYAAQKSLIHIIG  118 (288)
T ss_dssp             SCCSCBC-------B--SCHHHHT-------TSCSEEEECSC-HHHHHHHHHHHHHHTCEEEEC
T ss_pred             CcCCcee-------e--CCHHHHh-------cCCCEEEEcCC-HHHHHHHHHHHHHcCCCEEEE
Confidence             012222       1  3555554       57999999984 455555667899999999864

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=94.60  E-value=0.25  Score=47.35  Aligned_cols=88  Identities=20%  Similarity=0.320  Sum_probs=63.9

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++++|.| .||+|..+++.|++.|..++.+++.....               ..+++.+.+.+.+.  ..++..+..+++
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~---------------~~~~~~l~~~l~~~--g~~v~~~~~Dvt  302 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGAD---------------APGAAELRAELEQL--GVRVTIAACDAA  302 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGG---------------STTHHHHHHHHHHT--TCEEEEEECCTT
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCC---------------hHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence            6777885 68999999999999999999997753221               12344455556554  467888888998


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+..+++..... .+.|+||.+..
T Consensus       303 d~~~v~~~~~~i~~~-g~ld~vVh~AG  328 (496)
T 3mje_A          303 DREALAALLAELPED-APLTAVFHSAG  328 (496)
T ss_dssp             CHHHHHHHHHTCCTT-SCEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHh-CCCeEEEECCc
Confidence            888888887654433 47899997753

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=94.59  E-value=0.13  Score=46.34  Aligned_cols=88  Identities=6%  Similarity=0.045  Sum_probs=52.8

Q ss_pred             cEEEEcCChHHHH-HHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          19 TVIVVGVGGVGSV-TAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        19 ~V~vvG~GglGs~-va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ||.|||+|.+|.. .+..|... ++.=..+.|.|.                  .|++.++++.    +-.+  .+     
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~------------------~~a~~~a~~~----g~~~--~y-----   75 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDL------------------TRAREMADRF----SVPH--AF-----   75 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSH------------------HHHHHHHHHH----TCSE--EE-----
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCH------------------HHHHHHHHHc----CCCe--ee-----
Confidence            8999999999975 57777765 333334556433                  3555554433    1112  22     


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                        .+++++++.     .+.|+|+.|+.+. ....+...|.+.|++++
T Consensus        76 --~d~~ell~~-----~~iDaV~I~tP~~-~H~~~~~~al~aGkhVl  114 (350)
T 4had_A           76 --GSYEEMLAS-----DVIDAVYIPLPTS-QHIEWSIKAADAGKHVV  114 (350)
T ss_dssp             --SSHHHHHHC-----SSCSEEEECSCGG-GHHHHHHHHHHTTCEEE
T ss_pred             --CCHHHHhcC-----CCCCEEEEeCCCc-hhHHHHHHHHhcCCEEE
Confidence              456666653     5799999998763 33444455666666543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.59  E-value=0.028  Score=50.49  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|+|+|.|+ +|..+|.+|.+.|. ++++++.
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~  197 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHS  197 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            57899999999998 79999999999997 5888764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=94.58  E-value=0.033  Score=50.70  Aligned_cols=33  Identities=27%  Similarity=0.525  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +.||+|||+|..|..+|..|++.|+ +++|+|-+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~   33 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGI-KVTIYERN   33 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            4589999999999999999999998 58888754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.57  E-value=0.13  Score=49.16  Aligned_cols=32  Identities=31%  Similarity=0.474  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+|.|||+|.+|+.++.+|++.|. +++++|.+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~   33 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNRT   33 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            379999999999999999999997 58888864

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.57  E-value=0.27  Score=44.58  Aligned_cols=98  Identities=15%  Similarity=0.101  Sum_probs=61.0

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc-
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN-   94 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~-   94 (292)
                      .++|+|.|+ |.+|+.+++.|+..|. ++++++.+.-                +.++    +.+.. .+  .++.+..+ 
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~----------------~~~~----~~l~~-~~--~v~~v~~D~   60 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLK----------------GLIA----EELQA-IP--NVTLFQGPL   60 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSC----------------SHHH----HHHHT-ST--TEEEEESCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCC----------------hhhH----HHHhh-cC--CcEEEECCc
Confidence            578999996 9999999999999884 5666654220                1111    22222 12  34555667 


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCH-----HHHHHHHHHHHHhC-C-ceeec
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNF-----EARMTINMACNQLG-Q-TWFES  145 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~-----~~r~~in~~~~~~~-~-p~i~~  145 (292)
                      +++.+.+...+       .++|+||.+....     ..-..+-++|.+.+ + .+|+.
T Consensus        61 l~d~~~l~~~~-------~~~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~  111 (352)
T 1xgk_A           61 LNNVPLMDTLF-------EGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYS  111 (352)
T ss_dssp             TTCHHHHHHHH-------TTCSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred             cCCHHHHHHHH-------hcCCEEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEe
Confidence            76666676665       6789988655321     12255667777877 5 45443

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.57  E-value=0.072  Score=48.83  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~  216 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQ  216 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46799999999999999999999999899988754

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=94.55  E-value=0.081  Score=46.32  Aligned_cols=89  Identities=18%  Similarity=0.209  Sum_probs=56.6

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.| .||+|.++++.|++.|. ++.++|.+.-                 .+.+.+.+.+.+..  .++..+..
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~-----------------~~~~~~~~~~~~~~--~~~~~~~~   86 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANST-----------------ESAEEVVAAIKKNG--SDAACVKA   86 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCH-----------------HHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch-----------------HHHHHHHHHHHHhC--CCeEEEEc
Confidence            5667788875 57999999999999996 5767664320                 12334445555443  34566677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...++.....+.+.|+||.+..
T Consensus        87 D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag  116 (283)
T 1g0o_A           87 NVGVVEDIVRMFEEAVKIFGKLDIVCSNSG  116 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777766665544322222357899998763

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=94.53  E-value=0.33  Score=42.99  Aligned_cols=100  Identities=16%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             cEEEEc-CChHHHHHHHHHHHh---CC--CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          19 TVIVVG-VGGVGSVTAEMLTRC---GI--GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        19 ~V~vvG-~GglGs~va~~La~~---Gv--g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|+|.| .|.+|+.+++.|+..   |+  .+++++|...-. .+.                   +.+..+...-+++.+.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~-~~~-------------------~~~~~~~~~~~~~~~~   61 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA-GNR-------------------ANLAPVDADPRLRFVH   61 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTT-CCG-------------------GGGGGGTTCTTEEEEE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCcc-Cch-------------------hhhhhcccCCCeEEEE
Confidence            699998 599999999999996   53  478887753210 000                   0011111122455666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCH-----------------HHHHHHHHHHHHhCC-ceeec
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF-----------------EARMTINMACNQLGQ-TWFES  145 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~-----------------~~r~~in~~~~~~~~-p~i~~  145 (292)
                      .++++.+.+.+.+       .++|+||.+....                 .....+-++|.+.++ .+|+.
T Consensus        62 ~Dl~d~~~~~~~~-------~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~  125 (337)
T 1r6d_A           62 GDIRDAGLLAREL-------RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHV  125 (337)
T ss_dssp             CCTTCHHHHHHHT-------TTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCHHHHHHHh-------cCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence            7777666666654       6899999876421                 112345667777776 45543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=94.52  E-value=0.12  Score=46.93  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=26.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D   50 (292)
                      ..||.|||+|.+|...+..|.+. |+.-..+.|.+
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~   39 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRT   39 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCC
Confidence            35899999999999999999876 44444466653

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.51  E-value=0.059  Score=48.82  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|+|+|++|..+++.+...|.++++.+|.+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~  201 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPS  201 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46789999999999999999999998788887743

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.49  E-value=0.14  Score=46.71  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus       191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~  224 (371)
T 1f8f_A          191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV  224 (371)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            5689999999999999999888999888888753

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=94.49  E-value=0.09  Score=45.10  Aligned_cols=87  Identities=17%  Similarity=0.287  Sum_probs=55.2

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.| .||+|.++++.|++.|. ++.++|.+.-                 .+.+   +.+.+..  .++..+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~-----------------~~~~---~~~~~~~--~~~~~~~   60 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA-----------------PEAE---AAIRNLG--RRVLTVK   60 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC-----------------HHHH---HHHHHTT--CCEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCch-----------------hHHH---HHHHhcC--CcEEEEE
Confidence            36678899996 57999999999999996 5777764320                 1211   1333332  3566677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+...++.....+.+.|+||.+..
T Consensus        61 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg   91 (249)
T 2ew8_A           61 CDVSQPGDVEAFGKQVISTFGRCDILVNNAG   91 (249)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7777766666554322112357899998753

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=94.47  E-value=0.14  Score=45.35  Aligned_cols=74  Identities=15%  Similarity=0.169  Sum_probs=46.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+ |.+|+.+++.|...| -+++++|...-..         .               ..+.+  .++.+..+++
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~---------~---------------~~~~~--~~~~~~~D~~   54 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGH---------E---------------DAITE--GAKFYNGDLR   54 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCC---------G---------------GGSCT--TSEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCcCc---------h---------------hhcCC--CcEEEECCCC
Confidence            47999975 999999999999999 4677776432100         0               00111  2334455666


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+.+.++.     .++|+||.+..
T Consensus        55 ~~~~~~~~~~~-----~~~d~vih~a~   76 (330)
T 2c20_A           55 DKAFLRDVFTQ-----ENIEAVMHFAA   76 (330)
T ss_dssp             CHHHHHHHHHH-----SCEEEEEECCC
T ss_pred             CHHHHHHHHhh-----cCCCEEEECCc
Confidence            65666666532     27899998764

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=94.46  E-value=0.2  Score=44.48  Aligned_cols=32  Identities=28%  Similarity=0.430  Sum_probs=26.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeCC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~-Gvg~i~lvD~D   50 (292)
                      ++|+|.|+ |.+|+.+++.|... |. +++++|..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~   34 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIG   34 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            37999998 99999999999998 64 67777754

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=94.45  E-value=0.077  Score=47.67  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=25.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D   50 (292)
                      .||.|||+|.+|...+..|.+. ++.-..+.|.+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~   37 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAF   37 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCC
Confidence            4899999999999999999985 44434466654

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=94.45  E-value=0.059  Score=51.12  Aligned_cols=94  Identities=15%  Similarity=0.123  Sum_probs=57.4

Q ss_pred             hcCcEEEEcCChH--HHHHHHHHHHhC--CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          16 RTLTVIVVGVGGV--GSVTAEMLTRCG--IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        16 ~~~~V~vvG~Ggl--Gs~va~~La~~G--vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ++.||+|||+|++  |..++..|+..-  .++++|+|-|.=..   .            |.....+.+.+  ...+++..
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~l---e------------~~~~~~~~l~~--~~~~I~~T   66 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAA---Q------------KNEVIGNHSGN--GRWRYEAV   66 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHH---H------------HHHHHHTTSTT--SCEEEEEE
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHH---H------------HHHHHHHHHhc--cCCeEEEE
Confidence            4569999999996  689999988732  34999999664110   0            11111111221  23344332


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc--CCHHHHHHHHHHHHHhCC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV--DNFEARMTINMACNQLGQ  140 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~--d~~~~r~~in~~~~~~~~  140 (292)
                             .++++-+       .++|+||.+.  ...+.|..=.+...++|+
T Consensus        67 -------tD~~eAl-------~dADfVI~airvG~~~~~~~De~ip~k~G~  103 (450)
T 3fef_A           67 -------STLKKAL-------SAADIVIISILPGSLDDMEVDVHLPERCGI  103 (450)
T ss_dssp             -------SSHHHHH-------TTCSEEEECCCSSCHHHHHHHHHGGGGGTC
T ss_pred             -------CCHHHHh-------cCCCEEEeccccCCcccchhhhhhhhccCc
Confidence                   2344333       7899999998  566766655556677766

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.43  E-value=0.035  Score=48.52  Aligned_cols=41  Identities=27%  Similarity=0.474  Sum_probs=31.8

Q ss_pred             HHHHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          10 ENYEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        10 ~~q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+..+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.
T Consensus         7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~   48 (269)
T 3vtz_A            7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDE   48 (269)
T ss_dssp             ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            3445788999999976 6899999999999996 477777543

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=94.43  E-value=0.2  Score=45.14  Aligned_cols=73  Identities=12%  Similarity=0.196  Sum_probs=52.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..++|+|||+|+.|...+..|... ++.++.++|.+.                  .|++.+++++....  +.+. .   
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~------------------~~a~~la~~~~~~~--~~~~-~---  179 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVRE------------------KAAKKFVSYCEDRG--ISAS-V---  179 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSH------------------HHHHHHHHHHHHTT--CCEE-E---
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCH------------------HHHHHHHHHHHhcC--ceEE-E---
Confidence            467899999999999999999875 688999977543                  37777777766421  3333 2   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                          +++++.       . ++|+|+.||.+
T Consensus       180 ----~~~~e~-------v-~aDvVi~aTp~  197 (322)
T 1omo_A          180 ----QPAEEA-------S-RCDVLVTTTPS  197 (322)
T ss_dssp             ----CCHHHH-------T-SSSEEEECCCC
T ss_pred             ----CCHHHH-------h-CCCEEEEeeCC
Confidence                223332       3 69999999986

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=94.42  E-value=0.33  Score=43.18  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.|+ |.+|+.+++.|+..|. +++++|...-...+.       .. ...+.    +.+.+.. ..+++.+..++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~r~~-------~~-~~~~~----~~l~~~~-~~~~~~~~~D~   67 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHNAFRGG-------GS-LPESL----RRVQELT-GRSVEFEEMDI   67 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSSSCBCS-------SS-SBHHH----HHHHHHH-TCCCEEEECCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCcccccc-------cc-cHHHH----HHHHhcc-CCceEEEECCC
Confidence            368999985 9999999999999995 577776432110000       00 01111    2232221 12345556677


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+.+.++.     .++|+||.+..
T Consensus        68 ~~~~~~~~~~~~-----~~~d~vih~A~   90 (348)
T 1ek6_A           68 LDQGALQRLFKK-----YSFMAVIHFAG   90 (348)
T ss_dssp             TCHHHHHHHHHH-----CCEEEEEECCS
T ss_pred             CCHHHHHHHHHh-----cCCCEEEECCC
Confidence            776667666632     17999998864

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.42  E-value=0.053  Score=46.75  Aligned_cols=90  Identities=9%  Similarity=0.108  Sum_probs=54.9

Q ss_pred             HHHhcCcEEEEc-CChHHHHHHHHHHHhCC--CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          13 EHIRTLTVIVVG-VGGVGSVTAEMLTRCGI--GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        13 ~~L~~~~V~vvG-~GglGs~va~~La~~Gv--g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ..++.++|+|.| .|++|.++++.|++.|.  .++.++|.+.-                  +.+.+ +.+.+..+  ++.
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~------------------~~~~~-~~l~~~~~--~~~   75 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNRE------------------QAKEL-EDLAKNHS--NIH   75 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTT------------------SCHHH-HHHHHHCT--TEE
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChh------------------hhHHH-HHhhccCC--ceE
Confidence            456778888886 48999999999999995  67888875421                  01112 22333333  456


Q ss_pred             EEeccccchhhHHHHHhcCCCCCC--CcceEEeccC
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEG--PVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~--~~DlVv~a~d  123 (292)
                      .+..++++.+.+.++++.....+.  +.|+||.+..
T Consensus        76 ~~~~Dl~~~~~v~~~~~~~~~~~g~~~id~li~~Ag  111 (267)
T 1sny_A           76 ILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAG  111 (267)
T ss_dssp             EEECCTTCGGGHHHHHHHHHHHHGGGCCSEEEECCC
T ss_pred             EEEecCCChHHHHHHHHHHHHhcCCCCccEEEECCC
Confidence            677777776666655432111112  6899998764

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=94.41  E-value=0.12  Score=45.84  Aligned_cols=36  Identities=14%  Similarity=0.318  Sum_probs=26.1

Q ss_pred             HhcCcEEEEcCChHHHH-HHHHHHHh-CCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSV-TAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~-va~~La~~-Gvg~i~lvD~D   50 (292)
                      ++..||.|||+|.+|.. .+..|.+. |+.-..++|.+
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~   41 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPN   41 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSC
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            45679999999999996 88888764 44444466654

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=94.39  E-value=0.15  Score=44.94  Aligned_cols=29  Identities=24%  Similarity=0.497  Sum_probs=23.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      ++|+|.|+ |.+|+++++.|...|  +...++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~   31 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVID   31 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEEC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEE
Confidence            47999986 899999999999998  455544

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.38  E-value=0.04  Score=48.96  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|.+++|.|+|+|.+|..+++.|...|. +++++|..
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~  187 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARE  187 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            5788999999999999999999999998 89998854

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.38  E-value=0.19  Score=45.10  Aligned_cols=35  Identities=29%  Similarity=0.502  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      ..||.|+|+|.+|+.++..|+..|. .++.|+|-+.
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            4689999999999999999999985 5799999653

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.35  E-value=0.023  Score=50.72  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD   48 (292)
                      .++.++|+|+|.|. +|..+|..|.+.| .++++++
T Consensus       156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~h  190 (288)
T 1b0a_A          156 DTFGLNAVVIGASNIVGRPMSMELLLAG-CTTTVTH  190 (288)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTT-CEEEEEC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHCC-CeEEEEe
Confidence            68999999999997 6999999999998 5688875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.34  E-value=0.036  Score=48.79  Aligned_cols=30  Identities=30%  Similarity=0.407  Sum_probs=27.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      .+|.|||+|.+|+.++..|++.|. +++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~   33 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT   33 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc
Confidence            489999999999999999999986 678877

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=94.32  E-value=0.22  Score=45.26  Aligned_cols=33  Identities=6%  Similarity=0.050  Sum_probs=24.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~   49 (292)
                      ..||.|||+|.+|...+..|... ++.-..+.|.
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~   39 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASR   39 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECS
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcC
Confidence            45899999999999999998875 3333345554

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.32  E-value=0.032  Score=49.56  Aligned_cols=35  Identities=31%  Similarity=0.389  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhC-CCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCG-IGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~G-vg~i~lvD   48 (292)
                      .|+.++|+|+|.|. +|..++.+|.+.| -.++++.+
T Consensus       155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h  191 (281)
T 2c2x_A          155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCH  191 (281)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence            68999999999997 5999999999984 46788864

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=94.31  E-value=0.11  Score=46.75  Aligned_cols=33  Identities=3%  Similarity=-0.130  Sum_probs=24.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~   49 (292)
                      ..||.|||+|.+|...+..|.+. ++.-..++|.
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~   38 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASR   38 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCS
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeC
Confidence            45899999999999999999885 3332335454

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=94.31  E-value=0.16  Score=45.94  Aligned_cols=90  Identities=16%  Similarity=0.084  Sum_probs=53.5

Q ss_pred             hcCcEEEEcCC-hHHHHHHHHHHHh--CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          16 RTLTVIVVGVG-GVGSVTAEMLTRC--GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        16 ~~~~V~vvG~G-glGs~va~~La~~--Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +..||.|||+| ..|...+..|...  ++.-..+.|.+.                  .|++.++++..    ..+  .+ 
T Consensus        17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~------------------~~~~~~a~~~~----~~~--~~-   71 (340)
T 1zh8_A           17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTR------------------SHAEEFAKMVG----NPA--VF-   71 (340)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSH------------------HHHHHHHHHHS----SCE--EE-
T ss_pred             CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCH------------------HHHHHHHHHhC----CCc--cc-
Confidence            34589999999 7999999999876  333335666432                  34444444331    112  22 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                            .+++++++.     .++|+|+.|+.+.. ...+...|.+.|+++
T Consensus        72 ------~~~~~ll~~-----~~vD~V~i~tp~~~-H~~~~~~al~aGkhV  109 (340)
T 1zh8_A           72 ------DSYEELLES-----GLVDAVDLTLPVEL-NLPFIEKALRKGVHV  109 (340)
T ss_dssp             ------SCHHHHHHS-----SCCSEEEECCCGGG-HHHHHHHHHHTTCEE
T ss_pred             ------CCHHHHhcC-----CCCCEEEEeCCchH-HHHHHHHHHHCCCcE
Confidence                  345666643     46899999986532 333444555666644

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=94.30  E-value=0.14  Score=47.66  Aligned_cols=105  Identities=13%  Similarity=0.136  Sum_probs=58.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-------eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHH--HhhCCCCeE
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-------KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITL--QNINPDVTI   88 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-------~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l--~~~np~v~v   88 (292)
                      .||.|+|+|+.|+++|..|++.|-+       .++|.-.|.             +-.++.-++...++=  .++-|++++
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~-------------e~~~~~~~e~in~~~~N~~YLpgv~L  101 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEE-------------EINGEKLTEIINTRHQNVKYLPGITL  101 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCC-------------BSSSCBHHHHHTTTCCBTTTBTTCCC
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcch-------------HhhhHHHHHHHHhcCcCcccCCCCcC
Confidence            4899999999999999999998743       355543321             001111111111000  001123332


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHH--HhCCceeec
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACN--QLGQTWFES  145 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~--~~~~p~i~~  145 (292)
                         +..+.-..++.+.+       .+.|+||.++.+...|..+.++..  ..+.+++.+
T Consensus       102 ---p~~i~~t~dl~~al-------~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~  150 (391)
T 4fgw_A          102 ---PDNLVANPDLIDSV-------KDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISC  150 (391)
T ss_dssp             ---CSSEEEESCHHHHH-------TTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEEC
T ss_pred             ---CCCcEEeCCHHHHH-------hcCCEEEEECChhhhHHHHHHhccccCCCceeEEe
Confidence               11111113555544       689999999999888888777642  234455543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.30  E-value=0.12  Score=49.25  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D~   51 (292)
                      .||.|||+|.+|..+|..|++.|.| +++++|.+.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999999754 699998654

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=94.28  E-value=0.38  Score=45.83  Aligned_cols=89  Identities=25%  Similarity=0.289  Sum_probs=63.4

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.| .|++|..+++.|++.|..++.+++...-.               .++.+.+.+.|...  ..+++.+..++
T Consensus       226 ~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~---------------~~~~~~l~~~l~~~--g~~v~~~~~Dv  288 (486)
T 2fr1_A          226 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD---------------ADGAGELVAELEAL--GARTTVAACDV  288 (486)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG---------------STTHHHHHHHHHHT--TCEEEEEECCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCC---------------cHHHHHHHHHHHhc--CCEEEEEEeCC
Confidence            56777875 78999999999999999999998754311               12334445555554  35677888888


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+...++... .+.+.|.||.+..
T Consensus       289 ~d~~~v~~~~~~i~-~~g~ld~VIh~AG  315 (486)
T 2fr1_A          289 TDRESVRELLGGIG-DDVPLSAVFHAAA  315 (486)
T ss_dssp             TCHHHHHHHHHTSC-TTSCEEEEEECCC
T ss_pred             CCHHHHHHHHHHHH-hcCCCcEEEECCc
Confidence            88788887776542 2357899998763

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.27  E-value=0.036  Score=49.32  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..+|.|||+|.+|..++..|++.|. +++++|.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999996 688888654

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.27  E-value=0.16  Score=45.75  Aligned_cols=33  Identities=33%  Similarity=0.570  Sum_probs=28.2

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHh-CC-CeEEEEeCC
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRC-GI-GKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~-Gv-g~i~lvD~D   50 (292)
                      .||.|+| +|.+|..++..|+.. +. .+|.|+|-+
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~   36 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecC
Confidence            3799999 899999999999886 54 589998864

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.26  E-value=0.1  Score=47.65  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~  225 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH  225 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            5789999999999999999889999888888743

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=94.26  E-value=0.11  Score=45.32  Aligned_cols=81  Identities=15%  Similarity=0.184  Sum_probs=53.6

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|-| .+|+|.++|+.|++.|. ++.+.|.+.                  .+.+    .+.+..+  ++..+..++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~------------------~~~~----~~~~~~~--~~~~~~~Dv   56 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDE------------------KRSA----DFAKERP--NLFYFHGDV   56 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHH----HHHTTCT--TEEEEECCT
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHH----HHHHhcC--CEEEEEecC
Confidence            57788886 67999999999999996 578887542                  1111    1222222  455667777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+..+.+++.....+.+.|++|+..
T Consensus        57 ~~~~~v~~~v~~~~~~~g~iDiLVNNA   83 (247)
T 3ged_A           57 ADPLTLKKFVEYAMEKLQRIDVLVNNA   83 (247)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            776666665544433457889888765

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=94.25  E-value=0.12  Score=45.43  Aligned_cols=31  Identities=26%  Similarity=0.506  Sum_probs=26.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++|+|.|+ |.+|+++++.|+..|. +++++|.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   32 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVDN   32 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeC
Confidence            47999998 9999999999999986 5777664

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.25  E-value=0.18  Score=45.29  Aligned_cols=33  Identities=30%  Similarity=0.620  Sum_probs=29.1

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      ||+|+|+ |.+|..++..|+..|. .++.|+|-+.
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            7999998 9999999999998774 6799999654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.23  E-value=0.073  Score=47.87  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..+|.|||+|.+|+.++..|++.|.-+++++|.+.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46899999999999999999999955788888653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.22  E-value=0.11  Score=47.42  Aligned_cols=33  Identities=27%  Similarity=0.322  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..+|+|+|+|++|..+++.+...|..+++.+|.
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  228 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI  228 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            568999999999999999998999988888874

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=94.21  E-value=0.082  Score=48.11  Aligned_cols=91  Identities=21%  Similarity=0.210  Sum_probs=52.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhC-CC------eE-EEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCG-IG------KL-ILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD   85 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~G-vg------~i-~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~   85 (292)
                      .+++-||.|||+|.+|..-+..|.... +.      +| .+.|.|                  ..|++.+++++    +.
T Consensus         3 ~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~------------------~~~a~~~a~~~----g~   60 (390)
T 4h3v_A            3 AMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRD------------------AEAVRAAAGKL----GW   60 (390)
T ss_dssp             -CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSS------------------HHHHHHHHHHH----TC
T ss_pred             CCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCC------------------HHHHHHHHHHc----CC
Confidence            345569999999999998888887653 11      22 244432                  23555544443    22


Q ss_pred             CeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302          86 VTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT  141 (292)
Q Consensus        86 v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p  141 (292)
                      .+  .+       .+++++++.     .+.|+|+.|+.+. ....+...|.+.|++
T Consensus        61 ~~--~~-------~d~~~ll~~-----~~iDaV~I~tP~~-~H~~~~~~al~aGkh  101 (390)
T 4h3v_A           61 ST--TE-------TDWRTLLER-----DDVQLVDVCTPGD-SHAEIAIAALEAGKH  101 (390)
T ss_dssp             SE--EE-------SCHHHHTTC-----TTCSEEEECSCGG-GHHHHHHHHHHTTCE
T ss_pred             Cc--cc-------CCHHHHhcC-----CCCCEEEEeCChH-HHHHHHHHHHHcCCC
Confidence            12  12       356666643     5789999998653 233334444555553

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=94.20  E-value=0.2  Score=45.06  Aligned_cols=36  Identities=14%  Similarity=0.214  Sum_probs=26.5

Q ss_pred             hcCcEEEEcCChHHH-HHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGS-VTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs-~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +..||.|||+|..|. ..+..|...|+.-..+.|.+.
T Consensus         3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~   39 (336)
T 2p2s_A            3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDS   39 (336)
T ss_dssp             -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCT
T ss_pred             CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCH
Confidence            456899999999996 577777766765557777643

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=94.15  E-value=0.072  Score=44.97  Aligned_cols=82  Identities=16%  Similarity=0.170  Sum_probs=50.1

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.| .|++|.++++.|++.|. ++.++|.+.                  .+.+.+.+.+    +  ++..+..++
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~----~--~~~~~~~D~   59 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDE------------------KRLQALAAEL----E--GALPLPGDV   59 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHS----T--TCEEEECCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHh----h--hceEEEecC
Confidence            56788885 57999999999999996 577776432                  1222222222    1  344556677


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+.+.+.++.....+.+.|+||.+..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~id~li~~Ag   87 (234)
T 2ehd_A           60 REEGDWARAVAAMEEAFGELSALVNNAG   87 (234)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6656655544322112247899988753

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=94.15  E-value=0.35  Score=46.07  Aligned_cols=93  Identities=18%  Similarity=0.274  Sum_probs=57.9

Q ss_pred             hcCcEEEEcCChH-HHHHHHHHHHh--CC--CeEEEEeCCcccccCCCCCccCcCCCCChHHHHH----HHHHHhhCCCC
Q psy2302          16 RTLTVIVVGVGGV-GSVTAEMLTRC--GI--GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAA----RITLQNINPDV   86 (292)
Q Consensus        16 ~~~~V~vvG~Ggl-Gs~va~~La~~--Gv--g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~----~~~l~~~np~v   86 (292)
                      +..||+|||+|++ |..++..|+..  +.  .++.|+|-|.                  .|++..    ...+.......
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~------------------e~~~~~~~~~~~~l~~~~~~~   88 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK------------------ERQDRIAGACDVFIREKAPDI   88 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH------------------HHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH------------------HHHHHHHHHHHHHhccCCCCC
Confidence            3459999999998 66678888887  55  5799999654                  122222    22223455566


Q ss_pred             eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHH--HHHHHHHHHHHhCC
Q psy2302          87 TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE--ARMTINMACNQLGQ  140 (292)
Q Consensus        87 ~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~--~r~~in~~~~~~~~  140 (292)
                      ++....       ++.+-+       .++|+||.++....  .+..-.....++|+
T Consensus        89 ~I~~t~-------D~~eal-------~~AD~VViaag~~~~~g~~rd~~ip~k~g~  130 (472)
T 1u8x_X           89 EFAATT-------DPEEAF-------TDVDFVMAHIRVGKYAMRALDEQIPLKYGV  130 (472)
T ss_dssp             EEEEES-------CHHHHH-------SSCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             EEEEEC-------CHHHHH-------cCCCEEEEcCCCccccccchhhhhhhhcCc
Confidence            666542       332323       78999999997743  33333444555555

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.14  E-value=0.15  Score=46.35  Aligned_cols=79  Identities=20%  Similarity=0.174  Sum_probs=52.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .++.++|+|.|+ |.+|+.+++.|...|..+++++|...-..  . .. +.                    ..-.++.+.
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~-~~-l~--------------------~~~~v~~~~   84 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE--K-IN-VP--------------------DHPAVRFSE   84 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCC--G-GG-SC--------------------CCTTEEEEC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCc--h-hh-cc--------------------CCCceEEEE
Confidence            467789999996 99999999999999855777776432110  0 00 00                    012355666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++++.+.+.+.+       .++|+||.+..
T Consensus        85 ~Dl~d~~~l~~~~-------~~~d~Vih~A~  108 (377)
T 2q1s_A           85 TSITDDALLASLQ-------DEYDYVFHLAT  108 (377)
T ss_dssp             SCTTCHHHHHHCC-------SCCSEEEECCC
T ss_pred             CCCCCHHHHHHHh-------hCCCEEEECCC
Confidence            6776655555543       58999998764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.13  E-value=0.048  Score=48.62  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=32.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|.+++|.|+|+|.+|..+++.|...|. +++++|.+
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~  189 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS  189 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5778999999999999999999999997 89998864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.12  E-value=0.17  Score=45.68  Aligned_cols=34  Identities=35%  Similarity=0.649  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..+|+|+|+|++|...++.+...|-.+++.+|.+
T Consensus       172 g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~  205 (345)
T 3jv7_A          172 GSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD  205 (345)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            5689999999999999888888877889888754

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=94.11  E-value=0.14  Score=40.45  Aligned_cols=36  Identities=14%  Similarity=0.238  Sum_probs=28.2

Q ss_pred             HHhcCcEEEEcC----ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGV----GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~----GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      -++..+|+|||+    |.+|..++++|.+.|. ++..+|+.
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~-~V~~vnp~   50 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDLLSKGF-EVLPVNPN   50 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHHHHCCC-EEEEeCCC
Confidence            456789999999    9999999999999998 45555543

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=94.11  E-value=0.14  Score=47.32  Aligned_cols=30  Identities=17%  Similarity=0.299  Sum_probs=26.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHH-hCCCeEEEEe
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTR-CGIGKLILFD   48 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD   48 (292)
                      .||+|+|+|.+|+.++..|++ .|. +++++|
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~-~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGV-EVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence            479999999999999999988 475 688888

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=94.10  E-value=0.098  Score=45.54  Aligned_cols=36  Identities=19%  Similarity=0.416  Sum_probs=27.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +-..++|+|.|+ |.+|+.+++.|...|. +++++|.+
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   45 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   45 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCc
Confidence            445678999976 8999999999999884 67776653

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=94.09  E-value=0.2  Score=45.10  Aligned_cols=34  Identities=24%  Similarity=0.459  Sum_probs=25.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHH-Hh-CCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLT-RC-GIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La-~~-Gvg~i~lvD~D   50 (292)
                      ..||.|||+|.+|...+..|. .. |+.-+.++|.+
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~   43 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD   43 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSC
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            358999999999999999988 43 44434566643

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.06  E-value=0.047  Score=49.33  Aligned_cols=92  Identities=10%  Similarity=-0.065  Sum_probs=50.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .||.|||+|+.|...+..| ..++.-..+.|.+.-                 .+++.+++..++.....+  .+      
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~-----------------~~~~~~~~~~~~~~~~~~--~~------   56 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPE-----------------EDLSKLEKAISEMNIKPK--KY------   56 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTT-----------------CCCHHHHHHHHTTTCCCE--EC------
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCch-----------------hhHHHHHHHHHHcCCCCc--cc------
Confidence            4899999999999877777 444444445554321                 123334444444332222  22      


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                       .+++++++.     .++|+|+.|+.+. ....+...|.+.|+++
T Consensus        57 -~~~~~ll~~-----~~vD~V~I~tp~~-~H~~~~~~al~aGkhV   94 (337)
T 3ip3_A           57 -NNWWEMLEK-----EKPDILVINTVFS-LNGKILLEALERKIHA   94 (337)
T ss_dssp             -SSHHHHHHH-----HCCSEEEECSSHH-HHHHHHHHHHHTTCEE
T ss_pred             -CCHHHHhcC-----CCCCEEEEeCCcc-hHHHHHHHHHHCCCcE
Confidence             345555532     4689988887543 3333444455555543

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=94.06  E-value=0.15  Score=46.91  Aligned_cols=88  Identities=10%  Similarity=0.080  Sum_probs=51.1

Q ss_pred             CcEEEEcCC-hHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVGVG-GVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG~G-glGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .||.|||+| ..|...+..|... ++.-..++|.+.                  .|++.++++.     .+.  .+    
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~------------------~~~~~~a~~~-----g~~--~~----   53 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNE------------------DVRERFGKEY-----GIP--VF----   53 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCH------------------HHHHHHHHHH-----TCC--EE----
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCH------------------HHHHHHHHHc-----CCC--eE----
Confidence            589999999 8999999999875 333444555432                  2444444433     233  22    


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                         .+++++++.     .++|+|+.++.+.. ...+...|.+.|++++
T Consensus        54 ---~~~~ell~~-----~~vD~V~i~tp~~~-H~~~~~~al~aGk~Vl   92 (387)
T 3moi_A           54 ---ATLAEMMQH-----VQMDAVYIASPHQF-HCEHVVQASEQGLHII   92 (387)
T ss_dssp             ---SSHHHHHHH-----SCCSEEEECSCGGG-HHHHHHHHHHTTCEEE
T ss_pred             ---CCHHHHHcC-----CCCCEEEEcCCcHH-HHHHHHHHHHCCCcee
Confidence               344555532     46899988886532 2333344555555443

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=94.04  E-value=0.14  Score=46.69  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=25.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D   50 (292)
                      +..||.|||+|.+|...+..|... ++.-..++|.+
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~   39 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDIL   39 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSS
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence            345899999999999999998876 33333455643

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.03  E-value=0.052  Score=48.25  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            579999999999999999999996 688888653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.03  E-value=0.14  Score=46.75  Aligned_cols=33  Identities=30%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..+|+|+|+|++|..+++.+...|..+++.+|.
T Consensus       192 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  224 (374)
T 2jhf_A          192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI  224 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            578999999999999999999999988888874

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=93.98  E-value=0.068  Score=46.45  Aligned_cols=30  Identities=30%  Similarity=0.431  Sum_probs=25.8

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +|+|.|+ |.+|+.+++.|...|. +++.+|.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            7999995 9999999999999884 6777665

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=93.97  E-value=0.08  Score=45.25  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.+++...                 ..+.+...+.+.+..  .++..+..
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~   64 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNR-----------------KEEAEETVYEIQSNG--GSAFSIGA   64 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-----------------SHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCc-----------------hHHHHHHHHHHHhcC--CceEEEec
Confidence            56788888876 7999999999999996 455544321                 234555555665554  35666777


Q ss_pred             cccchhhHHHHHhcCCCC------CCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLT------EGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~------~~~~DlVv~a~  122 (292)
                      ++++.+.....++.....      ..+.|++|.+.
T Consensus        65 D~~~~~~~~~~~~~~~~~~~~~~~~~~id~lv~nA   99 (255)
T 3icc_A           65 NLESLHGVEALYSSLDNELQNRTGSTKFDILINNA   99 (255)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CcCCHHHHHHHHHHHHHHhcccccCCcccEEEECC
Confidence            777655555443221100      12489999875

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.96  E-value=0.15  Score=42.85  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=27.3

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++|+|.|+ |++|.++++.|++.|. ++.++|.+
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~   35 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLR   35 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESS
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccC
Confidence            568899975 7999999999999995 57777754

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=93.95  E-value=0.56  Score=41.66  Aligned_cols=101  Identities=18%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++|+|.| .|.+|+.+++.|+..|- -+++++|...-.. +.                   +.+.++. .-.++.+..++
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~-------------------~~~~~~~-~~~~~~~~~Dl   63 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG-NK-------------------ANLEAIL-GDRVELVVGDI   63 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC-CG-------------------GGTGGGC-SSSEEEEECCT
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCC-Ch-------------------hHHhhhc-cCCeEEEECCC
Confidence            5799998 59999999999999943 3677777532100 00                   0111111 12455666777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHH-----------------HHHHHHHHHHHhCCceeecC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFE-----------------ARMTINMACNQLGQTWFESG  146 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~-----------------~r~~in~~~~~~~~p~i~~~  146 (292)
                      ++.+.+.+.+       .++|+||.+.....                 ....+-++|.+.+..+|+.+
T Consensus        64 ~d~~~~~~~~-------~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~S  124 (348)
T 1oc2_A           64 ADAELVDKLA-------AKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS  124 (348)
T ss_dssp             TCHHHHHHHH-------TTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCHHHHHHHh-------hcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence            7766776666       57899998864321                 12345567777777666553

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=93.95  E-value=0.2  Score=44.91  Aligned_cols=36  Identities=14%  Similarity=-0.016  Sum_probs=26.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhC-CCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCG-IGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~G-vg~i~lvD~D~   51 (292)
                      +..||.|||+|.+|...+..|...+ +.-..+.|.+.
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~   40 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTL   40 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCS
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            3468999999999999999998875 33334556543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.93  E-value=0.14  Score=47.62  Aligned_cols=31  Identities=23%  Similarity=0.308  Sum_probs=27.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ||.|||+|.+|..+|..|++ | .+++++|.+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G-~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-Q-NEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T-SEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-C-CEEEEEECCH
Confidence            79999999999999999999 8 5799998764

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=93.92  E-value=0.2  Score=43.01  Aligned_cols=39  Identities=15%  Similarity=0.306  Sum_probs=28.8

Q ss_pred             HHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          12 YEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        12 q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+..+++|+|.|+ |++|.++++.|++.|.. +.++|.+.
T Consensus        17 ~~~~m~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~   56 (251)
T 3orf_A           17 RGSHMSKNILVLGGSGALGAEVVKFFKSKSWN-TISIDFRE   56 (251)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             cccccCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            33445778999986 68999999999999964 88888653

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=93.92  E-value=0.096  Score=46.13  Aligned_cols=32  Identities=16%  Similarity=0.251  Sum_probs=27.0

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +++|+|.|+ |.+|+.+++.|+..| -+++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   34 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGF   34 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEcc
Confidence            468999998 999999999999998 46777763

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=93.89  E-value=0.068  Score=48.59  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=32.1

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..|+.++|.|||+|.+|..++..|...|+ ++++.|.+
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~   48 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRS   48 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCT
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECC
Confidence            56888999999999999999999999997 57776643

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.88  E-value=0.058  Score=48.45  Aligned_cols=33  Identities=24%  Similarity=0.546  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .||+|+|+|++|+.++..|++.|. +++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            589999999999999999999985 788888654

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=93.88  E-value=0.099  Score=46.64  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=28.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~   51 (292)
                      ..||.|||+|.+|...+..|.+. ++.-+.++|.+.
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~   45 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNP   45 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCH
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCH
Confidence            35899999999999999999986 454556778654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.87  E-value=0.15  Score=46.59  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.+|+|+|+|++|..+++.+...|..+++.+|.
T Consensus       191 g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~  223 (373)
T 2fzw_A          191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI  223 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            568999999999999999999999988888874

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.84  E-value=0.026  Score=47.97  Aligned_cols=32  Identities=31%  Similarity=0.435  Sum_probs=26.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEE-EeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLIL-FDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~l-vD~   49 (292)
                      -.||.|||+|.+|+.++..|++.|. ++++ +|.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r   55 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQI-PAIIANSR   55 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTC-CEEEECTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            3689999999999999999999997 4554 553

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=93.81  E-value=0.078  Score=45.26  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=25.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      |++++|+|.|+ ||+|.++++.|++ | .++.++|.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g-~~v~~~~r   36 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-D-HIVYALGR   36 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-T-SEEEEEES
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-C-CeEEEEeC
Confidence            56788999976 7899999999998 6 46777764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.79  E-value=0.18  Score=46.04  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..+|+|+|+|++|..+++.+...|..+++.+|.
T Consensus       193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  225 (374)
T 1cdo_A          193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL  225 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            578999999999999999998999988888874

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=93.78  E-value=0.13  Score=44.54  Aligned_cols=93  Identities=14%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHh--CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRC--GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~--Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +|+|.|+ |.+|+.+++.|...  |. +++++|.+.-                  |..    .+..  +.  ++.+..++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~------------------~~~----~~~~--~~--~~~~~~D~   53 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPA------------------KAQ----ALAA--QG--ITVRQADY   53 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTT------------------TCH----HHHH--TT--CEEEECCT
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChH------------------hhh----hhhc--CC--CeEEEcCC
Confidence            5899997 99999999999987  74 5777764320                  001    1111  22  34455666


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCC-----HHHHHHHHHHHHHhCCc-eeec
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDN-----FEARMTINMACNQLGQT-WFES  145 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-----~~~r~~in~~~~~~~~p-~i~~  145 (292)
                      ++.+.+.+.+       .++|+||.+...     ......+-++|.+.++. +++.
T Consensus        54 ~d~~~~~~~~-------~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~  102 (286)
T 2zcu_A           54 GDEAALTSAL-------QGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYT  102 (286)
T ss_dssp             TCHHHHHHHT-------TTCSEEEECC--------CHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHH-------hCCCEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            6656666654       578999877643     22334556677777753 4443

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=93.78  E-value=0.13  Score=45.95  Aligned_cols=36  Identities=14%  Similarity=0.270  Sum_probs=25.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEE-EEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLI-LFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~-lvD~D   50 (292)
                      ++..||.|||+|.+|..++..|.+..--++. ++|.|
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~   43 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRN   43 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            3456999999999999999999874322333 56654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=93.77  E-value=0.28  Score=41.26  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=50.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+ ||+|.++++.|++.|.. +.++|.+.                  .+.+.+   ..++.  .++..+..+++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~------------------~~~~~~---~~~~~--~~~~~~~~D~~   57 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKA-TYLTGRSE------------------SKLSTV---TNCLS--NNVGYRARDLA   57 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCH------------------HHHHHH---HHTCS--SCCCEEECCTT
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHH---HHHHh--hccCeEeecCC
Confidence            36888865 69999999999999964 88877542                  122222   22232  23445666777


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +.+.+...++...   ..+|+||.+..
T Consensus        58 ~~~~v~~~~~~~~---~~~d~lv~~Ag   81 (230)
T 3guy_A           58 SHQEVEQLFEQLD---SIPSTVVHSAG   81 (230)
T ss_dssp             CHHHHHHHHHSCS---SCCSEEEECCC
T ss_pred             CHHHHHHHHHHHh---hcCCEEEEeCC
Confidence            7777777765433   34589987763

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.77  E-value=0.053  Score=48.09  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .||+|+|+|++|+.++..|++.|. +++++|.+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            589999999999999999999995 78898875

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=93.74  E-value=0.25  Score=45.18  Aligned_cols=92  Identities=21%  Similarity=0.324  Sum_probs=50.8

Q ss_pred             cCChHHHHH----HHhcCcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeCCcccccCCCCCccCcCCCCChHHH
Q psy2302           5 RMGIVENYE----HIRTLTVIVVGV-GGVGSVTAEMLTRCGI-G-----KLILFDYDKVELANMNRLFFQPDQCGLSKVE   73 (292)
Q Consensus         5 ~~G~~~~q~----~L~~~~V~vvG~-GglGs~va~~La~~Gv-g-----~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~   73 (292)
                      -||-.++|.    .+...||+|+|+ |++|..++..|+...+ +     +|.|+|-..                ++.+++
T Consensus         8 ~~~~~~~~~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~----------------~~~~~~   71 (345)
T 4h7p_A            8 HMGTLEAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEP----------------ALKALA   71 (345)
T ss_dssp             --------------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG----------------GHHHHH
T ss_pred             ccccccccccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCC----------------ccccch
Confidence            355555543    344459999997 9999999999998664 4     788888321                123444


Q ss_pred             HHHHHHHhhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          74 AARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        74 a~~~~l~~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      -.+--|+..........+.   .  .+..+-+       .+.|+||.+..-
T Consensus        72 Gva~DL~~~~~~~~~~~~~---~--~~~~~a~-------~~advVvi~aG~  110 (345)
T 4h7p_A           72 GVEAELEDCAFPLLDKVVV---T--ADPRVAF-------DGVAIAIMCGAF  110 (345)
T ss_dssp             HHHHHHHHTTCTTEEEEEE---E--SCHHHHT-------TTCSEEEECCCC
T ss_pred             hhhhhhhhcCccCCCcEEE---c--CChHHHh-------CCCCEEEECCCC
Confidence            4444566554333333222   1  1222222       799999988753

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=93.74  E-value=0.23  Score=44.22  Aligned_cols=77  Identities=16%  Similarity=0.250  Sum_probs=51.7

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCC------CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCe
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGI------GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVT   87 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gv------g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~   87 (292)
                      +++++|+|.| .|.+|+.+++.|+..|.      .+++++|.+.-.   ..       .                ...-+
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~---~~-------~----------------~~~~~   65 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPE---AP-------A----------------GFSGA   65 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCC---CC-------T----------------TCCSE
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCc---cc-------c----------------ccCCc
Confidence            4567899998 59999999999999983      577877753210   00       0                01234


Q ss_pred             EEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          88 IEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        88 v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++.+..++++.+.+.+.++      .++|+||.+..
T Consensus        66 ~~~~~~Dl~d~~~~~~~~~------~~~d~vih~A~   95 (342)
T 2hrz_A           66 VDARAADLSAPGEAEKLVE------ARPDVIFHLAA   95 (342)
T ss_dssp             EEEEECCTTSTTHHHHHHH------TCCSEEEECCC
T ss_pred             eeEEEcCCCCHHHHHHHHh------cCCCEEEECCc
Confidence            5666677776566666553      37899998764

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=93.74  E-value=0.033  Score=49.35  Aligned_cols=34  Identities=18%  Similarity=0.416  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++++|+|+|+|++|..++..|++.|  +++++|.+
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~  159 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRT  159 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECC
Confidence            56789999999999999999999999  89987643

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=93.69  E-value=0.32  Score=43.35  Aligned_cols=32  Identities=28%  Similarity=0.441  Sum_probs=27.9

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      .||+|+| +|.+|+.++..|+..|. .++.|+|-
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di   34 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcC
Confidence            3799999 99999999999998875 46999885

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=93.68  E-value=0.15  Score=44.94  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=25.6

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      .+++|+|.|+ |.+|+.+++.|...|. ++++++
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~~~   34 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLR   34 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTT-EEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEe
Confidence            3568999985 9999999999999885 355544

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.68  E-value=0.054  Score=48.44  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .||+|+|+|++|+.++..|++.|. +++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCc
Confidence            589999999999999999999995 688887654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=93.67  E-value=0.06  Score=52.08  Aligned_cols=46  Identities=22%  Similarity=0.381  Sum_probs=32.5

Q ss_pred             CChHHHHHHHh--cCcEEEEcCChHHHHHHHHHHH---hCCCeEEEEeCCcc
Q psy2302           6 MGIVENYEHIR--TLTVIVVGVGGVGSVTAEMLTR---CGIGKLILFDYDKV   52 (292)
Q Consensus         6 ~G~~~~q~~L~--~~~V~vvG~GglGs~va~~La~---~Gvg~i~lvD~D~V   52 (292)
                      -|+++...++.  ..+|+|||.|..|..+|..|++   .|+ +++|+|.+.+
T Consensus        12 ~~~~~~~~~M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   62 (550)
T 2e4g_A           12 SGLVPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPDI   62 (550)
T ss_dssp             ---------CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCCC
T ss_pred             CCcccCCcccCCCCCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCCC
Confidence            35666666753  5689999999999999999999   887 7999998654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.66  E-value=0.38  Score=43.68  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=28.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.+|+|+|+|++|..+++.+...|. +++.+|.
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~  221 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATGA-EVIVTSS  221 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEec
Confidence            5789999999999999999999998 6777774

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=93.66  E-value=0.24  Score=44.53  Aligned_cols=89  Identities=17%  Similarity=0.109  Sum_probs=50.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC---eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG---KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg---~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .||.|||+|.+|...+..|...+-.   -..+.|.+                  ..|++.++++..    -.++  +   
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~------------------~~~a~~~a~~~~----~~~~--~---   55 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARD------------------LSRAKEFAQKHD----IPKA--Y---   55 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSS------------------HHHHHHHHHHHT----CSCE--E---
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCC------------------HHHHHHHHHHcC----CCcc--c---
Confidence            4899999999999999988765422   23344432                  234444444321    1111  1   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                          .+++++++.     .++|+|+.|+.+.. ...+...|.+.|++++
T Consensus        56 ----~~~~~ll~~-----~~vD~V~i~tp~~~-H~~~~~~al~~GkhVl   94 (334)
T 3ohs_X           56 ----GSYEELAKD-----PNVEVAYVGTQHPQ-HKAAVMLCLAAGKAVL   94 (334)
T ss_dssp             ----SSHHHHHHC-----TTCCEEEECCCGGG-HHHHHHHHHHTTCEEE
T ss_pred             ----CCHHHHhcC-----CCCCEEEECCCcHH-HHHHHHHHHhcCCEEE
Confidence                345555542     46899998886542 3333444555565443

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.64  E-value=0.086  Score=44.73  Aligned_cols=35  Identities=29%  Similarity=0.454  Sum_probs=28.7

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++++|+|.|+ |++|.++++.|++.|. ++.++|.+.
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~   37 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSA   37 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCc
Confidence            4567888875 7999999999999996 688887653

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=93.63  E-value=0.045  Score=46.58  Aligned_cols=87  Identities=20%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ..+|+|+|+|.+|..++..+... |+.-+.++|.|.-.             +|+            .-..+.+..     
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k-------------~g~------------~i~gv~V~~-----  129 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK-------------VGR------------PVRGGVIEH-----  129 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT-------------TTC------------EETTEEEEE-----
T ss_pred             CCEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHH-------------Hhh------------hhcCCeeec-----
Confidence            35899999999999999863322 55566778865411             111            001233321     


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                        .+++.++++      ++.|.|+.|+.+.... .+.+.|.+.|+..
T Consensus       130 --~~dl~ell~------~~ID~ViIA~Ps~~~~-ei~~~l~~aGi~~  167 (211)
T 2dt5_A          130 --VDLLPQRVP------GRIEIALLTVPREAAQ-KAADLLVAAGIKG  167 (211)
T ss_dssp             --GGGHHHHST------TTCCEEEECSCHHHHH-HHHHHHHHHTCCE
T ss_pred             --HHhHHHHHH------cCCCEEEEeCCchhHH-HHHHHHHHcCCCE
Confidence              145666652      2689999999876543 6677778888753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.61  E-value=0.069  Score=46.57  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=29.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            79999999999999999999996 799988654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=93.61  E-value=0.061  Score=49.62  Aligned_cols=36  Identities=31%  Similarity=0.476  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|++++|+|+|+|.+|..+|+.|...|. ++++.|.|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~  205 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVN  205 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            3678999999999999999999999998 57788854

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=93.60  E-value=0.37  Score=48.89  Aligned_cols=88  Identities=17%  Similarity=0.241  Sum_probs=64.5

Q ss_pred             cCcEEEE-cCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVV-GVGGVGSVTAEMLT-RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vv-G~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ++.++|. |.||+|..+|+.|+ +.|.+++.+++.+.-               ...+++.+.+.|++.  ..++..+..+
T Consensus       530 ~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~---------------~~~~~~~~~~~l~~~--G~~v~~~~~D  592 (795)
T 3slk_A          530 AGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGP---------------AASGAAELVAQLTAY--GAEVSLQACD  592 (795)
T ss_dssp             TSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGG---------------GSTTHHHHHHHHHHT--TCEEEEEECC
T ss_pred             ccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCcc---------------chHHHHHHHHHHHhc--CCcEEEEEee
Confidence            4556677 56899999999999 799999999775421               122444555556554  5788888999


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +++.+.+...++.....+ +.|+||.+.
T Consensus       593 vsd~~~v~~~~~~~~~~~-~id~lVnnA  619 (795)
T 3slk_A          593 VADRETLAKVLASIPDEH-PLTAVVHAA  619 (795)
T ss_dssp             TTCHHHHHHHHHTSCTTS-CEEEEEECC
T ss_pred             cCCHHHHHHHHHHHHHhC-CCEEEEECC
Confidence            998888888887655444 789999875

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.57  E-value=0.31  Score=44.02  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=28.4

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ...+|+|+|+|++|..+++.+...|.. ++.+|.
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~  200 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTAR  200 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcC
Confidence            357899999999999999988889986 777774

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=93.56  E-value=0.73  Score=41.78  Aligned_cols=92  Identities=17%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCC---Ce---EE
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLT-RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPD---VT---IE   89 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~---v~---v~   89 (292)
                      ++|+|.|+ |.+|+++++.|+ ..|. +++++|...-..   ..    ....  ...+.+.+.+.++...   -.   ++
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~---~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSLVGTH---GK----SDHV--ETRENVARKLQQSDGPKPPWADRYAA   72 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECCTTTT---TC----CTTS--CCHHHHHHHHHHSCSSCCTTTTCCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecCCccc---cc----cccc--chHHHHHHHHHHhhccccccCCceEE
Confidence            57999985 999999999999 8884 677777532110   00    0000  0022233333443221   12   55


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+..++++.+.+.+.++.    +..+|+||.+..
T Consensus        73 ~~~~Dl~d~~~~~~~~~~----~~~~d~vih~A~  102 (397)
T 1gy8_A           73 LEVGDVRNEDFLNGVFTR----HGPIDAVVHMCA  102 (397)
T ss_dssp             EEESCTTCHHHHHHHHHH----SCCCCEEEECCC
T ss_pred             EEECCCCCHHHHHHHHHh----cCCCCEEEECCC
Confidence            667777776667666642    123999998864

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.54  E-value=0.25  Score=44.47  Aligned_cols=35  Identities=23%  Similarity=0.498  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|+|+|++|..+++.+...|.++++.+|..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~  198 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPN  198 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46789999999999999999999999788888753

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=93.51  E-value=0.27  Score=44.00  Aligned_cols=34  Identities=9%  Similarity=0.079  Sum_probs=28.5

Q ss_pred             CcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .||.|||+| .+|...+..|...++.-..++|.+.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~   38 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPAT   38 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCH
Confidence            589999995 5999999999999887777887653

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=93.50  E-value=0.15  Score=43.63  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=29.2

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      |++++|+|.|+ |++|.++++.|++.|. ++.++|.+
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~   40 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQA   40 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            46778999975 7999999999999996 67777754

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=93.49  E-value=0.17  Score=46.79  Aligned_cols=81  Identities=16%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCC-Ce---EEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCCeEEE
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGI-GK---LILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDVTIEV   90 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gv-g~---i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v~v~~   90 (292)
                      ..||.|+| +|.+|..++..|+..++ ++   +.|+|-|.              +.-+.|++..+--|+... |...   
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~--------------~~~~~~~~G~amDL~h~~~p~~~---   94 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS--------------ERSFQALEGVAMELEDSLYPLLR---   94 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC--------------GGGHHHHHHHHHHHHTTTCTTEE---
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCc--------------cchhhhhHHHHHhHHhhhhhhcC---
Confidence            35899999 79999999999999886 55   88877543              112235555555566554 4321   


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                       ...+.. ..+.++        .+.|+||.+...
T Consensus        95 -~v~i~~-~~y~~~--------~daDvVVitag~  118 (375)
T 7mdh_A           95 -EVSIGI-DPYEVF--------EDVDWALLIGAK  118 (375)
T ss_dssp             -EEEEES-CHHHHT--------TTCSEEEECCCC
T ss_pred             -CcEEec-CCHHHh--------CCCCEEEEcCCC
Confidence             111221 334433        799999988653

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=93.47  E-value=0.15  Score=46.15  Aligned_cols=32  Identities=19%  Similarity=0.230  Sum_probs=26.8

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .||+|.| .|.+|+.++..|.+.|.-+++.+|.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~   33 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHR   33 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence            3799999 6999999999999998756666664

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=93.47  E-value=0.13  Score=46.70  Aligned_cols=33  Identities=12%  Similarity=0.199  Sum_probs=22.9

Q ss_pred             CcEEEEcCChHHH-HHHHHHHHh-CCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGS-VTAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs-~va~~La~~-Gvg~i~lvD~D   50 (292)
                      .||.|||+|.+|. ..+..|... ++.-..++|.+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~   37 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH   37 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC
Confidence            4899999999998 567767654 34333455644

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=93.46  E-value=0.41  Score=42.63  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=28.2

Q ss_pred             HHHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          12 YEHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        12 q~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ...++.++|+|.|+ |.+|+.+++.|...|. +++++|.
T Consensus        22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   59 (343)
T 2b69_A           22 HMEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   59 (343)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             ccccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            35677889999998 9999999999999985 6777765

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=93.45  E-value=0.15  Score=46.00  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=50.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..++|+|||+|..|...+..|... ++.++.++|.+                    |++.+++++++.. .+++...   
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--------------------~a~~la~~l~~~~-g~~~~~~---  175 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--------------------ASPEILERIGRRC-GVPARMA---  175 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--------------------CCHHHHHHHHHHH-TSCEEEC---
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--------------------HHHHHHHHHHHhc-CCeEEEe---
Confidence            357899999999999999999875 68999997754                    3344555555432 3444332   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                           ++++.+       .++|+||.||..
T Consensus       176 -----~~~eav-------~~aDIVi~aT~s  193 (313)
T 3hdj_A          176 -----APADIA-------AQADIVVTATRS  193 (313)
T ss_dssp             -----CHHHHH-------HHCSEEEECCCC
T ss_pred             -----CHHHHH-------hhCCEEEEccCC
Confidence                 223333       579999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	2e-32
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	2e-29
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	1e-20
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	0.003

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 2e-32
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 10/165 (6%)

Query: 9   VENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQC 67
               E + +  V ++     G+   + L   GIG   + D ++V   +     F Q    
Sbjct: 17  DHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSI 76

Query: 68  GLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEA 127
           G ++ EAA   LQ +N DV+      +   L                  +V++       
Sbjct: 77  GKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCR------FTVVVATQLPEST 130

Query: 128 RMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPP 172
            + +                    + G++++II  E       P 
Sbjct: 131 SLRLADVLWNSQIPLLICRTY--GLVGYMRIIIK-EHPVIESHPD 172

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-29
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 20/165 (12%)

Query: 20  VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR-LFFQPDQCGLSKVEAARIT 78
           V+V+G GG+G    + L   G  ++ + D D ++++N+NR   F+P   G  K E A   
Sbjct: 40  VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 99

Query: 79  LQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL 138
           L +  P+  +  H   I             +       +++  +D+  AR  IN     L
Sbjct: 100 LNDRVPNCNVVPHFNKIQ--------DFNDTFYR-QFHIIVCGLDSIIARRWINGMLISL 150

Query: 139 GQTWFESGVSENAV----------SGHIQLIIPGESACFACAPPL 173
                      + V           G+ ++I+PG +AC  C   L
Sbjct: 151 LNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLEL 195

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 86.6 bits (213), Expect = 1e-20
 Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 20/246 (8%)

Query: 1   MALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRL 60
           + L+     +  E ++   V++VG+GG+G   ++ L   G+G L L D+D V L+N+ R 
Sbjct: 15  IILRGFDF-DGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQ 73

Query: 61  -FFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVL 119
                   G  KVE+AR  L  INP + I   N  +           + +      DLVL
Sbjct: 74  TLHSDATVGQPKVESARDALTRINPHIAITPVNALLD--------DAELAALIAEHDLVL 125

Query: 120 SCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIPGESACFACAPPLIVASSI 179
            C DN   R  +N  C            +   + G I +    +     C   L      
Sbjct: 126 DCTDNVAVRNQLNAGCFAAKVPLVSG--AAIRMEGQITVFTYQD--GEPCYRCLSRLFGE 181

Query: 180 DEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEVSW--YLGYSALTDFFPKMKL 237
           +  T  + GV    +   +G++       A+K L  +G+ +    + Y A+T  F +MKL
Sbjct: 182 NALTCVEAGV----MAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKL 237

Query: 238 KPNPSC 243
             NP C
Sbjct: 238 MRNPGC 243

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYD 50
          +++VG G +G V A ++ +  +G ++LFD  
Sbjct: 6  IVLVGSGMIGGVMATLIVQKNLGDVVLFDIV 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	99.96
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.27
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.23
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.94
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.78
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.72
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.69
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.68
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.68
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.57
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.52
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.52
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.49
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.46
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.46
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.44
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.4
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.39
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.33
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.3
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.3
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.21
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.21
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.19
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.17
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.17
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.15
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.12
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.12
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.12
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.05
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.04
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.04
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.03
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.02
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.02
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.97
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.96
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.96
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.96
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.94
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.93
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.93
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.91
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.9
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.89
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.89
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.88
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.88
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.88
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.87
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.86
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.84
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.83
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.82
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.81
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.79
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.78
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.76
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.75
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.75
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.73
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.71
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.71
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.68
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.67
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.66
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.65
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.64
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.63
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.63
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.63
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.63
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.59
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.56
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.55
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.53
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.47
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.47
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.43
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.41
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.39
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.38
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.33
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.27
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.26
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.25
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	96.22
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.21
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.2
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.18
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.13
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.11
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.07
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.07
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.07
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.0
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.0
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.99
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.97
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.97
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.94
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.93
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.92
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.91
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.89
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.85
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.84
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.81
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.77
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.76
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.74
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.72
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.67
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.59
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.59
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.57
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.56
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.55
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.54
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.54
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.51
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.49
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.47
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.46
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.45
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.4
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.34
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.32
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	95.29
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.2
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.15
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.14
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.14
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.12
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.12
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.1
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.07
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.04
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.04
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.99
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.92
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.9
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	94.85
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.83
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.81
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.8
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.8
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.78
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.73
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.72
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.69
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.66
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.64
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.62
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.62
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.58
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	94.58
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.56
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.56
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.51
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.51
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.48
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.47
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.46
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	94.45
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.43
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	94.43
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.4
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.38
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.36
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.34
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	94.33
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	94.21
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.18
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.16
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.16
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.15
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	94.14
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.13
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.12
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.08
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.02
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.0
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.95
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.91
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	93.9
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	93.88
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.86
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	93.81
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.76
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	93.65
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.61
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.54
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.46
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	93.45
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.42
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.4
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.36
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.29
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.28
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	93.17
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.17
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.12
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.08
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.02
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.89
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.8
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.7
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	92.64
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.64
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.64
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.52
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.52
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.49
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.39
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.37
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.36
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.26
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	92.23
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.0
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	91.96
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	91.93
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.89
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	91.86
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.79
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.79
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.72
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.72
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.71
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.71
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.71
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	91.59
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	91.56
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.44
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.4
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.37
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	91.37
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.21
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.14
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.99
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	90.98
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	90.63
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.61
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	90.57
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	90.54
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	90.48
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	90.31
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.3
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.28
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	90.27
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.09
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.97
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.96
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	89.81
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.65
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.52
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	89.49
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.45
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.41
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.41
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	89.26
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	89.2
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.19
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	89.1
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.05
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.02
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.98
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.93
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	88.9
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.75
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	88.74
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.72
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.28
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.24
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	88.06
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.99
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	87.95
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.65
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.57
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	87.53
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	87.51
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	87.46
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	87.31
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.28
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	87.12
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.06
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	87.03
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	87.0
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.93
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.88
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	86.69
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.68
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.58
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	86.56
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	86.48
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	86.45
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.42
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	86.34
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	86.11
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	86.05
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	86.03
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.98
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.61
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	85.57
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	85.37
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	85.07
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.96
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.89
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	84.88
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	84.49
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	84.34
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	84.21
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.02
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.79
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.77
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.68
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	83.52
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	83.27
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	82.68
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	82.48
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	82.13
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	82.11
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	82.01

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-50  Score=357.07  Aligned_cols=228  Identities=29%  Similarity=0.528  Sum_probs=200.9

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHH
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQ   80 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~   80 (292)
                      .|+.+|. ++|++|+++||+|+|+||+||+++++|+++|||+|+|+|+|.||++||+||+ |+++|+|++|+++++++|+
T Consensus        16 ~l~~~g~-~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~   94 (247)
T d1jw9b_          16 ILRGFDF-DGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALT   94 (247)
T ss_dssp             TSTTTHH-HHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHH
T ss_pred             ccccCCH-HHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHH
Confidence            4677898 9999999999999999999999999999999999999999999999999986 7999999999999999999


Q ss_pred             hhCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEee-
Q psy2302          81 NINPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLI-  159 (292)
Q Consensus        81 ~~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~-  159 (292)
                      ++||+++++.+..+++. ++....+       ..+|+||+++|++.+|.++|++|+++++||+.+++.+  +.|++..+ 
T Consensus        95 ~~np~~~i~~~~~~~~~-~~~~~~~-------~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~~~~--~~g~~~~~~  164 (247)
T d1jw9b_          95 RINPHIAITPVNALLDD-AELAALI-------AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIR--MEGQITVFT  164 (247)
T ss_dssp             HHCTTSEEEEECSCCCH-HHHHHHH-------HTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEB--TEEEEEEEC
T ss_pred             Hhhcccchhhhhhhhhh-ccccccc-------cccceeeeccchhhhhhhHHHHHHHhCCCcccccccc--cccceEEEe
Confidence            99999999999999886 5555555       5899999999999999999999999999999998875  68887766 


Q ss_pred             cCCCCCccCCCCCCccCCCcchhhhhhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC--CeeEEEeCCCCCeeeeec
Q psy2302         160 IPGESACFACAPPLIVASSIDEKTLKKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV--SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       160 ~p~~t~C~~C~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~--~~~~~~d~~~~~~~~~~l  237 (292)
                      .|+.++|+.|+++.....   ..++...|    +++|+++++|+++|+|++|+|++.+.+  ++++.||..+++|+++++
T Consensus       165 ~~~~~~c~~c~~~~~~~~---~~~~~~~g----~~~p~~~~v~~~~a~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~  237 (247)
T d1jw9b_         165 YQDGEPCYRCLSRLFGEN---ALTCVEAG----VMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKL  237 (247)
T ss_dssp             CCTTCCCTHHHHTTCCC----------CC----BCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTEEEEEEC
T ss_pred             ecCCcccccccccccccc---cCCcccCC----cccccchhHHHHHHHHHHHHHhcCCCcCcCcEEEEECCCCEEEEEec
Confidence            477899999997654322   22333444    488999999999999999999998875  689999999999999999


Q ss_pred             cCCCCCCCcccc
Q psy2302         238 KPNPSCDDSYCV  249 (292)
Q Consensus       238 ~~~p~C~~~~C~  249 (292)
                      .++|+||  .||
T Consensus       238 ~~~~~C~--vCG  247 (247)
T d1jw9b_         238 MRNPGCE--VCG  247 (247)
T ss_dssp             CCCTTCT--TTC
T ss_pred             CcCcCCC--CCC
Confidence            9999999  897

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-43  Score=334.24  Aligned_cols=233  Identities=21%  Similarity=0.316  Sum_probs=194.5

Q ss_pred             ChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCC
Q psy2302           7 GIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPD   85 (292)
Q Consensus         7 G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~   85 (292)
                      |....|.+|+++||+|||+||+||+++++|+++|||+|+|+|+|+|+.+||+||| |+.+|+|++|+++++++|+++||+
T Consensus        27 ~~e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~  106 (426)
T d1yovb1          27 STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN  106 (426)
T ss_dssp             CSSHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCC
Confidence            4446689999999999999999999999999999999999999999999999987 799999999999999999999999


Q ss_pred             CeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHH------------HhCCceeecCcccceeE
Q psy2302          86 VTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACN------------QLGQTWFESGVSENAVS  153 (292)
Q Consensus        86 v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~------------~~~~p~i~~~~~~~~~~  153 (292)
                      ++++.+..++.+ .+ .+++       .++|+||+|+||+.+|.++|+.|.            +.++|+|++++.+  +.
T Consensus       107 v~i~~~~~~i~~-~~-~~~~-------~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G--~~  175 (426)
T d1yovb1         107 CNVVPHFNKIQD-FN-DTFY-------RQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEG--FK  175 (426)
T ss_dssp             CCCEEECSCGGG-BC-HHHH-------TTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEET--TE
T ss_pred             CceEeeeccccc-hH-HHHH-------HhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEee--eE
Confidence            999999998875 33 2444       789999999999999999999997            4578999999875  89


Q ss_pred             EEEEeecCCCCCccCCCCCCccCCCc---------------------------------------c-hhhh---------
Q psy2302         154 GHIQLIIPGESACFACAPPLIVASSI---------------------------------------D-EKTL---------  184 (292)
Q Consensus       154 G~v~~~~p~~t~C~~C~~~~~~~~~~---------------------------------------~-~~~~---------  184 (292)
                      |++.++.|+.|+||+|.++..++...                                       + ...+         
T Consensus       176 G~~~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~~~~~~~~~~~~~~d~dd~~~i~~i~~~a~~  255 (426)
T d1yovb1         176 GNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLE  255 (426)
T ss_dssp             EEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTSTTCCCCTTCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhcccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999998653321110                                       0 0000         


Q ss_pred             ----------------hhcCccCCCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCC-CeeeeeccCCCCCCCc
Q psy2302         185 ----------------KKDGVCAASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTD-FFPKMKLKPNPSCDDS  246 (292)
Q Consensus       185 ----------------~~~~~~~~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~-~~~~~~l~~~p~C~~~  246 (292)
                                      .-.+...|.++++++++|+++++|++|+|++.+.+ .+++.|+.... .+.++++.|+|+|+  
T Consensus       256 ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~~p~~n~~~~~~~~~~~~~~~~~~k~~~C~--  333 (426)
T d1yovb1         256 RASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCP--  333 (426)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSCEEEEECCCCCTTCT--
T ss_pred             HHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCCccccceEEEecCCCceEeeeeccCCCCCC--
Confidence                            00122346788999999999999999999998887 56666666554 46788999999999  


Q ss_pred             cccchh
Q psy2302         247 YCVQRQ  252 (292)
Q Consensus       247 ~C~~~~  252 (292)
                      +|+...
T Consensus       334 vC~~~~  339 (426)
T d1yovb1         334 ACSQLP  339 (426)
T ss_dssp             TTCSSC
T ss_pred             eeCCce
Confidence            899854

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.8e-30  Score=246.42  Aligned_cols=151  Identities=18%  Similarity=0.163  Sum_probs=135.2

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQN   81 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~   81 (292)
                      |+.||. ++|++|+++||+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||| |+++|+|++|+++++++|++
T Consensus        12 lrlwG~-~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~   90 (529)
T d1yova1          12 LRLWGD-HGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQE   90 (529)
T ss_dssp             HHHHHH-HHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHT
T ss_pred             HHhhhH-HHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHH
Confidence            466999 9999999999999999999999999999999999999999999999999987 68999999999999999999


Q ss_pred             hCCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCcccceeEEEEEeecC
Q psy2302          82 INPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGVSENAVSGHIQLIIP  161 (292)
Q Consensus        82 ~np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~~~~~~~G~v~~~~p  161 (292)
                      +||+|+++.+...+      .+++.+...++.++|+||+|.++...+..|+++|+++++|+|.+++.|  +.|++.+..|
T Consensus        91 lNp~v~i~~~~~~~------~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G--~~G~v~~~~~  162 (529)
T d1yova1          91 LNSDVSGSFVEESP------ENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYG--LVGYMRIIIK  162 (529)
T ss_dssp             TCTTSBCCEESSCH------HHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEET--TEEEEEEECS
T ss_pred             hCCCCcEEEEcCCc------hhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccC--CEEEEEEEeC
Confidence            99999998877543      223333334557899999999999999999999999999999998875  8999988876


Q ss_pred             C
Q psy2302         162 G  162 (292)
Q Consensus       162 ~  162 (292)
                      .
T Consensus       163 ~  163 (529)
T d1yova1         163 E  163 (529)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.27  E-value=3.2e-06  Score=63.40  Aligned_cols=92  Identities=13%  Similarity=0.143  Sum_probs=68.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|||.|.+|..-++.|...|. ++++++++.-+                    ...+.+.    .-+++....
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~--------------------~~~~~~~----~~~i~~~~~   63 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP--------------------QFTVWAN----EGMLTLVEG   63 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH--------------------HHHHHHT----TTSCEEEES
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCh--------------------HHHHHHh----cCCceeecc
Confidence            5789999999999999999999999995 68998865421                    1111111    223444444


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                      .... +++           .++++|+.++++.+.-..+.+.|+++++|.
T Consensus        64 ~~~~-~dl-----------~~~~lv~~at~d~~~n~~i~~~a~~~~ilV  100 (113)
T d1pjqa1          64 PFDE-TLL-----------DSCWLAIAATDDDTVNQRVSDAAESRRIFC  100 (113)
T ss_dssp             SCCG-GGG-----------TTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCH-HHh-----------CCCcEEeecCCCHHHHHHHHHHHHHcCCEE
Confidence            4433 222           689999999999999889999999999975

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=6.6e-07  Score=73.01  Aligned_cols=91  Identities=16%  Similarity=0.267  Sum_probs=63.2

Q ss_pred             cccCChHHHHHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302           3 LKRMGIVENYEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus         3 l~~~G~~~~q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      |++.|+     .+++++|+|+|+||.|..++..|...|+.+|++++.+.   ++            ..|+..+++++...
T Consensus         9 l~~~~~-----~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~---~~------------~~~~~~l~~~~~~~   68 (182)
T d1vi2a1           9 IKESGF-----DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD---EF------------FDKALAFAQRVNEN   68 (182)
T ss_dssp             HHHTTC-----CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS---TT------------HHHHHHHHHHHHHH
T ss_pred             HHHcCC-----CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch---HH------------HHHHHHHHHHHHhh
Confidence            444555     67899999999999999999999999999999988542   11            12555666777666


Q ss_pred             CCCCeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          83 NPDVTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        83 np~v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+.. +...  .+.+.+.+.+.+       .++|+||+||.
T Consensus        69 ~~~~-~~~~--~~~~~~~~~~~~-------~~~diiIN~Tp   99 (182)
T d1vi2a1          69 TDCV-VTVT--DLADQQAFAEAL-------ASADILTNGTK   99 (182)
T ss_dssp             SSCE-EEEE--ETTCHHHHHHHH-------HTCSEEEECSS
T ss_pred             cCcc-eEee--ecccccchhhhh-------cccceeccccC
Confidence            5432 2222  222224444443       58999999985

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.94  E-value=3.2e-05  Score=59.14  Aligned_cols=92  Identities=21%  Similarity=0.300  Sum_probs=64.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      .||+|+|+|.+|..+++.|...|. .++++|.|.                  .+++    ++.+.. +  +..+..+.++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~------------------~~~~----~~~~~~-~--~~vi~Gd~~~   54 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK------------------DICK----KASAEI-D--ALVINGDCTK   54 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHH----HHHHHC-S--SEEEESCTTS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CcceecCCh------------------hhhh----hhhhhh-h--hhhccCcccc
Confidence            379999999999999999999984 589999875                  1222    222222 2  3345555555


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCc
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQT  141 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p  141 (292)
                      .+.+.+.      .++.+|.++.++++.+.-..+...+++.+.+
T Consensus        55 ~~~l~~~------~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~   92 (132)
T d1lssa_          55 IKTLEDA------GIEDADMYIAVTGKEEVNLMSSLLAKSYGIN   92 (132)
T ss_dssp             HHHHHHT------TTTTCSEEEECCSCHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhhc------ChhhhhhhcccCCcHHHHHHHHHHHHHcCCc
Confidence            3444332      2378999999999988877777777777665

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.7e-05  Score=65.69  Aligned_cols=91  Identities=16%  Similarity=0.211  Sum_probs=74.6

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      ++|+++.|+|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .|.+.+++.+++..+..++..+
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~------------------~~l~~~~~~l~~~~~~~~~~~~   66 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTV------------------GNIEELAAECKSAGYPGTLIPY   66 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTTCSSEEEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcCCCceEEEE
Confidence            5799999999965 5999999999999997 688877532                  4788888999998888899999


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++++.++.+++++.....+.+.|++|.+.
T Consensus        67 ~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnA   97 (257)
T d1xg5a_          67 RCDLSNEEDILSMFSAIRSQHSGVDICINNA   97 (257)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHhcCCCCEEEecc
Confidence            9999988887776655444457899999876

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.72  E-value=0.00014  Score=57.34  Aligned_cols=96  Identities=20%  Similarity=0.142  Sum_probs=63.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +++|+|+|+|.+|..+|++|+..|. +++++|.+.                  .|++.    +.+..+...+.  .....
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~------------------~~a~~----l~~~~~~~~~~--~~~~~   56 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL------------------ESAKK----LSAGVQHSTPI--SLDVN   56 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH------------------HHHHH----HHTTCTTEEEE--ECCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh------------------HHHHH----HHhcccccccc--ccccc
Confidence            6899999999999999999999998 799999655                  23333    33334433332  23333


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      ......+.+       ...|+++.++..... ..+...+.+.+..++..
T Consensus        57 ~~~~~~~~i-------~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~   97 (182)
T d1e5qa1          57 DDAALDAEV-------AKHDLVISLIPYTFH-ATVIKSAIRQKKHVVTT   97 (182)
T ss_dssp             CHHHHHHHH-------TTSSEEEECSCGGGH-HHHHHHHHHHTCEEECS
T ss_pred             chhhhHhhh-------hccceeEeeccchhh-hHHHHHHHhhccceeec
Confidence            334444554       578888887765433 44556777777766654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.5e-05  Score=63.82  Aligned_cols=75  Identities=13%  Similarity=0.224  Sum_probs=52.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++|+|+|+||.+.+++..|...|+ +|+|+..+.                  .|++.+++.+.+..+   ++... 
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~------------------~ka~~l~~~~~~~~~---~~~~~-   71 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTV------------------SRAEELAKLFAHTGS---IQALS-   71 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH------------------HHHHHHHHHTGGGSS---EEECC-
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchH------------------HHHHHHHHHHhhccc---ccccc-
Confidence            5678999999999999999999999998 588864322                  477777776665542   22221 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                       .   ++.         ....+|+||+||.-
T Consensus        72 -~---~~~---------~~~~~dliIN~Tp~   89 (170)
T d1nyta1          72 -M---DEL---------EGHEFDLIINATSS   89 (170)
T ss_dssp             -S---GGG---------TTCCCSEEEECCSC
T ss_pred             -c---ccc---------cccccceeeccccc
Confidence             1   111         11579999999854

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.68  E-value=5.7e-05  Score=59.93  Aligned_cols=88  Identities=17%  Similarity=0.192  Sum_probs=61.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .|++++|+|+|+|.+|..++++|...|+++++++...                  ..|++.+++.+   +  .++..   
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt------------------~~ka~~l~~~~---~--~~~~~---   74 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT------------------YERAVELARDL---G--GEAVR---   74 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS------------------HHHHHHHHHHH---T--CEECC---
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc------------------HHHHHHHHHhh---h--ccccc---
Confidence            4689999999999999999999999999999995422                  23666665543   2  22211   


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHH---HHHHHHHHHHHh
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE---ARMTINMACNQL  138 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~---~r~~in~~~~~~  138 (292)
                          .+++.+.+       .++|+||.||..+.   .+..+.....++
T Consensus        75 ----~~~~~~~l-------~~~Divi~atss~~~ii~~~~i~~~~~~r  111 (159)
T d1gpja2          75 ----FDELVDHL-------ARSDVVVSATAAPHPVIHVDDVREALRKR  111 (159)
T ss_dssp             ----GGGHHHHH-------HTCSEEEECCSSSSCCBCHHHHHHHHHHC
T ss_pred             ----chhHHHHh-------ccCCEEEEecCCCCccccHhhhHHHHHhc
Confidence                14555555       68999999997643   344555555443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.68  E-value=6.4e-05  Score=59.93  Aligned_cols=91  Identities=19%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHH--HHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARIT--LQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~--l~~~np~v~v~~~~~~   94 (292)
                      ++||+|+|+|.+|+.+|..|++.|. +++++|.+.                  .|.+.+++.  .....+..+.......
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA------------------QRIKEIQDRGAIIAEGPGLAGTAHPDL   61 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH------------------HHHHHHHHHTSEEEESSSCCEEECCSE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHcCCCchhhhhhhhhhhhhh
Confidence            5899999999999999999999996 788888653                  122222221  0111233333333322


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC  135 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~  135 (292)
                      .+  .+..+.+       .++|+||.++.....+..+.++.
T Consensus        62 ~~--~~~~e~~-------~~aD~iii~v~~~~~~~~~~~i~   93 (184)
T d1bg6a2          62 LT--SDIGLAV-------KDADVILIVVPAIHHASIAANIA   93 (184)
T ss_dssp             EE--SCHHHHH-------TTCSEEEECSCGGGHHHHHHHHG
T ss_pred             hh--hhhHhHh-------cCCCEEEEEEchhHHHHHHHHhh
Confidence            22  2344444       78999999998888777766654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=0.00011  Score=58.62  Aligned_cols=34  Identities=26%  Similarity=0.507  Sum_probs=31.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++++|+|+|+||.+.+++..|...|+.+|+|++.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            6889999999999999999999999999999653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.52  E-value=0.00054  Score=51.80  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=59.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      |+++|+|+|.+|..+++.|.+.|. .++++|.|.                         ++++++..... ..+....++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~-------------------------~~~~~~~~~~~-~~~~gd~~~   53 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINE-------------------------EKVNAYASYAT-HAVIANATE   53 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCH-------------------------HHHHHTTTTCS-EEEECCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcH-------------------------HHHHHHHHhCC-cceeeeccc
Confidence            579999999999999999999996 588899877                         23333222222 223334444


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCC-HHHHHHHHHHHHHhCCceee
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDN-FEARMTINMACNQLGQTWFE  144 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~-~~~r~~in~~~~~~~~p~i~  144 (292)
                      .+.+.+.      .+.++|.||.++++ ......+.......+.+-+.
T Consensus        54 ~~~l~~a------~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~ii   95 (134)
T d2hmva1          54 ENELLSL------GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIW   95 (134)
T ss_dssp             TTHHHHH------TGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred             chhhhcc------CCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEE
Confidence            3444432      12678988887754 45555555555666655443

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.52  E-value=7.7e-05  Score=58.84  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=31.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      |+.||.|||+|.+|+.+|..|+..|+.++.|+|-
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~   39 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDV   39 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEe
Confidence            5789999999999999999999999999999983

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.49  E-value=0.00014  Score=62.03  Aligned_cols=90  Identities=23%  Similarity=0.310  Sum_probs=71.6

Q ss_pred             HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ||+++.++|.|++ |+|.++|+.|++.|. ++.+.|.+.                  .|.+.+++.+.+..+..++..+.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~------------------~~l~~~~~~~~~~~~~~~~~~~~   61 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSS------------------EGLEASKAAVLETAPDAEVLTTV   61 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhhCCCCeEEEEe
Confidence            5788888888765 899999999999996 688887432                  36777888888888888999999


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+....+++.....+.+.|++|...
T Consensus        62 ~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA   91 (258)
T d1iy8a_          62 ADVSDEAQVEAYVTATTERFGRIDGFFNNA   91 (258)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            999887887766655444457899999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.46  E-value=0.00015  Score=58.14  Aligned_cols=36  Identities=25%  Similarity=0.371  Sum_probs=32.4

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ++.+|+|+|+|++|...++.+...|..+++.+|.+.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            477899999999999999999999999999998654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=0.00019  Score=55.90  Aligned_cols=117  Identities=15%  Similarity=0.186  Sum_probs=63.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccc-cCCCCCccCcCCCCChHHHHHHHHHHhh---CCCCeEE
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVEL-ANMNRLFFQPDQCGLSKVEAARITLQNI---NPDVTIE   89 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~-sNl~R~~~~~~diG~~Ka~a~~~~l~~~---np~v~v~   89 (292)
                      +|++++|+|||.|.+|..-+..|..+|. ++++|+++.-+. .-+...... ........+.-...+.+.   .-.-.++
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFIQ-NKDQPDYREDAKRFINPNWDPTKNEIYE   87 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHCGGGC------------CEEECTTCCTTSCCCSE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHHHHhccc-hhhhhhhhhhhhhhcchhhhhccccceE
Confidence            5789999999999999999999999995 899998764321 000000000 000000000000000000   0001123


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHh
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQL  138 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~  138 (292)
                      ........ +++.    . ......+++|+.|+++.+....|.+.|.+.
T Consensus        88 ~i~~~~~~-~~l~----~-~~~~~~~~lVi~at~d~~~n~~i~~~a~~~  130 (150)
T d1kyqa1          88 YIRSDFKD-EYLD----L-ENENDAWYIIMTCIPDHPESARIYHLCKER  130 (150)
T ss_dssp             EECSSCCG-GGGC----C-SSTTCCEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             EEecccch-hhhc----c-cccccceEEEEeecCCHHHHHHHHHHHHHh
Confidence            33333332 2211    0 111257899999999999888888888875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00038  Score=55.12  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=32.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..+|+|+|+|++|...++.+...|..+++++|.+.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            57899999999999999999999999999999654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.40  E-value=0.00053  Score=54.00  Aligned_cols=98  Identities=18%  Similarity=0.164  Sum_probs=58.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .+.+|+|+|+|++|...++.+...|. +++.+|.+.                  .|.+.+    +++..+..+.. +..-
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~------------------~r~~~a----~~~ga~~~~~~-~~~~   81 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSP------------------RRLEVA----KNCGADVTLVV-DPAK   81 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHH----HHTTCSEEEEC-CTTT
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc-cccccchHH------------------HHHHHH----HHcCCcEEEec-cccc
Confidence            36789999999999999999999997 788888654                  133333    33433322221 1111


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG  139 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~  139 (292)
                      .+..+..+.+...  .-.++|+||+|+.+..+....-+.+...|
T Consensus        82 ~~~~~~~~~~~~~--~g~g~D~vid~~g~~~~~~~a~~~~~~~G  123 (170)
T d1e3ja2          82 EEESSIIERIRSA--IGDLPNVTIDCSGNEKCITIGINITRTGG  123 (170)
T ss_dssp             SCHHHHHHHHHHH--SSSCCSEEEECSCCHHHHHHHHHHSCTTC
T ss_pred             cccchhhhhhhcc--cccCCceeeecCCChHHHHHHHHHHhcCC
Confidence            1112222222211  11579999999999876544444444333

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.39  E-value=6.7e-05  Score=60.16  Aligned_cols=75  Identities=17%  Similarity=0.225  Sum_probs=54.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++|+|+|+||.+-.++..|.. |..+++|+...                  ..|++.+++++....   .+.....
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~nR~------------------~~~a~~l~~~~~~~~---~~~~~~~   72 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLANRT------------------FSKTKELAERFQPYG---NIQAVSM   72 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEESS------------------HHHHHHHHHHHGGGS---CEEEEEG
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc-cCceeeeccch------------------HHHHHHHHHHHhhcc---ccchhhh
Confidence            5788999999999999999999986 66899996432                  257888888777554   3333331


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      .-.              ....+|+||+|+.-
T Consensus        73 ~~~--------------~~~~~diiIN~tp~   89 (171)
T d1p77a1          73 DSI--------------PLQTYDLVINATSA   89 (171)
T ss_dssp             GGC--------------CCSCCSEEEECCCC
T ss_pred             ccc--------------cccccceeeecccc
Confidence            100              12689999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.33  E-value=0.00023  Score=57.84  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=61.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHH-H-HhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARIT-L-QNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~-l-~~~np~v~v~~~~~~i   95 (292)
                      +||+|+|+|..|+++|..|+..|- +++|.+.|.=.                  ++.+.+. - ..+-|++++   +.++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~------------------~~~i~~~~~n~~yl~~~~l---~~~i   65 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEE------------------VRLVNEKRENVLFLKGVQL---ASNI   65 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHH------------------HHHHHHHTBCTTTSTTCBC---CTTE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHH------------------HHHHhhccccccccccccc---cccc
Confidence            479999999999999999999885 68887755311                  1111110 0 001123321   1112


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHH-------HHHhCCceeec
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMA-------CNQLGQTWFES  145 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~-------~~~~~~p~i~~  145 (292)
                      .-..++.+.+       .+.|+||.|+.....|..+.+.       ....+.+++.+
T Consensus        66 ~~t~~l~~a~-------~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~  115 (189)
T d1n1ea2          66 TFTSDVEKAY-------NGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVC  115 (189)
T ss_dssp             EEESCHHHHH-------TTCSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEEC
T ss_pred             ccchhhhhcc-------CCCCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEE
Confidence            1114555555       6899999999888777766553       34567777764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.30  E-value=0.00012  Score=57.55  Aligned_cols=33  Identities=30%  Similarity=0.695  Sum_probs=30.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.||.|||+|.+|+.+|..|++.++.+|.|+|-
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di   35 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI   35 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            469999999999999999999999999999994

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00012  Score=52.49  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++++||+|+|+|..|-.+|+.|.+.|. ++++.|.
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~   36 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDT   36 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEES
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeC
Confidence            678999999999999999999999994 5788885

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.21  E-value=0.0006  Score=52.91  Aligned_cols=32  Identities=31%  Similarity=0.623  Sum_probs=29.3

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      +||.|+|+ |.+|+.+|..|+..|. .+|.|+|-
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi   34 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI   34 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEec
Confidence            58999996 9999999999999996 89999984

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.00012  Score=58.00  Aligned_cols=38  Identities=34%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      .+++..||.|+|+|.+|+.+|..|+..|. .+|.|+|.+
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            35677899999999999999999999997 579999854

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.19  E-value=0.00039  Score=59.09  Aligned_cols=89  Identities=19%  Similarity=0.253  Sum_probs=66.8

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      +||+++.++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .+.+.+++.+++..  .++..+
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~------------------~~l~~~~~~~~~~g--~~~~~~   59 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNR------------------EALEKAEASVREKG--VEARSY   59 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHTTT--SCEEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEE
Confidence            3789999999976 6799999999999996 588888532                  35667777777654  467778


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++++.+...++++.....+...|++|...
T Consensus        60 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnna   90 (260)
T d1zema1          60 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNA   90 (260)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCCeehhhh
Confidence            8888877777766554433457899988764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.17  E-value=0.00045  Score=53.81  Aligned_cols=34  Identities=24%  Similarity=0.498  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      .+||.|||+|.+|+.+|..|+..|. .++.|+|-+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            4799999999999999999999994 789998843

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.17  E-value=0.00082  Score=53.36  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=31.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+.+|+|+|+|++|...++.+...|..++.+.|.+.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            466899999999999999999999999999988543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00034  Score=54.56  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .||+|+|+|.+|+.++..|+++|. +++++|.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCH
Confidence            489999999999999999999996 688888755

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.12  E-value=0.00059  Score=55.12  Aligned_cols=81  Identities=16%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++|+|.| .||+|..+++.|++.|. +++++|.+.                  .|.+.+++.+.+.. .+.+  ..
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~-~~~~--~~   77 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL------------------DKAQAAADSVNKRF-KVNV--TA   77 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHHHHHHHH-TCCC--EE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch------------------HHHHHHHHHHHhcc-chhh--hh
Confidence            78999999999 69999999999999995 788888643                  35566666666543 3333  23


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .++.+.+.+.+.+       .+.|+||.++.
T Consensus        78 ~d~~~~~~~~~~~-------~~iDilin~Ag  101 (191)
T d1luaa1          78 AETADDASRAEAV-------KGAHFVFTAGA  101 (191)
T ss_dssp             EECCSHHHHHHHT-------TTCSEEEECCC
T ss_pred             hhcccHHHHHHHh-------cCcCeeeecCc
Confidence            3444556666654       78999998865

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.12  E-value=0.00041  Score=58.97  Aligned_cols=91  Identities=15%  Similarity=0.240  Sum_probs=68.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v~v~~~   91 (292)
                      ||++|.++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .|.+.+++.|++.. +..++..+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~------------------~~l~~~~~~l~~~~~~~~~~~~~   62 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHA------------------ERLEETRQQILAAGVSEQNVNSV   62 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcCCCcCceEEE
Confidence            578888888865 7999999999999996 688887543                  36667777777764 34568888


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ..++++.+..+++++.....+.+.|++|.+..
T Consensus        63 ~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          63 VADVTTDAGQDEILSTTLGKFGKLDILVNNAG   94 (264)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCCEeecccc
Confidence            88898877777666544434578999998753

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.12  E-value=0.00023  Score=55.51  Aligned_cols=76  Identities=25%  Similarity=0.378  Sum_probs=52.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh----CCCCeEEEEe
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGI-GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI----NPDVTIEVHN   92 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gv-g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~----np~v~v~~~~   92 (292)
                      ||.|+|+ |.+|+.+|..|+..|. +++.|+|-+.                +..|++..+.-|...    .+.+++....
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~----------------~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~   65 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH----------------SINKLEGLREDIYDALAGTRSDANIYVES   65 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG----------------GHHHHHHHHHHHHHHHTTSCCCCEEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh----------------hhHhhhcccccchhcccccccCCccccCC
Confidence            7999996 9999999999999995 8999999642                224666555555553    2334544333


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .     +++++        +.++|+||.+..
T Consensus        66 ~-----~d~~~--------l~~aDvVVitAG   83 (145)
T d1hyea1          66 D-----ENLRI--------IDESDVVIITSG   83 (145)
T ss_dssp             T-----TCGGG--------GTTCSEEEECCS
T ss_pred             c-----chHHH--------hccceEEEEecc
Confidence            2     22222        278999998864

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00063  Score=57.46  Aligned_cols=89  Identities=16%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .+|.++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .|.+.+++.+.+..+..++..+..+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~D   62 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNL------------------EAGVQCKAALHEQFEPQKTLFIQCD   62 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHTTTSCGGGEEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHhcCCCcEEEEEee
Confidence            4566677765 7899999999999996 688888533                  3566667777777777888889999


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++.+..+++++.....+.+.|++|....
T Consensus        63 v~~~~~v~~~~~~~~~~~G~iDilVnnAg   91 (254)
T d2gdza1          63 VADQQQLRDTFRKVVDHFGRLDILVNNAG   91 (254)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHHcCCcCeeccccc
Confidence            98877777666544434578999998763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.04  E-value=0.0022  Score=50.26  Aligned_cols=34  Identities=38%  Similarity=0.638  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      ++|+|||+|-+|+.+|+.|.+.|. .++..+|.+.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            369999999999999999999997 4788888654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.04  E-value=0.0011  Score=52.84  Aligned_cols=35  Identities=31%  Similarity=0.471  Sum_probs=32.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+|+|+|+|++|...++.+...|..+++.+|.+.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            56799999999999999999999999999999654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=0.00042  Score=55.41  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ...+|+|+|+|++|...++.+...|..+++++|.+.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccc
Confidence            457999999999999999999999999999998644

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.02  E-value=0.0019  Score=50.55  Aligned_cols=118  Identities=21%  Similarity=0.304  Sum_probs=67.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ++|.+||+|-.|+.+|++|++.|. ++.+.|.+.-....+.-  .     |.....-..+.+    ..+.+...-  +..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~--~-----~~~~~~~~~e~~----~~~diii~~--v~~   67 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVA--A-----GASAARSARDAV----QGADVVISM--LPA   67 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH--T-----TCEECSSHHHHH----TSCSEEEEC--CSC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhh--h-----hccccchhhhhc----cccCeeeec--ccc
Confidence            479999999999999999999997 67887754322111100  0     000000111211    122322111  112


Q ss_pred             hhhHHHHHhcCCC---CCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          98 LRKVGALAVQGSL---TEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        98 ~~~~~~~i~~~~~---~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      .+..++.+.....   ...+-++|||++. +++....+.+.+.++++.|+++.+++
T Consensus        68 ~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~G  123 (162)
T d3cuma2          68 SQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSG  123 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEES
T ss_pred             hhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEeccccc
Confidence            2333333322111   1245578888765 57777889999999999999987765

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.02  E-value=0.00055  Score=58.44  Aligned_cols=90  Identities=16%  Similarity=0.253  Sum_probs=68.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v~v~~~   91 (292)
                      ||++|+++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .|.+.+++.+++.. +..++..+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~------------------~~l~~~~~~l~~~~~~~~~~~~~   62 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSS------------------ERLEETRQIILKSGVSEKQVNSV   62 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHTTTCCGGGEEEE
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcCCCCCceEEE
Confidence            578888888865 6899999999999997 699988543                  36667777777664 44678888


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++++.+..+.+++.....+.+.|++|...
T Consensus        63 ~~Dvs~~~~v~~~~~~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          63 VADVTTEDGQDQIINSTLKQFGKIDVLVNNA   93 (272)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCceEEEeCC
Confidence            8888887777766654444456899999764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.97  E-value=0.0013  Score=50.93  Aligned_cols=33  Identities=33%  Similarity=0.486  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      .||.|||+|.+|+.+|..|+..|. .+|.|+|-+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            589999999999999999999997 689998843

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.96  E-value=0.00099  Score=52.58  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      .+.+.||.|||+|.+|+.+|..|+..|. .+|.|+|-+
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3567899999999999999999999996 789999854

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.96  E-value=0.0012  Score=55.81  Aligned_cols=89  Identities=22%  Similarity=0.326  Sum_probs=63.5

Q ss_pred             HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |+++.|+|.|.+ |+|.++|+.|++.|..-+.+.|.+.                   +.+ ..+.+...++..++..+..
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~   62 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE-------------------NPT-ALAELKAINPKVNITFHTY   62 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC-------------------CHH-HHHHHHHHCTTSEEEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc-------------------cHH-HHHHHHhhCCCCCEEEEEe
Confidence            678999999766 8999999999999988777755432                   112 2355778888999998888


Q ss_pred             ccc-chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NIT-LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~-~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +++ +.+.+.+.++.....+.+.|++|.+..
T Consensus        63 d~~~~~~~~~~~~~~~~~~~g~iDilvnnAG   93 (254)
T d1sbya1          63 DVTVPVAESKKLLKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEeCCC
Confidence            886 334455444333333478999998764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.96  E-value=0.0012  Score=56.72  Aligned_cols=89  Identities=10%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++|+++|.| .||+|.++|+.|++.| .++.+.|.+.                  .|.+.+.+.+.+.+ ..++..+.
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~------------------~~l~~~~~~l~~~~-g~~~~~~~   81 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKM------------------DVLKATAEQISSQT-GNKVHAIQ   81 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH------------------HHHHHHHHHHHHHH-SSCEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCH------------------HHHHHHHHHHHHhc-CCceEEEE
Confidence            68889999997 6899999999999999 5788888543                  35556666666654 34566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.....+......+.+.|++|.+.
T Consensus        82 ~D~~~~~~v~~~~~~~~~~~g~iDilvnnA  111 (294)
T d1w6ua_          82 CDVRDPDMVQNTVSELIKVAGHPNIVINNA  111 (294)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             ecccChHHHHHHhhhhhhhccccchhhhhh
Confidence            778776666654443333457899999876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.94  E-value=0.00095  Score=52.29  Aligned_cols=32  Identities=34%  Similarity=0.396  Sum_probs=27.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .||.|||+|-+|+.+|+.|.+.|. +++.+|.+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~   32 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            379999999999999999999996 57777754

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.93  E-value=0.0014  Score=50.81  Aligned_cols=35  Identities=31%  Similarity=0.478  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      ..+||.|||+|.+|+.+|..|+..|. .+|.|+|-+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            46799999999999999999999996 589999943

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.93  E-value=0.00062  Score=58.22  Aligned_cols=90  Identities=14%  Similarity=0.281  Sum_probs=67.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCCeEEEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDVTIEVH   91 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v~v~~~   91 (292)
                      ||++++++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .|.+.+++.+.+.. +..++..+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~------------------~~l~~~~~~i~~~~~~~~~~~~~   61 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNE------------------DRLEETKQQILKAGVPAEKINAV   61 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHcCCCCcceEEE
Confidence            578888888866 5899999999999997 588877532                  36677777777765 34578888


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++++.+..+++++.....+.+.|++|.+.
T Consensus        62 ~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   92 (274)
T d1xhla_          62 VADVTEASGQDDIINTTLAKFGKIDILVNNA   92 (274)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EeeCCCHHHHHHHHHHHHHHcCCceEEEeec
Confidence            8888887777766554443456889999764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.91  E-value=0.0013  Score=52.45  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+|+|+|+|++|...++.+...|..+++++|.+.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            47899999999999999999999999999988654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.90  E-value=0.0006  Score=54.42  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=51.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++++++|+|+|+||.+..++..|.  +.++|+|+..+.                  .|++.+.+.+....+.-.+.... 
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~--~~~~i~I~nR~~------------------~ka~~l~~~~~~~~~~~~~~~~~-   73 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELA--KDNNIIIANRTV------------------EKAEALAKEIAEKLNKKFGEEVK-   73 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHT--SSSEEEEECSSH------------------HHHHHHHHHHHHHHTCCHHHHEE-
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHc--cccceeeehhhh------------------hHHHHHHHHHHHhhchhhhhhhh-
Confidence            579999999999999999998885  567999855322                  47777777776654322110000 


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                       +   .++       ......+|+||+|+.-
T Consensus        74 -~---~~~-------~~~~~~~dliIn~tp~   93 (177)
T d1nvta1          74 -F---SGL-------DVDLDGVDIIINATPI   93 (177)
T ss_dssp             -E---ECT-------TCCCTTCCEEEECSCT
T ss_pred             -h---hhh-------hhccchhhhhccCCcc
Confidence             0   011       0112689999999864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.89  E-value=0.00049  Score=57.87  Aligned_cols=83  Identities=18%  Similarity=0.274  Sum_probs=56.0

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++++|.|+ +|+|.++|+.|+..|. ++.+.|.+.                  .+.+.+++   +    ...+.+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~------------------~~l~~~~~---~----~~~~~~~   55 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEE------------------GPLREAAE---A----VGAHPVV   55 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHH---T----TTCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHH---H----cCCeEEE
Confidence            478889999975 6899999999999997 588887432                  12222222   2    2345667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.++++++.....+.+.|++|.+.
T Consensus        56 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA   85 (242)
T d1ulsa_          56 MDVADPASVERGFAEALAHLGRLDGVVHYA   85 (242)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             EecCCHHHHHHHHHHHHHhcCCceEEEECC
Confidence            777776776665544333446789888764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.89  E-value=0.0048  Score=48.56  Aligned_cols=35  Identities=31%  Similarity=0.416  Sum_probs=31.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+|+|+|+||+|...+..+...|..++..+|.+.
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            46899999999999999999999999999988654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0014  Score=56.66  Aligned_cols=90  Identities=20%  Similarity=0.240  Sum_probs=68.2

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC---CCeEE
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP---DVTIE   89 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np---~v~v~   89 (292)
                      +|+++.++|.|+ +|+|.++|+.|++.|. ++.+.|.+                  ..|.+.+++.|....+   ..++.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~------------------~~~l~~~~~el~~~~~~~~~~~~~   69 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK------------------LERLKSAADELQANLPPTKQARVI   69 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC------------------HHHHHHHHHHHHHTSCTTCCCCEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC------------------HHHHHHHHHHHHhhhccccCceEE
Confidence            588999999965 5799999999999997 68888743                  2466677777766433   46788


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .+..++++.+.+.++++.....+.+.|++|.+.
T Consensus        70 ~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          70 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEeccCCCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence            888999887777766654444456899999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.88  E-value=0.0012  Score=55.64  Aligned_cols=88  Identities=11%  Similarity=0.138  Sum_probs=65.8

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++|.++|.|+ +|+|.++|+.|++.|. ++.++|.+.                  .+.+.+++.+++...  ++..+.
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~------------------~~l~~~~~~l~~~g~--~~~~~~   65 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQ------------------KSCDSVVDEIKSFGY--ESSGYA   65 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSH------------------HHHHHHHHHHHTTTC--CEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCH------------------HHHHHHHHHHHhcCC--cEEEEE
Confidence            356778888876 6899999999999996 688887532                  466777777877654  567778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+..+++.....+.+.|++|...
T Consensus        66 ~Dvt~~~~v~~~~~~~~~~~g~iDilvnna   95 (251)
T d2c07a1          66 GDVSKKEEISEVINKILTEHKNVDILVNNA   95 (251)
T ss_dssp             CCTTCHHHHHHHHHHHHHHCSCCCEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCceeeeecc
Confidence            888887777766654444457899999765

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.88  E-value=0.0012  Score=56.13  Aligned_cols=89  Identities=13%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|+++.++|.| .+|+|.++|+.|++.|. ++.+.|.+.                 +.+.+.+++.+++..+  ++..+.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~-----------------~~~~~~~~~~~~~~g~--~~~~~~   63 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK-----------------EDEANSVLEEIKKVGG--EAIAVK   63 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-----------------HHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc-----------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            47888888886 57999999999999997 677777432                 1356777777877654  667788


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+..+++++.....+.+.|++|.+.
T Consensus        64 ~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA   93 (261)
T d1geea_          64 GDVTVESDVINLVQSAIKEFGKLDVMINNA   93 (261)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCEeeccc
Confidence            888887777766554333446899999875

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.87  E-value=0.00096  Score=56.28  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=62.7

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ||+++.++|.| .+|+|.++|+.|++.|. ++.+.|.+.                  .+.+.+++.+   ...-++..+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~------------------~~~~~~~~~~---~~~~~~~~~~   60 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHS------------------DVGEKAAKSV---GTPDQIQFFQ   60 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHH---CCTTTEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHh---CCCCcEEEEE
Confidence            68888888886 57899999999999997 588877432                  2444444444   3334677888


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+...++++.....+.+.|++|.+.
T Consensus        61 ~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNA   90 (251)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCceEEEecc
Confidence            888887777766554444457899999876

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.86  E-value=0.0014  Score=50.42  Aligned_cols=32  Identities=34%  Similarity=0.534  Sum_probs=29.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      ||.|+|+|.+|+.++..|+..|. .+|.|+|-+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccc
Confidence            79999999999999999999995 799999843

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.84  E-value=0.0022  Score=50.85  Aligned_cols=35  Identities=29%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..+|+|+|+|++|...++.+..+|..++..+|.+.
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            56799999999999999999999999999998654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.83  E-value=0.0025  Score=53.69  Aligned_cols=84  Identities=20%  Similarity=0.238  Sum_probs=62.2

Q ss_pred             CcEEEE-c-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVV-G-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vv-G-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      |||+|| | .+|+|.++|+.|++.|. ++.+.|.+                  ..|.+.+++.+++..  .++..+..++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~------------------~~~l~~~~~~i~~~g--~~~~~~~~Dv   59 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYN------------------DATAKAVASEINQAG--GHAVAVKVDV   59 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC------------------HHHHHHHHHHHHHTT--CCEEEEECCT
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECC------------------HHHHHHHHHHHHhcC--CcEEEEEeeC
Confidence            577554 5 46899999999999997 68888743                  236677777787764  4567788889


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+...++++.....+.+.|++|.+.
T Consensus        60 ~~~~~v~~~~~~~~~~~g~iDilVnnA   86 (255)
T d1gega_          60 SDRDQVFAAVEQARKTLGGFDVIVNNA   86 (255)
T ss_dssp             TSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCccEEEecc
Confidence            887777766655444567899999765

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.82  E-value=0.001  Score=52.94  Aligned_cols=126  Identities=11%  Similarity=0.077  Sum_probs=67.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc-cCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF-FQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~-~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|.|||+|..|+.+|.+|++.|. ++.++|.+.=....+.... -.....|-...+-    +.+......+....  +
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~ii~~--~   74 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEE----MVSKLKKPRRIILL--V   74 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHH----HHHHBCSSCEEEEC--S
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccccccchhhhhh----hhhhhcccceEEEe--c
Confidence            5789999999999999999999997 5777774431111111100 0111122222222    22222222222211  1


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      ...+...+.+........+-++||+++. ++.....+.+.+.+.++.++++.+++
T Consensus        75 ~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsG  129 (176)
T d2pgda2          75 KAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSG  129 (176)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             CchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceecccccc
Confidence            1112222111110001245578887755 56666777888899999999887765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.0016  Score=54.88  Aligned_cols=88  Identities=18%  Similarity=0.212  Sum_probs=62.9

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .|.+.+.+.+.+.. ..++..+..
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~------------------~~~~~~~~~l~~~~-g~~~~~~~~   62 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNL------------------EEASEAAQKLTEKY-GVETMAFRC   62 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHH-CCCEEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHHh-CCcEEEEEc
Confidence            67888889876 5799999999999997 688888543                  24444445554433 356777888


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.++.+++.-...+.+.|++|.+.
T Consensus        63 Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA   91 (251)
T d1vl8a_          63 DVSNYEEVKKLLEAVKEKFGKLDTVVNAA   91 (251)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            88887777766554333456899999875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.011  Score=45.35  Aligned_cols=93  Identities=12%  Similarity=0.031  Sum_probs=61.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHh-hCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQN-INPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~-~np~v~v~~~~~~i   95 (292)
                      +-||+|+|+|.+|..+++.|...|. ++++||.|.=                  +..   +++.+ ....+.  ....+.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~------------------~~~---~~~~~~~~~~~~--vi~Gd~   58 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE------------------DDI---KQLEQRLGDNAD--VIPGDS   58 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH------------------HHH---HHHHHHHCTTCE--EEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccch------------------hHH---HHHHHhhcCCcE--EEEccC
Confidence            4589999999999999999999996 5778887651                  111   22222 223343  345555


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG  139 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~  139 (292)
                      ++++.+...      .++++|.||.++++...-..+...+++.+
T Consensus        59 ~d~~~L~~a------~i~~a~~vi~~~~~d~~n~~~~~~~r~~~   96 (153)
T d1id1a_          59 NDSSVLKKA------GIDRCRAILALSDNDADNAFVVLSAKDMS   96 (153)
T ss_dssp             TSHHHHHHH------TTTTCSEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHh------ccccCCEEEEccccHHHHHHHHHHHHHhC
Confidence            554444432      13789999999998876666666666643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.78  E-value=0.0012  Score=55.80  Aligned_cols=85  Identities=20%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .+   +++...++++  ++..+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~------------------~~---l~~~~~~~~~--~~~~~~   57 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINL------------------EA---ARATAAEIGP--AACAIA   57 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCH------------------HH---HHHHHHHHCT--TEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HH---HHHHHHHhCC--ceEEEE
Confidence            478889999976 7999999999999996 688887431                  13   3334445554  456778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+.++++.....+.+.|++|...
T Consensus        58 ~Dvt~~~~v~~~~~~~~~~~g~iDilVnnA   87 (256)
T d1k2wa_          58 LDVTDQASIDRCVAELLDRWGSIDILVNNA   87 (256)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eeCCCHHHHHHHHHHHHHHhCCccEEEeec
Confidence            888887777766654444456899999875

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.001  Score=56.31  Aligned_cols=88  Identities=18%  Similarity=0.252  Sum_probs=64.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++++|.|+ +|+|.++|+.|++.|. ++.+.|.+                  +.|.+.+++.+++..+  ++..+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~------------------~~~~~~~~~~l~~~g~--~~~~~~   66 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDIN------------------ADAANHVVDEIQQLGG--QAFACR   66 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESC------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC------------------HHHHHHHHHHHHHcCC--cEEEEE
Confidence            467888888765 6899999999999996 58887743                  2366777788887654  566778


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+..+.+++.....+.+.|++|.+.
T Consensus        67 ~Dvs~~~~~~~~~~~~~~~~g~iDilvnnA   96 (255)
T d1fmca_          67 CDITSEQELSALADFAISKLGKVDILVNNA   96 (255)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEeeeCC
Confidence            888877777766554433456899999875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.75  E-value=0.0014  Score=55.02  Aligned_cols=85  Identities=14%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|+++.++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .|.+.+++.+.     -++..+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~~~-----~~~~~~~   58 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILD------------------EEGKAMAAELA-----DAARYVH   58 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHTG-----GGEEEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHhh-----CcceEEE
Confidence            578899999876 6899999999999998 588887532                  24444444432     2355667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+++++++-...+.+.|++|.+.
T Consensus        59 ~Dv~~~~~v~~~~~~~~~~~g~idilinnA   88 (244)
T d1nffa_          59 LDVTQPAQWKAAVDTAVTAFGGLHVLVNNA   88 (244)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eecCCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence            778776776665544433446789988776

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.75  E-value=0.00084  Score=56.83  Aligned_cols=89  Identities=13%  Similarity=0.148  Sum_probs=62.0

Q ss_pred             HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++|+++|.|++ |+|.++|+.|++.|. ++.++|.+.-                  +.+.+.+.+.+.. ..++..+.
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~------------------~~~~~~~~~~~~~-g~~~~~~~   65 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAA------------------DAVEVTEKVGKEF-GVKTKAYQ   65 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCT------------------THHHHHHHHHHHH-TCCEEEEE
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHH------------------HHHHHHHHHHHHh-CCceEEEE
Confidence            4678888888665 699999999999997 6888886431                  2222333343322 34567788


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.++.+++.....+.+.|++|.+.
T Consensus        66 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          66 CDVSNTDIVTKTIQQIDADLGPISGLIANA   95 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCcEecccc
Confidence            888887777766655444557899998875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.73  E-value=0.0022  Score=51.13  Aligned_cols=88  Identities=16%  Similarity=0.234  Sum_probs=53.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC--C--cccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY--D--KVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~--D--~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+|.|+|+|..|+.+|..|+..|. +++|...  |  .++.-|-.|                      .||.........
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~----------------------~~~~~~~~~~~~   57 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGR----------------------EHPRLGVKLNGV   57 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTC----------------------CBTTTTBCCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhh----------------------hhhhhcchhccc
Confidence            379999999999999999999984 6777532  1  122111122                      111111111111


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMAC  135 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~  135 (292)
                      .+....++.+.+       .++|+||.|+.....+..+.+..
T Consensus        58 ~i~~~~~~~~~~-------~~ad~Ii~avps~~~~~~~~~l~   92 (180)
T d1txga2          58 EIFWPEQLEKCL-------ENAEVVLLGVSTDGVLPVMSRIL   92 (180)
T ss_dssp             EEECGGGHHHHH-------TTCSEEEECSCGGGHHHHHHHHT
T ss_pred             cccccccHHHHH-------hccchhhcccchhhhHHHHHhhc
Confidence            111124555555       78999999999888887776653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.71  E-value=0.0031  Score=48.32  Aligned_cols=33  Identities=39%  Similarity=0.593  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D   50 (292)
                      .||.|||+|.+|+.+|..|+..|. .+|.|+|-+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            389999999999999999999996 689999843

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.71  E-value=0.00035  Score=57.37  Aligned_cols=112  Identities=21%  Similarity=0.233  Sum_probs=63.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE-EEe
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE-VHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~-~~~   92 (292)
                      .|+++||+|.|.|.+|..+|+.|...| .++++.|.|.-...+...  ++...+..       +.+....-++-+- +..
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G-akvvv~d~d~~~~~~~~~--~g~~~~~~-------~~~~~~~~DI~iPcA~~   93 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTDTERVAHAVA--LGHTAVAL-------EDVLSTPCDVFAPCAMG   93 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHH--TTCEECCG-------GGGGGCCCSEEEECSCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEecchHHHHHHHHh--hcccccCc-------cccccccceeeeccccc
Confidence            488899999999999999999999999 678899987543332211  11111100       0011111122111 111


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      ..|+. ++...+         ++.+|+.+..++-+.....+...++|+.++.-
T Consensus        94 ~~I~~-~~a~~i---------~ak~i~e~AN~p~~~~~~~~~L~~rgI~~iPD  136 (201)
T d1c1da1          94 GVITT-EVARTL---------DCSVVAGAANNVIADEAASDILHARGILYAPD  136 (201)
T ss_dssp             CCBCH-HHHHHC---------CCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred             ccccH-HHHhhh---------hhheeeccCCCCcchhhHHHHhcccceEEEeh
Confidence            22232 333321         46777777766554444566777888866543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.68  E-value=0.00088  Score=53.20  Aligned_cols=34  Identities=21%  Similarity=0.440  Sum_probs=31.5

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..+||+|||+|..|-..|..|++.|...++|+|-
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~   36 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEK   36 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEe
Confidence            3689999999999999999999999988999884

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.67  E-value=0.0037  Score=52.55  Aligned_cols=84  Identities=18%  Similarity=0.295  Sum_probs=62.5

Q ss_pred             CcEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVV--GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vv--G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      -||+||  |.+|+|.++|+.|++.|. ++.+.|.+.                  .+.+.+++.|++..  .++..+..++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~------------------~~l~~~~~~l~~~g--~~~~~~~~Dv   60 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGE------------------EGLRTTLKELREAG--VEADGRTCDV   60 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEECCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEEeec
Confidence            356555  556899999999999996 588877532                  36777777887664  4677888888


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.++++++.....+.+.|++|.+.
T Consensus        61 s~~~~v~~~~~~~~~~~g~iDilVnnA   87 (257)
T d2rhca1          61 RSVPEIEALVAAVVERYGPVDVLVNNA   87 (257)
T ss_dssp             TCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence            887777776655444567899999775

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.66  E-value=0.0033  Score=53.07  Aligned_cols=87  Identities=13%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++|+|+|.| .+|+|.++|+.|++.|. ++.++|.+                  ..+.+.+.+.+++...  .+..+..
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~------------------~~~l~~~~~~~~~~~~--~~~~~~~   62 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN------------------EKELDECLEIWREKGL--NVEGSVC   62 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC------------------HHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC------------------HHHHHHHHHHHHhcCC--CceEEEe
Confidence            6789999997 67899999999999997 79998853                  2466667777776654  4556677


Q ss_pred             cccchhhHHHHHhcCCCCC-CCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTE-GPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~-~~~DlVv~a~  122 (292)
                      ++++.++.+++++.....+ ...|++|.+.
T Consensus        63 D~s~~~~~~~~~~~~~~~~~g~idilinna   92 (258)
T d1ae1a_          63 DLLSRTERDKLMQTVAHVFDGKLNILVNNA   92 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTSCCCEEEECC
T ss_pred             ecCCHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence            8877677665544333233 4688888765

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.65  E-value=0.0015  Score=50.37  Aligned_cols=32  Identities=28%  Similarity=0.252  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      .||.|||+|.+|+.+|..|+..|. .+|.|+|-
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   33 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEec
Confidence            389999999999999999998885 78999983

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.64  E-value=0.0021  Score=54.45  Aligned_cols=87  Identities=21%  Similarity=0.358  Sum_probs=60.4

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ||+++.++|.| .+|+|.++|+.|++.|. ++.++|.+.                  .+.+.+.+.+..   .-.+..+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~------------------~~~~~~~~~l~~---~~~~~~~~   60 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIAD------------------DHGQKVCNNIGS---PDVISFVH   60 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHCC---TTTEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHhcC---CCceEEEE
Confidence            78899999997 56899999999999996 588888532                  244444444433   22355667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+..+.+++.....+.+.|++|.+.
T Consensus        61 ~Dv~~~~~v~~~~~~~~~~~g~iD~lVnnA   90 (268)
T d2bgka1          61 CDVTKDEDVRNLVDTTIAKHGKLDIMFGNV   90 (268)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCcceecccc
Confidence            788777777665544333446889988765

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.63  E-value=0.0014  Score=55.50  Aligned_cols=89  Identities=18%  Similarity=0.308  Sum_probs=62.3

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |+++.++|.| .+|+|.++|+.|++.|. ++.+.|...                 ..+.+.+++.+.+.. ..++..+..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~-----------------~~~~~~~~~~~~~~~-g~~~~~~~~   62 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGD-----------------AAEIEKVRAGLAAQH-GVKVLYDGA   62 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSC-----------------HHHHHHHHHHHHHHH-TSCEEEECC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCc-----------------HHHHHHHHHHHHHhc-CCcEEEEEC
Confidence            4566666665 56799999999999997 688876421                 124555666665544 457788888


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.++++++.....+.+.|++|...
T Consensus        63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA   91 (260)
T d1x1ta1          63 DLSKGEAVRGLVDNAVRQMGRIDILVNNA   91 (260)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCcEEEeec
Confidence            89887777766654433456899998775

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0015  Score=55.04  Aligned_cols=84  Identities=20%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ||++|+++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .+.+.++    +..+.  +..+.
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~------------------~~~~~~~----~~~~~--~~~~~   57 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDE------------------SGGRALE----QELPG--AVFIL   57 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHH----HHCTT--EEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHH----HhcCC--CeEEE
Confidence            789999999976 7999999999999997 688887432                  1233222    22333  45666


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+..+.+++.....+.+.|++|...
T Consensus        58 ~Dvs~~~~v~~~~~~~~~~~g~iDilVnnA   87 (250)
T d1ydea1          58 CDVTQEDDVKTLVSETIRRFGRLDCVVNNA   87 (250)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEecc
Confidence            777776777666554433446788888765

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.63  E-value=0.0011  Score=51.18  Aligned_cols=33  Identities=33%  Similarity=0.540  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +||.|||+|.+|+.+|..|+..++.++.++|.+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~   34 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence            599999999999999999999999999998853

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.011  Score=47.28  Aligned_cols=91  Identities=16%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      -+||+|+|+ |.+|++++..|.+.|. ++++++.+.-.....                        ..+.+  +....++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~------------------------~~~~~--~~~~gD~   55 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSE------------------------GPRPA--HVVVGDV   55 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSS------------------------SCCCS--EEEESCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccc------------------------ccccc--ccccccc
Confidence            478999995 8899999999999996 688887543211000                        01233  3456667


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCH----------HHHHHHHHHHHHhCCc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNF----------EARMTINMACNQLGQT  141 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~----------~~r~~in~~~~~~~~p  141 (292)
                      ++.+.+.+.+       .++|+||.+....          .....+-+++.+++++
T Consensus        56 ~d~~~l~~al-------~~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~  104 (205)
T d1hdoa_          56 LQAADVDKTV-------AGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVD  104 (205)
T ss_dssp             TSHHHHHHHH-------TTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred             cchhhHHHHh-------cCCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCC
Confidence            6667776665       6899999887421          1223455677788875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.59  E-value=0.0012  Score=51.23  Aligned_cols=36  Identities=33%  Similarity=0.496  Sum_probs=31.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      ++.||.|||+|.+|+.+|..|+..|. .++.|+|-+.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            46799999999999999999999995 6899999543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.56  E-value=0.002  Score=54.12  Aligned_cols=87  Identities=17%  Similarity=0.277  Sum_probs=61.0

Q ss_pred             HHHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          13 EHIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        13 ~~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      +||+++.++|.|. +|+|.++|+.|++.|. ++.+.|.+.-                 .+   +.+.+++..  .++..+
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~-----------------~~---~~~~~~~~g--~~~~~~   57 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA-----------------PE---AEAAIRNLG--RRVLTV   57 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC-----------------HH---HHHHHHHTT--CCEEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch-----------------HH---HHHHHHHcC--CcEEEE
Confidence            3689999999876 5899999999999997 6888774321                 12   223344443  466777


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++++.+..+.+++.....+.+.|++|...
T Consensus        58 ~~Dvs~~~~v~~~~~~~~~~~G~iDilVnnA   88 (247)
T d2ew8a1          58 KCDVSQPGDVEAFGKQVISTFGRCDILVNNA   88 (247)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EeeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            8888877777766554333456899999775

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0044  Score=51.87  Aligned_cols=87  Identities=18%  Similarity=0.319  Sum_probs=64.4

Q ss_pred             HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |..+.|+|.|++ |+|.++|+.|++.|+ ++.+.|.+.                  .|.+.+++.+...++  ++..+..
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~------------------~~l~~~~~~~~~~~~--~~~~~~~   63 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINK------------------HGLEETAAKCKGLGA--KVHTFVV   63 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcCC--cEEEEEe
Confidence            567777787665 699999999999997 588877432                  366777778877654  5667788


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.....++.-...+.+.|++|.+.
T Consensus        64 Dvs~~~~v~~~~~~i~~~~g~idilinna   92 (244)
T d1yb1a_          64 DCSNREDIYSSAKKVKAEIGDVSILVNNA   92 (244)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred             eCCCHHHHHHHHHHHHHHcCCCceeEeec
Confidence            88887777766554333457899999876

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.53  E-value=0.0017  Score=51.21  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +.+|+|+|+|++|...++.+...|..+++.+|.+.
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            57899999999999999999999999999988654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.47  E-value=0.0042  Score=48.39  Aligned_cols=117  Identities=19%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccch
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITLL   98 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~~   98 (292)
                      ||.|||+|-.|+.+|++|++.|.. +.+.|.+.-...++.-...   .+-..-.+++++      .++-+...    .+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~~~~---~~~~~~~e~~~~------~d~ii~~v----~~~   67 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVIAAGA---ETASTAKAIAEQ------CDVIITML----PNS   67 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHTTC---EECSSHHHHHHH------CSEEEECC----SSH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHhhh---hhcccHHHHHhC------CCeEEEEc----CCH
Confidence            799999999999999999999974 7777754322111111000   011112222221      23333222    222


Q ss_pred             hhHHHHHhcCCC---CCCCcceEEeccC-CHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          99 RKVGALAVQGSL---TEGPVDLVLSCVD-NFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        99 ~~~~~~i~~~~~---~~~~~DlVv~a~d-~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                      +..++.+.....   ...+-++|||++. ++.....+.+.+.+.++-++++.+++
T Consensus        68 ~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~g  122 (161)
T d1vpda2          68 PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG  122 (161)
T ss_dssp             HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEES
T ss_pred             HHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccC
Confidence            444443321110   1134567777755 56677788888888899888887764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.47  E-value=0.0088  Score=46.72  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ...+|+|+|+||+|...++.+..+|...++.+|.+.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            356899999999999999999999999999988644

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.43  E-value=0.0066  Score=51.11  Aligned_cols=87  Identities=11%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|++ |+|.++|+.|++.|. ++.+.|.+                  +.+.+.+.+.+.+..  .++..+..
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~------------------~~~l~~~~~~~~~~g--~~~~~~~~   64 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRN------------------QKELNDCLTQWRSKG--FKVEASVC   64 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC------------------HHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC------------------HHHHHHHHHHHHhcC--CCceEEEe
Confidence            678888888775 799999999999997 68887743                  235566666676654  46667778


Q ss_pred             cccchhhHHHHHhcCCCCCC-CcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEG-PVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~-~~DlVv~a~  122 (292)
                      ++++.+..+.+++.....+. +.|++|.+.
T Consensus        65 Dv~~~~~v~~~~~~~~~~~~~~idilvnnA   94 (259)
T d2ae2a_          65 DLSSRSERQELMNTVANHFHGKLNILVNNA   94 (259)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTTCCCEEEECC
T ss_pred             eCCCHHHHHHHHHHHHHHhCCCceEEEECC
Confidence            88876776655543322233 689999875

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0052  Score=52.00  Aligned_cols=86  Identities=24%  Similarity=0.266  Sum_probs=64.5

Q ss_pred             cCcEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVV--GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vv--G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .+||+||  |.+|+|-++|+.|++.|-.++.+.+.+.                  .|.+.+++.|++..+.+  ..+..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~------------------~~~~~~~~~l~~~~~~~--~~~~~D   61 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV------------------TRGQAAVQQLQAEGLSP--RFHQLD   61 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH------------------HHHHHHHHHHHHTTCCC--EEEECC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH------------------HHHHHHHHHHHhcCCcE--EEEEEe
Confidence            5799988  7889999999999998667888877543                  47788888888887665  456778


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +++.+..+++++.....+.+.|++|+..
T Consensus        62 vs~~~sv~~~~~~~~~~~g~iDiLVnNA   89 (275)
T d1wmaa1          62 IDDLQSIRALRDFLRKEYGGLDVLVNNA   89 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHHSSEEEEEECC
T ss_pred             cCCHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            8776766655443333346899999775

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.39  E-value=0.0038  Score=52.30  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .|++|+++|.|++   |+|.++|+.|++.|. ++.+.|.+.                   +.....+.+.+....  ...
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~-------------------~~~~~~~~~~~~~~~--~~~   62 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAE-------------------RLRPEAEKLAEALGG--ALL   62 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSG-------------------GGHHHHHHHHHHTTC--CEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcH-------------------HHHHHHHHhhhccCc--ccc
Confidence            4788999999985   799999999999997 477766421                   111122333333333  345


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +..++++.++.+++++.....+.+.|++|.+.
T Consensus        63 ~~~D~~~~~~v~~~~~~~~~~~g~iDilVnna   94 (256)
T d1ulua_          63 FRADVTQDEELDALFAGVKEAFGGLDYLVHAI   94 (256)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSSEEEEEECC
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCceEEEecc
Confidence            66777776777665544333456899999765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.38  E-value=0.0069  Score=48.84  Aligned_cols=36  Identities=31%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ...+|+|+|+|++|...+..+...|.+++.++|.+.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            356899999999999999888889999999999654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.011  Score=45.49  Aligned_cols=76  Identities=26%  Similarity=0.337  Sum_probs=47.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHh-C-CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRC-G-IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~-G-vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .||.|+|+ |.+|+.+|..|+.. | +.+|.|+|-+.                   ++...+.-|.............  
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-------------------~~~g~a~Dl~h~~~~~~~~~~~--   59 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-------------------VTPGVAVDLSHIPTAVKIKGFS--   59 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-------------------THHHHHHHHHTSCSSCEEEEEC--
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-------------------cchhHHHHHHCCccccCCcEEE--
Confidence            38999995 99999999998754 6 46899988321                   2222233455544444444332  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                       .. .++.++        .+.|+||.+...
T Consensus        60 -~~-~~~~~~--------~~aDvvvitaG~   79 (145)
T d2cmda1          60 -GE-DATPAL--------EGADVVLISAGV   79 (145)
T ss_dssp             -SS-CCHHHH--------TTCSEEEECCSC
T ss_pred             -cC-CCcccc--------CCCCEEEECCCc
Confidence             11 344433        689999988753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.27  E-value=0.0093  Score=46.65  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ...+|+|+|+|++|...+..+...|..+++.+|...
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            356799999999999999999999999999988643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.26  E-value=0.0048  Score=51.42  Aligned_cols=85  Identities=15%  Similarity=0.234  Sum_probs=59.3

Q ss_pred             HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++++|.|++ |+|.++|+.|+..|. ++.+.|.+.                     +.+++.+.+++.  ++..+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~---------------------~~~~~~~~~~~~--~~~~~~   57 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREE---------------------RLLAEAVAALEA--EAIAVV   57 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH---------------------HHHHHHHHTCCS--SEEEEE
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH---------------------HHHHHHHHHcCC--ceEEEE
Confidence            5788999998765 699999999999996 677776432                     123344445543  556677


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.++++++.-...+.+.|++|.+.
T Consensus        58 ~Dls~~~~i~~~~~~i~~~~g~iDiLinnA   87 (241)
T d2a4ka1          58 ADVSDPKAVEAVFAEALEEFGRLHGVAHFA   87 (241)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred             ecCCCHHHHHHHHHHHHHHhCCccEecccc
Confidence            788777777766554433446889888765

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.25  E-value=0.012  Score=46.50  Aligned_cols=92  Identities=12%  Similarity=0.147  Sum_probs=56.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEE-EEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLI-LFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~-lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      -||.|||+|.+|...+..|....=-+++ +.|.+                  ..|++.++++. .+.+..++  +     
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~------------------~~~~~~~~~~~-~~~~~~~~--~-----   55 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRS------------------LEKAKAFATAN-NYPESTKI--H-----   55 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSS------------------HHHHHHHHHHT-TCCTTCEE--E-----
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCC------------------ccccccchhcc-ccccceee--c-----
Confidence            3799999999999999998775322222 33433                  22443333221 11122332  1     


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                        ++++++++.     .+.|+|+.|+.+. .+..+...|.++|++++
T Consensus        56 --~~~~~ll~~-----~~iD~v~I~tp~~-~h~~~~~~~l~~g~~v~   94 (184)
T d1ydwa1          56 --GSYESLLED-----PEIDALYVPLPTS-LHVEWAIKAAEKGKHIL   94 (184)
T ss_dssp             --SSHHHHHHC-----TTCCEEEECCCGG-GHHHHHHHHHTTTCEEE
T ss_pred             --CcHHHhhhc-----cccceeeecccch-hhcchhhhhhhccceee
Confidence              456666643     5799999998764 55666777888888765

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.22  E-value=0.016  Score=45.61  Aligned_cols=97  Identities=18%  Similarity=0.210  Sum_probs=58.4

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhC-----CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCG-----IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~G-----vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      ++-||+|||+|++|...+.......     +.+|.|+|-|.=.              -+-.++.+.......+...+++.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~--------------~~~~~~~~~~~~~~~~~~~~~~~   67 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKER--------------QDRIAGACDVFIREKAPDIEFAA   67 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHH--------------HHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhH--------------HHHHHHHHHHHHHHhCCCcceEe
Confidence            3568999999999876443333222     3589999865410              00124555566666677777766


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccCCHH--HHHHHHHHHHHhCC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE--ARMTINMACNQLGQ  140 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~--~r~~in~~~~~~~~  140 (292)
                      ..       +..+.+       .++|+||.+.....  .+........++|+
T Consensus        68 ~~-------d~~eal-------~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          68 TT-------DPEEAF-------TDVDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             ES-------CHHHHH-------SSCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             cC-------Chhhcc-------CCCCEEEECCCcCCCCceeHHHhhchhcCc
Confidence            54       222323       79999999987643  33344445555554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.21  E-value=0.0094  Score=45.75  Aligned_cols=32  Identities=28%  Similarity=0.441  Sum_probs=28.6

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCC-CeEEEEeC
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGI-GKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gv-g~i~lvD~   49 (292)
                      +||.|+| +|.+|+.+|..|+..|. .+|.|+|-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            5899999 69999999999999986 47999884

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.20  E-value=0.0054  Score=51.67  Aligned_cols=88  Identities=16%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .|.+.+++.+.+..  .++..+..
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~------------------~~l~~~~~~~~~~~--~~~~~~~~   64 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNE------------------YELNECLSKWQKKG--FQVTGSVC   64 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CceEEEec
Confidence            57888888865 5799999999999997 688887542                  35566666666654  35777777


Q ss_pred             cccchhhHHHHHhcCCCCC-CCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTE-GPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~-~~~DlVv~a~d  123 (292)
                      ++++.+....+++.....+ ...|++|.+..
T Consensus        65 Dv~~~~~v~~~~~~~~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          65 DASLRPEREKLMQTVSSMFGGKLDILINNLG   95 (259)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCccccccccc
Confidence            8877666665554332223 46899998763

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.18  E-value=0.012  Score=48.84  Aligned_cols=85  Identities=15%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             CcEEEE-cC-ChHHHHHHHHHHHhCCC------eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          18 LTVIVV-GV-GGVGSVTAEMLTRCGIG------KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        18 ~~V~vv-G~-GglGs~va~~La~~Gvg------~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      |+|+|| |+ +|+|.++|+.|++.|..      .+.+.|.+                  +.+.+.+++.+++..  .++.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~------------------~~~l~~~~~~~~~~g--~~~~   60 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT------------------AADLEKISLECRAEG--ALTD   60 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC------------------HHHHHHHHHHHHTTT--CEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC------------------HHHHHHHHHHHHhcC--CcEE
Confidence            466544 55 78999999999999986      35555532                  235566667776654  5677


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .+..++++.+.++++++.....+.+.|++|.+.
T Consensus        61 ~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnA   93 (240)
T d2bd0a1          61 TITADISDMADVRRLTTHIVERYGHIDCLVNNA   93 (240)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             EEEecCCCHHHHHHHHHHHHHHcCCcceeeccc
Confidence            788888887777766655444567899999875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.13  E-value=0.0045  Score=52.39  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=64.2

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++++|.| .+|+|.++|+.|++.|.. +.+.|.+.-                 .+++.+++.+++...  ++..+.
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~~-----------------~~~~~~~~~~~~~g~--~~~~~~   74 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANST-----------------ESAEEVVAAIKKNGS--DAACVK   74 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCH-----------------HHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCch-----------------HHHHHHHHHHHhhCC--ceeeEe
Confidence            58889999997 789999999999999965 667674321                 245666666776654  456667


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.+.++++.....+...|++|...
T Consensus        75 ~D~~~~~~v~~~~~~~~~~~g~idilV~na  104 (272)
T d1g0oa_          75 ANVGVVEDIVRMFEEAVKIFGKLDIVCSNS  104 (272)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCcccccc
Confidence            778777777766554444456889988776

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.11  E-value=0.0023  Score=50.63  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .||.|||+|-.|+.+|++|+..|.. +.+.|.+.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCe-EEEEECCH
Confidence            5799999999999999999999975 67777543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.07  E-value=0.0032  Score=48.60  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=24.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      ||.|||+|-.|+.++++|.+.|. +++..|
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~   30 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSL   30 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEc
Confidence            79999999999999999999986 345544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.07  E-value=0.005  Score=47.45  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ||.+||+|-+|+.+++.|.++|-.++.+.|.+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            79999999999999999999997788886643

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.07  E-value=0.0063  Score=51.68  Aligned_cols=85  Identities=13%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++|+|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  .|.+.+.   ++..  .++..+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~------------------~~l~~~~---~~~~--~~~~~~~   57 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSA------------------ERLAELE---TDHG--DNVLGIV   57 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHH---HHHG--GGEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHH---HHcC--CCeeEEe
Confidence            478889999976 6999999999999997 688887432                  1222222   2332  3566777


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+..+++++.....+...|++|...
T Consensus        58 ~Dv~~~~~~~~~~~~~~~~~g~idilvnnA   87 (276)
T d1bdba_          58 GDVRSLEDQKQAASRCVARFGKIDTLIPNA   87 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred             cccccHHHHHHHHHHHHHHhCCcccccccc
Confidence            777776666655544333446889988764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.00  E-value=0.0053  Score=51.57  Aligned_cols=85  Identities=12%  Similarity=0.174  Sum_probs=57.2

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ||++++++|.| .+|+|.++|+.|++.|. ++.+.|.+.                  .+.+.+++.   +.  -+...+.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~------------------~~~~~~~~~---~~--~~~~~~~   58 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINE------------------AAGQQLAAE---LG--ERSMFVR   58 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCH------------------HHHHHHHHH---HC--TTEEEEC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHH---hC--CCeEEEE
Confidence            68888898887 45899999999999997 588877432                  233333333   32  2345566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+..+++++.....+.+.|++|.+.
T Consensus        59 ~Dv~~~~~~~~~~~~~~~~~g~iDilVnnA   88 (253)
T d1hxha_          59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNA   88 (253)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred             eecCCHHHHHHHHHHHHHHhCCCCeEEecc
Confidence            677766666655544333456889888776

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.00  E-value=0.0046  Score=50.41  Aligned_cols=36  Identities=31%  Similarity=0.443  Sum_probs=32.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVE   53 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~   53 (292)
                      .+||+|||+|-.|..+|..|++.|. +++|+|.+.+.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~~   41 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCCC
Confidence            5689999999999999999999998 79999987653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.99  E-value=0.0069  Score=50.93  Aligned_cols=84  Identities=18%  Similarity=0.266  Sum_probs=58.2

Q ss_pred             HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|++ |+|.++|+.|++.|. ++.+.|.+.                  .|   +.+..+++.  -++..+..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~------------------~~---~~~~~~~~~--~~~~~~~~   58 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLD------------------EE---GAATARELG--DAARYQHL   58 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HH---HHHHHHTTG--GGEEEEEC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HH---HHHHHHHhC--CceEEEEc
Confidence            678889999765 899999999999997 488887432                  12   223333443  34667778


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+..+++++.....+.+.|++|.+.
T Consensus        59 Dv~~~~~v~~~~~~~~~~~g~iDilVnnA   87 (254)
T d1hdca_          59 DVTIEEDWQRVVAYAREEFGSVDGLVNNA   87 (254)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ccCCHHHHHHHHHHHHHHcCCccEEEecC
Confidence            88877777666554333446889888775

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.97  E-value=0.016  Score=48.22  Aligned_cols=84  Identities=17%  Similarity=0.188  Sum_probs=60.6

Q ss_pred             cEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          19 TVIVV--GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        19 ~V~vv--G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      .|+||  |.+|+|.++|+.|++.|.. +.+.|...-                 .+.+.+++.+++..  .++..+..+++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~~~-----------------~~~~~~~~~~~~~g--~~~~~~~~Dv~   61 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSA-----------------KAAEEVSKQIEAYG--GQAITFGGDVS   61 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCH-----------------HHHHHHHHHHHHHT--CEEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCH-----------------HHHHHHHHHHHHcC--CcEEEEeCCCC
Confidence            46666  5789999999999999964 666564221                 25677778887765  46677888888


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +.+..+++++.-...+.+.|++|.+.
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDiLVnnA   87 (244)
T d1edoa_          62 KEADVEAMMKTAIDAWGTIDVVVNNA   87 (244)
T ss_dssp             SHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCCCcccccc
Confidence            87777766554444457899999876

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.97  E-value=0.0032  Score=53.48  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=32.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVE   53 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~   53 (292)
                      -+|+|||+|-+|+.+|..|++.|..+++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            379999999999999999999999899999987654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.94  E-value=0.012  Score=45.35  Aligned_cols=109  Identities=16%  Similarity=0.112  Sum_probs=59.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC------CCCeEEEEe
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN------PDVTIEVHN   92 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n------p~v~v~~~~   92 (292)
                      ||.+||+|..|+.+|++|.+.|.  ..+.+...                  +|++.+.+......      ....+....
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   61 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP--TLVWNRTF------------------EKALRHQEEFGSEAVPLERVAEARVIFTC   61 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC--EEEECSST------------------HHHHHHHHHHCCEECCGGGGGGCSEEEEC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC--EEEEeCCH------------------HHHHHHHHHcCCcccccccccceeEEEec
Confidence            79999999999999999998763  44433211                  22222222211100      011111111


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEec-cCCHHHHHHHHHHHHHhCCceeecCccc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSC-VDNFEARMTINMACNQLGQTWFESGVSE  149 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a-~d~~~~r~~in~~~~~~~~p~i~~~~~~  149 (292)
                        +...+..............+-.++|++ |-++.....+.+.+.+.++.|+++.+++
T Consensus        62 --~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsG  117 (156)
T d2cvza2          62 --LPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG  117 (156)
T ss_dssp             --CSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEES
T ss_pred             --ccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccC
Confidence              111122221111111122455566655 5567777889999999999999998876

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.93  E-value=0.0046  Score=46.10  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +|++|||.|-+|.++|..|++.|. +++|+..+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech
Confidence            589999999999999999999997 689987653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0064  Score=48.58  Aligned_cols=93  Identities=19%  Similarity=0.148  Sum_probs=56.5

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCC--hHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGL--SKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~--~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      -+.+||+|||.|..|-+.|..|++.|. +++|+|.+..--..++..- ....-..  .-.+...+++++.  .+++.. +
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~~GG~l~~~~-~~p~~~~~~~~~~~~~~~~~~~--gV~i~l-~  115 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQFNIAK-QIPGKEEFYETLRYYRRMIEVT--GVTLKL-N  115 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTHHHHT-TSTTCTTHHHHHHHHHHHHHHH--TCEEEE-S
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCccCceEEEEE-eCcccchHHHHHHHHHHhhhcC--CeEEEe-C
Confidence            357899999999999999999999996 7899886542211111000 0111111  2234455555554  466543 4


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      ..++. +           ...++|.||.++..
T Consensus       116 ~~Vt~-~-----------~~~~~d~vilAtG~  135 (179)
T d1ps9a3         116 HTVTA-D-----------QLQAFDETILASGI  135 (179)
T ss_dssp             CCCCS-S-----------SSCCSSEEEECCCE
T ss_pred             CEEcc-c-----------ccccceeEEEeecC
Confidence            44443 1           12689999999874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.91  E-value=0.035  Score=42.97  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=31.3

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ...+|+|+|+ |++|..+++.+...|..+++++|.+.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccch
Confidence            3557999996 99999999999999999999998654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.89  E-value=0.0075  Score=47.05  Aligned_cols=88  Identities=15%  Similarity=0.138  Sum_probs=52.5

Q ss_pred             CcEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGVGGVGSV-TAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~GglGs~-va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      -||.|||+|..|.. .+..|.+.+--.+.++|.+.                  .+++.+++    ..+...+  +     
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~------------------~~~~~~~~----~~~~~~~--~-----   52 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP------------------KVLGTLAT----RYRVSAT--C-----   52 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCH------------------HHHHHHHH----HTTCCCC--C-----
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCH------------------HHHHHHHH----hcccccc--c-----
Confidence            48999999999976 56777766544666766543                  13333332    2221111  0     


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                        .+++++++      .++|+|+.|+.+ .....+...|.+.|++++
T Consensus        53 --~~~~~ll~------~~iD~V~I~tp~-~~H~~~~~~al~~gk~V~   90 (167)
T d1xeaa1          53 --TDYRDVLQ------YGVDAVMIHAAT-DVHSTLAAFFLHLGIPTF   90 (167)
T ss_dssp             --SSTTGGGG------GCCSEEEECSCG-GGHHHHHHHHHHTTCCEE
T ss_pred             --ccHHHhcc------cccceecccccc-cccccccccccccccccc
Confidence              12223332      468999988766 455566677788888764

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.85  E-value=0.028  Score=46.55  Aligned_cols=88  Identities=25%  Similarity=0.254  Sum_probs=61.4

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +..|+|.| .||+|.++|+.|++.|..++.|+-..               +....+++.+.+.+...  ..++..+..++
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~---------------~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv   71 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRS---------------GPDADGAGELVAELEAL--GARTTVAACDV   71 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESS---------------GGGSTTHHHHHHHHHHT--TCEEEEEECCT
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC---------------ccCHHHHHHHHHHHHhc--ccccccccccc
Confidence            46788887 68999999999999999999885321               11122344455556554  56888889999


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+...++++.-... .+.|.|+.+.
T Consensus        72 ~d~~~~~~~~~~i~~~-~~i~~vv~~a   97 (259)
T d2fr1a1          72 TDRESVRELLGGIGDD-VPLSAVFHAA   97 (259)
T ss_dssp             TCHHHHHHHHHTSCTT-SCEEEEEECC
T ss_pred             chHHHHHHhhcccccc-cccccccccc
Confidence            8878877776654332 3678787665

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.84  E-value=0.025  Score=44.60  Aligned_cols=91  Identities=15%  Similarity=0.125  Sum_probs=55.1

Q ss_pred             hcCcEEEEcCChHHHH-HHHHHHHhC-CCeEE-EEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          16 RTLTVIVVGVGGVGSV-TAEMLTRCG-IGKLI-LFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~-va~~La~~G-vg~i~-lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      ++-||.|||+|..|.. .+..|...+ .-+++ +.|.+.                  .|++.+++..    +...+  + 
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~------------------~~~~~~~~~~----~~~~~--~-   56 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTR------------------SHAEEFAKMV----GNPAV--F-   56 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSH------------------HHHHHHHHHH----SSCEE--E-
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccH------------------hhhhhhhccc----cccce--e-
Confidence            4558999999999986 466676543 22343 555432                  2443333322    22222  1 


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                            .+++++++.     .+.|+|+.|+.+ .....+...+.+.|++++
T Consensus        57 ------~~~~ell~~-----~~id~v~I~tp~-~~h~~~~~~al~~gk~V~   95 (181)
T d1zh8a1          57 ------DSYEELLES-----GLVDAVDLTLPV-ELNLPFIEKALRKGVHVI   95 (181)
T ss_dssp             ------SCHHHHHHS-----SCCSEEEECCCG-GGHHHHHHHHHHTTCEEE
T ss_pred             ------eeeeccccc-----cccceeeccccc-cccccccccccccchhhh
Confidence                  345566643     579999999865 455666677788887654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0098  Score=49.53  Aligned_cols=84  Identities=20%  Similarity=0.190  Sum_probs=57.5

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |+++.++|.| .+|+|.++|+.|++.|. ++.+.|.+.                  .+.+.+++.+.     .+...+..
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~------------------~~l~~~~~~~~-----~~~~~~~~   57 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSE------------------NGAQAISDYLG-----ANGKGLML   57 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSH------------------HHHHHHHHHHG-----GGEEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHhC-----CCCcEEEE
Confidence            5677777776 56899999999999997 577777432                  24455555443     24556677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+..+++++.....+.+.|++|.+.
T Consensus        58 Dv~~~~~v~~~~~~~~~~~g~iDilVnnA   86 (243)
T d1q7ba_          58 NVTDPASIESVLEKIRAEFGEVDILVNNA   86 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             EecCHHHhhhhhhhhhcccCCcceehhhh
Confidence            78776666655554433457899998775

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.029  Score=46.70  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=61.9

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCC--CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGI--GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gv--g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      |+++.++|-|+ +|+|.++|+.|++.+-  -++.++|.+                  ..|.+.+++.|...++..++..+
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~------------------~~~l~~~~~~l~~~~~~~~~~~~   65 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARS------------------ESMLRQLKEELGAQQPDLKVVLA   65 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESC------------------HHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECC------------------HHHHHHHHHHHHhhcCCceEEEE
Confidence            34444444465 5999999999998532  368887743                  24778888999999999999999


Q ss_pred             eccccchhhHHHHHhc----CCCCCCCcceEEec
Q psy2302          92 NFNITLLRKVGALAVQ----GSLTEGPVDLVLSC  121 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~----~~~~~~~~DlVv~a  121 (292)
                      ..++++.+..+.+++.    ........|++|..
T Consensus        66 ~~Dvs~~~~v~~l~~~~~~~~~~~~~~~~~lvnn   99 (259)
T d1oaaa_          66 AADLGTEAGVQRLLSAVRELPRPEGLQRLLLINN   99 (259)
T ss_dssp             ECCTTSHHHHHHHHHHHHHSCCCTTCCEEEEEEC
T ss_pred             EccCCCHHHHHHHHHHHHHhhhhccCceEEEEec
Confidence            9999887776655432    11223456777764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.76  E-value=0.0077  Score=50.51  Aligned_cols=88  Identities=19%  Similarity=0.143  Sum_probs=61.6

Q ss_pred             HhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |..|.|+|.| .+|+|.++|+.|++.|..- .+.+.+.                 ..+.+.+++.+++...  ++..+..
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~V-vi~~~~~-----------------~~~~~~~~~~~~~~g~--~~~~~~~   63 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASV-VVNYGSS-----------------SKAAEEVVAELKKLGA--QGVAIQA   63 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEE-EEEESSC-----------------HHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEE-EEEcCCC-----------------hHHHHHHHHHHHHcCC--CceEecC
Confidence            6677788775 4579999999999999874 4443321                 1356777777777654  5667888


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+...++++.....+...|++|.+.
T Consensus        64 D~~~~~~v~~~~~~~~~~~g~idilinna   92 (259)
T d1ja9a_          64 DISKPSEVVALFDKAVSHFGGLDFVMSNS   92 (259)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCcEEEecc
Confidence            88876777665554433456889999776

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.72  E-value=0.014  Score=47.26  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D   50 (292)
                      -||+|||+|..|...|..|++.|.+ +++++|..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3899999999999999999999876 79999854

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.67  E-value=0.0044  Score=49.56  Aligned_cols=32  Identities=38%  Similarity=0.601  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +|+|||+|..|...|..|++.|+.+++|++..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999889999864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.022  Score=47.22  Aligned_cols=80  Identities=20%  Similarity=0.300  Sum_probs=55.9

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++++|.|+ +|+|.++|+.|++.|. ++.++|.+.                  .+.+.+++    ..+.  +..+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~l~~~~~----~~~~--~~~~~   58 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQ------------------ADLDSLVR----ECPG--IEPVC   58 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHH----HSTT--CEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCH------------------HHHHHHHH----hcCC--CeEEE
Confidence            478889999865 5899999999999997 688887432                  12332222    2333  34566


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+.++..+++    +.+.|++|.+.
T Consensus        59 ~Dv~d~~~v~~~~~~----~g~iDilVnnA   84 (244)
T d1pr9a_          59 VDLGDWEATERALGS----VGPVDLLVNNA   84 (244)
T ss_dssp             CCTTCHHHHHHHHTT----CCCCCEEEECC
T ss_pred             EeCCCHHHHHHHHHH----hCCceEEEecc
Confidence            778777777777643    46899999765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.59  E-value=0.015  Score=41.39  Aligned_cols=84  Identities=21%  Similarity=0.256  Sum_probs=55.1

Q ss_pred             hcCcEEEEcCChHH-HHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGVGGVG-SVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~GglG-s~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +.+||-++|.||.| +.+|..|...|. +++-.|...                  +   ...++|.+.  .+++..... 
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~------------------~---~~~~~L~~~--Gi~v~~g~~-   61 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIAD------------------G---VVTQRLAQA--GAKIYIGHA-   61 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCC------------------S---HHHHHHHHT--TCEEEESCC-
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCC------------------C---hhhhHHHHC--CCeEEECCc-
Confidence            36899999999999 888999999997 577766321                  0   122455553  455543211 


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEecc----CCHHHHHHHHHHHHHhCCcee
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCV----DNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~----d~~~~r~~in~~~~~~~~p~i  143 (292)
                         .+++           .+.|+||-+.    ||++.     .+|+++|+|.+
T Consensus        62 ---~~~i-----------~~~d~vV~S~AI~~~npel-----~~A~~~gipii   95 (96)
T d1p3da1          62 ---EEHI-----------EGASVVVVSSAIKDDNPEL-----VTSKQKRIPVI   95 (96)
T ss_dssp             ---GGGG-----------TTCSEEEECTTSCTTCHHH-----HHHHHTTCCEE
T ss_pred             ---cccC-----------CCCCEEEECCCcCCCCHHH-----HHHHHcCCCEE
Confidence               1222           5789998776    45443     35788999975

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.57  E-value=0.014  Score=48.82  Aligned_cols=87  Identities=13%  Similarity=0.148  Sum_probs=53.3

Q ss_pred             HHhcCcEEEEcC-C--hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          14 HIRTLTVIVVGV-G--GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        14 ~L~~~~V~vvG~-G--glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .|++++++|.|+ |  |+|.++|+.|+..|.. +.+.|.+.                   +.+...+.+.+..+...+  
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r~~-------------------~~~~~~~~l~~~~~~~~~--   59 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNE-------------------SLEKRVRPIAQELNSPYV--   59 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESST-------------------TTHHHHHHHHHHTTCCCE--
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeCCH-------------------HHHHHHHHHHhhCCceeE--
Confidence            378999999997 4  6999999999999965 77877321                   111112333444444443  


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ....++..+...+.+......+...|++|.+.
T Consensus        60 ~~~d~~~~~~~~~~~~~~~~~~g~id~lV~na   91 (274)
T d2pd4a1          60 YELDVSKEEHFKSLYNSVKKDLGSLDFIVHSV   91 (274)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             eeecccchhhHHHHHHHHHHHcCCCCeEEeec
Confidence            34444444554444433333346788888665

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0067  Score=44.62  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +||+|||.|.+|.++|..|++.|. +++|++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeec
Confidence            789999999999999999999997 79998753

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.55  E-value=0.0048  Score=50.72  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|||+|||+|.-|...|..|++.|+ +++|+|.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            4799999999999999999999998 6999984

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.54  E-value=0.013  Score=43.44  Aligned_cols=60  Identities=13%  Similarity=0.179  Sum_probs=41.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      .++|+|||.|.+|.++|..|+..|. +++|++...        +++. .-..+.-++.+.+.+++.  .+++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~--------~~l~-~~~~~~~~~~~~~~l~~~--GV~i   89 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP--------RLMS-RAAPATLADFVARYHAAQ--GVDL   89 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS--------STTT-TTSCHHHHHHHHHHHHTT--TCEE
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc--------cccc-ccCCHHHHHHHHHHHHHC--CcEE
Confidence            5899999999999999999999984 689988533        1221 112333455666666654  3444

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.54  E-value=0.042  Score=43.13  Aligned_cols=98  Identities=14%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             cCcEEEEcCChHHHHHH--HHHHHh-C--CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          17 TLTVIVVGVGGVGSVTA--EMLTRC-G--IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va--~~La~~-G--vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      +.||.|||+|++|+..+  ..|++. +  ..+|.|+|-|.=..              +..+..+.+.....++..+++..
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~   67 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERL--------------DAILTIAKKYVEEVGADLKFEKT   67 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHH--------------HHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHH--------------HHHHHHHHHHHHhcCCCeEEEEe
Confidence            46899999999997643  334432 2  46999999664100              11233344445556677777765


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccCCH--HHHHHHHHHHHHhCCce
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF--EARMTINMACNQLGQTW  142 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~--~~r~~in~~~~~~~~p~  142 (292)
                      .       +.++-+       .++|+|+.+....  +.+........+.+.+.
T Consensus        68 t-------d~~eaL-------~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~  106 (171)
T d1obba1          68 M-------NLDDVI-------IDADFVINTAMVGGHTYLEKVRQIGEKYGYYR  106 (171)
T ss_dssp             S-------CHHHHH-------TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTT
T ss_pred             C-------Chhhcc-------cCCCeEeeecccccccceeeehhcchhhhhcc
Confidence            4       333333       7899999987653  33333444455555544

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.51  E-value=0.0077  Score=46.18  Aligned_cols=34  Identities=29%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      .||.|||+|.+|+.+|..|+..|. .+|.|+|-+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            589999999999999999999986 5799999443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.49  E-value=0.0077  Score=46.31  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      .+||+|||.|.+|.++|..|.+.|- .+++++|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5799999999999999999999986 4899998765

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.47  E-value=0.021  Score=44.93  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=52.1

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCC-CCeEEEEec
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINP-DVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np-~v~v~~~~~   93 (292)
                      .+.++|+|+|+|-+|...+....++| .+++++|-+.-.                      .+++....+ .++...   
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~~~~----------------------l~~l~~~~~~~~~~~~---   83 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVER----------------------LSYLETLFGSRVELLY---   83 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHH----------------------HHHHHHHHGGGSEEEE---
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCcHHH----------------------HHHHHHhhcccceeeh---
Confidence            35789999999999999999999999 679999954321                      123333332 233221   


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                        ...+.+.+.+       .++|+||.+.--+
T Consensus        84 --~~~~~l~~~~-------~~aDivI~aalip  106 (168)
T d1pjca1          84 --SNSAEIETAV-------AEADLLIGAVLVP  106 (168)
T ss_dssp             --CCHHHHHHHH-------HTCSEEEECCCCT
T ss_pred             --hhhhhHHHhh-------ccCcEEEEeeecC
Confidence              1235666666       6899999997543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.46  E-value=0.013  Score=48.96  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=54.7

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|++++++|.| .+|+|.++|+.|++.|. ++.+.|.+.                  .+.+.    ..+.+    ...+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~------------------~~~~~----~~~~~----~~~~~   54 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRP------------------EGKEV----AEAIG----GAFFQ   54 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESST------------------THHHH----HHHHT----CEEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHH----HHHcC----CeEEE
Confidence            47788888887 67999999999999996 688887431                  11122    22222    23456


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .++++.+..++++++....+.+.|++|...
T Consensus        55 ~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA   84 (248)
T d2d1ya1          55 VDLEDERERVRFVEEAAYALGRVDVLVNNA   84 (248)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EeCCCHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence            677776666665554433456889888765

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.45  E-value=0.023  Score=47.73  Aligned_cols=51  Identities=22%  Similarity=0.272  Sum_probs=40.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHH
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKV   72 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka   72 (292)
                      .|+++||+|-|.|-+|.++++.|...|..-+.+.|.+-        .+|.++-+-..+.
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G--------~i~~~~Gld~~~l   83 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDG--------YIYDPEGITTEEK   83 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTE--------EEECTTCSCSHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc--------eEecCCCCCHHHH
Confidence            58899999999999999999999999988888888653        2345555544443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.024  Score=47.06  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=30.6

Q ss_pred             HHhcCcEEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVV-GVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vv-G~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ||++++++|. |.+|+|.++|+.|++.|. ++.++|.+.
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            5778888777 567999999999999995 799988653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.34  E-value=0.021  Score=42.41  Aligned_cols=87  Identities=7%  Similarity=0.048  Sum_probs=57.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      +||+|+|.|.+|..+++.|...   ++.++|.|.-                  +.+    .++.  .++  ..+..+.++
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~~------------------~~~----~~~~--~~~--~~i~Gd~~~   51 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAEDEN------------------VRK----KVLR--SGA--NFVHGDPTR   51 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESCTT------------------HHH----HHHH--TTC--EEEESCTTS
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcchH------------------HHH----HHHh--cCc--cccccccCC
Confidence            5899999999999999999654   4677876541                  222    2222  133  344555555


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG  139 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~  139 (292)
                      .+.+.+.      .+.+++.+|.++++...-..+-..+++.+
T Consensus        52 ~~~L~~a------~i~~A~~vi~~~~~d~~n~~~~~~~r~~~   87 (129)
T d2fy8a1          52 VSDLEKA------NVRGARAVIVNLESDSETIHCILGIRKID   87 (129)
T ss_dssp             HHHHHHT------TCTTCSEEEECCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHh------hhhcCcEEEEeccchhhhHHHHHHHHHHC
Confidence            4444331      23789999999998877776666666653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.32  E-value=0.0076  Score=48.70  Aligned_cols=41  Identities=27%  Similarity=0.451  Sum_probs=34.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR   59 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R   59 (292)
                      .||.|+|+|-+|..+|..|+..|. +++.+|-|.=...+++.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            379999999999999999999996 58899988755556665

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.29  E-value=0.055  Score=43.99  Aligned_cols=106  Identities=17%  Similarity=0.221  Sum_probs=66.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCCCC---CccCc---CCCCC-hHHHHHHHHHHhhCCCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDKVELANMNR---LFFQP---DQCGL-SKVEAARITLQNINPDV   86 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl~R---~~~~~---~diG~-~Ka~a~~~~l~~~np~v   86 (292)
                      .+.||.|||+||-|+.++..|.+.|+.  ++..+|.|.-.+++..-   ..++.   ...|- .+.+..++...+.    
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~----   89 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKES----   89 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHT----
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHHH----
Confidence            568999999999999999999999985  66788998877665421   12222   11221 1222222221111    


Q ss_pred             eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC-----HHHHHHHHHHHHHhCCcee
Q psy2302          87 TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN-----FEARMTINMACNQLGQTWF  143 (292)
Q Consensus        87 ~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-----~~~r~~in~~~~~~~~p~i  143 (292)
                                 .+.+.+.+       .++|+||.+..-     --+-..+.+++++.+++.+
T Consensus        90 -----------~~~I~~~l-------~~~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv  133 (209)
T d2vapa1          90 -----------AEEIKAAI-------QDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTV  133 (209)
T ss_dssp             -----------HHHHHHHH-------TTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEE
T ss_pred             -----------HHHHHHhc-------cCCCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEE
Confidence                       13444444       679988877531     2344568899999988754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.20  E-value=0.0084  Score=49.22  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..||+|||+|..|..+|..|++.|+ +++|+|.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er   35 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYER   35 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeC
Confidence            4689999999999999999999998 7999985

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.15  E-value=0.012  Score=43.11  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=29.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+|++|+|.|.+|.++|..|++.|. ++++++.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~   52 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEA   52 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEee
Confidence            4799999999999999999999996 6899875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.14  E-value=0.0091  Score=50.07  Aligned_cols=33  Identities=21%  Similarity=0.536  Sum_probs=29.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +.+|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            3589999999999999999999999 68898864

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.14  E-value=0.06  Score=41.75  Aligned_cols=76  Identities=14%  Similarity=0.086  Sum_probs=45.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhC-----CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEe
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCG-----IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHN   92 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~G-----vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~   92 (292)
                      ||+|+|+|++|...+......+     +.+|.|+|-|.                  .|++.+.+..+.. ....++..  
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~------------------~k~~~~~d~~~~~~~~~~~~~~--   61 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE------------------EKQKIVVDFVKRLVKDRFKVLI--   61 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH------------------HHHHHHHHHHHHHHTTSSEEEE--
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc------------------HHHHHHHHHHHhhhccCceEEE--
Confidence            7999999999987775433222     57999998543                  3444444433332 22333332  


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE  126 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~  126 (292)
                         +. +..+++        .+.|+||.+.....
T Consensus        62 ---t~-~~~~~l--------~~aDvVVita~~~~   83 (162)
T d1up7a1          62 ---SD-TFEGAV--------VDAKYVIFQFRPGG   83 (162)
T ss_dssp             ---CS-SHHHHH--------TTCSEEEECCCTTH
T ss_pred             ---ec-Cccccc--------CCCCEEEEecccCC
Confidence               11 233332        78999999987653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.12  E-value=0.011  Score=43.82  Aligned_cols=56  Identities=18%  Similarity=0.195  Sum_probs=39.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI   82 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~   82 (292)
                      .++|+|+|.|.+|.++|..|++.|. ++++++...        +++. ...++.-++.+.+.+++.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~--------~~l~-~~~d~~~~~~~~~~l~~~   85 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD--------RPLG-VYLDKEFTDVLTEEMEAN   85 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS--------STTT-TTCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccce-EEEEEEecC--------cccc-cccchhhHHHHHHHhhcC
Confidence            5699999999999999999999996 489987532        1121 123334456666666654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.12  E-value=0.012  Score=42.96  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++|+|||.|.+|.++|..|++.|. ++||++.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~   53 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGT-KVTILEG   53 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CeEEEECCCccceeeeeeeccccc-EEEEEEe
Confidence            799999999999999999999995 4898873

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.10  E-value=0.04  Score=42.38  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=47.4

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC-Ce-----EEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGI-GK-----LILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gv-g~-----i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .||.|+|+ |.+|+.++..|+..++ ++     +.++|.+.                ...|.+.....+........-..
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~   68 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ----------------AMKALEGVVMELEDCAFPLLAGL   68 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG----------------GHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc----------------chhhHcCchhhhhcccccccccc
Confidence            38999997 9999999999998775 32     33333322                23356665555555443222111


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                      ..   .. ....++        .+.|+||.+...
T Consensus        69 ~~---~~-~~~~~~--------~~advViitaG~   90 (154)
T d1y7ta1          69 EA---TD-DPKVAF--------KDADYALLVGAA   90 (154)
T ss_dssp             EE---ES-CHHHHT--------TTCSEEEECCCC
T ss_pred             cc---CC-chhhhc--------ccccEEEeecCc
Confidence            11   11 222222        789999998753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.042  Score=42.72  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=26.9

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      ++.+|+|.|+ |++|...++.+...|...+.+++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~   61 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAG   61 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccc
Confidence            4567999996 99999999999999986555544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.04  E-value=0.05  Score=44.95  Aligned_cols=79  Identities=22%  Similarity=0.302  Sum_probs=54.8

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      |++++++|.|+ +|+|.++|+.|++.|. ++.++|.+.                  .|.+.+    .+..+.+  ..+..
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~------------------~~l~~~----~~~~~~~--~~~~~   57 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTN------------------SDLVSL----AKECPGI--EPVCV   57 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHH----HHHSTTC--EEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHH----HHhcCCC--eEEEE
Confidence            57888899876 5899999999999996 588877432                  122222    2233443  45567


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++++.+.+++.+++    +.+.|++|.+.
T Consensus        58 Dv~~~~~v~~~~~~----~g~iDilVnnA   82 (242)
T d1cyda_          58 DLGDWDATEKALGG----IGPVDLLVNNA   82 (242)
T ss_dssp             CTTCHHHHHHHHTT----CCCCSEEEECC
T ss_pred             eCCCHHHHHHHHHH----cCCCeEEEECC
Confidence            78777777776643    47899999775

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.04  E-value=0.011  Score=48.74  Aligned_cols=34  Identities=29%  Similarity=0.530  Sum_probs=31.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      -+|+|||+|..|..+|..|++.|+..++|++...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            3799999999999999999999999999998643

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.011  Score=43.87  Aligned_cols=32  Identities=19%  Similarity=0.434  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+|++|+|.|.+|.++|..|++.|. +++|++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~   54 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEF   54 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEe
Confidence            4799999999999999999999996 5888875

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.92  E-value=0.037  Score=42.39  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ||.+||+|-+|+.++..|...| .++++.|.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~-~~i~v~~r   31 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTP-HELIISGS   31 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSS-CEEEEECS
T ss_pred             EEEEEeccHHHHHHHHHHHhCC-CeEEEEcC
Confidence            7999999999999999999876 46666553

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.90  E-value=0.036  Score=45.14  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ..++|+|||+|..|-..|..|++.|. +++|+|..
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~   81 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTA   81 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeec
Confidence            56899999999999999999999996 58888843

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=94.85  E-value=0.042  Score=47.87  Aligned_cols=81  Identities=15%  Similarity=0.229  Sum_probs=53.8

Q ss_pred             CcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      .||+|.|+.| +|+++++.|...|...+..+|...-. .+..+                   +..+...-+++.+..+++
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~Dl~   60 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYA-GNLES-------------------LSDISESNRYNFEHADIC   60 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTT-CCGGG-------------------GTTTTTCTTEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc-ccHHH-------------------HHhhhhcCCcEEEEccCC
Confidence            3799998766 99999999999999888888854322 11111                   111222234666777887


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +...+.+++..     ..+|+|+.+..
T Consensus        61 d~~~l~~~~~~-----~~~d~VihlAa   82 (361)
T d1kewa_          61 DSAEITRIFEQ-----YQPDAVMHLAA   82 (361)
T ss_dssp             CHHHHHHHHHH-----HCCSEEEECCS
T ss_pred             CHHHHHHHHHh-----CCCCEEEECcc
Confidence            76677666542     36899998754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.83  E-value=0.016  Score=43.57  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      ..+||+|||.|-+|.++|..|+..|. ++++++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            36899999999999999999999996 599988643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.81  E-value=0.012  Score=48.70  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=30.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVE   53 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~   53 (292)
                      .|+|||+|-.|+.+|..|++.| .+++|+|.+.+.
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G-~~V~vlE~~~~~   39 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKEN-KNTALFESGTMG   39 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCCC
Confidence            5999999999999999999999 479999988754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.0086  Score=49.41  Aligned_cols=39  Identities=23%  Similarity=0.477  Sum_probs=36.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      +|++.||+++|+|+.|.-++++|...|.+++.++|.+=+
T Consensus        23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            789999999999999999999999999999999997644

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.083  Score=42.82  Aligned_cols=38  Identities=24%  Similarity=0.454  Sum_probs=31.8

Q ss_pred             HHhcCcEEEEc-CChHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy2302          14 HIRTLTVIVVG-VGGVGSVTAEMLTRCGI-GKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG-~GglGs~va~~La~~Gv-g~i~lvD~D~   51 (292)
                      ++++++|+|.| .|-+|+++++.|...|. .+++++..+.
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            57889999996 58899999999999885 6899887543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.0092  Score=46.55  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=27.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ...+|+|+|+|++|...++.+-..|...+ ++|.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~~   62 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFTT   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccch-hhcc
Confidence            35679999999999999999989998776 5664

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.73  E-value=0.014  Score=43.06  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=28.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+||+|+|.|.+|.++|..|++.|. +++|++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~   53 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFAR   53 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc-cceeeeh
Confidence            4789999999999999999999985 5888874

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.72  E-value=0.042  Score=45.45  Aligned_cols=37  Identities=19%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             HHhcCcEEEEcC-C--hHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGV-G--GVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~-G--glGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .|++|+|+|.|+ |  |+|.++|+.|++.|. ++.+.+.|.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCCh
Confidence            378999999996 4  599999999999996 688877554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.69  E-value=0.064  Score=45.85  Aligned_cols=36  Identities=17%  Similarity=0.098  Sum_probs=30.0

Q ss_pred             HhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          15 IRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        15 L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+++||+|.|+. -+|++++..|...|. ++..+|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            689999999855 599999999999997 577777543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.041  Score=45.36  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|+|.|++   |+|.++|+.|++.|.. +.+.|.
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~   39 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQ   39 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeC
Confidence            3789999999875   6999999999999966 777764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.64  E-value=0.055  Score=42.12  Aligned_cols=32  Identities=19%  Similarity=0.248  Sum_probs=26.6

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      +.+|+|.| +|++|..+++.+...|...+.+++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~   58 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAG   58 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeec
Confidence            46888877 599999999999999987776654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.018  Score=42.75  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=28.7

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+||+|+|.|-+|.++|..|++.|. ++++++.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~   53 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIR   53 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEee
Confidence            3799999999999999999999996 5888775

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.62  E-value=0.015  Score=44.46  Aligned_cols=33  Identities=24%  Similarity=0.540  Sum_probs=29.2

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +||.||| +|-.|+.+|++|.+.|. +++++|.+.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEeccccc
Confidence            6999999 99999999999999998 588887654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.58  E-value=0.04  Score=42.35  Aligned_cols=24  Identities=17%  Similarity=0.309  Sum_probs=21.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGI   41 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gv   41 (292)
                      .||.|+|+ |.+|+.++..|+..++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~   28 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSV   28 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHh
Confidence            48999995 9999999999987665

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.58  E-value=0.051  Score=42.51  Aligned_cols=79  Identities=19%  Similarity=0.252  Sum_probs=47.1

Q ss_pred             CcEEEEcCChHHH--HHHHHHHHh---CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHH----HHHhhCCCCeE
Q psy2302          18 LTVIVVGVGGVGS--VTAEMLTRC---GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARI----TLQNINPDVTI   88 (292)
Q Consensus        18 ~~V~vvG~GglGs--~va~~La~~---Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~----~l~~~np~v~v   88 (292)
                      .||.|+|+|++|.  .++..+...   .+++|.|+|-|.                ++.|.+++..    .....+..+++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e----------------~~~~~~~~d~~~~~~~~~~~~~~~~   65 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE----------------GKEKLEIVGALAKRMVEKAGVPIEI   65 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG----------------GHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc----------------cHHHHHHHHHHHHHHHHhcCCCcee
Confidence            4899999997764  444444433   246999988543                1223333332    23445666777


Q ss_pred             EEEeccccchhhHHHHHhcCCCCCCCcceEEeccCCHH
Q psy2302          89 EVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNFE  126 (292)
Q Consensus        89 ~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~  126 (292)
                      .....      ..+. +       .++|+||.+.....
T Consensus        66 ~~~td------~~~a-l-------~gaDvVv~ta~~~~   89 (169)
T d1s6ya1          66 HLTLD------RRRA-L-------DGADFVTTQFRVGG   89 (169)
T ss_dssp             EEESC------HHHH-H-------TTCSEEEECCCTTH
T ss_pred             eecCC------chhh-c-------CCCCEEEEccccCC
Confidence            66542      2222 2       78999999987643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.56  E-value=0.024  Score=46.89  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .|++++++|.|++ |+|.++|+.|++.|. ++.+.|.+.
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~   41 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGS   41 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            4788899998776 799999999999995 688888654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.56  E-value=0.019  Score=46.36  Aligned_cols=35  Identities=34%  Similarity=0.593  Sum_probs=31.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|.|+|+|.+|..+|+.|...|+ ++..+|.
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~   74 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI   74 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cccCCeEEEecccccchhHHHhHhhhcc-cccccCc
Confidence            5899999999999999999999999997 4666664

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.51  E-value=0.023  Score=48.74  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|++++|+|-|.|-+|+++|+.|...|..-+.+.|.+
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~   69 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESD   69 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccc
Confidence            3678999999999999999999999998877777765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.51  E-value=0.015  Score=48.54  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +||+|||+|..|...|..|++.|. +++|+|..
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            589999999999999999999996 79999953

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.48  E-value=0.067  Score=45.07  Aligned_cols=79  Identities=24%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      +||+|.|+.| +|+++++.|...|. +++.+|       |+.|.         .+.    +++..+...-+++.+..+++
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id-------~~~~~---------~~~----~~~~~~~~~~~~~~i~~Di~   59 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFD-------NLSRK---------GAT----DNLHWLSSLGNFEFVHGDIR   59 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-------CCCST---------THH----HHHHHHHTTCCCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEE-------CCCcc---------cch----hHHHHhhccCCcEEEEcccC
Confidence            5899997655 99999999999896 577777       23321         111    12222211224455677887


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +.+.+.+.++.     .++|.||-+.
T Consensus        60 ~~~~l~~~~~~-----~~~d~Vih~a   80 (338)
T d1orra_          60 NKNDVTRLITK-----YMPDSCFHLA   80 (338)
T ss_dssp             CHHHHHHHHHH-----HCCSEEEECC
T ss_pred             CHHHHHHHHHh-----cCCceEEeec
Confidence            76777776643     3579999775

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.47  E-value=0.071  Score=44.21  Aligned_cols=104  Identities=14%  Similarity=0.121  Sum_probs=58.9

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +++||+|.|+ |-+|++++..|...|. +++.++.+.-             .....|...+.   ....+.++  ....+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~-------------~~~~~~~~~~~---~~~~~~v~--~v~~d   62 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV-------------VSNIDKVQMLL---YFKQLGAK--LIEAS   62 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC-------------SSCHHHHHHHH---HHHTTTCE--EECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCc-------------ccchhHHHHHh---hhccCCcE--EEEee
Confidence            4678999996 8899999999999994 5666543211             11112322221   11233444  45556


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccC------CH-HHHHHHHHHHHHhCCceeec
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVD------NF-EARMTINMACNQLGQTWFES  145 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d------~~-~~r~~in~~~~~~~~p~i~~  145 (292)
                      +.+.+.+...+       .+.+.++.+..      +. .....+..++...+.+++..
T Consensus        63 ~~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~  113 (312)
T d1qyda_          63 LDDHQRLVDAL-------KQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLP  113 (312)
T ss_dssp             SSCHHHHHHHH-------TTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred             cccchhhhhhc-------cCcchhhhhhhhcccccchhhhhHHHHHHHHhcCCcEEEE
Confidence            66556665555       57777777642      21 23344444444445666554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.064  Score=44.82  Aligned_cols=89  Identities=15%  Similarity=0.196  Sum_probs=54.5

Q ss_pred             HHhcCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVG-GVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~G-glGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      .|++++++|.|++ |+|.++|+.|++.|. ++.++|.+.                  .|.+.+++.+.+.. ...+..+.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~------------------~~l~~~~~~~~~~~-~~~~~~~~   70 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSK------------------ETLQKVVSHCLELG-AASAHYIA   70 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH------------------HHHHHHHHHHHHHT-CSEEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHhhhh-cccchhhh
Confidence            3888999999765 799999999999995 688887543                  24444445554444 34555555


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..++..+.....+......+...|+++...
T Consensus        71 ~d~~~~~~~~~~~~~~~~~~g~~~~li~na  100 (269)
T d1xu9a_          71 GTMEDMTFAEQFVAQAGKLMGGLDMLILNH  100 (269)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHTSCSEEEECC
T ss_pred             hhhhhHHHHHHHHHHHHHHhCCcccccccc
Confidence            555543444333222111235677776543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=94.45  E-value=0.1  Score=41.02  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEE
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGI-G-----KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEV   90 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gv-g-----~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~   90 (292)
                      .||+|+|+ |.+|+.++..|+...+ |     .|.|+|-+.                .+.|++..+-.+........-..
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~----------------~~~~l~g~~mdl~d~a~~~~~~~   88 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER----------------SFQALEGVAMELEDSLYPLLREV   88 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG----------------GHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc----------------ccchhcchhhhhcccccccccCc
Confidence            37999996 9999999999998665 3     455555332                22345555555555433222111


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccCCH
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDNF  125 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~  125 (292)
                      ..   +. +..+++        .+.|+||.+.+.+
T Consensus        89 ~~---~~-~~~~~~--------~~aDvVvi~ag~~  111 (175)
T d7mdha1          89 SI---GI-DPYEVF--------EDVDWALLIGAKP  111 (175)
T ss_dssp             EE---ES-CHHHHT--------TTCSEEEECCCCC
T ss_pred             cc---cc-cchhhc--------cCCceEEEeeccC
Confidence            11   11 233332        7899999887543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.43  E-value=0.02  Score=45.59  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=33.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .|.+++|.|+|.|.+|..+++.|...|+ ++..+|.+.
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cccCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            3789999999999999999999999998 688888654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.083  Score=40.54  Aligned_cols=86  Identities=15%  Similarity=0.161  Sum_probs=51.9

Q ss_pred             CcEEEEcCChHHHH-HHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVVGVGGVGSV-TAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vvG~GglGs~-va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .||.|||+|.+|.. .+..|... ++.-+.++|.+.                  .|+...+++.   +  +..      .
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~------------------~~~~~~~~~~---~--~~~------~   52 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTR------------------AKALPICESW---R--IPY------A   52 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSC------------------TTHHHHHHHH---T--CCB------C
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechh------------------Hhhhhhhhcc---c--ccc------c
Confidence            47999999999986 45666543 444444555432                  2333333332   1  221      1


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                         +++++++       .+.|+|+.++.+ ..+..+...+.++|++++
T Consensus        53 ---~~~~~l~-------~~~D~V~I~tp~-~~h~~~~~~al~~gk~V~   89 (164)
T d1tlta1          53 ---DSLSSLA-------ASCDAVFVHSST-ASHFDVVSTLLNAGVHVC   89 (164)
T ss_dssp             ---SSHHHHH-------TTCSEEEECSCT-THHHHHHHHHHHTTCEEE
T ss_pred             ---ccchhhh-------hhcccccccccc-hhccccccccccccceee
Confidence               3344444       579999999876 456666777788888654

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.40  E-value=0.14  Score=40.96  Aligned_cols=103  Identities=17%  Similarity=0.229  Sum_probs=65.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCCCC---CccCcC---CCCC-hHHHHHHHHHHhhCCCCeEE
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDKVELANMNR---LFFQPD---QCGL-SKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl~R---~~~~~~---diG~-~Ka~a~~~~l~~~np~v~v~   89 (292)
                      ||.|||+||-|+.++..|.+.|+.  ++..+|.|.-.+++..-   ..++.+   ..|. ...+..++...+.       
T Consensus         2 kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~-------   74 (194)
T d1w5fa1           2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES-------   74 (194)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT-------
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHH-------
Confidence            799999999999999999999985  67889998876654332   223322   1221 1222222221111       


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEeccCC-----HHHHHHHHHHHHHhCCcee
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN-----FEARMTINMACNQLGQTWF  143 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-----~~~r~~in~~~~~~~~p~i  143 (292)
                              .+.+.+.+       ++.|+||.+..=     -.+...+.+++++.+++.+
T Consensus        75 --------~~~I~~~l-------~~~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv  118 (194)
T d1w5fa1          75 --------EEKIREVL-------QDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTV  118 (194)
T ss_dssp             --------HHHHHHHT-------TTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEE
T ss_pred             --------HHHHHHHh-------cCCCeEEEEEecCCCcccchHHHHHHHHHHcCCceE
Confidence                    13444444       679998877531     2345678999999988654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.38  E-value=0.028  Score=41.08  Aligned_cols=61  Identities=15%  Similarity=0.109  Sum_probs=41.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEE
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      .++|+|||.|.+|+++|..|...|..  +++|++...        +++..  ....=++.+.+.+++.  .+++.
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~--------~iL~~--~d~~~~~~l~~~l~~~--GV~v~   82 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE--------MILRG--FDHTLREELTKQLTAN--GIQIL   82 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS--------SSSTT--SCHHHHHHHHHHHHHT--TCEEE
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc--------hhhcc--cchHHHHHHHHHHHhc--CcEEE
Confidence            36999999999999999999998874  799988522        22221  1233356666777765  34443

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.36  E-value=0.016  Score=49.99  Aligned_cols=34  Identities=24%  Similarity=0.455  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +++||+|||+|-.|..+|..|+..|. +++|++..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~   34 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQR   34 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECC
Confidence            57999999999999999999999985 78888843

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.34  E-value=0.021  Score=45.91  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-----eEEEEeCCcc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-----KLILFDYDKV   52 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-----~i~lvD~D~V   52 (292)
                      .||+|||+|-+|..+|..|++.|..     +.++++.+..
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~   40 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFT   40 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCCC
Confidence            3799999999999999999999964     6788876644

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.025  Score=52.56  Aligned_cols=46  Identities=20%  Similarity=0.163  Sum_probs=39.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhCCCCC-CeeEEEeCCCCCeeeeec
Q psy2302         192 ASLPTTMGIVAGFLVQNALKKLLKFGEV-SWYLGYSALTDFFPKMKL  237 (292)
Q Consensus       192 ~s~~~~~~ivasl~a~e~lk~l~g~~~~-~~~~~~d~~~~~~~~~~l  237 (292)
                      +-++++++++|+++|+|+||++++.-.| .+.+.||+......+++|
T Consensus       483 ~el~~vaA~~GGiaaQEviK~iT~qy~Pi~n~~i~dgi~~~~~~~~l  529 (529)
T d1yova1         483 AEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL  529 (529)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTCSBCCSSEEEEETTTTEEEEECC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHhcCeeccCCcEEEecCCCeeeeEeC
Confidence            4578999999999999999999996665 899999999887776654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=94.21  E-value=0.082  Score=43.93  Aligned_cols=52  Identities=25%  Similarity=0.264  Sum_probs=38.2

Q ss_pred             cEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          19 TVIVV--GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        19 ~V~vv--G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      -|+||  |.+|+|.++|+.|++.|. ++.+.|...                 ..+.+.+++.|...++...+
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~-----------------~~~~~~~~~~l~~~~~~~~~   56 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRS-----------------AAEANALSATLNARRPNSAI   56 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-----------------HHHHHHHHHHHHHHSTTCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCC-----------------HHHHHHHHHHHHhhcCCceE
Confidence            47777  557999999999999996 566666322                 24678888888888765433

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.18  E-value=0.043  Score=45.40  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D   50 (292)
                      .|+++||+|-|.|-+|+.+|+.|++ .|..-+.+.|.+
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~   65 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR   65 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETT
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCC
Confidence            6899999999999999999999985 588777776654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.025  Score=45.33  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +||.|||+|-.|+.+|..+++.|. +++++|.|.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            589999999999999999999996 588999775

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.1  Score=45.02  Aligned_cols=85  Identities=19%  Similarity=0.188  Sum_probs=46.1

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +|+|+|.| .|-+|++++..|...|. +++.+|... +..|..|            .+.+.......++  +++.+..++
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~-~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~Dl   64 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA-SSFNTER------------VDHIYQDPHTCNP--KFHLHYGDL   64 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC----------------------------------C--CEEECCCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC-cccchhh------------HHHHHhhhhhcCC--CeEEEEeec
Confidence            36677888 45599999999999985 566666421 1112222            1111122222223  455667777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+...+..     ..+|+|+.+.
T Consensus        65 ~d~~~~~~~~~~-----~~~d~v~h~a   86 (357)
T d1db3a_          65 SDTSNLTRILRE-----VQPDEVYNLG   86 (357)
T ss_dssp             SCHHHHHHHHHH-----HCCSEEEECC
T ss_pred             CCHHHHHHHHhc-----cCCCEEEEee
Confidence            776777766643     3578998875

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.15  E-value=0.023  Score=41.84  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .++|+|+|.|.+|.++|..|++.|. ++++++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc-eEEEEecc
Confidence            4799999999999999999999985 68888753

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.14  E-value=0.015  Score=43.47  Aligned_cols=87  Identities=20%  Similarity=0.165  Sum_probs=56.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +.+|+|+|+|.+|..++..|.+ .|..=+.++|+|.   +-.++.+.                      +++|.  .   
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~---~k~G~~I~----------------------Gi~V~--~---   52 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP---EKVGRPVR----------------------GGVIE--H---   52 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT---TTTTCEET----------------------TEEEE--E---
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch---HhcCCEEC----------------------CEEEe--c---
Confidence            4589999999999999987753 4566788889875   22333221                      33442  2   


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCce
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTW  142 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~  142 (292)
                        .+.+.+++.      ...++++.+...... ..|.+.|.+.|++-
T Consensus        53 --~~~l~~~~~------~~i~iai~~i~~~~~-~~I~d~l~~~gIk~   90 (126)
T d2dt5a2          53 --VDLLPQRVP------GRIEIALLTVPREAA-QKAADLLVAAGIKG   90 (126)
T ss_dssp             --GGGHHHHST------TTCCEEEECSCHHHH-HHHHHHHHHHTCCE
T ss_pred             --HHHHHHHHh------hcccEEEEeCCHHHH-HHHHHHHHHcCCCE
Confidence              244555542      467888888876544 44666778888763

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.13  E-value=0.028  Score=43.50  Aligned_cols=36  Identities=25%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D~   51 (292)
                      ++.+|+|||.|.+|.++|..|.+.|.. ++++++...
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            467999999999999999999999985 676666654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.12  E-value=0.02  Score=45.67  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +||.|||+|-+|+.+|..+++.|.. ++++|.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCH
Confidence            4799999999999999999999965 88999764

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.08  E-value=0.12  Score=38.51  Aligned_cols=69  Identities=14%  Similarity=0.172  Sum_probs=47.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          19 TVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        19 ~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      ||+|+|+ |..|..++..+...|..-+..+|.+..                                             
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------------------------------------   36 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------------------------------------   36 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------------------------------------
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------------------------------------
Confidence            7999997 999999998887766443333332110                                             


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                       +           .+..+|+|||-+-...+ ...-++|.++++|++.+
T Consensus        37 -~-----------~~~~~DVvIDFS~p~~~-~~~l~~~~~~~~p~ViG   71 (128)
T d1vm6a3          37 -E-----------ELDSPDVVIDFSSPEAL-PKTVDLCKKYRAGLVLG   71 (128)
T ss_dssp             -E-----------ECSCCSEEEECSCGGGH-HHHHHHHHHHTCEEEEC
T ss_pred             -H-----------HhccCCEEEEecCHHHH-HHHHHHHHhcCCCEEEE
Confidence             0           12578999998765444 44566888999998765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.02  E-value=0.03  Score=41.62  Aligned_cols=32  Identities=16%  Similarity=0.324  Sum_probs=28.6

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      -++++|+|.|-+|.++|..|++.|. ++++++.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~   57 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEM   57 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEe
Confidence            4689999999999999999999996 5888764

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.00  E-value=0.17  Score=38.04  Aligned_cols=32  Identities=13%  Similarity=-0.067  Sum_probs=24.5

Q ss_pred             CCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302         113 GPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus       113 ~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      .++|+|||-+.... ....-++|.++++|++.+
T Consensus        43 ~~~DvvIDFS~p~~-~~~~~~~~~~~~~~~ViG   74 (135)
T d1yl7a1          43 GNTEVVIDFTHPDV-VMGNLEFLIDNGIHAVVG   74 (135)
T ss_dssp             TTCSEEEECCCTTT-HHHHHHHHHHTTCEEEEC
T ss_pred             ccCCEEEEcccHHH-HHHHHHHHHhcCCCEEEe
Confidence            47999999986544 445567888999999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.95  E-value=0.044  Score=42.18  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=29.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...+|+|+|+|++|...++.+...| .++..+|.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~   60 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDID   60 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcC-Cccceecch
Confidence            3578999999999999999999999 578888754

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.11  Score=44.21  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=26.4

Q ss_pred             CcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .||+|.|+.| +|+.+++.|...|--++..+|.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~   33 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            3799997755 9999999999998657888774

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.90  E-value=0.041  Score=47.11  Aligned_cols=94  Identities=17%  Similarity=0.234  Sum_probs=54.4

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHN   92 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~   92 (292)
                      +|+++.++|.|+ +|+|.++|+.|++.|. ++.+.|-+. +.....|        .+.+++.+.+.+......  .....
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~d~   71 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGG-DFKGVGK--------GSSAADKVVEEIRRRGGK--AVANY   71 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCB-CTTSCBC--------CSHHHHHHHHHHHHTTCE--EEEEC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCc-hhhhhhh--------hHHHHHHHHHHHhhcccc--ccccc
Confidence            467777877765 5899999999999997 688877543 1111111        234556566666554432  22222


Q ss_pred             ccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          93 FNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        93 ~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ..   .+..++.++.....+.+.|++|...
T Consensus        72 ~~---~~~~~~~v~~~~~~~G~iDiLVnNA   98 (302)
T d1gz6a_          72 DS---VEAGEKLVKTALDTFGRIDVVVNNA   98 (302)
T ss_dssp             CC---GGGHHHHHHHHHHHTSCCCEEEECC
T ss_pred             ch---HHHHHHHHHHHHHHcCCCCEEEECC
Confidence            22   2333333332222347899999875

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.88  E-value=0.042  Score=42.96  Aligned_cols=110  Identities=17%  Similarity=0.112  Sum_probs=56.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccccc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNITL   97 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~~   97 (292)
                      -+|+|+|+|.+|+.+++.|....= .+   +...+-..|..+..+..+-+........++.+.....  .       ...
T Consensus         5 i~I~l~G~G~VG~~l~~~l~~~~~-~l---~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~--~-------~~~   71 (168)
T d1ebfa1           5 VNVAVIGAGVVGSAFLDQLLAMKS-TI---TYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTT--K-------TLP   71 (168)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCC-SS---EEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCC--B-------CCC
T ss_pred             EEEEEEeCCHHHHHHHHHHHHhHH-Hh---hhheEEEEEeeeeeecccccchHhhhhhhhhhhhccc--c-------ccc
Confidence            479999999999999999986421 11   1122233333333333222221111111222222111  1       011


Q ss_pred             hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          98 LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      .+.+.+.+..    ....+++++++.+.+....+. .+.+.|+.++.+
T Consensus        72 ~~~~~~~~~~----~~~~~vivd~t~~~~~~~~~~-~aL~~G~hVVTA  114 (168)
T d1ebfa1          72 LDDLIAHLKT----SPKPVILVDNTSSAYIAGFYT-KFVENGISIATP  114 (168)
T ss_dssp             HHHHHHHHTT----CSSCEEEEECSCCHHHHTTHH-HHHHTTCEEECC
T ss_pred             HHHHHHHhcc----CCCceEEEEecCChHHHHHHH-HHHHcCCeEEec
Confidence            1333333321    246789999999877655554 467888876654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.86  E-value=0.035  Score=40.45  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=28.7

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ..++|+|+|.|-+|.++|..|++.| .++++++.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g-~~vt~i~~   53 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATG-RRTVMLVR   53 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcc-hhheEeec
Confidence            3589999999999999999999988 55788774

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.81  E-value=0.098  Score=42.05  Aligned_cols=101  Identities=18%  Similarity=0.251  Sum_probs=65.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCCCC---CccCcC-----CC-CChH-HHHHHHHHHhhCCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDKVELANMNR---LFFQPD-----QC-GLSK-VEAARITLQNINPD   85 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl~R---~~~~~~-----di-G~~K-a~a~~~~l~~~np~   85 (292)
                      +.|.|||+||.|+.++..|.+.|+.  ++..+|.|.-.+++..-   ...++.     .. |.|. ...+++   +    
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~---e----   74 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAAL---E----   74 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHH---H----
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCCCChHHHHHHHH---H----
Confidence            5799999999999999999999974  78888998877665432   112211     11 2222 122221   1    


Q ss_pred             CeEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC-----HHHHHHHHHHHHHhCCcee
Q psy2302          86 VTIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN-----FEARMTINMACNQLGQTWF  143 (292)
Q Consensus        86 v~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-----~~~r~~in~~~~~~~~p~i  143 (292)
                                 +.+.+.+.+       ++.|+||.+..-     -..-..+.++|++.+++.+
T Consensus        75 -----------~~~~I~~~l-------~~~d~vfi~AGlGGGTGtgaapviA~~ake~g~lvv  119 (198)
T d1ofua1          75 -----------DRERISEVL-------EGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTV  119 (198)
T ss_dssp             -----------THHHHHHHH-------TTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEE
T ss_pred             -----------HHHHHHHHh-------CCCCeEEEEecCCCCccccHHHHHHHHHHHcCCCEE
Confidence                       014555555       689998877531     2344568999999988654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.76  E-value=0.032  Score=40.94  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=27.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      .++++|+|.|-+|+++|..|++.|.. ++++.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~   52 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAE-VTVLE   52 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc-eEEEE
Confidence            37899999999999999999999975 66655

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.61  E-value=0.03  Score=41.36  Aligned_cols=32  Identities=19%  Similarity=0.469  Sum_probs=28.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      -++++|+|.|-+|.++|..|++.|. ++|++..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            4699999999999999999999995 7888764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.54  E-value=0.17  Score=43.95  Aligned_cols=91  Identities=19%  Similarity=0.064  Sum_probs=55.4

Q ss_pred             cCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCc----cCcCC--CCChHHHHHHHHHHhhCCCCeEE
Q psy2302          17 TLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDYDKVELANMNRLF----FQPDQ--CGLSKVEAARITLQNINPDVTIE   89 (292)
Q Consensus        17 ~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~----~~~~d--iG~~Ka~a~~~~l~~~np~v~v~   89 (292)
                      .+||+|.|+.| +|+++++.|...| -+++.+|       |+.|..    .....  --....+.+++.-...++.  ++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iD-------nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~   70 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVD-------NLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKS--IE   70 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE-------CCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCC--CE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe-------cCCcccccccccccccccccchHHHHHHHHhhcCCC--cE
Confidence            36899998766 9999999999999 5688888       343311    01111  1112333333322233444  45


Q ss_pred             EEeccccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          90 VHNFNITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        90 ~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      .+..++++.+.+...+..     .++|+|+...
T Consensus        71 ~~~~Dl~d~~~l~~~~~~-----~~~d~ViHlA   98 (393)
T d1i24a_          71 LYVGDICDFEFLAESFKS-----FEPDSVVHFG   98 (393)
T ss_dssp             EEESCTTSHHHHHHHHHH-----HCCSEEEECC
T ss_pred             EEEccCCCHHHHHHHHHh-----hcchheeccc
Confidence            567788776777776643     3679999765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.46  E-value=0.035  Score=42.73  Aligned_cols=52  Identities=25%  Similarity=0.351  Sum_probs=40.0

Q ss_pred             CcEEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          18 LTVIVV-GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        18 ~~V~vv-G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      .||.|+ |.|++|..+|+.|++.|.. +++.+.|.                  .|++.+.+.+....+....
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~-V~l~~R~~------------------e~~~~l~~~i~~~~~~~~~   53 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSRRE------------------EKAEAKAAEYRRIAGDASI   53 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSH------------------HHHHHHHHHHHHHHSSCCE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECCH------------------HHHHHHHHHHHhcCCCceE
Confidence            379999 8999999999999999965 77766543                  4777788888776554443

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.45  E-value=0.13  Score=41.39  Aligned_cols=102  Identities=19%  Similarity=0.243  Sum_probs=62.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCCCC---CccCcCC---C---CChHHHHHHHHHHhhCCCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDKVELANMNR---LFFQPDQ---C---GLSKVEAARITLQNINPDV   86 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~V~~sNl~R---~~~~~~d---i---G~~Ka~a~~~~l~~~np~v   86 (292)
                      ++|-|||+||-|+.++..|.+.|+.  ++..+|.|.-.+++..-   .+.+...   .   |.|..  .++...+     
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~t~G~Gagg~p~~--g~~aa~e-----   74 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGAGADPEV--GRKAAED-----   74 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHHCCCSEEEECCTTTC-----CCCHHH--HHHHHHH-----
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHhcCCcchhhccccccccCCCcCcChhh--hHhhHHH-----
Confidence            4788999999999999999999984  78888888765543322   1122211   1   11221  1111111     


Q ss_pred             eEEEEeccccchhhHHHHHhcCCCCCCCcceEEeccCC-----HHHHHHHHHHHHHhCCcee
Q psy2302          87 TIEVHNFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN-----FEARMTINMACNQLGQTWF  143 (292)
Q Consensus        87 ~v~~~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-----~~~r~~in~~~~~~~~p~i  143 (292)
                                +.+.+.+.+       +++|+||.+..-     --.--.|.++|++.++..+
T Consensus        75 ----------~~~~I~~~l-------~~~d~vfi~AGlGGgTGtGaaPviA~iake~g~l~v  119 (198)
T d1rq2a1          75 ----------AKDEIEELL-------RGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTV  119 (198)
T ss_dssp             ----------THHHHHHHH-------TTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEE
T ss_pred             ----------HHHHHHHHh-------cCCCEEEEEEecCCCCCcchHHHHHHHHHHcCCcEE
Confidence                      114444555       689998877531     2344678899999987654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.42  E-value=0.094  Score=44.93  Aligned_cols=81  Identities=16%  Similarity=0.008  Sum_probs=50.2

Q ss_pred             cCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +++|+|.|+.| +|+++++.|...|..-+.+++.                   ..|..-+.+......+.-.......++
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl   71 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS-------------------ASKLANLQKRWDAKYPGRFETAVVEDM   71 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-------------------HHHHHHHHHHHHHHSTTTEEEEECSCT
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC-------------------chhHHHHHHhhhccccccccEEEeccc
Confidence            68999998887 9999999999998653333321                   123444444444444444444555556


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      .+...+...       +.++|.|+....
T Consensus        72 ~~~~~~~~~-------~~~~~~v~~~a~   92 (342)
T d1y1pa1          72 LKQGAYDEV-------IKGAAGVAHIAS   92 (342)
T ss_dssp             TSTTTTTTT-------TTTCSEEEECCC
T ss_pred             cchhhhhhh-------cccchhhhhhcc
Confidence            554444333       367888886653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.40  E-value=0.027  Score=43.02  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=27.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +||+|||.|.+|.++|..|.+ + .++++++...
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-T-YEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-C-CCEEEEeccc
Confidence            589999999999999999976 3 4899997543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.36  E-value=0.037  Score=45.71  Aligned_cols=36  Identities=31%  Similarity=0.488  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|++++|+|-|.|.+|+++|+.|...| .+++.+|.|
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~G-akvv~~d~~   71 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEG-AKLVVTDVN   71 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEeeccc
Confidence            378899999999999999999999999 456677654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.035  Score=45.78  Aligned_cols=33  Identities=30%  Similarity=0.503  Sum_probs=29.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.+||+|||+|--|-..|..|++.|. +++|+..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            46789999999999999999999998 6888763

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.28  E-value=0.12  Score=42.26  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=57.8

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++||+|.|+ |-+|+.++..|...|. +++.++.+.-...+            ..|..... .  ...+.++  .....+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~~~~------------~~~~~~~~-~--~~~~~~~--~~~~d~   64 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSN------------SEKAQLLE-S--FKASGAN--IVHGSI   64 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTT------------HHHHHHHH-H--HHTTTCE--EECCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCccccc------------hhHHHHHH-h--hccCCcE--EEEeec
Confidence            689999997 8999999999999996 56666643211100            01222111 1  1233444  344555


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEeccCCHH--HHHHHHHHHHHhCCce
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCVDNFE--ARMTINMACNQLGQTW  142 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~--~r~~in~~~~~~~~p~  142 (292)
                      .........+       ...+.|+.+.....  ....+.+++...+...
T Consensus        65 ~~~~~~~~~~-------~~~~~vi~~~~~~~~~~~~~~~~a~~~~~~~~  106 (307)
T d1qyca_          65 DDHASLVEAV-------KNVDVVISTVGSLQIESQVNIIKAIKEVGTVK  106 (307)
T ss_dssp             TCHHHHHHHH-------HTCSEEEECCCGGGSGGGHHHHHHHHHHCCCS
T ss_pred             ccchhhhhhh-------hhceeeeecccccccchhhHHHHHHHHhcccc
Confidence            5544444444       46788887765432  2234455666665543

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=93.17  E-value=0.16  Score=40.21  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=28.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      |+++++|+|+||.|..+...+-..+...+.++|+
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd   34 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDD   34 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTCCEEEECCC
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcC
Confidence            5789999999999999999999999988888775

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.17  E-value=0.092  Score=41.65  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      +..++|+|+|+|-+|...+....++|. +++++|-+.-
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~   63 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAA   63 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCST
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHH
Confidence            356899999999999999999999996 7999996543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.12  E-value=0.044  Score=44.65  Aligned_cols=93  Identities=13%  Similarity=0.104  Sum_probs=52.6

Q ss_pred             cCcEEEEcCChHHH-HHHHHHHHh-CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC-CCCeEEEEec
Q psy2302          17 TLTVIVVGVGGVGS-VTAEMLTRC-GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN-PDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG~GglGs-~va~~La~~-Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n-p~v~v~~~~~   93 (292)
                      .-||.|||+|..|. .++..|... ++.-+.++|.+.                  .|++.+++   +.+ +..++..+  
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~------------------~~a~~~~~---~~~i~~~~~~~~--   89 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNA------------------EKAKIVAA---EYGVDPRKIYDY--   89 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCH------------------HHHHHHHH---HTTCCGGGEECS--
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCH------------------HHHHHHHH---hhcccccccccc--
Confidence            45899999999996 466666554 333333555432                  23333333   222 11222222  


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCcee
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i  143 (292)
                           .+++++++.     .+.|+|+.++.+. .+..+...+.++|++++
T Consensus        90 -----~d~~ell~~-----~~iD~V~I~tp~~-~H~~~~~~al~~gk~v~  128 (221)
T d1h6da1          90 -----SNFDKIAKD-----PKIDAVYIILPNS-LHAEFAIRAFKAGKHVM  128 (221)
T ss_dssp             -----SSGGGGGGC-----TTCCEEEECSCGG-GHHHHHHHHHHTTCEEE
T ss_pred             -----Cchhhhccc-----ccceeeeeccchh-hhhhHHHHhhhcchhhh
Confidence                 234444432     5789999888774 44555666777888664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.08  E-value=0.18  Score=38.27  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=28.0

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+.+|+|.|+|++|...+..+...|. ++.++|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~   59 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI   59 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccCC
Confidence            46789999999999999888888887 6777664

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.02  E-value=0.033  Score=45.35  Aligned_cols=30  Identities=33%  Similarity=0.412  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +|+|||+|..|...|..|++.|. +++|++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~   31 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLES   31 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            79999999999999999999998 5899884

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.89  E-value=0.039  Score=47.36  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D   50 (292)
                      +||+|||+|..|..+|..|.+.|.+ +++|++-.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            5899999999999999999998874 78888855

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.80  E-value=0.07  Score=41.39  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D~   51 (292)
                      +++|+|||.|.+|.++|..|.+.|.. +++++....
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~   38 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   38 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEeccc
Confidence            57899999999999999999999975 666665443

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.70  E-value=0.3  Score=38.13  Aligned_cols=30  Identities=23%  Similarity=0.304  Sum_probs=24.7

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      ++|+|.| .|.+|+++++.|...|.. ++++|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~-v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDK-FVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTT-CEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCc-EEEEE
Confidence            5899998 599999999999999853 44544

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=92.64  E-value=0.21  Score=38.32  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=53.4

Q ss_pred             cCcEEEEcCChHHHHH-HHHHHHhCCCeEEEEeC-CcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVGVGGVGSVT-AEMLTRCGIGKLILFDY-DKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG~GglGs~v-a~~La~~Gvg~i~lvD~-D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .-||.|||+|++|... .+.|-.....++..+=+ +.               -++ +...+    ++.  .+.+.  .  
T Consensus         4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~---------------~~~-~~~~a----~~~--~i~~~--~--   57 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDA---------------ASD-GLARA----QRM--GVTTT--Y--   57 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCT---------------TCH-HHHHH----HHT--TCCEE--S--
T ss_pred             CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecch---------------hcc-chhhh----hhc--CCccc--c--
Confidence            3489999999999975 56665555666655421 11               011 11111    122  22221  1  


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCCH-HHHHHHHHHHHHhCCceeecCc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDNF-EARMTINMACNQLGQTWFESGV  147 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~-~~r~~in~~~~~~~~p~i~~~~  147 (292)
                          +.++++++..  .+.+.|+|+.||.+. .......-.+.+.|+.+|+-..
T Consensus        58 ----~~~d~l~~~~--~~~~iDiVf~ATpag~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          58 ----AGVEGLIKLP--EFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             ----SHHHHHHHSG--GGGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred             ----cceeeeeecc--cccccCEEEEcCCchhHHHhHHHHHHHHcCCEEEEccc
Confidence                2333333221  125799999998864 3443333444577888887644

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.64  E-value=0.038  Score=45.96  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|+++||+|-|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc
Confidence            5789999999999999999999999997766666643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.64  E-value=0.051  Score=42.70  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      -|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~~   37 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGK-KVLHIDKQ   37 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcCC
Confidence            48999999999999999999996 68888863

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.52  E-value=0.22  Score=39.05  Aligned_cols=91  Identities=13%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             CcEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTVIVV--GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V~vv--G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      .+|+|+  |.|++|....+..-..|+..|.++..+.                   +.+-..++++++-.+.-+.......
T Consensus        30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~-------------------~~~~~~~~~~~lGad~vi~~~~~~~   90 (189)
T d1gu7a2          30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP-------------------NLDEVVASLKELGATQVITEDQNNS   90 (189)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT-------------------THHHHHHHHHHHTCSEEEEHHHHHC
T ss_pred             CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccc-------------------ccchHHhhhhhccccEEEeccccch
Confidence            478998  5688999999998899998888775422                   3444556666665443333211111


Q ss_pred             cc-hhhHHHHHhcCCCCCCCcceEEeccCCHHHHHH
Q psy2302          96 TL-LRKVGALAVQGSLTEGPVDLVLSCVDNFEARMT  130 (292)
Q Consensus        96 ~~-~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~  130 (292)
                      .. .+.+.++....   ..++|+|+|++........
T Consensus        91 ~~~~~~v~~~~~~~---g~~vdvv~D~vg~~~~~~~  123 (189)
T d1gu7a2          91 REFGPTIKEWIKQS---GGEAKLALNCVGGKSSTGI  123 (189)
T ss_dssp             GGGHHHHHHHHHHH---TCCEEEEEESSCHHHHHHH
T ss_pred             hHHHHHHHHHHhhc---cCCceEEEECCCcchhhhh
Confidence            11 01122222111   1579999999986655443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.52  E-value=0.69  Score=39.67  Aligned_cols=93  Identities=19%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             CcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhC------CCCeEEE
Q psy2302          18 LTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNIN------PDVTIEV   90 (292)
Q Consensus        18 ~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~n------p~v~v~~   90 (292)
                      .||+|.|+.| +|+++++.|.+.+=-+++.+|.       +.|- ....+.-..+..... .+....      .+..+..
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~-------l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   73 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS-------LVGT-HGKSDHVETRENVAR-KLQQSDGPKPPWADRYAAL   73 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC-------CTTT-TTCCTTSCCHHHHHH-HHHHSCSSCCTTTTCCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec-------CCcc-cccchhhhhhhhHHH-HhhhhccccccccccceEE
Confidence            5899997655 9999999998755457889883       3321 111222333333332 222211      1223556


Q ss_pred             EeccccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          91 HNFNITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        91 ~~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      +..++++.+.+++.++.    ..++|+|+-+..
T Consensus        74 ~~~Di~d~~~l~~~~~~----~~~~d~ViH~Aa  102 (383)
T d1gy8a_          74 EVGDVRNEDFLNGVFTR----HGPIDAVVHMCA  102 (383)
T ss_dssp             EESCTTCHHHHHHHHHH----SCCCCEEEECCC
T ss_pred             EECcccCHHHhhhhhhc----cceeehhhcccc
Confidence            66777776677776643    246899997763

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.49  E-value=0.24  Score=38.36  Aligned_cols=38  Identities=24%  Similarity=0.415  Sum_probs=34.0

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      -|..++|+|+|-|-+|.-+|+.|...|. ++++++-|.+
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi   57 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPI   57 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCch
Confidence            3678899999999999999999999996 6888888875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.39  E-value=0.19  Score=39.03  Aligned_cols=38  Identities=29%  Similarity=0.471  Sum_probs=33.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      .|..++|+|+|.|-+|..+|+.|...|. ++++.|.|.+
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~   58 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPI   58 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccc
Confidence            4678999999999999999999999994 5888888774

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.37  E-value=0.054  Score=44.79  Aligned_cols=31  Identities=39%  Similarity=0.582  Sum_probs=28.0

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      |+|||+|-.|+.+|..|++.|. +++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8999999999999999999996 688998643

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.36  E-value=0.059  Score=43.32  Aligned_cols=35  Identities=29%  Similarity=0.498  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|.+++|.|+|.|.+|..+|+.|...|+. +..+|+
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   76 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDP   76 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             cccceeeeeeeccccccccccccccccee-eeccCC
Confidence            57889999999999999999999998876 555665

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.26  E-value=0.047  Score=43.74  Aligned_cols=35  Identities=29%  Similarity=0.500  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|.|+|+|.+|..+|+.|...|+. +...|+
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   80 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDP   80 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECT
T ss_pred             eeeCceEEEeccccccccceeeeeccccc-eeeccC
Confidence            47889999999999999999999988865 555665

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.13  Score=43.70  Aligned_cols=76  Identities=21%  Similarity=0.255  Sum_probs=50.4

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      +++++|+-|||| .| .++..++++|..+++.+|...                   .+..+++..++.+-.-+++....+
T Consensus        34 ~~~~~VLDiGcG-~G-~lsl~aa~~Ga~~V~aid~s~-------------------~~~~a~~~~~~~~~~~~i~~~~~~   92 (311)
T d2fyta1          34 FKDKVVLDVGCG-TG-ILSMFAAKAGAKKVLGVDQSE-------------------ILYQAMDIIRLNKLEDTITLIKGK   92 (311)
T ss_dssp             TTTCEEEEETCT-TS-HHHHHHHHTTCSEEEEEESST-------------------HHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CCcCEEEEECCC-CC-HHHHHHHHcCCCEEEEEeCHH-------------------HHHHHHHHHHHhCCCccceEEEee
Confidence            468899999999 34 367788999999999988531                   344455555555555567766655


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEec
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSC  121 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a  121 (292)
                      +.+..          .....+|+|+..
T Consensus        93 ~~~l~----------~~~~~~D~Ivse  109 (311)
T d2fyta1          93 IEEVH----------LPVEKVDVIISE  109 (311)
T ss_dssp             TTTSC----------CSCSCEEEEEEC
T ss_pred             HHHhc----------CccccceEEEEe
Confidence            44211          012589999863

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.00  E-value=0.039  Score=44.33  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCC------eEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIG------KLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg------~i~lvD~D   50 (292)
                      ..||+|||+|.-|-..|..|++.|..      +++|+|..
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecC
Confidence            35899999999999999999999952      68998863

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=91.96  E-value=0.032  Score=47.84  Aligned_cols=39  Identities=18%  Similarity=0.321  Sum_probs=34.4

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHh----------CCCeEEEEeCCcc
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRC----------GIGKLILFDYDKV   52 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~----------Gvg~i~lvD~D~V   52 (292)
                      +|++.||+|.|+|+-|..++..|+..          +.++|.++|.+=+
T Consensus        22 ~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          22 RLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            78999999999999999999999866          5679999997654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.93  E-value=0.27  Score=40.07  Aligned_cols=86  Identities=13%  Similarity=0.129  Sum_probs=50.4

Q ss_pred             EEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc--
Q psy2302          20 VIVV--GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI--   95 (292)
Q Consensus        20 V~vv--G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i--   95 (292)
                      |+||  |.+|+|..+|+.|++.|. ++.+.|.+.                 ..+.+.+.+.+.+..+.-.+.......  
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHS-----------------EGAAQRLVAELNAARAGSAVLCKGDLSLS   64 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-----------------HHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCc-----------------hHHHHHHHHHHHhhcCCceEEEecccccc
Confidence            5555  556899999999999996 788888432                 124566777777776554433322111  


Q ss_pred             -cchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          96 -TLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        96 -~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                       +..+.+.++++.....+...|++|.+..
T Consensus        65 ~~~~~~~~~~~~~~~~~~g~iDilvnnAG   93 (266)
T d1mxha_          65 SSLLDCCEDIIDCSFRAFGRCDVLVNNAS   93 (266)
T ss_dssp             TTHHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             hhHHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence             1112222222211112367888887653

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.89  E-value=0.069  Score=41.50  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=25.1

Q ss_pred             CCcceEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302         113 GPVDLVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus       113 ~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                      ..+|+|||-+.. ++....-++|.++++|++.+
T Consensus        70 ~~~DViIDFs~p-~~~~~~~~~a~~~~~~~ViG  101 (162)
T d1diha1          70 DDFDVFIDFTRP-EGTLNHLAFCRQHGKGMVIG  101 (162)
T ss_dssp             TSCSEEEECSCH-HHHHHHHHHHHHTTCEEEEC
T ss_pred             cccceEEEeccH-HHHHHHHHHHHhccceeEEe
Confidence            689999998665 44445567999999999865

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.86  E-value=0.098  Score=42.99  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=48.7

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIG-KLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg-~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      .++|+|.| .+|+|.++|+.|++.|.. ++.+.+.+.      .            |.    +.+++.. .-+++.+..+
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~------~------------~~----~~l~~~~-~~~~~~~~~D   59 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV------E------------KA----TELKSIK-DSRVHVLPLT   59 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG------G------------GC----HHHHTCC-CTTEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH------H------------HH----HHHHHhh-CCceEEEEEe
Confidence            46777765 569999999999999974 566655332      1            11    1233333 2356677777


Q ss_pred             ccchhhHHHHHhcCCCCC--CCcceEEecc
Q psy2302          95 ITLLRKVGALAVQGSLTE--GPVDLVLSCV  122 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~--~~~DlVv~a~  122 (292)
                      +++.+.++++++.-...+  .+.|++|.+.
T Consensus        60 vs~~~~v~~~~~~i~~~~~~~~idilinnA   89 (250)
T d1yo6a1          60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNA   89 (250)
T ss_dssp             TTCHHHHHHHHHHHHHHHGGGCCCEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence            776555554433211111  2478888765

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.79  E-value=0.092  Score=40.25  Aligned_cols=31  Identities=32%  Similarity=0.488  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEE
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILF   47 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lv   47 (292)
                      .++|+|||.|-+|..+|..+.|.|..+++++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            5689999999999999999999999999886

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.79  E-value=0.1  Score=40.95  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG-KLILFDYD   50 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg-~i~lvD~D   50 (292)
                      .||+|||.|.+|.++|..|.+.+-+ ++++++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3799999999999999999999875 79999854

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.72  E-value=0.13  Score=42.21  Aligned_cols=30  Identities=30%  Similarity=0.527  Sum_probs=23.8

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .||+|.|+ |-+|+.+++.|...|  +...+|.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g--~~v~~~~   31 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG--NLIALDV   31 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS--EEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CEEEEEC
Confidence            37999986 889999999998765  5665553

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.72  E-value=0.12  Score=37.31  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=28.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI--GKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv--g~i~lvD~   49 (292)
                      .++|+|||.|.+|.++|..|++.+-  .++++++.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~   52 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR   52 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecc
Confidence            3799999999999999999988753  47888875

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=1.3  Score=37.08  Aligned_cols=87  Identities=18%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      ++||+|.| .|-+|+++++.|...|. +++.+|.       +.+........-. +    .+++..+. .-++..+..++
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~-------~~~~~~~~~~~~~-~----~~~~~~~~-~~~~~~~~~Dl   67 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN-------FHNAFRGGGSLPE-S----LRRVQELT-GRSVEFEEMDI   67 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC-------SSSSCBCSSSSBH-H----HHHHHHHH-TCCCEEEECCT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC-------CCccccccccchH-H----HHHHHHhc-CCCcEEEEeec
Confidence            47999995 57799999999999995 6777774       2221111111111 1    12233221 22345566777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+...+..     ...++|+.+.
T Consensus        68 ~d~~~l~~~~~~-----~~~~~i~h~A   89 (346)
T d1ek6a_          68 LDQGALQRLFKK-----YSFMAVIHFA   89 (346)
T ss_dssp             TCHHHHHHHHHH-----CCEEEEEECC
T ss_pred             cccccccccccc-----cccccccccc
Confidence            776666665533     4566776443

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.17  Score=37.61  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=27.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHH----hCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTR----CGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~----~Gvg~i~lvD~D~   51 (292)
                      .++|+|||.|.+|.++|..|++    .|+ ++++++...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccc
Confidence            5689999999999999999975    454 788887633

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=91.59  E-value=0.3  Score=37.63  Aligned_cols=35  Identities=17%  Similarity=0.434  Sum_probs=25.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRC-GIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~-Gvg~i~lvD~D   50 (292)
                      ++-||.|+|+|.+|...+..|... ++.-..++|.+
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~   37 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecc
Confidence            345899999999999999998864 33334444443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.56  E-value=0.13  Score=39.72  Aligned_cols=32  Identities=38%  Similarity=0.476  Sum_probs=25.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhC-CCeEEEEeC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCG-IGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~G-vg~i~lvD~   49 (292)
                      -+|+|||+|..|...+..|.+.. +..+.++|.
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~   40 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF   40 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            37999999999999988887653 456777664

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.44  E-value=0.13  Score=39.64  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=28.2

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+.+|+|+|+|++|...++.+...|. +++.+|.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~   59 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISR   59 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccc-ccccccc
Confidence            46899999999999999998889998 5667775

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.37  Score=40.44  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=26.4

Q ss_pred             cCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++||+|.|+.| +|++++..|...|. +++.+|.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            47999998766 99999999999985 4667763

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.37  E-value=0.084  Score=42.70  Aligned_cols=31  Identities=32%  Similarity=0.440  Sum_probs=27.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      -|+|||+|..|...|..|++.|. +++|+|..
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~-~V~liEk~   34 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG   34 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            58999999999999999999997 68888854

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=91.37  E-value=0.031  Score=48.07  Aligned_cols=40  Identities=20%  Similarity=0.330  Sum_probs=34.3

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCC----------CeEEEEeCCcc
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGI----------GKLILFDYDKV   52 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gv----------g~i~lvD~D~V   52 (292)
                      ++|.+.||+|.|+|+-|..++++|+.+++          ++|.++|.+=+
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            37889999999999999999999997733          47999997654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.15  Score=39.89  Aligned_cols=44  Identities=20%  Similarity=0.296  Sum_probs=34.9

Q ss_pred             ccccCChHHHHHHHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302           2 ALKRMGIVENYEHIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus         2 ~l~~~G~~~~q~~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +|++.|+     .|++++|+|||-+. +|-.++.+|+..| ..++++|.++
T Consensus        29 lL~~~~i-----~l~Gk~vvVIGrS~iVGrPLa~lL~~~g-atVt~~~~~t   73 (170)
T d1a4ia1          29 LIKETGV-----PIAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHSKT   73 (170)
T ss_dssp             HHHTTTC-----CCTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTC
T ss_pred             HHHHhCc-----ccccceEEEEecCCccchHHHHHHHhcc-CceEEEeccc
Confidence            3566777     78999999999987 8999999999887 4577766433

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.14  E-value=0.076  Score=41.71  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=29.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .+++|+|||.|..|...|.+|+|.|.. ..++|...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeec
Confidence            357899999999999999999999986 55667443

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.99  E-value=0.82  Score=38.77  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=27.6

Q ss_pred             hcCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ++.||+|.| .|-+|++++..|...|. +++.+|.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            588999996 67799999999999985 5667763

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.036  Score=47.42  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=34.7

Q ss_pred             HHHhcCcEEEEcCChHHHHHHHHHHHhCC----------CeEEEEeCCcc
Q psy2302          13 EHIRTLTVIVVGVGGVGSVTAEMLTRCGI----------GKLILFDYDKV   52 (292)
Q Consensus        13 ~~L~~~~V~vvG~GglGs~va~~La~~Gv----------g~i~lvD~D~V   52 (292)
                      ++|.+.||++.|+|+-|..++..|..+++          ++|.++|.+=+
T Consensus        21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            37899999999999999999999987765          48999997653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.63  E-value=0.13  Score=41.90  Aligned_cols=35  Identities=26%  Similarity=0.512  Sum_probs=30.5

Q ss_pred             HhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          15 IRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        15 L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      |++++|+|.|+ +|+|.++|+.|++.|. ++.+.|.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~   37 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARN   37 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            67899999986 7899999999999996 68888864

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.61  E-value=0.19  Score=39.49  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHh
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRC   39 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~   39 (292)
                      ||.|.|.|.+|..+++.|...
T Consensus         3 KVaINGfGRIGR~v~Ral~~~   23 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQ   23 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHhC
Confidence            799999999999999999864

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=90.57  E-value=0.1  Score=41.25  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|.+++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRH   76 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSS
T ss_pred             eccccceeeccccccchhhhhhhhccCce-EEEEeec
Confidence            46789999999999999999999988874 6666654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.76  Score=38.28  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=55.4

Q ss_pred             CcEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhh-CCCCeEEEEecc
Q psy2302          18 LTVIVV--GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNI-NPDVTIEVHNFN   94 (292)
Q Consensus        18 ~~V~vv--G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~-np~v~v~~~~~~   94 (292)
                      +||+||  |.+|+|.++|+.|++.|..-+.+.-..    .|+.            +.+.+.+.++++ .+..++..+..+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~----~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~D   65 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATL----RDLK------------TQGRLWEAARALACPPGSLETLQLD   65 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEE----SCGG------------GTHHHHHHHHHTTCCTTSEEEEECC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEec----CChh------------hhHHHHHHHHHHhccCCceEEEecc
Confidence            678776  467999999999999997644332110    0111            112233333333 345678888889


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +++.+.....++...  ....|+++...
T Consensus        66 v~~~~~~~~~~~~~~--~g~idilvnna   91 (285)
T d1jtva_          66 VRDSKSVAAARERVT--EGRVDVLVCNA   91 (285)
T ss_dssp             TTCHHHHHHHHHTCT--TSCCSEEEECC
T ss_pred             ccchHhhhhhhhhcc--ccchhhhhhcc
Confidence            988788877766533  25789988776

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.89  Score=38.07  Aligned_cols=85  Identities=15%  Similarity=0.108  Sum_probs=46.7

Q ss_pred             CcE-EEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          18 LTV-IVVGVGG-VGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        18 ~~V-~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +|| +|.|+.| +|++++..|...|. +++.+|...- ..|..|.    +.+....         +.+..-.++.+..++
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~~-~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~Dl   65 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRSS-SFNTGRI----EHLYKNP---------QAHIEGNMKLHYGDL   65 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS-SCCCTTT----GGGC------------------CEEEEECCT
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCCc-ccchhhH----HHHhhch---------hhhccCCcEEEEeec
Confidence            588 7887776 99999999999996 5666775321 1122221    0111100         111123466677777


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      ++.+.+..++..     .++++|+.+.
T Consensus        66 ~d~~~~~~~~~~-----~~~~~v~~~~   87 (347)
T d1t2aa_          66 TDSTCLVKIINE-----VKPTEIYNLG   87 (347)
T ss_dssp             TCHHHHHHHHHH-----HCCSEEEECC
T ss_pred             CCchhhHHHHhh-----cccceeeeee
Confidence            766666655532     3556666443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.31  E-value=0.47  Score=40.42  Aligned_cols=77  Identities=19%  Similarity=0.225  Sum_probs=54.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      .+++++|+-||||. | .++..+++.|..+++.+|...                   .++.+++..++.+-.-+++....
T Consensus        36 ~~~~~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~s~-------------------~~~~a~~~~~~~~~~~~i~~i~~   94 (328)
T d1g6q1_          36 LFKDKIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDMSS-------------------IIEMAKELVELNGFSDKITLLRG   94 (328)
T ss_dssp             HHTTCEEEEETCTT-S-HHHHHHHHTCCSEEEEEESST-------------------HHHHHHHHHHHTTCTTTEEEEES
T ss_pred             cCCcCEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeCCH-------------------HHHHHHHHHHHhCccccceEEEe
Confidence            35889999999995 4 456788999999999988532                   45667777777776667777776


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEec
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSC  121 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a  121 (292)
                      ++.+..          ..-..+|+|+..
T Consensus        95 ~~~~l~----------~~~~~~D~i~se  112 (328)
T d1g6q1_          95 KLEDVH----------LPFPKVDIIISE  112 (328)
T ss_dssp             CTTTSC----------CSSSCEEEEEEC
T ss_pred             ehhhcc----------CcccceeEEEEE
Confidence            554311          011579999864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.12  Score=43.16  Aligned_cols=29  Identities=31%  Similarity=0.609  Sum_probs=27.3

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      |+|||+|-.|-..|..|++.|. +++|++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            8999999999999999999998 7999985

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=1  Score=37.83  Aligned_cols=80  Identities=20%  Similarity=0.193  Sum_probs=49.3

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      .||+|.|. |-+|+++++.|...| -+++++|.       +.+   ...     ......+++  .++  +++.+..+++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~-------~~~---~~~-----~~~~~~~~~--~~~--~~~~~~~Dl~   60 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDN-------LCN---SKR-----SVLPVIERL--GGK--HPTFVEGDIR   60 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC-------CSS---CCT-----THHHHHHHH--HTS--CCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC-------CCC---cch-----hhHHHHHhh--cCC--CCEEEEeecC
Confidence            36999965 679999999999999 46777772       111   000     000111112  223  3445667787


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +.+.+.+.++.     .++|+||.+.
T Consensus        61 d~~~l~~~~~~-----~~~d~ViHlA   81 (338)
T d1udca_          61 NEALMTEILHD-----HAIDTVIHFA   81 (338)
T ss_dssp             CHHHHHHHHHH-----TTCSEEEECC
T ss_pred             CHHHHHHHHhc-----cCCCEEEECC
Confidence            77777777643     4789999754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=90.27  E-value=0.65  Score=35.44  Aligned_cols=32  Identities=19%  Similarity=0.155  Sum_probs=24.1

Q ss_pred             cCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.+|+|.|+|| +|..+++.....|.. ++.+|.
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~-Vi~~~~   61 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVG   61 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEES
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCe-Eeeccc
Confidence            56899996666 998888888888875 555553

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.09  E-value=0.13  Score=40.65  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      -|+|||+|..|...|..+++.|- +++|||.+.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccC
Confidence            38999999999999999999996 688888654

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.97  E-value=1.7  Score=36.48  Aligned_cols=103  Identities=15%  Similarity=0.117  Sum_probs=59.9

Q ss_pred             CcEEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVV-GVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vv-G~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      |.|+|. |.|-+|++++..|...|. +++.+|       |+.|..          .+.....-...++.+  +.+..+++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d-------~~~~~~----------~~~~~~~~~~~~~~v--~~~~~Dl~   61 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVAD-------NLSNST----------YDSVARLEVLTKHHI--PFYEVDLC   61 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-------CCSSCC----------THHHHHHHHHHTSCC--CEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEE-------CCCCcc----------hhHHHhHHhhcccCC--eEEEeecC
Confidence            456666 556899999999999995 577776       222211          111111111123334  45566777


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEeccCCH-----------------HHHHHHHHHHHHhCCc-eeec
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCVDNF-----------------EARMTINMACNQLGQT-WFES  145 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~d~~-----------------~~r~~in~~~~~~~~p-~i~~  145 (292)
                      +.+.+...+..     .++|+|+.+....                 .....+-++|++.++. +++.
T Consensus        62 d~~~l~~~~~~-----~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~  123 (347)
T d1z45a2          62 DRKGLEKVFKE-----YKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS  123 (347)
T ss_dssp             CHHHHHHHHHH-----SCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CHHHHHHHHhc-----cCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEee
Confidence            76777766532     4799999765321                 1123456678888864 4443

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.96  E-value=1.4  Score=36.96  Aligned_cols=102  Identities=19%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCC-eEEEEeCCccccc-CCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIG-KLILFDYDKVELA-NMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg-~i~lvD~D~V~~s-Nl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      -+||+|.| .|-+|+.++..|...|-. +++.+|.  ++.+ +..                   ++..+. .-+++.+..
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~--~~~~~~~~-------------------~~~~~~-~~~i~~~~~   59 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK--LTYAGNKA-------------------NLEAIL-GDRVELVVG   59 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC--CCTTCCGG-------------------GTGGGC-SSSEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC--CCccccHH-------------------HHHHhh-cCCeEEEEc
Confidence            36899997 677999999999999854 4556662  1111 111                   111111 224566667


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCH-----------------HHHHHHHHHHHHhCCceeecCc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNF-----------------EARMTINMACNQLGQTWFESGV  147 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~-----------------~~r~~in~~~~~~~~p~i~~~~  147 (292)
                      ++.+.+.+..++       ..+|.|+......                 .....+-+.|.+.+..++..+.
T Consensus        60 Di~d~~~~~~~~-------~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss  123 (346)
T d1oc2a_          60 DIADAELVDKLA-------AKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST  123 (346)
T ss_dssp             CTTCHHHHHHHH-------TTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             cCCCHHHHHHHH-------hhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcccccccccccc
Confidence            777666666665       4566665543211                 1123344677888887766543

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.81  E-value=0.14  Score=42.36  Aligned_cols=37  Identities=19%  Similarity=0.388  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D   50 (292)
                      .|++++|+|-|.|.+|+.+|+.|.. .|..-+.+.|.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            4788999999999999999999986 577777777754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.65  E-value=0.18  Score=39.65  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .-|+|||.|..|...|..+++.|. +.+||+.+.
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCC
Confidence            458999999999999999999996 688888654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.52  E-value=0.96  Score=31.04  Aligned_cols=83  Identities=19%  Similarity=0.179  Sum_probs=52.8

Q ss_pred             cCcEEEEcCChHHH-HHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          17 TLTVIVVGVGGVGS-VTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        17 ~~~V~vvG~GglGs-~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +.||-++|.||+|- .+|..|...|. +++--|-..                  +   ...++|++..  +++..-.   
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~------------------~---~~t~~L~~~G--i~i~~gh---   53 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEE------------------T---ERTAYLRKLG--IPIFVPH---   53 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSC------------------C---HHHHHHHHTT--CCEESSC---
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCC------------------C---hhHHHHHHCC--CeEEeee---
Confidence            46899999999996 78999999997 566655211                  1   1223465553  5553111   


Q ss_pred             cchhhHHHHHhcCCCCCCCcceEEecc----CCHHHHHHHHHHHHHhCCcee
Q psy2302          96 TLLRKVGALAVQGSLTEGPVDLVLSCV----DNFEARMTINMACNQLGQTWF  143 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~DlVv~a~----d~~~~r~~in~~~~~~~~p~i  143 (292)
                       +.++           +.+.|+||-+.    ||++.     .++++.|+|++
T Consensus        54 -~~~~-----------i~~~d~vV~SsAI~~~npel-----~~A~~~gIpv~   88 (89)
T d1j6ua1          54 -SADN-----------WYDPDLVIKTPAVRDDNPEI-----VRARMERVPIE   88 (89)
T ss_dssp             -CTTS-----------CCCCSEEEECTTCCTTCHHH-----HHHHHTTCCEE
T ss_pred             -cccc-----------cCCCCEEEEecCcCCCCHHH-----HHHHHcCCCcc
Confidence             1122           25789998875    45553     46788999986

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=89.49  E-value=0.12  Score=41.09  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++++|.|+|+|.+|..+++.|...|.. +..+|.
T Consensus        44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   78 (191)
T d1gdha1          44 KLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDT   78 (191)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECS
T ss_pred             eecccceEEeecccchHHHHHHHHhhccc-cccccc
Confidence            56789999999999999999999988876 455664

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.45  E-value=0.19  Score=39.90  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      +..|+|||.|..|...|..+++.|. +++|||.+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~   38 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQA   38 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            4679999999999999999999996 688888764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.12  Score=43.74  Aligned_cols=30  Identities=30%  Similarity=0.490  Sum_probs=27.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|+|||+|-.|+.+|..|+..|. +++|+|.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk   32 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEK   32 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEEC
Confidence            58999999999999999999995 6888885

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.41  E-value=0.18  Score=39.72  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=26.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      -|+|||.|..|...|..+++.|. +.++||.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~-kV~vie~   34 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGF-KTTCIEK   34 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            38999999999999999999996 5778774

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.26  E-value=0.2  Score=39.49  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=29.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      -|+|||.|..|...|..+++.|- +..|||.+.+
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~   37 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGA-RAAVVESHKL   37 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCC
Confidence            38999999999999999999995 6888887654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.20  E-value=0.19  Score=39.59  Aligned_cols=36  Identities=17%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .|++++|.|+|+|.+|..+++.|...|+. +...|.+
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIE   76 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cccceEEEEeecccchhhhhhhcccccce-Eeecccc
Confidence            47899999999999999999999888765 6666653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.19  E-value=0.16  Score=43.10  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=28.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      ...|+|||+|..|-.+|..|.+.|+ +++++|.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek   38 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIET   38 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEc
Confidence            3479999999999999999999999 5888884

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.10  E-value=0.52  Score=36.36  Aligned_cols=30  Identities=30%  Similarity=0.312  Sum_probs=22.5

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEE
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLIL   46 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~l   46 (292)
                      ..+|+|.|+ |++|..+++.....|..-|.+
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~   60 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGA   60 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccCCEEEEe
Confidence            578999888 558888888888888754443

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.05  E-value=0.12  Score=40.28  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=29.1

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      |+++|+|||.|..|...|..|+|.|.. .+|||..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            467899999999999999999999985 6677643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.02  E-value=0.17  Score=41.28  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      ...|+|||+|..|...|..|++.|. +++|+|..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~   36 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNG   36 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            3569999999999999999999996 58888854

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.98  E-value=0.15  Score=40.19  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNR   59 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R   59 (292)
                      .||.|+|+|-+|..+|..|+. |. +++.+|-|.=....|+.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~-g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSL-QN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCChhHHHHHHHHHC-CC-cEEEEECCHHHHHHHhh
Confidence            379999999999999988874 86 78899988755555554

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.93  E-value=0.25  Score=39.18  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      |+|||.|+-|-..|.++++.|-.++.|+|...+
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            789999999999999999999889999986554

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.90  E-value=0.24  Score=38.77  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+|+|.| +|++|+..++..-..|...++.++.
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~   64 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG   64 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccc
Confidence            4688888 5999999999988899998877653

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.75  E-value=1.2  Score=36.85  Aligned_cols=79  Identities=15%  Similarity=0.197  Sum_probs=48.0

Q ss_pred             CcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecccc
Q psy2302          18 LTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNIT   96 (292)
Q Consensus        18 ~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i~   96 (292)
                      ++|+|.|+.| +|++++..|...|. ++..+|...-. .+                   .+++..+...-+++.+..++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~-~~-------------------~~~l~~~~~~~~~~~~~~Dl~   59 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSS-DT-------------------RWRLRELGIEGDIQYEDGDMA   59 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSS-CC-------------------CHHHHHTTCGGGEEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCc-cc-------------------HHHHHHhcccCCcEEEEcccc
Confidence            6899998765 99999999999885 45566653210 01                   134444444445666777776


Q ss_pred             chhhHHHHHhcCCCCCCCcceEEecc
Q psy2302          97 LLRKVGALAVQGSLTEGPVDLVLSCV  122 (292)
Q Consensus        97 ~~~~~~~~i~~~~~~~~~~DlVv~a~  122 (292)
                      +.+.+.+.+..     ...++++.+.
T Consensus        60 d~~~~~~~~~~-----~~~~~~~~~a   80 (321)
T d1rpna_          60 DACSVQRAVIK-----AQPQEVYNLA   80 (321)
T ss_dssp             CHHHHHHHHHH-----HCCSEEEECC
T ss_pred             ChHHhhhhhcc-----cccccccccc
Confidence            65555554432     2455555554

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.74  E-value=0.41  Score=35.97  Aligned_cols=92  Identities=17%  Similarity=0.238  Sum_probs=55.1

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhC--CCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCG--IGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~G--vg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ..+|+|+|+ |-+|.++.+.|....  .-+|.++-.              .+..|+.        +....++..+.    
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s--------------~~~~Gk~--------i~~~~~~~~~~----   55 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS--------------AESAGQR--------MGFAESSLRVG----   55 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC--------------TTTTTCE--------EEETTEEEECE----
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee--------------cccCCcc--------eeeccccchhc----
Confidence            358999998 889999999998654  455555432              2334442        11111211111    


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCCceeecCc
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQTWFESGV  147 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~~  147 (292)
                      .+.. .           .+.+.|+++.|+.+..++.+..+ ..+.+..+|+.+.
T Consensus        56 ~~~~-~-----------~~~~~d~vf~a~p~~~s~~~~~~-~~~~g~~VID~Ss   96 (144)
T d2hjsa1          56 DVDS-F-----------DFSSVGLAFFAAAAEVSRAHAER-ARAAGCSVIDLSG   96 (144)
T ss_dssp             EGGG-C-----------CGGGCSEEEECSCHHHHHHHHHH-HHHTTCEEEETTC
T ss_pred             cchh-h-----------hhccceEEEecCCcchhhhhccc-cccCCceEEeech
Confidence            1111 1           12679999999988766665554 4577888887543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.72  E-value=2.6  Score=35.25  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=24.5

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCe
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGK   43 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~   43 (292)
                      ++++|+|+|+ |.+|+++++.|...|..-
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V   30 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHV   30 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeE
Confidence            4789999985 999999999999998653

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.28  E-value=0.56  Score=36.40  Aligned_cols=33  Identities=12%  Similarity=0.108  Sum_probs=24.8

Q ss_pred             CCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302         113 GPVDLVLSCVDNFEARMTINMACNQLGQTWFESG  146 (292)
Q Consensus       113 ~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~  146 (292)
                      .+.|+||+||..+..+.....+ .+.|+..+..+
T Consensus        78 ~~vDvViEcTG~f~~~~~~~~h-l~~G~k~Vi~s  110 (172)
T d2czca2          78 EKVDIIVDATPGGIGAKNKPLY-EKAGVKAIFQG  110 (172)
T ss_dssp             TTCSEEEECCSTTHHHHHHHHH-HHHTCEEEECT
T ss_pred             ccCCEEEECCCCCCCHHHHHHH-HHcCCCEEEEC
Confidence            5899999999999988777544 45677665543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.24  E-value=0.14  Score=34.78  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      ++|.|+|.|-+|.-++..-.+.|+. +.++|+|.=
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCCC
Confidence            5899999999999999999999986 777887653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=88.06  E-value=0.17  Score=42.60  Aligned_cols=39  Identities=21%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHH-----hCCCeEEEEeCCcccccCCCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTR-----CGIGKLILFDYDKVELANMNR   59 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~-----~Gvg~i~lvD~D~V~~sNl~R   59 (292)
                      -|+|||+|..|..+|..|++     .|+. ++|+|... ++.+..|
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~~-~~~~~~r   52 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRS-TKVYNGQ   52 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSSS-SCCCSCS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCCC-CCCcCCe
Confidence            38999999999999999974     6775 88888543 2334444

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.99  E-value=0.24  Score=40.95  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             HHHHhcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeC
Q psy2302          12 YEHIRTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDY   49 (292)
Q Consensus        12 q~~L~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~   49 (292)
                      +.+..+.-|+|||+|..|..+|..|++ .|. +++++|.
T Consensus        28 ~~~~~e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~   65 (278)
T d1rp0a1          28 MITYAETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQ   65 (278)
T ss_dssp             HHHHTEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEES
T ss_pred             cccccCCCEEEECCCHHHHHHHHHHHHccCC-eEEEEec
Confidence            344567889999999999999999997 687 5888885

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.95  E-value=0.5  Score=35.71  Aligned_cols=91  Identities=16%  Similarity=0.199  Sum_probs=51.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHh---CCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRC---GIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~---Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      ++|.|+|+ |-+|.++.+.|...   -+.++..+-...-....+                      ........+..   
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~----------------------~~~~~~~~~~~---   56 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAP----------------------SFGGTTGTLQD---   56 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCC----------------------GGGTCCCBCEE---
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccc----------------------cccCCceeeec---
Confidence            47999999 88899999766643   356666655433221111                      11111111111   


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhC--CceeecC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLG--QTWFESG  146 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~--~p~i~~~  146 (292)
                       +.+.+++           .++|+|+.|+.+..++.+..++.. .|  +++|+.+
T Consensus        57 -~~~~~~~-----------~~~DivF~a~~~~~s~~~~~~~~~-~g~~~~VID~S   98 (146)
T d1t4ba1          57 -AFDLEAL-----------KALDIIVTCQGGDYTNEIYPKLRE-SGWQGYWIDAA   98 (146)
T ss_dssp             -TTCHHHH-----------HTCSEEEECSCHHHHHHHHHHHHH-TTCCCEEEECS
T ss_pred             -ccchhhh-----------hcCcEEEEecCchHHHHhhHHHHh-cCCCeecccCC
Confidence             1111222           579999999998877776665554 44  3466653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.65  E-value=0.22  Score=39.17  Aligned_cols=35  Identities=31%  Similarity=0.481  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .+.+++|.|+|.|.+|..+++.|...|. ++..+|.
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~   75 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDP   75 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECT
T ss_pred             cccceeeeeccccchhHHHHHHhhhccc-eEEeecC
Confidence            4778999999999999999999988875 5666553

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.57  E-value=0.27  Score=39.23  Aligned_cols=29  Identities=28%  Similarity=0.373  Sum_probs=26.6

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      |+|||.|+.|...|.+|++.|. +.+|||.
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~   37 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVER   37 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEec
Confidence            8999999999999999999997 6888874

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.29  Score=39.74  Aligned_cols=36  Identities=31%  Similarity=0.526  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .||++.++|.|+ +|+|.++|+.|++.|. ++.++|.+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~   38 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   38 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467888888865 5799999999999998 68888854

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.51  E-value=0.31  Score=39.44  Aligned_cols=37  Identities=22%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             hcCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccc
Q psy2302          16 RTLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVE   53 (292)
Q Consensus        16 ~~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~   53 (292)
                      +.|+|+|.|+ +|+|.++++.|++.|. ++.++|...-+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            3688999977 6799999999999997 57788865433

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=87.46  E-value=1.2  Score=38.25  Aligned_cols=76  Identities=17%  Similarity=0.279  Sum_probs=54.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLT-RCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La-~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      ..+++.|+|+|.-+-.-++.+. ..++.++.++|.+.                  .+++.+.+++++ .+.++++..   
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~------------------~~~~~~~~~l~~-~~g~~v~~~---  184 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDP------------------LATAKLIANLKE-YSGLTIRRA---  184 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSH------------------HHHHHHHHHHTT-CTTCEEEEC---
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecCh------------------HHHHHHHHhhhh-ccCCCceec---
Confidence            3578899999999998888664 56789999887553                  366777777765 456666543   


Q ss_pred             ccchhhHHHHHhcCCCCCCCcceEEeccCC
Q psy2302          95 ITLLRKVGALAVQGSLTEGPVDLVLSCVDN  124 (292)
Q Consensus        95 i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~  124 (292)
                          ++.++.+       .+.|+|+.||.+
T Consensus       185 ----~s~~eav-------~~ADIi~t~Tas  203 (340)
T d1x7da_         185 ----SSVAEAV-------KGVDIITTVTAD  203 (340)
T ss_dssp             ----SSHHHHH-------TTCSEEEECCCC
T ss_pred             ----CCHHHHH-------hcCCceeecccc
Confidence                3445544       789999988865

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.31  E-value=0.26  Score=40.96  Aligned_cols=35  Identities=20%  Similarity=0.438  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          14 HIRTLTVIVVGVG---GVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        14 ~L~~~~V~vvG~G---glGs~va~~La~~Gvg~i~lvD~   49 (292)
                      .|++|+++|.|++   |+|.++|+.|++.|.. +.+.|.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~   42 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTW   42 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            4789999999986   7999999999999965 666664

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.28  E-value=0.23  Score=39.30  Aligned_cols=35  Identities=14%  Similarity=0.229  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      .++++||+|||.|..|.-+|..|+..+.....++-
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~   63 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQR   63 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhcccccccc
Confidence            47899999999999999999999999987666644

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.12  E-value=0.41  Score=37.50  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=30.7

Q ss_pred             HHHHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEE
Q psy2302          12 YEHIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLIL   46 (292)
Q Consensus        12 q~~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~l   46 (292)
                      .+-|++++|+|||.|+-|-+=|.||--+|+ ++++
T Consensus        11 l~~ik~k~IaViGYGsQG~AhAlNLrDSG~-~V~V   44 (182)
T d1np3a2          11 LSIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTV   44 (182)
T ss_dssp             HHHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEE
T ss_pred             hHHHCCCEEEEEeeCcHhHHHHhhhhhcCC-CEEE
Confidence            468999999999999999999999999999 5554

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.06  E-value=2.4  Score=35.28  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=26.2

Q ss_pred             hcCcEEEE-cCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          16 RTLTVIVV-GVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        16 ~~~~V~vv-G~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      +.++|+|. |.|-+|++++..|...|. +++.+|.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            33678887 568899999999999996 5777773

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=87.03  E-value=0.54  Score=38.34  Aligned_cols=28  Identities=36%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEE
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLIL   46 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~l   46 (292)
                      -|+|||.|.-|++.|...+|+|.+.+.|
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktlli   31 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLL   31 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            4899999999999999999999998855

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.00  E-value=0.38  Score=38.61  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCc
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIG--KLILFDYDK   51 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg--~i~lvD~D~   51 (292)
                      .||+|||.|+.|-..|...+++|..  +++++|.+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            4899999999999999999999975  578888654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=86.93  E-value=0.16  Score=39.57  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=28.8

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD   48 (292)
                      .+++++|+|||-+. +|..++.+|.+.|. .+++++
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h   68 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTH   68 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEEC
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhc-cccccc
Confidence            68899999999998 89999999998885 366655

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.88  E-value=0.32  Score=38.46  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=26.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      -|+|||.|+.|...|..+++.|. +++|+|.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~-kV~lie~   36 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEK   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            48999999999999999999996 5778774

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=86.69  E-value=0.11  Score=39.26  Aligned_cols=20  Identities=25%  Similarity=0.270  Sum_probs=16.5

Q ss_pred             EEEEcCChHHHHHHHHHHHh
Q psy2302          20 VIVVGVGGVGSVTAEMLTRC   39 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~   39 (292)
                      |-+||+|-+|+.+++.|...
T Consensus         2 IgfIG~G~mg~~l~~~L~~~   21 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDR   21 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC--
T ss_pred             EEEEeCcHHHHHHHHHHHhC
Confidence            56899999999999999663

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.11  Score=39.37  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=24.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCe
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGK   43 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~   43 (292)
                      .+||+|||.|.+|..+|..+++.|...
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            569999999999999999999999753

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=86.58  E-value=0.39  Score=37.32  Aligned_cols=33  Identities=18%  Similarity=0.247  Sum_probs=25.0

Q ss_pred             CCcceEEeccCCHHHHHHHHHHHHHhCCceeecC
Q psy2302         113 GPVDLVLSCVDNFEARMTINMACNQLGQTWFESG  146 (292)
Q Consensus       113 ~~~DlVv~a~d~~~~r~~in~~~~~~~~p~i~~~  146 (292)
                      .++|+||+||..+..+.....+. +.|+..|..+
T Consensus        77 ~~vDvViEcTG~f~~~~~~~~hl-~~G~K~vi~~  109 (171)
T d1cf2o1          77 DEADIVIDCTPEGIGAKNLKMYK-EKGIKAIFQG  109 (171)
T ss_dssp             HTCSEEEECCSTTHHHHHHHHHH-HTTCEEEECT
T ss_pred             cCCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEC
Confidence            57999999999998887766654 5577666543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.56  E-value=0.37  Score=40.09  Aligned_cols=35  Identities=40%  Similarity=0.513  Sum_probs=30.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVEL   54 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~   54 (292)
                      -|+|||.|..|...|..|++.|. +++|+|-..+.-
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~~~g   52 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKEPVIG   52 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCC
Confidence            59999999999999999999996 588999766543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=86.48  E-value=0.45  Score=40.58  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=24.5

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .++|+|+|.|+ |+.+...|...++.++++||-|.
T Consensus        78 pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~  111 (312)
T d1uira_          78 PKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDG  111 (312)
T ss_dssp             CCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCH
T ss_pred             cceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCH
Confidence            46999999985 44444444445689999999765

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.45  E-value=0.63  Score=37.74  Aligned_cols=84  Identities=10%  Similarity=0.165  Sum_probs=50.5

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC--CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEecc
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGI--GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFN   94 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gv--g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~   94 (292)
                      |+|+|.|+ +|+|.++|+.|++.+-  .++.+.+.+.                  .|.+.+++ +.+..+  ++..+..+
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~------------------~~~~~~~~-~~~~~~--~~~~~~~D   61 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR------------------EQAKELED-LAKNHS--NIHILEID   61 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT------------------TSCHHHHH-HHHHCT--TEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCH------------------HHHHHHHH-HHhcCC--cEEEEEEE
Confidence            57899887 7999999999986432  3566665432                  11222333 333344  45667778


Q ss_pred             ccchhhHHHHHhcCC--CCCCCcceEEecc
Q psy2302          95 ITLLRKVGALAVQGS--LTEGPVDLVLSCV  122 (292)
Q Consensus        95 i~~~~~~~~~i~~~~--~~~~~~DlVv~a~  122 (292)
                      +++.+..+++++.-.  ..+.+.|++|...
T Consensus        62 vs~~~~v~~~~~~i~~~~~~~~iDiLvnNA   91 (248)
T d1snya_          62 LRNFDAYDKLVADIEGVTKDQGLNVLFNNA   91 (248)
T ss_dssp             TTCGGGHHHHHHHHHHHHGGGCCSEEEECC
T ss_pred             eccHHHHHHHHhhhHHHhhcCCcceEEeec
Confidence            877666665443211  1235689988764

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.42  E-value=1  Score=34.89  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=33.2

Q ss_pred             HHhcCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCcccc
Q psy2302          14 HIRTLTVIVVGVGG-VGSVTAEMLTRCGIGKLILFDYDKVEL   54 (292)
Q Consensus        14 ~L~~~~V~vvG~Gg-lGs~va~~La~~Gvg~i~lvD~D~V~~   54 (292)
                      .|++++|+|||-+. +|..+|.+|++.|. ..++.|.+....
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga-TVt~~~~~~~~~   66 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQK   66 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC-EEEEeccccccc
Confidence            68999999999775 69999999999885 678888665443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.34  E-value=0.43  Score=38.11  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=27.4

Q ss_pred             cCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          17 TLTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        17 ~~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      +|+++|.|+ +|+|.++|+.|++.|. ++.+.|-+
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~   34 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLR   34 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            356777765 7999999999999997 68888865

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.11  E-value=0.68  Score=39.14  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=24.8

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .-++|+|+|.|+- +.+-..|...++.++++||-|.
T Consensus        89 ~pk~VLiiGgG~G-~~~r~~l~~~~~~~i~~VEIDp  123 (295)
T d1inla_          89 NPKKVLIIGGGDG-GTLREVLKHDSVEKAILCEVDG  123 (295)
T ss_dssp             SCCEEEEEECTTC-HHHHHHTTSTTCSEEEEEESCH
T ss_pred             CCceEEEecCCch-HHHHHHHhcCCCceEEEecCCH
Confidence            3579999999864 3333344445789999999874

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=86.05  E-value=0.61  Score=38.96  Aligned_cols=34  Identities=38%  Similarity=0.515  Sum_probs=25.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      .++|+|+|.|+ |+.....|...++.++++||-|.
T Consensus        76 p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~  109 (274)
T d1iy9a_          76 PEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDG  109 (274)
T ss_dssp             CCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCH
T ss_pred             cceEEecCCCC-cHHHHHHHhcCCcceEEEecCCH
Confidence            47999999886 44444555557899999999776

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.03  E-value=0.38  Score=38.50  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      -|+|||.|+-|-..|..+++.|..++.|+|.+..
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            3799999999999999999999999999987653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.98  E-value=0.47  Score=33.48  Aligned_cols=29  Identities=21%  Similarity=0.116  Sum_probs=25.6

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIG   42 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg   42 (292)
                      .+++++|+|||.|..|.-+|..|+..+-.
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~   57 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTPVAKH   57 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSCS
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHHhcCE
Confidence            57899999999999999999999876533

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.61  E-value=0.49  Score=36.94  Aligned_cols=32  Identities=34%  Similarity=0.418  Sum_probs=27.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      -|+|||.|+-|...|.++++.|.. ..|+|...
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~-V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLK-TALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCC-EEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCe-EEEEeccc
Confidence            389999999999999999999964 77787543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=0.41  Score=34.43  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVEL   54 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~   54 (292)
                      ..||.|+|.|-+|--++....++|+. +.++|++.-.+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~-v~v~d~~~~~P   47 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVE-VIAVDRYADAP   47 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCE-EEEEESSTTCG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCCCCCc
Confidence            46899999999999999999999985 67789876554

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.37  E-value=2.2  Score=35.31  Aligned_cols=85  Identities=16%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc--ccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEec
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFDYDK--VELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNF   93 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD~D~--V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~   93 (292)
                      +++++|.| .|-+|++++..|...|. +++.+|...  .....+.       .+...+        ...+ ...++.+..
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~-------~~~~~~--------~~~~-~~~~~~~~~   63 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRSSNFNTQRIN-------HIYIDP--------HNVN-KALMKLHYA   63 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCTTTT-------TTC-----------------CCEEEEEC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECCCcccchhhhh-------hhhhhh--------hhcc-ccceEEEEc
Confidence            36777875 57799999999999996 466666522  1111121       111111        1111 345666677


Q ss_pred             cccchhhHHHHHhcCCCCCCCcceEEeccC
Q psy2302          94 NITLLRKVGALAVQGSLTEGPVDLVLSCVD  123 (292)
Q Consensus        94 ~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d  123 (292)
                      ++++.+.+...+..     .++|+|+.+..
T Consensus        64 Di~~~~~~~~~~~~-----~~~D~Vih~Aa   88 (339)
T d1n7ha_          64 DLTDASSLRRWIDV-----IKPDEVYNLAA   88 (339)
T ss_dssp             CTTCHHHHHHHHHH-----HCCSEEEECCS
T ss_pred             cccCHHHHHHHHhh-----hccchhhhccc
Confidence            77766666665543     47899998763

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=85.07  E-value=0.37  Score=40.50  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=33.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCC
Q psy2302          18 LTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANM   57 (292)
Q Consensus        18 ~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl   57 (292)
                      .-|+|||.|..|...|..|++.|.. ++|++-+.+.-+|-
T Consensus         6 ~DVvVIG~G~AGl~AAl~aa~~G~~-V~liEK~~~~~g~S   44 (336)
T d2bs2a2           6 CDSLVIGGGLAGLRAAVATQQKGLS-TIVLSLIPVKRSHS   44 (336)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCC-EEEECSSCGGGSGG
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCC-EEEEecCCCCCCch
Confidence            4599999999999999999999984 89999887765543

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.96  E-value=0.38  Score=41.02  Aligned_cols=31  Identities=23%  Similarity=0.474  Sum_probs=27.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      -|+|||.|.-|+.+|..|+++|. ++.+++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGV-QTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcC-eEEEEecC
Confidence            48999999999999999999997 57788864

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.89  E-value=0.46  Score=37.71  Aligned_cols=36  Identities=11%  Similarity=0.243  Sum_probs=30.8

Q ss_pred             cCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcc
Q psy2302          17 TLTVIVVGVGGVGSVTAEMLTRCGI-GKLILFDYDKV   52 (292)
Q Consensus        17 ~~~V~vvG~GglGs~va~~La~~Gv-g~i~lvD~D~V   52 (292)
                      ..+++|||.|..|.++|..|.+.|. ++|++++.+..
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            3468999999999999999999887 58999987543

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=84.88  E-value=3.8  Score=33.70  Aligned_cols=103  Identities=15%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEE
Q psy2302          18 LTVIVVG-VGGVGSVTAEMLTRCGI-----GKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVH   91 (292)
Q Consensus        18 ~~V~vvG-~GglGs~va~~La~~Gv-----g~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~   91 (292)
                      .||+|.| .|-+|+++++.|...|.     .++..+|.-.....-                    ..+........++.+
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--------------------~~~~~~~~~~~~~~~   60 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--------------------ANLAPVDADPRLRFV   60 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--------------------GGGGGGTTCTTEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--------------------hHhhhhhcCCCeEEE
Confidence            3789995 56689999999999774     456667653322110                    112222223456666


Q ss_pred             eccccchhhHHHHHhcCCCCCCCcceEEeccCC-----------------HHHHHHHHHHHHHhCCc-eeecCc
Q psy2302          92 NFNITLLRKVGALAVQGSLTEGPVDLVLSCVDN-----------------FEARMTINMACNQLGQT-WFESGV  147 (292)
Q Consensus        92 ~~~i~~~~~~~~~i~~~~~~~~~~DlVv~a~d~-----------------~~~r~~in~~~~~~~~p-~i~~~~  147 (292)
                      ...+..........       ..+|.|+.+...                 ......+-++|.+.+++ +|+++.
T Consensus        61 ~~d~~~~~~~~~~~-------~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss  127 (322)
T d1r6da_          61 HGDIRDAGLLAREL-------RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST  127 (322)
T ss_dssp             ECCTTCHHHHHHHT-------TTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             Eeccccchhhhccc-------cccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeec
Confidence            66665534443332       578887765421                 11123456678887764 555543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.49  E-value=0.99  Score=38.05  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             HHhcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q psy2302          14 HIRTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYD   50 (292)
Q Consensus        14 ~L~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D   50 (292)
                      .+++++|+-||||. | .++..+++.|..+++-+|..
T Consensus        31 ~~~~~~VLDiGcG~-G-~ls~~aa~~Ga~~V~avd~s   65 (316)
T d1oria_          31 LFKDKVVLDVGSGT-G-ILCMFAAKAGARKVIGIECS   65 (316)
T ss_dssp             HHTTCEEEEETCTT-S-HHHHHHHHTTCSEEEEEECS
T ss_pred             cCCcCEEEEEecCC-c-HHHHHHHHhCCCEEEEEcCc
Confidence            34789999999996 5 46778899999999998853

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.34  E-value=0.53  Score=38.30  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=28.5

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy2302          20 VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKV   52 (292)
Q Consensus        20 V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V   52 (292)
                      |+|||.|..|...|..+++.|. ++.|+|.+.+
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~~~   35 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKSRL   35 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSST
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            7999999999999999999996 6888897653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.21  E-value=1  Score=37.68  Aligned_cols=34  Identities=15%  Similarity=0.352  Sum_probs=24.3

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTR-CGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~-~Gvg~i~lvD~D~   51 (292)
                      ..++|+|+|.|+-+  ++..+.+ .++.+++++|-|.
T Consensus        78 ~pk~vLiiGgG~G~--~~~~~l~~~~~~~v~~vEiD~  112 (285)
T d2o07a1          78 NPRKVLIIGGGDGG--VLREVVKHPSVESVVQCEIDE  112 (285)
T ss_dssp             SCCEEEEEECTTSH--HHHHHTTCTTCCEEEEEESCH
T ss_pred             CcCeEEEeCCCchH--HHHHHHHcCCcceeeeccCCH
Confidence            35789999998633  3444555 4799999998664

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.02  E-value=0.42  Score=36.31  Aligned_cols=30  Identities=33%  Similarity=0.429  Sum_probs=26.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      -|+|||.|..|...|..+++.|.. .++||.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEE
Confidence            389999999999999999999986 666774

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.79  E-value=0.69  Score=34.54  Aligned_cols=35  Identities=14%  Similarity=0.098  Sum_probs=28.8

Q ss_pred             hcCcEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCc
Q psy2302          16 RTLTVIVV--GVGGVGSVTAEMLTRCGIGKLILFDYDK   51 (292)
Q Consensus        16 ~~~~V~vv--G~GglGs~va~~La~~Gvg~i~lvD~D~   51 (292)
                      -.++|+|+  |.|-+|.++|..|++.|. ++||+..+.
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            34566666  999999999999999995 799988654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.77  E-value=0.4  Score=38.42  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHH--------------------HhCCCeEEEEe
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLT--------------------RCGIGKLILFD   48 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La--------------------~~Gvg~i~lvD   48 (292)
                      +..++|+|||.|-++.=+|..|+                    ++|+.+++++-
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~   90 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVG   90 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEEC
T ss_pred             ccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEE
Confidence            45789999999999999999888                    78999999864

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.68  E-value=0.42  Score=38.53  Aligned_cols=35  Identities=17%  Similarity=0.286  Sum_probs=31.6

Q ss_pred             HhcCcEEEEcCChHHHHHHHHHHH--------------------hCCCeEEEEeC
Q psy2302          15 IRTLTVIVVGVGGVGSVTAEMLTR--------------------CGIGKLILFDY   49 (292)
Q Consensus        15 L~~~~V~vvG~GglGs~va~~La~--------------------~Gvg~i~lvD~   49 (292)
                      +..++|+|||.|-++.=+|..|++                    +|+.+++++..
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~R   91 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGR   91 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECS
T ss_pred             ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEE
Confidence            468999999999999999999998                    69999999764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=83.52  E-value=0.4  Score=40.48  Aligned_cols=30  Identities=37%  Similarity=0.664  Sum_probs=26.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      -|+|||.|.-|+.+|..|+..|. ++.|+.-
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~-kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGY-KVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCC-eEEEEec
Confidence            48999999999999999999997 6888774

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.27  E-value=1.9  Score=33.16  Aligned_cols=32  Identities=34%  Similarity=0.465  Sum_probs=27.0

Q ss_pred             cCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q psy2302          17 TLTVIVVG-VGGVGSVTAEMLTRCGIGKLILFD   48 (292)
Q Consensus        17 ~~~V~vvG-~GglGs~va~~La~~Gvg~i~lvD   48 (292)
                      +.+|+|.| .||+|+...+.....|..-+...-
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~   64 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTG   64 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCCceEEecC
Confidence            56799998 599999999988899998887653

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=82.68  E-value=3.4  Score=32.91  Aligned_cols=36  Identities=8%  Similarity=0.091  Sum_probs=22.2

Q ss_pred             hhHHHHHhcCCCCCCCcceEEeccCCHHHHHHHHHHHHHhCC
Q psy2302          99 RKVGALAVQGSLTEGPVDLVLSCVDNFEARMTINMACNQLGQ  140 (292)
Q Consensus        99 ~~~~~~i~~~~~~~~~~DlVv~a~d~~~~r~~in~~~~~~~~  140 (292)
                      +++++++..     .+.|+|+.++.+. ....+...|.+.|+
T Consensus        75 ~~~~~l~~~-----~~iD~V~i~tp~~-~h~~~~~~al~aG~  110 (237)
T d2nvwa1          75 DSLESFAQY-----KDIDMIVVSVKVP-EHYEVVKNILEHSS  110 (237)
T ss_dssp             SCHHHHHHC-----TTCSEEEECSCHH-HHHHHHHHHHHHSS
T ss_pred             cchhhcccc-----cccceeeccCCCc-chhhHHHHHHHhcc
Confidence            345555543     5799999998753 34444555666554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.48  E-value=0.43  Score=38.68  Aligned_cols=55  Identities=22%  Similarity=0.434  Sum_probs=37.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeE
Q psy2302          18 LTVIVVGV-GGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTI   88 (292)
Q Consensus        18 ~~V~vvG~-GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v   88 (292)
                      .||+|.|+ |-+|+.++..|...|. ++..+|...++..|               .+.+.+.++...|++-+
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~~D~~d---------------~~~~~~~l~~~~~d~vi   57 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLDITN---------------VLAVNKFFNEKKPNVVI   57 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTCCTTC---------------HHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEeechhccCCC---------------HHHHHHHHHHcCCCEEE
Confidence            47999997 9999999999998886 45666644332222               23445566666666544

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.13  E-value=1.4  Score=36.62  Aligned_cols=50  Identities=24%  Similarity=0.256  Sum_probs=36.2

Q ss_pred             CChHHHHHHHhcCc-----EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccC
Q psy2302           6 MGIVENYEHIRTLT-----VIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELAN   56 (292)
Q Consensus         6 ~G~~~~q~~L~~~~-----V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sN   56 (292)
                      |....-++.+....     |+|||.|..|...|..|++.|. ++.|++-..+.-.|
T Consensus         3 ~~~~~~~~~~~~~~~e~~DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~~~gG~   57 (317)
T d1qo8a2           3 WDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFSGGN   57 (317)
T ss_dssp             CCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSSCTT
T ss_pred             cchhhhhhhccCCCCCccCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence            33433345554433     9999999999999999999996 58888866554333

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=82.11  E-value=1.3  Score=38.88  Aligned_cols=92  Identities=12%  Similarity=0.152  Sum_probs=61.9

Q ss_pred             hcCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCCCccCcCCCCChHHHHHHHHHHhhCCCCeEEEEeccc
Q psy2302          16 RTLTVIVVGVGGVGSVTAEMLTRCGIGKLILFDYDKVELANMNRLFFQPDQCGLSKVEAARITLQNINPDVTIEVHNFNI   95 (292)
Q Consensus        16 ~~~~V~vvG~GglGs~va~~La~~Gvg~i~lvD~D~V~~sNl~R~~~~~~diG~~Ka~a~~~~l~~~np~v~v~~~~~~i   95 (292)
                      +..+|++.|+|+.|..++..|+..|+.-+..+|...-..-    +.+.                     .+.|-      
T Consensus        37 ~~~~~~l~g~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~----~~~~---------------------g~pv~------   85 (395)
T d2py6a1          37 NATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSG----ELYY---------------------GLPII------   85 (395)
T ss_dssp             GGCEEEEECSSSTHHHHHSCSSSCSSEEEEEECTTTTTSC----CEET---------------------TEEEE------
T ss_pred             CCceEEEEcCchhHHHHHHHHHHCCceEEEEecCchhhcC----ceec---------------------ceEee------
Confidence            3457999999999999999999999999999997653210    1111                     22221      


Q ss_pred             cchhhHHHHHhcCCCCCCCcc-eEEeccCCHHHHHHHHHHHHHhCCceeec
Q psy2302          96 TLLRKVGALAVQGSLTEGPVD-LVLSCVDNFEARMTINMACNQLGQTWFES  145 (292)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~~~D-lVv~a~d~~~~r~~in~~~~~~~~p~i~~  145 (292)
                       +++.+.+...      ..-+ +.|++.-....+....+.|.++|+|.+..
T Consensus        86 -s~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (395)
T d2py6a1          86 -STDRFTELAT------HDRDLVALNTCRYDGPKRFFDQICRTHGIPHLNF  129 (395)
T ss_dssp             -CHHHHHHHHH------TCTTEEEEECCCSHHHHHHHHHHHHHTTCCEEEH
T ss_pred             -cHHHhhhhhh------ccCcEEEEEeccccchhhHHHHHHHhcCCcccch
Confidence             1233333321      2344 55666666778888899999999998764

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=82.01  E-value=0.59  Score=39.83  Aligned_cols=30  Identities=33%  Similarity=0.498  Sum_probs=26.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q psy2302          19 TVIVVGVGGVGSVTAEMLTRCGIGKLILFDY   49 (292)
Q Consensus        19 ~V~vvG~GglGs~va~~La~~Gvg~i~lvD~   49 (292)
                      -|+|||.|.-|+.+|..|+++|. ++.++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~-~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGI-PTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            48999999999999999999996 5777774