Psyllid ID: psy2356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
Protein Sequence
SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETFMSDSEDENGEW
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHccccccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHcccccccccHHHccccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHcccccccEcccccEHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHcHccccccccccccccHHHHHHHcccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSrganvdsatkkgNTALHIASLGeflvpvwlgdfkqgdgftpLAVAMQQGHDKVVAVLLEndtrgkdgfTPLAVAMQQGHDKVVAVLLEndtrgkvrlpalhiaAKKDDTKAAKLLLEVSCtvdpasvlssttgnaatggyliknehnpdvtsksgftplhiashygnegvanilldkradvnfsaksgltplhvASFMGCMNIVIYLLqndanpdiptvrgetplhlaaRANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKgdgekhkngltplhlcaqEDRVGVAELLLKnnaqvdtptkMDIATTLLeygakpnaesvagftplhlsasegHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAkgdgekhkvvapEIMQetfmsdsedengew
Flexible Loop (DISEMBL)
SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCtvdpasvlssttgnaATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSqlkkrgreghTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLknnaqvdtptKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIiakgdgekhkvvaPEIMqetfmsdsedengew
Low Complexity Region (SEG)
SGEGHTSFLRAARAGHLDKIIEHLKNNVDIntananglnalhlaSKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIaakkddtkaaklllEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETFMSDSEDENGEW
Disordered region (IsUnstruct)
********LRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEH***V**KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISV*********************ALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKP***SVAGFTPL****************************GHTALSIAQKLGYISVEESLKGVTETLIIAKGD***************************
Disordered Region (DISOPRED)
SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETFMSDS**E***W
Disordered Region (DISEMBL)
SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG**************HTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETF***********
Disordered Region (DISPRO)
***GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETFMSDSEDENG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETFMSDSEDENGEW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	529	2.2.26 [Sep-21-2011]
Q01484	3957	Ankyrin-2 OS=Homo sapiens	yes	N/A	0.860	0.114	0.426	3e-99
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.850	0.102	0.433	2e-98
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	N/A	0.860	0.116	0.424	3e-98
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.858	0.231	0.427	9e-98
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.841	0.236	0.406	1e-88
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.835	0.237	0.404	9e-86
Q4UMH6	1179	Putative ankyrin repeat p	yes	N/A	0.888	0.398	0.280	5e-37
Q9ULJ7	1429	Ankyrin repeat domain-con	no	N/A	0.848	0.314	0.299	3e-34
Q5ZLC8	1073	Serine/threonine-protein	no	N/A	0.837	0.412	0.273	1e-28
Q8BTI7	1076	Serine/threonine-protein	no	N/A	0.880	0.433	0.266	3e-27

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  362 bits (930), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 247/579 (42%), Positives = 320/579 (55%), Gaps = 124/579 (21%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
            + + SFLRAARAG+LDK++E+LK  +DINT N NGLNALHLA+K+GH+ +V ELL RG+
Sbjct: 29  SDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGS 88

Query: 62  NVDSATKKGNTALHIASL-GEFLVPVWLGDFKQG--------DGFTPLAVAMQQGHDKVV 112
           +VDSATKKGNTALHIASL G+  V   L   K+G        +GFTPL +A Q+ H  VV
Sbjct: 89  SVDSATKKGNTALHIASLAGQAEVVKVL--VKEGANINAQSQNGFTPLYMAAQENHIDVV 146

Query: 113 AVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTK 168
             LLEN     T  +DGFTPLAVA+QQGH++ VA+LLENDT+GKVRLPALHIAA+KDDTK
Sbjct: 147 KYLLENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTK 206

Query: 169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK--------SGFTPLHIA 220
           +A LLL+                          N+HN DV SK        SGFTPLHIA
Sbjct: 207 SAALLLQ--------------------------NDHNADVQSKMMVNRTTESGFTPLHIA 240

Query: 221 SHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE 280
           +HYGN  VA +LL++ A V+F+A++G+TPLHVAS  G  N+V  LL      D  T  G 
Sbjct: 241 AHYGNVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGL 300

Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREG----H----------------------- 313
           TPLH AAR+    ++ +LL  GA + AR + G    H                       
Sbjct: 301 TPLHCAARSGHDQVVELLLERGAPLLARTKNGLSPLHMAAQGDHVECVKHLLQHKAPVDD 360

Query: 314 ------TALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE---- 363
                 TAL +A   G+  V + L   +R+    R   G T L IA K   I V E    
Sbjct: 361 VTLDYLTALHVAAHCGHYRVTKLL-LDKRANPNARALNGFTPLHIACKKNRIKVMELLVK 419

Query: 364 ---SLKGVTET------------------LIIAKGDGEKHKN--GLTPLHLCAQEDRVGV 400
              S++ +TE+                  L++  G      N  G T LH+ A+  +V V
Sbjct: 420 YGASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEV 479

Query: 401 AELLLKNNAQVD-------TPT-------KMDIATTLLEYGAKPNAESVAGFTPLHLSAS 446
              LL+N A VD       TP        K +I   LL++ A P+A +  G+TPLH+SA 
Sbjct: 480 VRCLLRNGALVDARAREEQTPLHIASRLGKTEIVQLLLQHMAHPDAATTNGYTPLHISAR 539

Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           EG  D++++LLE GA  S A K+G T L +A K G + V
Sbjct: 540 EGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLDV 578

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.
Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  360 bits (924), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 220/508 (43%), Positives = 304/508 (59%), Gaps = 58/508 (11%)

Query: 7   SFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSA 66
           S+LRAARAGHL+K ++++KN VDIN  N NGLNALHLASK+GH+ VV+ELL R ANVD+A
Sbjct: 44  SYLRAARAGHLEKALDYIKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREANVDAA 103

Query: 67  TKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLEND 119
           TKKGNTALHIASL     +V V +      + +  +GFTPL +A Q+ H +VV  LL+N 
Sbjct: 104 TKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNG 163

Query: 120 TRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLE 175
                  +DGFTPLAVA+QQGHD+VV++LLENDT+GKVRLPALHIAA+KDDTKAA LLL+
Sbjct: 164 ASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQ 223

Query: 176 VSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235
                                     N++N DV SKSGFTPLHIA+HYGN  VA +LL++
Sbjct: 224 --------------------------NDNNADVESKSGFTPLHIAAHYGNINVATLLLNR 257

Query: 236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII 295
            A V+F+A++ +TPLHVAS  G  N+V  LL   A  D  T  G TPLH  AR+    ++
Sbjct: 258 AAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVV 317

Query: 296 RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
            +LL   A + ++ + G + L +A +  +++  + L       +     +  TAL +A  
Sbjct: 318 EMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLL-LQHNVPVDDVTNDYLTALHVAAH 376

Query: 356 LGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPT 415
            G+  V + L      L        K  NG TPLH+  +++R+ V ELLLK+ A +   T
Sbjct: 377 CGHYKVAKVL------LDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVT 430

Query: 416 K--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA 461
           +              ++I + L+ +GA PN  +V G T LH++A  G A++   L++ GA
Sbjct: 431 ESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGA 490

Query: 462 DVSHAAKEGHTALSIAQKLGYISVEESL 489
            V   AK+  T L I+ +LG   + + L
Sbjct: 491 QVEAKAKDDQTPLHISARLGKADIVQQL 518

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  359 bits (921), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 246/579 (42%), Positives = 319/579 (55%), Gaps = 124/579 (21%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
            + + SFLRAARAG+LDK++E+LK  +DINT N NGLNALHLA+K+GH+ +V ELL RG+
Sbjct: 29  SDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGS 88

Query: 62  NVDSATKKGNTALHIASL-GEFLVPVWLGDFKQG--------DGFTPLAVAMQQGHDKVV 112
           +VDSATKKGNTALHIASL G+  V   L   K+G        +GFTPL +A Q+ H  VV
Sbjct: 89  SVDSATKKGNTALHIASLAGQAEVVKVL--VKEGANINAQSQNGFTPLYMAAQENHIDVV 146

Query: 113 AVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTK 168
             LLEN     T  +DGFTPLAVA+QQGH++ VA+LLENDT+GKVRLPALHIAA+KDDTK
Sbjct: 147 KYLLENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTK 206

Query: 169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK--------SGFTPLHIA 220
           +A LLL+                          N+HN DV SK        SGFTPLHIA
Sbjct: 207 SAALLLQ--------------------------NDHNADVQSKMMVNRTTESGFTPLHIA 240

Query: 221 SHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE 280
           +HYGN  VA +LL++ A V+F+A++G+TPLHVAS  G  N+V  LL      D  T  G 
Sbjct: 241 AHYGNVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGL 300

Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREG----H----------------------- 313
           TPLH AAR+    ++ +LL   A + AR + G    H                       
Sbjct: 301 TPLHCAARSGHDQVVELLLERKAPLLARTKNGLSPLHMAAQGDHVECVKHLLQYKAPVDD 360

Query: 314 ------TALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE---- 363
                 TAL +A   G+  V + L   +R+    R   G T L IA K   I V E    
Sbjct: 361 VTLDYLTALHVAAHCGHYRVTKLL-LDKRANPNARALNGFTPLHIACKKNRIKVMELLVK 419

Query: 364 ---SLKGVTET------------------LIIAKGDGEKHKN--GLTPLHLCAQEDRVGV 400
              S++ +TE+                  L++  G      N  G T LH+ A+  +V V
Sbjct: 420 YGASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEV 479

Query: 401 AELLLKNNAQVD-------TPT-------KMDIATTLLEYGAKPNAESVAGFTPLHLSAS 446
              LL+N A VD       TP        K +I   LL++ A P+A +  G+TPLH+SA 
Sbjct: 480 VRCLLRNGALVDARAREEQTPLHIASRLGKTEIVQLLLQHMAHPDAATTNGYTPLHISAR 539

Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           EG  D++++LLE GA  S A K+G T L +A K G + V
Sbjct: 540 EGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLDV 578

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  357 bits (917), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 219/512 (42%), Positives = 305/512 (59%), Gaps = 58/512 (11%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           + + S+LRAARAGHL+K ++++KN VD+N  N NGLNALHLASK+GH+ VV+ELL R AN
Sbjct: 23  DANASYLRAARAGHLEKALDYIKNGVDVNICNQNGLNALHLASKEGHVEVVSELLQREAN 82

Query: 63  VDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVL 115
           VD+ATKKGNTALHIASL     +V V +      + +  +GFTPL +A Q+ H +VV  L
Sbjct: 83  VDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVRFL 142

Query: 116 LENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAK 171
           L+N        +DGFTPLAVA+QQGHD+VV++LLENDT+GKVRLPALHIAA+KDDTKAA 
Sbjct: 143 LDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAA 202

Query: 172 LLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI 231
           LLL+                          N+ N DV SKSGFTPLHIA+HYGN  VA +
Sbjct: 203 LLLQ--------------------------NDTNADVESKSGFTPLHIAAHYGNINVATL 236

Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ 291
           LL++ A V+F+A++ +TPLHVAS  G  N+V  LL   A  D  T  G TPLH  AR+  
Sbjct: 237 LLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGH 296

Query: 292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALS 351
             ++ +LL   A + ++ + G + L +A +  +++  + L       +     +  TAL 
Sbjct: 297 EQVVEMLLDRSAPILSKTKNGLSPLHMATQGDHLNCVQLL-LQHNVPVDDVTNDYLTALH 355

Query: 352 IAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQV 411
           +A   G+  V + L      L        K  NG TPLH+  +++R+ V ELLLK+ A +
Sbjct: 356 VAAHCGHYKVAKVL------LDKKASPNAKALNGFTPLHIACKKNRIRVMELLLKHGASI 409

Query: 412 DTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
              T+              ++I + L+ +GA PN  +V G T LH++A  G A++   L+
Sbjct: 410 QAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLV 469

Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           + GA V   AK+  T L I+ +LG   + + L
Sbjct: 470 QDGAQVEAKAKDDQTPLHISARLGKADIVQQL 501

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  327 bits (838), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 206/507 (40%), Positives = 295/507 (58%), Gaps = 62/507 (12%)

Query: 6   TSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDS 65
           TSFLRAAR+G+LDK ++HL+N VDINT N NGLN LHLASK+GH+ +V ELL +   +++
Sbjct: 14  TSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEIILET 73

Query: 66  ATKKGNTALHIASL-GEFLVPVWLGDF------KQGDGFTPLAVAMQQGHDKVVAVLLEN 118
            TKKGNTALHIA+L G+  V   L ++      +   GFTPL +A Q+ H +VV  LLEN
Sbjct: 74  TTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLEN 133

Query: 119 ----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLL 174
               +   +DGFTPLAVA+QQGH+ VVA L+   T+GKVRLPALHIAA+ DDT+ A +LL
Sbjct: 134 GANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLL 193

Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
           +                          N+ NPDV SK+GFTPLHIA+HY N  VA +LL+
Sbjct: 194 Q--------------------------NDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLN 227

Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
           + A VNF+ ++G+TPLH+AS  G + +V  LL   A  +  T    TPLH AAR     I
Sbjct: 228 RGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRI 287

Query: 295 IRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ 354
             ILL +GA + A+ + G + + +A +  ++     L   + +++     +  T L +A 
Sbjct: 288 SEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYD-AEIDDITLDHLTPLHVAA 346

Query: 355 KLGYISVEESLKGVTETLIIAKGDGEKHK--NGLTPLHLCAQEDRVGVAELLLKNNAQVD 412
             G+  V +        +++ KG     +  NG TPLH+  +++ V V ELLLK  A +D
Sbjct: 347 HCGHHRVAK--------VLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASID 398

Query: 413 TPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE 458
             T+              + I   LL+ GA PN  +V   TPLH++A  GH +++  LL+
Sbjct: 399 AVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 458

Query: 459 HGADVSHAAKEGHTALSIAQKLGYISV 485
           + A V+  AK+  T L  A ++G+ ++
Sbjct: 459 NKAKVNAKAKDDQTPLHCAARIGHTNM 485

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  318 bits (814), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 204/504 (40%), Positives = 291/504 (57%), Gaps = 62/504 (12%)

Query: 6   TSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDS 65
           TSFLRAAR+G+LDK ++HL+N VDINT N NGLN LHLASK+GH+ +V ELL +   +++
Sbjct: 10  TSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEIILET 69

Query: 66  ATKKGNTALHIASL-GEFLVPVWLGDF------KQGDGFTPLAVAMQQGHDKVVAVLLEN 118
            TKKGNTALHIA+L G+  V   L ++      +   GFTPL +A Q+ H +VV  LLEN
Sbjct: 70  TTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLEN 129

Query: 119 ----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLL 174
               +   +DGFTPLAVA+QQGH+ VVA L+   T+GKVRLPALHIAA+ DDT+ A +LL
Sbjct: 130 GANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLL 189

Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
           +                          N+ NPDV SK+GFTPLHIA+HY N  VA +LL+
Sbjct: 190 Q--------------------------NDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLN 223

Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
           + A VNF+ ++G+TPLH+AS  G + +V  LL   A  +  T    TPLH AAR     I
Sbjct: 224 RGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRI 283

Query: 295 IRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ 354
             ILL +GA + A+ + G + + +A +  ++     L     +++     +  T L +A 
Sbjct: 284 SEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLL-LQYNAEIDDITLDHLTPLHVAA 342

Query: 355 KLGYISVEESLKGVTETLIIAKGDGEKHK--NGLTPLHLCAQEDRVGVAELLLKNNAQVD 412
             G+  V +        +++ KG     +  NG TPLH+  +++ + V ELLLK  A +D
Sbjct: 343 HCGHHRVAK--------VLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASID 394

Query: 413 TPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE 458
             T+              + I   LL+ GA PN  +V   TPLH++A  GH +++  LL+
Sbjct: 395 AVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 454

Query: 459 HGADVSHAAKEGHTALSIAQKLGY 482
           + A  +  AK+  T L  A ++G+
Sbjct: 455 NKAKANAKAKDDQTPLHCAARIGH 478

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 144/513 (28%), Positives = 242/513 (47%), Gaps = 43/513 (8%)

Query: 11   AARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKG 70
            AA+ G+LD      KN  D+N    NG   LH A K G+LH+V  L+   AN+ + T  G
Sbjct: 645  AAKNGNLDLAKLLAKNGADVNAKTDNGETVLHYAVKSGNLHLVKWLIENQANIHAKTDNG 704

Query: 71   NTALHIA-SLGE----FLVPVWLGDF--KQGDGFTPLAVAMQQGHDKVVAVLLEN----D 119
             T LH A S       +L+  +  D   K  +G T L  A+  G+  +V++L+ +    +
Sbjct: 705  ETVLHYAVSFNNSDLVYLLIAYGADVNAKTDNGLTALHYAVYDGNLDLVSLLISHGADVN 764

Query: 120  TRGKDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKVR--LPALHIAAKKDDTKAAKLLLE 175
             +   G T L  A+  G   +V +L+    D   K       LH A +  +     LL+ 
Sbjct: 765  AKTNSGETILYSAVDYGSPDLVYLLIAYGADVNAKTDNGETVLHYAVESGNLDLVSLLIH 824

Query: 176  VSCTVDPASVL---SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL 232
                V+ A  +   ++ +GN     +LIKN+ +    + SG T LH A+  GN  + N L
Sbjct: 825  NGANVNNAKTILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILHFAAESGNLNLVNWL 884

Query: 233  LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT 292
            +  +AD++    SG T LH A+  G +N+V +L++N A+    T  GET LH AA++   
Sbjct: 885  IKNKADIHAKTNSGETILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILHFAAKSGNL 944

Query: 293  DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSI 352
            +++  L++N A + A+   G T L  A + G +++  SL     + +  +  +G TAL  
Sbjct: 945  NLVNWLIKNKADIHAKTNSGETILHFAAESGNLNL-VSLLIHNGTDINTKTDDGLTALHY 1003

Query: 353  AQKLGYISVEESLKGVTETLIIAKGD--GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQ 410
            A + G +++         +L+I KG     K  +G T LH       + +  LL+   A 
Sbjct: 1004 AVESGNLNL--------VSLLIHKGIDVNAKTNSGETILHFAVDLGSLDLVSLLMVRGAD 1055

Query: 411  VDTPT--------------KMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
            V+  T               + + + L+ YGA  NA++ +G TPLH +      D+ ++L
Sbjct: 1056 VNAKTDDGLTALHYAVESDNLALVSLLMVYGADVNAKNNSGETPLHYAVIFNSLDLVSLL 1115

Query: 457  LEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
            + +GAD++     G T L+   +    ++ +S 
Sbjct: 1116 IHNGADINTKNNSGETVLNSIMEFNNCNILKSF 1148

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 233/518 (44%), Gaps = 69/518 (13%)

Query: 3    EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
            +G T+   AA  GH + +   L   V ++ A+A+   AL  A+  GH  +V  LL  GA 
Sbjct: 610  DGWTALRSAAWGGHTEVVSALLYAGVKVDCADADSRTALRAAAWGGHEDIVLNLLQHGAE 669

Query: 63   VDSATKKGNTALHIAS-LGEFLVPVWLGDF------KQGDGFTPLAVAM-----QQGHDK 110
            V+ A  +G TAL  A+ +G   +   L D       +  DG T L+VA       +GH  
Sbjct: 670  VNKADNEGRTALIAAAYMGHREIVEHLLDHGAEVNHEDVDGRTALSVAALCVPASKGHAS 729

Query: 111  VVAVLL----ENDTRGKDGFTPLAVAMQQGHDKVVAVLLE-------NDTRGKVRLPALH 159
            VV++L+    E D   KDG TPL VA  +GH  VV +LLE        D  G+  L A  
Sbjct: 730  VVSLLIDRGAEVDHCDKDGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDNNGRTPLLA-- 787

Query: 160  IAAKKDDTKAAKLLLEVSCTVDP-----ASVLS--STTGNAATGGYLIKNEHNPDVTSKS 212
             AA          LL     VD       +VLS  S  GN      L+    + +    +
Sbjct: 788  -AASMGHASVVNTLLFWGAAVDSIDSEGRTVLSIASAQGNVEVVRTLLDRGLDENHRDDA 846

Query: 213  GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
            G+TPLH+A+  G+  +   L+++ A  N     G  P  +AS  G  + V  LL+N +N 
Sbjct: 847  GWTPLHMAAFEGHRLICEALIEQGARTNEIDNDGRIPFILASQEGHYDCVQILLENKSNI 906

Query: 273  DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332
            D     G   L +AA     DI+ +L  +GA V+ +  +G   L I      +++E  L 
Sbjct: 907  DQRGYDGRNALRVAALEGHRDIVELLFSHGADVNCKDADGRPTLYI------LALENQLT 960

Query: 333  AAER-----SQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLT 387
             AE      + ++    EG TAL ++   G++ + + L  +     +   D EK     +
Sbjct: 961  MAEYFLENGANVEASDAEGRTALHVSCWQGHMEMVQVL--IAYHADVNAADNEKR----S 1014

Query: 388  PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE 447
             L   A +  V V +LL+++ A VD                        G T L ++A E
Sbjct: 1015 ALQSAAWQGHVKVVQLLIEHGAVVDHTCNQ-------------------GATALCIAAQE 1055

Query: 448  GHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
            GH D+  +LLEHGAD +HA + G TA+ +A K G+  +
Sbjct: 1056 GHIDVVQVLLEHGADPNHADQFGRTAMRVAAKNGHSQI 1093

Homo sapiens (taxid: 9606)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 150/549 (27%), Positives = 225/549 (40%), Gaps = 106/549 (19%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           +G+T    AA +G ++ +   L+  V+I+  N+ G  ALH+A   G   V  EL++ GAN
Sbjct: 205 KGYTLLHTAAASGQIEVVRHLLRLGVEIDEPNSFGNTALHIACYMGQDAVANELVNYGAN 264

Query: 63  VDSATKKGNTALHIASL---GEFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
           V+   +KG T LH A++   G   + + +      +F+  +G +PL +A   G      +
Sbjct: 265 VNQPNEKGFTPLHFAAVSTNGALCLELLVNNGADVNFQSKEGKSPLHMAAIHGRFTRSQI 324

Query: 115 LLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN--DT--RGKVRLPALHIAAKKDD 166
           L++N    D   K G TPL VA + GH+ +++ L+ N  DT  RG   +  LH+A     
Sbjct: 325 LIQNGSEIDCADKYGNTPLHVAARYGHELLISTLMTNGADTARRGIHDMFPLHLAVLFGF 384

Query: 167 TKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNE 226
           +   + LL         S LS+   +  + G+ I     PD     G T LH A+  GN 
Sbjct: 385 SDCCRKLLSSGQLYSIVSSLSNE--HVLSAGFDIN---TPD---NLGRTCLHAAASGGNV 436

Query: 227 GVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
              N+LL   AD+    K G TPLH A+  G     + L+   A+ +    +G TPLH A
Sbjct: 437 ECLNLLLSSGADLRRRDKFGRTPLHYAAANGSYQCTVTLVTAGASINEADCKGCTPLHYA 496

Query: 287 A-------------RANQTD--------------IIRILLRNGAQVDARAREGHTALSIA 319
           A              ++ TD               +  LL NGA    R ++G+TA+  A
Sbjct: 497 AASDTYRRAETHSGNSHDTDEEPLKESRMKEAFFCLEFLLDNGADPSLRDKQGYTAVHYA 556

Query: 320 QKLGY-----ISVEESLGAAERSQ-----------------------------LKKRGRE 345
              G      + +E S    E  +                             L  R  +
Sbjct: 557 AAYGNRQNLELLLEMSFNCLEDVESTIPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHK 616

Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
           G TAL +A + G     E L     + ++     ++ K   TPLH  A         LL+
Sbjct: 617 GRTALYLATERGSTECVEVLTSHGASALV-----KERKRKWTPLHAAAANGNTDSLHLLI 671

Query: 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
            +  + D    MDI                 G TPL L+   GH D   +LLE G+    
Sbjct: 672 DSGERADITDVMDI----------------HGQTPLMLAIMNGHVDCVHLLLEKGSTADA 715

Query: 466 AAKEGHTAL 474
           A K G TAL
Sbjct: 716 ADKRGRTAL 724

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q8BTI7|ANR52_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Mus musculus GN=Ankrd52 PE=2 SV=1

 Score =  124 bits (310), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 153/574 (26%), Positives = 230/574 (40%), Gaps = 108/574 (18%)

Query: 11  AARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKG 70
           AA +G ++ +   L+   +I+  NA G  ALH+A   G   V  EL++ GANV+    KG
Sbjct: 213 AAASGQIEVVKHLLRMGAEIDEPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPNDKG 272

Query: 71  NTALHIASL---GEFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
            T LH+A++   G   + + +      +++  +G +PL +A   G      +L++N    
Sbjct: 273 FTPLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEI 332

Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLEN--DT--RGKVRLPALHIAAKKDDTKAAKLLL 174
           D   K G TPL VA + GH+ +++ L+ N  DT  RG   +  LH+A     +   + LL
Sbjct: 333 DCADKFGNTPLHVAARYGHELLISTLMTNGADTARRGIHDMFPLHLAVLFGFSDCCRKLL 392

Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
                    S LS+   +  + G+ I     PD     G T LH A+  GN    N+LL 
Sbjct: 393 SSGQLYSIVSSLSNE--HVLSAGFDIN---TPD---SLGRTCLHAAASGGNVECLNLLLS 444

Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA------- 287
             AD+    K G TPLH A+  G     + L+   A  +    +G +PLH AA       
Sbjct: 445 SGADLRRRDKFGRTPLHYAAANGSYQCAVTLVTAGAGVNEADCKGCSPLHYAAASDTYRR 504

Query: 288 ---------------------RANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY-- 324
                                R      +  LL NGA    R R+G+TA+  A   G   
Sbjct: 505 AEPHTASSHDAEEDELLKESRRKEAFFCLEFLLDNGADPSLRDRQGYTAVHYAAAYGNRQ 564

Query: 325 ---ISVEESLGAAERSQ-----------------------------LKKRGREGHTALSI 352
              + +E S    E  +                             L  R  +G TAL +
Sbjct: 565 NLELLLEMSFNCLEDVESTVPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFL 624

Query: 353 AQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD 412
           A + G     E L     + +I     ++ K   TPLH  A         LL+ +  + D
Sbjct: 625 ATERGSTECVEVLTAHGASALI-----KERKRKWTPLHAAAASGHTDSLHLLIDSGERAD 679

Query: 413 ----------TPTKM-------DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
                     TP  +       D    LLE G+  +A  + G T LH  A  G  D  A 
Sbjct: 680 ITDVMDAYGQTPLMLAIMNGHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAA 739

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           LL+H A V     +G T + +A   G+ +V  +L
Sbjct: 740 LLDHDAFVLCRDFKGRTPIHLASACGHTAVLRTL 773

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
320545676	4230	ankyrin 2, isoform P [Drosophila melanog	0.850	0.106	0.478	1e-116
320545662	4329	ankyrin 2, isoform S [Drosophila melanog	0.850	0.103	0.478	1e-116
161082081	4083	ankyrin 2, isoform L [Drosophila melanog	0.850	0.110	0.478	1e-116
320545674	4223	ankyrin 2, isoform T [Drosophila melanog	0.850	0.106	0.478	1e-115
320545672	4352	ankyrin 2, isoform Q [Drosophila melanog	0.850	0.103	0.478	1e-115
161082096	4114	ankyrin 2, isoform F [Drosophila melanog	0.850	0.109	0.478	1e-115
161082085	2404	ankyrin 2, isoform M [Drosophila melanog	0.850	0.187	0.478	1e-115
161082106	4189	ankyrin 2, isoform J [Drosophila melanog	0.850	0.107	0.478	1e-115
161082099	2532	ankyrin 2, isoform G [Drosophila melanog	0.850	0.177	0.478	1e-115
442630831	4373	ankyrin 2, isoform V [Drosophila melanog	0.852	0.103	0.477	1e-115

>gi|320545676|ref|NP_001189069.1| ankyrin 2, isoform P [Drosophila melanogaster] gi|318069164|gb|ADV37506.1| ankyrin 2, isoform P [Drosophila melanogaster]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/510 (47%), Positives = 320/510 (62%), Gaps = 60/510 (11%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RGA
Sbjct: 16  GDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRGA 75

Query: 62  NVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
            VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV +
Sbjct: 76  IVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVRL 135

Query: 115 LLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KAA
Sbjct: 136 LLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAA 195

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
            LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +AN
Sbjct: 196 TLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIAN 229

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+ 
Sbjct: 230 LLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSG 289

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
              ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TAL
Sbjct: 290 HEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTAL 348

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNA 409
            +A   G++        V + L+    D      NG TPLH+  +++R+ V ELLL++ A
Sbjct: 349 HVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGA 401

Query: 410 QVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
            +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  +
Sbjct: 402 SISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIRI 461

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           LL +GA V   A+E  T L IA +LG + +
Sbjct: 462 LLRNGAQVDARAREQQTPLHIASRLGNVDI 491

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320545662|ref|NP_001189064.1| ankyrin 2, isoform S [Drosophila melanogaster] gi|318069159|gb|ADV37501.1| ankyrin 2, isoform S [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/510 (47%), Positives = 320/510 (62%), Gaps = 60/510 (11%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RGA
Sbjct: 9   GDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRGA 68

Query: 62  NVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
            VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV +
Sbjct: 69  IVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVRL 128

Query: 115 LLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KAA
Sbjct: 129 LLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAA 188

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
            LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +AN
Sbjct: 189 TLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIAN 222

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+ 
Sbjct: 223 LLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSG 282

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
              ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TAL
Sbjct: 283 HEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTAL 341

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNA 409
            +A   G++        V + L+    D      NG TPLH+  +++R+ V ELLL++ A
Sbjct: 342 HVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGA 394

Query: 410 QVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
            +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  +
Sbjct: 395 SISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIRI 454

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           LL +GA V   A+E  T L IA +LG + +
Sbjct: 455 LLRNGAQVDARAREQQTPLHIASRLGNVDI 484

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161082081|ref|NP_729285.3| ankyrin 2, isoform L [Drosophila melanogaster] gi|158028463|gb|AAF50525.4| ankyrin 2, isoform L [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/510 (47%), Positives = 320/510 (62%), Gaps = 60/510 (11%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RGA
Sbjct: 9   GDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRGA 68

Query: 62  NVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
            VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV +
Sbjct: 69  IVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVRL 128

Query: 115 LLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KAA
Sbjct: 129 LLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAA 188

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
            LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +AN
Sbjct: 189 TLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIAN 222

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+ 
Sbjct: 223 LLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSG 282

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
              ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TAL
Sbjct: 283 HEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTAL 341

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNA 409
            +A   G++        V + L+    D      NG TPLH+  +++R+ V ELLL++ A
Sbjct: 342 HVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGA 394

Query: 410 QVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
            +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  +
Sbjct: 395 SISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIRI 454

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           LL +GA V   A+E  T L IA +LG + +
Sbjct: 455 LLRNGAQVDARAREQQTPLHIASRLGNVDI 484

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320545674|ref|NP_001189068.1| ankyrin 2, isoform T [Drosophila melanogaster] gi|318069163|gb|ADV37505.1| ankyrin 2, isoform T [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/510 (47%), Positives = 320/510 (62%), Gaps = 60/510 (11%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RGA
Sbjct: 9   GDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRGA 68

Query: 62  NVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
            VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV +
Sbjct: 69  IVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVRL 128

Query: 115 LLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KAA
Sbjct: 129 LLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAA 188

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
            LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +AN
Sbjct: 189 TLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIAN 222

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+ 
Sbjct: 223 LLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSG 282

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
              ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TAL
Sbjct: 283 HEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTAL 341

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNA 409
            +A   G++        V + L+    D      NG TPLH+  +++R+ V ELLL++ A
Sbjct: 342 HVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGA 394

Query: 410 QVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
            +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  +
Sbjct: 395 SISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIRI 454

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           LL +GA V   A+E  T L IA +LG + +
Sbjct: 455 LLRNGAQVDARAREQQTPLHIASRLGNVDI 484

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320545672|ref|NP_001189067.1| ankyrin 2, isoform Q [Drosophila melanogaster] gi|318069162|gb|ADV37504.1| ankyrin 2, isoform Q [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/510 (47%), Positives = 320/510 (62%), Gaps = 60/510 (11%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RGA
Sbjct: 16  GDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRGA 75

Query: 62  NVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
            VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV +
Sbjct: 76  IVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVRL 135

Query: 115 LLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KAA
Sbjct: 136 LLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAA 195

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
            LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +AN
Sbjct: 196 TLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIAN 229

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+ 
Sbjct: 230 LLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSG 289

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
              ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TAL
Sbjct: 290 HEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTAL 348

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNA 409
            +A   G++        V + L+    D      NG TPLH+  +++R+ V ELLL++ A
Sbjct: 349 HVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGA 401

Query: 410 QVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
            +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  +
Sbjct: 402 SISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIRI 461

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           LL +GA V   A+E  T L IA +LG + +
Sbjct: 462 LLRNGAQVDARAREQQTPLHIASRLGNVDI 491

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161082096|ref|NP_001097535.1| ankyrin 2, isoform F [Drosophila melanogaster] gi|158028467|gb|ABW08485.1| ankyrin 2, isoform F [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/510 (47%), Positives = 320/510 (62%), Gaps = 60/510 (11%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RGA
Sbjct: 9   GDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRGA 68

Query: 62  NVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
            VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV +
Sbjct: 69  IVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVRL 128

Query: 115 LLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KAA
Sbjct: 129 LLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAA 188

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
            LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +AN
Sbjct: 189 TLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIAN 222

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+ 
Sbjct: 223 LLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSG 282

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
              ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TAL
Sbjct: 283 HEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTAL 341

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNA 409
            +A   G++        V + L+    D      NG TPLH+  +++R+ V ELLL++ A
Sbjct: 342 HVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGA 394

Query: 410 QVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
            +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  +
Sbjct: 395 SISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIRI 454

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           LL +GA V   A+E  T L IA +LG + +
Sbjct: 455 LLRNGAQVDARAREQQTPLHIASRLGNVDI 484

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161082085|ref|NP_648148.2| ankyrin 2, isoform M [Drosophila melanogaster] gi|158028464|gb|AAN12046.2| ankyrin 2, isoform M [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/510 (47%), Positives = 321/510 (62%), Gaps = 60/510 (11%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RGA
Sbjct: 9   GDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRGA 68

Query: 62  NVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
            VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV +
Sbjct: 69  IVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVRL 128

Query: 115 LLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KAA
Sbjct: 129 LLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAA 188

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
            LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +AN
Sbjct: 189 TLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIAN 222

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+ 
Sbjct: 223 LLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSG 282

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
              ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TAL
Sbjct: 283 HEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTAL 341

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGE-KHKNGLTPLHLCAQEDRVGVAELLLKNNA 409
            +A   G++        V + L+    D   +  NG TPLH+  +++R+ V ELLL++ A
Sbjct: 342 HVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGA 394

Query: 410 QVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
            +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  +
Sbjct: 395 SISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIRI 454

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           LL +GA V   A+E  T L IA +LG + +
Sbjct: 455 LLRNGAQVDARAREQQTPLHIASRLGNVDI 484

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161082106|ref|NP_001097538.1| ankyrin 2, isoform J [Drosophila melanogaster] gi|158028469|gb|ABW08487.1| ankyrin 2, isoform J [Drosophila melanogaster]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/510 (47%), Positives = 320/510 (62%), Gaps = 60/510 (11%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RGA
Sbjct: 9   GDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRGA 68

Query: 62  NVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
            VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV +
Sbjct: 69  IVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVRL 128

Query: 115 LLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KAA
Sbjct: 129 LLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAA 188

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
            LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +AN
Sbjct: 189 TLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIAN 222

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+ 
Sbjct: 223 LLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSG 282

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
              ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TAL
Sbjct: 283 HEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTAL 341

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNA 409
            +A   G++        V + L+    D      NG TPLH+  +++R+ V ELLL++ A
Sbjct: 342 HVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGA 394

Query: 410 QVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
            +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  +
Sbjct: 395 SISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIRI 454

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           LL +GA V   A+E  T L IA +LG + +
Sbjct: 455 LLRNGAQVDARAREQQTPLHIASRLGNVDI 484

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161082099|ref|NP_001097536.1| ankyrin 2, isoform G [Drosophila melanogaster] gi|158028468|gb|ABW08486.1| ankyrin 2, isoform G [Drosophila melanogaster]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/510 (47%), Positives = 321/510 (62%), Gaps = 60/510 (11%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RGA
Sbjct: 9   GDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRGA 68

Query: 62  NVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAV 114
            VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV +
Sbjct: 69  IVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVRL 128

Query: 115 LLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KAA
Sbjct: 129 LLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKAA 188

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
            LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +AN
Sbjct: 189 TLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIAN 222

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+ 
Sbjct: 223 LLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARSG 282

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
              ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TAL
Sbjct: 283 HEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTAL 341

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGE-KHKNGLTPLHLCAQEDRVGVAELLLKNNA 409
            +A   G++        V + L+    D   +  NG TPLH+  +++R+ V ELLL++ A
Sbjct: 342 HVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHGA 394

Query: 410 QVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
            +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  +
Sbjct: 395 SISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIRI 454

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           LL +GA V   A+E  T L IA +LG + +
Sbjct: 455 LLRNGAQVDARAREQQTPLHIASRLGNVDI 484

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630831|ref|NP_001261535.1| ankyrin 2, isoform V [Drosophila melanogaster] gi|440215440|gb|AGB94230.1| ankyrin 2, isoform V [Drosophila melanogaster]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/511 (47%), Positives = 321/511 (62%), Gaps = 60/511 (11%)

Query: 1   SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
           +G+G+TSFLRAARAG+L++++EHLKNN+DINT+NANGLNALHLASKDGH+HVV+ELL RG
Sbjct: 158 AGDGNTSFLRAARAGNLERVLEHLKNNIDINTSNANGLNALHLASKDGHIHVVSELLRRG 217

Query: 61  ANVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVA 113
           A VDSATKKGNTALHIASL   E +V + L      + +  +GFTPL +A Q+ HD VV 
Sbjct: 218 AIVDSATKKGNTALHIASLAGQEEVVKLLLEHNASVNVQSQNGFTPLYMAAQENHDAVVR 277

Query: 114 VLLENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKA 169
           +LL N        +DGFTPLAVAMQQGHDKVVAVLLE+DTRGKVRLPALHIAAKKDD KA
Sbjct: 278 LLLSNGANQSLATEDGFTPLAVAMQQGHDKVVAVLLESDTRGKVRLPALHIAAKKDDVKA 337

Query: 170 AKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA 229
           A LLL+                          N+HNPDVTSKSGFTPLHIASHYGN+ +A
Sbjct: 338 ATLLLD--------------------------NDHNPDVTSKSGFTPLHIASHYGNQNIA 371

Query: 230 NILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA 289
           N+L+ K ADVN+SAK  ++PLHVA+  G  N+V  LL+   N +  T  G TPLH AAR+
Sbjct: 372 NLLIQKGADVNYSAKHNISPLHVAAKWGKTNMVSLLLEKGGNIEAKTRDGLTPLHCAARS 431

Query: 290 NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTA 349
               ++ +LL  GA + A+ + G   L +A +  ++     L    R+ + +   +  TA
Sbjct: 432 GHEQVVDMLLERGAPISAKTKNGLAPLHMAAQGEHVDAARIL-LYHRAPVDEVTVDYLTA 490

Query: 350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNN 408
           L +A   G++        V + L+    D      NG TPLH+  +++R+ V ELLL++ 
Sbjct: 491 LHVAAHCGHVR-------VAKLLLDRNADANARALNGFTPLHIACKKNRLKVVELLLRHG 543

Query: 409 AQVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSA 454
           A +   T+              M+I   LL++ A P+  +V G TPLHL+A     D+  
Sbjct: 544 ASISATTESGLTPLHVAAFMGCMNIVIYLLQHDASPDVPTVRGETPLHLAARANQTDIIR 603

Query: 455 MLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           +LL +GA V   A+E  T L IA +LG + +
Sbjct: 604 ILLRNGAQVDARAREQQTPLHIASRLGNVDI 634

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
ZFIN|ZDB-GENE-041010-165	3538	ank2b "ankyrin 2b, neuronal" [	0.863	0.129	0.353	1.8e-62
UNIPROTKB|F1LM13	1783	Ank3 "Protein Ank3" [Rattus no	0.818	0.242	0.365	3.4e-62
UNIPROTKB|F1LPH6	1961	Ank3 "Protein Ank3" [Rattus no	0.818	0.220	0.365	4e-62
UNIPROTKB|F1PJ90	1782	ANK3 "Uncharacterized protein"	0.856	0.254	0.339	1.7e-61
UNIPROTKB|F1NG08	3694	Gga.53822 "Uncharacterized pro	0.863	0.123	0.350	4.7e-61
UNIPROTKB|K7GLA8	1847	ANK3 "Uncharacterized protein"	0.856	0.245	0.339	5.1e-61
UNIPROTKB|F1NJ80	1699	ANK3 "Uncharacterized protein"	0.848	0.264	0.341	5.8e-61
UNIPROTKB|F1NNX8	1737	ANK3 "Uncharacterized protein"	0.848	0.258	0.341	6.1e-61
UNIPROTKB|F1NNX6	1824	ANK3 "Uncharacterized protein"	0.848	0.246	0.341	6.7e-61
UNIPROTKB|F1NNX7	1915	ANK3 "Uncharacterized protein"	0.848	0.234	0.341	7.3e-61

ZFIN|ZDB-GENE-041010-165 ank2b "ankyrin 2b, neuronal" [Danio rerio (taxid:7955)]

 Score = 655 (235.6 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 180/509 (35%), Positives = 270/509 (53%)

Query:     3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
             + +TSFLRAARAG++DK++E+LK  VDI              +K+GH+ +V ELL RG++
Sbjct:    31 DSNTSFLRAARAGNIDKVLEYLKGGVDIGTSNQNGLNALHLAAKEGHVDLVQELLGRGSS 90

Query:    63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRG 122
             VDSATKKGNTALHIASL         G   QGD    + +  ++G +         + + 
Sbjct:    91 VDSATKKGNTALHIASLA--------G---QGD---VVKILSKRGANI--------NAQS 128

Query:   123 KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRL-----P-ALHIXXXXXXXXXXXXXXEV 176
             ++GFTPL +A Q+ H  VV  LLEN     +       P A+ +              + 
Sbjct:   129 QNGFTPLYMASQENHLDVVRYLLENGGNQSIATEDGFTPLAIALQQGHNQVVSILLENDT 188

Query:   177 SCTVD-PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235
                V  PA  +++   +  +   L++N+HN DV SKSGFTPLHIA+HYGN  VA +LL++
Sbjct:   189 KGKVRLPALHIAARKDDTKSAALLLQNDHNADVQSKSGFTPLHIAAHYGNVNVATLLLNR 248

Query:   236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII 295
              A V+F+A++G+TPLHVAS  G  N+V  LL   A  D  T  G TPLH AAR+     +
Sbjct:   249 GAAVDFTARNGITPLHVASKRGNTNMVHLLLDRGAQIDAKTRDGLTPLHCAARSGHDTAV 308

Query:   296 RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
              +LL  GA + AR + G + L +A +  ++   + L    ++ +     +  TAL +A  
Sbjct:   309 ELLLERGAPMLARTKNGLSPLHMAAQGDHVECVKHL-LQHKAPVDDVTLDYLTALHVAAH 367

Query:   356 LGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP 414
              G+  V       T+ L+  + +   +  NG TPLH+  +++RV V ELL+K  A +   
Sbjct:   368 CGHYRV-------TKLLLDKRANPNARALNGFTPLHIACKKNRVKVMELLIKYGAFIQAI 420

Query:   415 TK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
             T+              ++I   LL+ GA P+  ++ G T LH++A  G  ++   LL +G
Sbjct:   421 TESGLTPIHVAAFMGHLNIVLLLLQNGASPDVSNIRGETALHMAARAGQMEVVRCLLRNG 480

Query:   461 ADVSHAAKEGHTALSIAQKLGYISVEESL 489
             A V   A+E  T L IA +LG   + + L
Sbjct:   481 AMVDARAREDQTPLHIASRLGKTEIVQLL 509

GO:0006508 "proteolysis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1LM13 Ank3 "Protein Ank3" [Rattus norvegicus (taxid:10116)]

 Score = 649 (233.5 bits), Expect = 3.4e-62, P = 3.4e-62
 Identities = 194/531 (36%), Positives = 277/531 (52%)

Query:     3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
             + + S+LRAARAGHL+K ++++KN VD+              SK+GH+ VV+ELL R AN
Sbjct:     2 DANASYLRAARAGHLEKALDYIKNGVDVNICNQNGLNALHLASKEGHVEVVSELLQREAN 61

Query:    63 VDSATKKGNTALHIASL-GEF-LVPVWL--G---DFKQGDGFTPLAVAMQQGHDKVVAVL 115
             VD+ATKKGNTALHIASL G+  +V V +  G   + +  +GFTPL +A Q+ H +VV  L
Sbjct:    62 VDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVRFL 121

Query:   116 LENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIXXXXXXXXXXX 171
             L+N        +DGFTPLAVA+QQGHD+VV++LLENDT+GKVRLPALHI           
Sbjct:   122 LDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAAR-------- 173

Query:   172 XXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI 231
                               T  AA    L++N+ N D+ SKSGFTPLHIA+HYGN  VA +
Sbjct:   174 ---------------KDDTKAAAL---LLQNDTNADIESKSGFTPLHIAAHYGNINVATL 215

Query:   232 LLDKRADVNFSAK-------------------------------SGLTPLHVASFMGCMN 260
             LL++ A V+F+A+                                GLTPLH  +  G   
Sbjct:   216 LLNRAAAVDFTARVSTWQSAESQGISNMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQ 275

Query:   261 IVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
             +V  LL   A     T  G +PLH+A + +  + +++LL++   VD    +  TAL +A 
Sbjct:   276 VVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAA 335

Query:   321 KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE 380
               G+  V + L   +++    +   G T L IA K   I V E        L++  G   
Sbjct:   336 HCGHYKVAKVL-LDKKANPNAKALNGFTPLHIACKKNRIRVME--------LLLKHGASI 386

Query:   381 KH--KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF 438
             +   ++GLTP+H+ A    V                   +I + L+ +GA PN  +V G 
Sbjct:   387 QAVTESGLTPIHVAAFMGHV-------------------NIVSQLMHHGASPNTTNVRGE 427

Query:   439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
             T LH++A  G A++   L++ GA V   AK+  T L I+ +LG   + + L
Sbjct:   428 TALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQL 478

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1LPH6 Ank3 "Protein Ank3" [Rattus norvegicus (taxid:10116)]

 Score = 649 (233.5 bits), Expect = 4.0e-62, P = 4.0e-62
 Identities = 194/531 (36%), Positives = 277/531 (52%)

Query:     3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
             + + S+LRAARAGHL+K ++++KN VD+              SK+GH+ VV+ELL R AN
Sbjct:     2 DANASYLRAARAGHLEKALDYIKNGVDVNICNQNGLNALHLASKEGHVEVVSELLQREAN 61

Query:    63 VDSATKKGNTALHIASL-GEF-LVPVWL--G---DFKQGDGFTPLAVAMQQGHDKVVAVL 115
             VD+ATKKGNTALHIASL G+  +V V +  G   + +  +GFTPL +A Q+ H +VV  L
Sbjct:    62 VDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVRFL 121

Query:   116 LENDTRG----KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIXXXXXXXXXXX 171
             L+N        +DGFTPLAVA+QQGHD+VV++LLENDT+GKVRLPALHI           
Sbjct:   122 LDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAAR-------- 173

Query:   172 XXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI 231
                               T  AA    L++N+ N D+ SKSGFTPLHIA+HYGN  VA +
Sbjct:   174 ---------------KDDTKAAAL---LLQNDTNADIESKSGFTPLHIAAHYGNINVATL 215

Query:   232 LLDKRADVNFSAK-------------------------------SGLTPLHVASFMGCMN 260
             LL++ A V+F+A+                                GLTPLH  +  G   
Sbjct:   216 LLNRAAAVDFTARVSTWQSAESQGISNMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQ 275

Query:   261 IVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
             +V  LL   A     T  G +PLH+A + +  + +++LL++   VD    +  TAL +A 
Sbjct:   276 VVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAA 335

Query:   321 KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE 380
               G+  V + L   +++    +   G T L IA K   I V E        L++  G   
Sbjct:   336 HCGHYKVAKVL-LDKKANPNAKALNGFTPLHIACKKNRIRVME--------LLLKHGASI 386

Query:   381 KH--KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF 438
             +   ++GLTP+H+ A    V                   +I + L+ +GA PN  +V G 
Sbjct:   387 QAVTESGLTPIHVAAFMGHV-------------------NIVSQLMHHGASPNTTNVRGE 427

Query:   439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
             T LH++A  G A++   L++ GA V   AK+  T L I+ +LG   + + L
Sbjct:   428 TALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQL 478

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PJ90 ANK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 637 (229.3 bits), Expect = 1.7e-61, Sum P(2) = 1.7e-61
 Identities = 174/513 (33%), Positives = 266/513 (51%)

Query:     3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
             + + S+LRAARAGHL+K ++++KN VDI              SK+GH+ VV+ELL R AN
Sbjct:    40 DANASYLRAARAGHLEKALDYIKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREAN 99

Query:    63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
             VD+ATKKGNTALHIASL                           G  +VV VL+ N    
Sbjct:   100 VDAATKKGNTALHIASLA--------------------------GQAEVVKVLVTNGANV 133

Query:   119 DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRL-----P-ALHIXXXXXXXXXXXX 172
             + + ++GFTPL +A Q+ H +VV  LL+N     +       P A+ +            
Sbjct:   134 NAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLL 193

Query:   173 XXEVSCTVD-PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI 231
               +    V  PA  +++   +      L++N++N D+ SKSGFTPLHIA+HYGN  VA +
Sbjct:   194 ENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADIESKSGFTPLHIAAHYGNINVATL 253

Query:   232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ 291
             LL++ A V+F+A++ +TPLHVAS  G  N+V  LL   A  D  T  G TPLH  AR+  
Sbjct:   254 LLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGH 313

Query:   292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALS 351
               ++ +LL   A + ++ + G + L +A +  +++  + L       +     +  TAL 
Sbjct:   314 EQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLL-LQHNVPVDDVTNDYLTALH 372

Query:   352 IAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQ 410
             +A   G+  V        + L+  K +   K  NG TPLH+  +++R+ V ELLLK+ A 
Sbjct:   373 VAAHCGHYKV-------AKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGAS 425

Query:   411 VDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
             +   T+              ++I + L+ +GA PN  +V G T LH++A  G A++   L
Sbjct:   426 IQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYL 485

Query:   457 LEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
             ++ GA V   AK+  T L I+ +LG   + + L
Sbjct:   486 VQDGAQVEAKAKDDQTPLHISARLGKADIVQQL 518

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NG08 Gga.53822 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 631 (227.2 bits), Expect = 4.7e-61, Sum P(2) = 4.7e-61
 Identities = 181/517 (35%), Positives = 275/517 (53%)

Query:     3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
             + + SFLRAARAG+LDK++E+LK+ +DI              +K+GH+ +V ELL RG+ 
Sbjct:     6 DSNASFLRAARAGNLDKVVEYLKSGIDINTCNQNGLNALHLAAKEGHVGLVQELLERGSA 65

Query:    63 VDSATKKGNTALHIASL-GEF-LVPVWLGD-----FKQGDGFTPLAVAMQQGHDKVVAVL 115
             VDSATKKGNTALHIASL G+  +V V + +      +  +GFTPL +A Q+ H +VV  L
Sbjct:    66 VDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIEVVKYL 125

Query:   116 LENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIXXXXXXXXXXXXXXE 175
             LEN   G +  T    A + G   + AV L+   +G  +  A+ +               
Sbjct:   126 LEN---GANQST----ATEDGFTPL-AVALQ---QGHNQAVAILLENDTKGKVRL----- 169

Query:   176 VSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK--------SGFTPLHIASHYGNEG 227
                   PA  +++   +  +   L++N+HN DV SK        SGFTPLHIA+HYGN  
Sbjct:   170 ------PALHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVN 223

Query:   228 VANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA 287
             VA +LL++ A V+F+A++G+TPLHVAS  G  N+V  LL      D  T  G TPLH AA
Sbjct:   224 VATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAA 283

Query:   288 RANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGH 347
             R+    ++ +LL  GA + AR + G + L +A +  ++   + L    ++ +     +  
Sbjct:   284 RSGHDQVVELLLERGAPLLARTKNGLSPLHMAAQGDHVECVKHL-LQHKAPVDDVTLDYL 342

Query:   348 TALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLK 406
             TAL +A   G+  V       T+ L+  + +   +  NG TPLH+  +++R+ V ELL+K
Sbjct:   343 TALHVAAHCGHYRV-------TKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELLVK 395

Query:   407 NNAQVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM 452
               A +   T+              ++I   LL+ GA P+  ++ G T LH++A  G  ++
Sbjct:   396 YGASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEV 455

Query:   453 SAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
                LL +GA V   A+E  T L IA +LG   + + L
Sbjct:   456 VRCLLRNGALVDARAREEQTPLHIASRLGKTEIVQLL 492

GO:0003283 "atrial septum development" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0010881 "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0015459 "potassium channel regulator activity" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0033292 "T-tubule organization" evidence=IEA

GO:0034394 "protein localization to cell surface" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0060307 "regulation of ventricular cardiac muscle cell membrane repolarization" evidence=IEA

GO:0070972 "protein localization to endoplasmic reticulum" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=IEA

GO:0086014 "regulation of atrial cardiac muscle cell action potential" evidence=IEA

GO:0086015 "regulation of SA node cell action potential" evidence=IEA

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=IEA

GO:1901018 "positive regulation of potassium ion transmembrane transporter activity" evidence=IEA

GO:1901021 "positive regulation of calcium ion transmembrane transporter activity" evidence=IEA

GO:2001259 "positive regulation of cation channel activity" evidence=IEA

UNIPROTKB|K7GLA8 ANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 633 (227.9 bits), Expect = 5.1e-61, Sum P(2) = 5.1e-61
 Identities = 174/513 (33%), Positives = 266/513 (51%)

Query:     3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
             + + S+LRAARAGHL+K ++++KN VDI              SK+GH+ VV+ELL R A+
Sbjct:     2 DANASYLRAARAGHLEKALDYIKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREAS 61

Query:    63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
             VD+ATKKGNTALHIASL                           G  +VV VL+ N    
Sbjct:    62 VDAATKKGNTALHIASLA--------------------------GQAEVVKVLVTNGANV 95

Query:   119 DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRL-----P-ALHIXXXXXXXXXXXX 172
             + + ++GFTPL +A Q+ H +VV  LL+N     +       P A+ +            
Sbjct:    96 NAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLL 155

Query:   173 XXEVSCTVD-PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI 231
               +    V  PA  +++   +      L++N++N DV SKSGFTPLHIA+HYGN  VA +
Sbjct:   156 ENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATL 215

Query:   232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ 291
             LL++ A V+F+A++ +TPLHVAS  G  N+V  LL   A  D  T  G TPLH  AR+  
Sbjct:   216 LLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGH 275

Query:   292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALS 351
               ++ +LL   A + ++ + G + L +A +  +++  + L       +     +  TAL 
Sbjct:   276 EQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLL-LQHNVPVDDVTNDYLTALH 334

Query:   352 IAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQ 410
             +A   G+  V        + L+  K +   K  NG TPLH+  +++R+ V ELLLK+ A 
Sbjct:   335 VAAHCGHYKV-------AKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGAS 387

Query:   411 VDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
             +   T+              ++I + L+ +GA PN  +V G T LH++A  G A++   L
Sbjct:   388 IQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYL 447

Query:   457 LEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
             ++ GA V   AK+  T L I+ +LG   + + L
Sbjct:   448 VQDGAQVEAKAKDDQTPLHISARLGKADIVQQL 480

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NJ80 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 637 (229.3 bits), Expect = 5.8e-61, P = 5.8e-61
 Identities = 174/509 (34%), Positives = 266/509 (52%)

Query:     7 SFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSA 66
             S+LRAARAG+L+K +++LK+ VDI              SK+GH+ VV+EL+ RGA+VD+A
Sbjct:     2 SYLRAARAGNLEKALDYLKSGVDINISNQNGLNALHLASKEGHVEVVSELIQRGASVDAA 61

Query:    67 TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRG 122
             TKKGNTALHIASL                           G  +VV VL+ N    + + 
Sbjct:    62 TKKGNTALHIASLA--------------------------GQAEVVKVLVTNRANVNAQS 95

Query:   123 KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRL-----P-ALHIXXXXXXXXXXXXXXEV 176
             ++GFTPL +A Q+ H +VV  LL+N     +       P A+ +              + 
Sbjct:    96 QNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDT 155

Query:   177 SCTVD-PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235
                V  PA  +++   +      L++N+HN DV SKSGFTPLHIA+HYGN  VA +LL++
Sbjct:   156 KGKVRLPALHIAARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNR 215

Query:   236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII 295
              A V+F+A++ +TPLHVAS  G  N+V  LL   A  D  T  G TPLH  AR+    ++
Sbjct:   216 GAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVV 275

Query:   296 RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
              +LL  GA + ++ + G + L +A +  +++  + L       +     +  TAL +A  
Sbjct:   276 EMLLDRGAPILSKTKNGLSPLHMATQGDHLNCVQLL-IQHNVPVDDVTNDYLTALHVAAH 334

Query:   356 LGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP 414
              G+  V        + L+  K +   K  NG TPLH+  +++R+ V ELLLK+ A +   
Sbjct:   335 CGHYKV-------AKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAV 387

Query:   415 TK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
             T+              ++I + L+ +GA PN  +V G T LH++A  G  ++   L+++G
Sbjct:   388 TESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLVQNG 447

Query:   461 ADVSHAAKEGHTALSIAQKLGYISVEESL 489
             A V   AK+  T L I+ +LG   + + L
Sbjct:   448 AQVEAKAKDDQTPLHISARLGKADIVQQL 476

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX8 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 637 (229.3 bits), Expect = 6.1e-61, P = 6.1e-61
 Identities = 174/509 (34%), Positives = 266/509 (52%)

Query:     7 SFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSA 66
             S+LRAARAG+L+K +++LK+ VDI              SK+GH+ VV+EL+ RGA+VD+A
Sbjct:     2 SYLRAARAGNLEKALDYLKSGVDINISNQNGLNALHLASKEGHVEVVSELIQRGASVDAA 61

Query:    67 TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRG 122
             TKKGNTALHIASL                           G  +VV VL+ N    + + 
Sbjct:    62 TKKGNTALHIASLA--------------------------GQAEVVKVLVTNRANVNAQS 95

Query:   123 KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRL-----P-ALHIXXXXXXXXXXXXXXEV 176
             ++GFTPL +A Q+ H +VV  LL+N     +       P A+ +              + 
Sbjct:    96 QNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDT 155

Query:   177 SCTVD-PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235
                V  PA  +++   +      L++N+HN DV SKSGFTPLHIA+HYGN  VA +LL++
Sbjct:   156 KGKVRLPALHIAARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNR 215

Query:   236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII 295
              A V+F+A++ +TPLHVAS  G  N+V  LL   A  D  T  G TPLH  AR+    ++
Sbjct:   216 GAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVV 275

Query:   296 RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
              +LL  GA + ++ + G + L +A +  +++  + L       +     +  TAL +A  
Sbjct:   276 EMLLDRGAPILSKTKNGLSPLHMATQGDHLNCVQLL-IQHNVPVDDVTNDYLTALHVAAH 334

Query:   356 LGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP 414
              G+  V        + L+  K +   K  NG TPLH+  +++R+ V ELLLK+ A +   
Sbjct:   335 CGHYKV-------AKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAV 387

Query:   415 TK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
             T+              ++I + L+ +GA PN  +V G T LH++A  G  ++   L+++G
Sbjct:   388 TESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLVQNG 447

Query:   461 ADVSHAAKEGHTALSIAQKLGYISVEESL 489
             A V   AK+  T L I+ +LG   + + L
Sbjct:   448 AQVEAKAKDDQTPLHISARLGKADIVQQL 476

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX6 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 637 (229.3 bits), Expect = 6.7e-61, P = 6.7e-61
 Identities = 174/509 (34%), Positives = 266/509 (52%)

Query:     7 SFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSA 66
             S+LRAARAG+L+K +++LK+ VDI              SK+GH+ VV+EL+ RGA+VD+A
Sbjct:     2 SYLRAARAGNLEKALDYLKSGVDINISNQNGLNALHLASKEGHVEVVSELIQRGASVDAA 61

Query:    67 TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRG 122
             TKKGNTALHIASL                           G  +VV VL+ N    + + 
Sbjct:    62 TKKGNTALHIASLA--------------------------GQAEVVKVLVTNRANVNAQS 95

Query:   123 KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRL-----P-ALHIXXXXXXXXXXXXXXEV 176
             ++GFTPL +A Q+ H +VV  LL+N     +       P A+ +              + 
Sbjct:    96 QNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDT 155

Query:   177 SCTVD-PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235
                V  PA  +++   +      L++N+HN DV SKSGFTPLHIA+HYGN  VA +LL++
Sbjct:   156 KGKVRLPALHIAARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNR 215

Query:   236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII 295
              A V+F+A++ +TPLHVAS  G  N+V  LL   A  D  T  G TPLH  AR+    ++
Sbjct:   216 GAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVV 275

Query:   296 RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
              +LL  GA + ++ + G + L +A +  +++  + L       +     +  TAL +A  
Sbjct:   276 EMLLDRGAPILSKTKNGLSPLHMATQGDHLNCVQLL-IQHNVPVDDVTNDYLTALHVAAH 334

Query:   356 LGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP 414
              G+  V        + L+  K +   K  NG TPLH+  +++R+ V ELLLK+ A +   
Sbjct:   335 CGHYKV-------AKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAV 387

Query:   415 TK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
             T+              ++I + L+ +GA PN  +V G T LH++A  G  ++   L+++G
Sbjct:   388 TESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLVQNG 447

Query:   461 ADVSHAAKEGHTALSIAQKLGYISVEESL 489
             A V   AK+  T L I+ +LG   + + L
Sbjct:   448 AQVEAKAKDDQTPLHISARLGKADIVQQL 476

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NNX7 ANK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 637 (229.3 bits), Expect = 7.3e-61, P = 7.3e-61
 Identities = 174/509 (34%), Positives = 266/509 (52%)

Query:     7 SFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSA 66
             S+LRAARAG+L+K +++LK+ VDI              SK+GH+ VV+EL+ RGA+VD+A
Sbjct:     2 SYLRAARAGNLEKALDYLKSGVDINISNQNGLNALHLASKEGHVEVVSELIQRGASVDAA 61

Query:    67 TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRG 122
             TKKGNTALHIASL                           G  +VV VL+ N    + + 
Sbjct:    62 TKKGNTALHIASLA--------------------------GQAEVVKVLVTNRANVNAQS 95

Query:   123 KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRL-----P-ALHIXXXXXXXXXXXXXXEV 176
             ++GFTPL +A Q+ H +VV  LL+N     +       P A+ +              + 
Sbjct:    96 QNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDT 155

Query:   177 SCTVD-PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235
                V  PA  +++   +      L++N+HN DV SKSGFTPLHIA+HYGN  VA +LL++
Sbjct:   156 KGKVRLPALHIAARKDDTKAAALLLQNDHNADVESKSGFTPLHIAAHYGNINVATLLLNR 215

Query:   236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII 295
              A V+F+A++ +TPLHVAS  G  N+V  LL   A  D  T  G TPLH  AR+    ++
Sbjct:   216 GAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVV 275

Query:   296 RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
              +LL  GA + ++ + G + L +A +  +++  + L       +     +  TAL +A  
Sbjct:   276 EMLLDRGAPILSKTKNGLSPLHMATQGDHLNCVQLL-IQHNVPVDDVTNDYLTALHVAAH 334

Query:   356 LGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP 414
              G+  V        + L+  K +   K  NG TPLH+  +++R+ V ELLLK+ A +   
Sbjct:   335 CGHYKV-------AKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAV 387

Query:   415 TK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
             T+              ++I + L+ +GA PN  +V G T LH++A  G  ++   L+++G
Sbjct:   388 TESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARAGQTEVVRYLVQNG 447

Query:   461 ADVSHAAKEGHTALSIAQKLGYISVEESL 489
             A V   AK+  T L I+ +LG   + + L
Sbjct:   448 AQVEAKAKDDQTPLHISARLGKADIVQQL 476

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	529
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-20
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-19
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-16
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-15
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-13
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-13
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	9e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-09
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	8e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	5e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-05
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	7e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
PHA02795	437	PHA02795, PHA02795, ankyrin-like protein; Provisio	3e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-04
smart00248	30	smart00248, ANK, ankyrin repeats	4e-04
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	4e-04
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	4e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	8e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.001
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.004
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  118 bits (297), Expect = 1e-31
 Identities = 50/121 (41%), Positives = 75/121 (61%)

Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           +   + G TPLH+A+  G+  V  +LL+  ADVN     G TPLH+A+  G + IV  LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYIS 326
           +  A+ +     G TPLHLAAR    D++++LL++GA V+AR ++G T L +A K G++ 
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 327 V 327
           V
Sbjct: 121 V 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  107 bits (268), Expect = 1e-27
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 26/143 (18%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            LH+AA     +  KLLLE                          N  + +     G TP
Sbjct: 10  PLHLAASNGHLEVVKLLLE--------------------------NGADVNAKDNDGRTP 43

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH+A+  G+  +  +LL+K ADVN   K G TPLH+A+  G +++V  LL++ A+ +   
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 277 VRGETPLHLAARANQTDIIRILL 299
             G TPLHLAA+    +++++LL
Sbjct: 104 KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 93.6 bits (233), Expect = 6e-23
 Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 30/147 (20%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           +G T    AA  GHL+ +   L+N  D+N  + +G   LHLA+K+GHL +V  LL +GA+
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD 65

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
           V++  K GNT LH+A+                          + G+  VV +LL++    
Sbjct: 66  VNARDKDGNTPLHLAA--------------------------RNGNLDVVKLLLKHGADV 99

Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLL 145
           + R KDG TPL +A + GH +VV +LL
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 90.4 bits (225), Expect = 4e-22
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH+A+  GN  +  +LL+K ADVN       T LH+A+  G + IV  LL++ A+ +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDAR 308
             G T LHLAAR    +I+++LL +GA ++ +
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 88.2 bits (219), Expect = 6e-21
 Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 34/152 (22%)

Query: 31  NTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGD 90
           N  + +G   LHLA+ +GHL VV  LL  GA+V++    G T LH+A+            
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAA------------ 48

Query: 91  FKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
                         + GH ++V +LLE     + R KDG TPL +A + G+  VV +LL+
Sbjct: 49  --------------KNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK 94

Query: 147 N----DTRGKVRLPALHIAAKKDDTKAAKLLL 174
           +    + R K     LH+AAK    +  KLLL
Sbjct: 95  HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 86.3 bits (214), Expect = 3e-20
 Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 14/117 (11%)

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGA 428
           ++G TPLHL A    + V +LLL+N A V+                  ++I   LLE GA
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
             NA    G TPLHL+A  G+ D+  +LL+HGADV+   K+G T L +A K G++ V
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEV 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 89.7 bits (223), Expect = 3e-19
 Identities = 73/282 (25%), Positives = 110/282 (39%), Gaps = 62/282 (21%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLH-----V 252
           Y+I  +   D + K    PL++A    N  V  ILLD  AD+N S K+  TPLH      
Sbjct: 20  YIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIK 79

Query: 253 ASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA--RANQTDIIRILLRNGAQVDARAR 310
            +      IV  LL+  AN + P   G TPL  A   ++N   I+  LL NGA V+ +  
Sbjct: 80  YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS 139

Query: 311 EGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKL---GY-ISVEESLK 366
           +G   L +  +   I                        L I + L   G  I+ +  + 
Sbjct: 140 DGENLLHLYLESNKID-----------------------LKILKLLIDKGVDINAKNRVN 176

Query: 367 GVTETLIIAKG---DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTL 423
                 +++ G   +  K   G TPLH                  A V      +    L
Sbjct: 177 -----YLLSYGVPIN-IKDVYGFTPLH-----------------YA-VYNNNP-EFVKYL 211

Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
           L+ GA PN  +  G TPLH++    + ++  +LL +G  +  
Sbjct: 212 LDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 82.2 bits (202), Expect = 1e-17
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 27/217 (12%)

Query: 123 KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDP 182
           K   + L +  +   D ++  LL               +    +    KL L +   + P
Sbjct: 2   KPSLSALLLINKCFLDLLLVALLLLL------------SLDLSNPSDKKLNLYLELALLP 49

Query: 183 ASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS 242
           A+ LS            +  + +       G  PLH A+  G++ +  +LL   ADVN  
Sbjct: 50  AASLSELLLK-------LIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAK 102

Query: 243 AKSGLTPLHVASF-----MGCMNIVIYLLQNDANPDIPTVR---GETPLHLAARANQTDI 294
              G TPLH+A+       G + +   LL+  A+ D+  +R   G TPLH AA     DI
Sbjct: 103 DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADI 162

Query: 295 IRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           + +LL  GA  ++R   G TAL  A K G I + + L
Sbjct: 163 VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 76.3 bits (188), Expect = 9e-17
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 61/186 (32%)

Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332
           +     G TPLHLAA     +++++LL NGA V+A+  +G T L +A K G++       
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLE------ 54

Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG-EKHKNGLTPLHL 391
                                              + + L+    D   + K+G TPLHL
Sbjct: 55  -----------------------------------IVKLLLEKGADVNARDKDGNTPLHL 79

Query: 392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
            A+   + V +LLLK+ A V+   K                    G TPLHL+A  GH +
Sbjct: 80  AARNGNLDVVKLLLKHGADVNARDKD-------------------GRTPLHLAAKNGHLE 120

Query: 452 MSAMLL 457
           +  +LL
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 28/117 (23%)

Query: 158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPL 217
           LH+AAK  + +  KLLLE                               DV      T L
Sbjct: 1   LHLAAKNGNLELVKLLLE----------------------------KGADVNLGDTDTAL 32

Query: 218 HIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           H+A+  GN  +  +LL+  ADVN   K G T LH+A+  G + IV  LL++ A+ ++
Sbjct: 33  HLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 77.7 bits (191), Expect = 2e-15
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 29/197 (14%)

Query: 124 DGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA----LHIAAKKDDTKAAKLLLEVSCT 179
           DG +P+ +AM+    + + +L+++     V+ P     LH A ++ D KA + LL++   
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 180 VDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV 239
            D                         DV  K G TPLH+A+      +  +L+ + AD 
Sbjct: 94  AD-------------------------DVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
           +       +PLH+A  MG +  +  L+ + A  DI    G TPL +A       I ++LL
Sbjct: 129 DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLL 188

Query: 300 RNGAQVDARAREGHTAL 316
            +GA +D   + G  A 
Sbjct: 189 DSGANIDYFGKNGCVAA 205

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 61/303 (20%), Positives = 91/303 (30%), Gaps = 112/303 (36%)

Query: 19  KIIEHL-KNNVDINTANANGLNALHLASKDGH-----LHVVTELLSRGANVDSATKKGNT 72
            +++ L  N  DIN++  N    LH  S   +       +V  LL  GANV++    G T
Sbjct: 49  DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT 108

Query: 73  ALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVA 132
            L  A   +                             +V  LL+    G +        
Sbjct: 109 PLLYAISKKS------------------------NSYSIVEYLLD---NGAN-------- 133

Query: 133 MQQGHDKVVAVLLENDTRGKVRLPALHIAAK--KDDTKAAKLLLE------VSCTVDPAS 184
                         N          LH+  +  K D K  KLL++          V+   
Sbjct: 134 -------------VNIKN-SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVN--- 176

Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
                        YL+      ++    GFTPLH A +  N      LLD  A+ N    
Sbjct: 177 -------------YLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN---- 219

Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
                                        +    G+TPLH+A   N  +I ++LL NG  
Sbjct: 220 -----------------------------LVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Query: 305 VDA 307
           +  
Sbjct: 251 IKT 253

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 250 LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
           LH+A+  G + +V  LL+  A+ ++     +T LHLAAR    +I+++LL +GA V+A+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG--DTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 310 REGHTALSIAQKLGYISV 327
           ++G+TAL +A + G + +
Sbjct: 59  KDGNTALHLAARNGNLEI 76

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 80/275 (29%), Positives = 115/275 (41%), Gaps = 34/275 (12%)

Query: 213 GFTPLHIASHYGNEGVANI---LLDKRADVNFSAKSGLTPLHV-ASFMGCMNIVIYLLQN 268
           G TPLH+  HY +E V +I   LL+  ADVN   + G TPLH+       ++++  L++ 
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA 106

Query: 269 DANPDIPTVRGETPLH--LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYIS 326
            A+ +     G TPLH  L+       +IR+LLR GA V+A    G T L++  K    +
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNAN 166

Query: 327 VE--ESLGAAERSQLKKRGREGHTAL-SIAQKLGYISVEESLKGVTETLIIAKGD-GEKH 382
           VE    L  A         R   + L    Q     S +     +   LI A  D     
Sbjct: 167 VELLRLLIDAGADVYAVDDR-FRSLLHHHLQ-----SFKPR-ARIVRELIRAGCDPAATD 219

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
             G TPLH  A          L+                 LL  G   NA +  G TPLH
Sbjct: 220 MLGNTPLHSMATGSS--CKRSLVLP---------------LLIAGISINARNRYGQTPLH 262

Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
            +A   +      L+  GAD++  + +G+T LS+ 
Sbjct: 263 YAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM 297

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 71.9 bits (176), Expect = 2e-13
 Identities = 73/302 (24%), Positives = 121/302 (40%), Gaps = 46/302 (15%)

Query: 90  DFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLL 145
           +F+  DG +P+ +AM+    + + +L+++    D +  D  + L  A+++G  K V  LL
Sbjct: 29  NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88

Query: 146 E-----NDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLI 200
           +     +D   K  +  LH+A         KL                          LI
Sbjct: 89  DLGKFADDVFYKDGMTPLHLATILKKLDIMKL--------------------------LI 122

Query: 201 KNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMN 260
               +PD+ +   F+PLH+A   G+     +L+D +A ++     G TPL +A   G + 
Sbjct: 123 ARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIA 182

Query: 261 IVIYLLQNDANPDIPTVRGE-TPLHLAARANQTDIIRILLRNGAQ---VDARAREGHTAL 316
           I   LL + AN D     G    L  A   N+ DI+R+ ++ GA    +     E  T L
Sbjct: 183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTIL 242

Query: 317 SIAQKLGYISVEESLGA--AE--RSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372
            +   +      E++ A  A+      KK  R           +  I  +E  K V E  
Sbjct: 243 DMICNMCTNLESEAIDALIADIAIRIHKKTIRRDE---GFKNNMSTIEDKEEFKDVFEKC 299

Query: 373 II 374
           II
Sbjct: 300 II 301

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 77/309 (24%), Positives = 130/309 (42%), Gaps = 61/309 (19%)

Query: 21  IEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG 80
           I+H +N     +A+      LH A +  +L VV  LL+RG NV+    +  T LHI    
Sbjct: 23  IDHTENYS--TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICK- 79

Query: 81  EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAV--AMQQGHD 138
                             P  + M++        ++ +  +    +T +A+  A    + 
Sbjct: 80  -----------------EPNKLGMKE--------MIRSINKCSVFYTLVAIKDAFNNRNV 114

Query: 139 KVVAVLLENDTRGKVRLPALHIAAK-KDD---TKAAKLLLEVSCTVDPASVLSSTTGNAA 194
           ++  ++L N  +    +  ++I  K KDD    +  KLLL     ++             
Sbjct: 115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADIN------------- 161

Query: 195 TGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVAS 254
                +K+ H        G T LH A+   ++ +  +LL   A+VN   K+  +PLH A 
Sbjct: 162 -----MKDRH-------KGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV 209

Query: 255 FMGCMNIVIYLLQNDANPDIPTVRGETPLHLA-ARANQTDIIRILLRNGAQVDARAR-EG 312
                 IV  LL+N A+ D     G TPLH++       DI+++LL +G  V+A++   G
Sbjct: 210 KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG 269

Query: 313 HTALSIAQK 321
            TAL  + K
Sbjct: 270 LTALHSSIK 278

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 71.2 bits (175), Expect = 4e-13
 Identities = 69/273 (25%), Positives = 100/273 (36%), Gaps = 68/273 (24%)

Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMN-----IVIYLLQNDANPDIPTVRGETPLHLA 286
           LL   ADVNF  + G TPLH+  ++   +     IV  LL+  A+ + P   G TPLHL 
Sbjct: 33  LLAAGADVNFRGEYGKTPLHL--YLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLY 90

Query: 287 ARANQT-DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
                T D+I++L++ GA V+A+ + G T L +                           
Sbjct: 91  LYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV--------------------------- 123

Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
                       Y+S       V   L+    D       G+TPL +  +     V  L 
Sbjct: 124 ------------YLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLR 171

Query: 405 LKNNAQVDTPTKMDIATTLLEY------------------GAKPNAESVAGFTPLHLSAS 446
           L  +A  D     D   +LL +                  G  P A  + G TPLH  A+
Sbjct: 172 LLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMAT 231

Query: 447 EGHADMSAM--LLEHGADVSHAAKEGHTALSIA 477
                 S +  LL  G  ++   + G T L  A
Sbjct: 232 GSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTK------------MDIATTLLEYGAKPNAESVA 436
           LHL A+   + + +LLL+  A V+                ++I   LLE+GA  NA+   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 437 GFTPLHLSASEGHADMSAMLLEHGADVS 464
           G T LHL+A  G+ ++  +LLEHGAD++
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 13/202 (6%)

Query: 129 LAVAMQ-QGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLS 187
           L  AMQ +  D VV  +L+N  +    L  L++     D             +    +  
Sbjct: 479 LIEAMQTRQEDNVV--ILKNFLQHHKELHDLNV----GDLLGDNGGEHDDPNMASNLLTV 532

Query: 188 STTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL 247
           ++TGNAA    L+K + +PD+    G TPLHIA+  G E    +LL    +V+    +G 
Sbjct: 533 ASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGN 592

Query: 248 TPLHVASFMGCMNI--VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
           T L  A       I  ++Y   + ++P          L  AA+ N    ++ LL+ G  V
Sbjct: 593 TALWNAISAKHHKIFRILYHFASISDPHA----AGDLLCTAAKRNDLTAMKELLKQGLNV 648

Query: 306 DARAREGHTALSIAQKLGYISV 327
           D+   +G TAL +A    ++ +
Sbjct: 649 DSEDHQGATALQVAMAEDHVDM 670

Length = 823

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 8  FLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSAT 67
             AA+ G+L+ +   L+   D+N  + +   ALHLA+++G+L +V  LL  GA+V++  
Sbjct: 1  LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 68 KKGNTALHIA 77
          K GNTALH+A
Sbjct: 59 KDGNTALHLA 68

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 31/258 (12%)

Query: 91  FKQGDGFTPLAVAMQQGHDK---VVAVLLEN----DTRGKDGFTPLAVAMQQGHD-KVVA 142
           F+   G TPL + +    +K   +V +LLE     +   + GFTPL + +       V+ 
Sbjct: 42  FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIK 101

Query: 143 VLLEN----DTRGKVRLPALHIAAKKD--DTKAAKLLLEV--------SCTVDPASVL-S 187
           +L++     + + KV    LH+       + K  +LLL             + P +VL  
Sbjct: 102 LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLK 161

Query: 188 STTGNAATGGYLIKNEHNPDVTSKS--GFTPLHIASHY--GNEGVANILLDKRADVNFSA 243
           S   N      LI      DV +      + LH           +   L+    D   + 
Sbjct: 162 SRNANVELLRLLID--AGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATD 219

Query: 244 KSGLTPLHV-ASFMGCMNIVIY-LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN 301
             G TPLH  A+   C   ++  LL    + +     G+TPLH AA  N     R L+  
Sbjct: 220 MLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIAL 279

Query: 302 GAQVDARAREGHTALSIA 319
           GA ++A + +G+T LS+ 
Sbjct: 280 GADINAVSSDGNTPLSLM 297

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 66/290 (22%), Positives = 103/290 (35%), Gaps = 61/290 (21%)

Query: 24  LKNNVDINTANANGLNALHL-ASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF 82
           L+   D+N     G   LHL       L V+  L+  GA+V++  K G T LH+   G  
Sbjct: 70  LEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFN 129

Query: 83  LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGH- 137
           + P                        KV+ +LL    D    D  G TPLAV ++  + 
Sbjct: 130 INP------------------------KVIRLLLRKGADVNALDLYGMTPLAVLLKSRNA 165

Query: 138 -DKVVAVLLE--NDTRGK--VRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGN 192
             +++ +L++   D           LH   +    +A  +   +    DPA+        
Sbjct: 166 NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA-------- 217

Query: 193 AATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI--LLDKRADVNFSAKSGLTPL 250
                           T   G TPLH  +   +   + +  LL     +N   + G TPL
Sbjct: 218 ----------------TDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPL 261

Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
           H A+          L+   A+ +  +  G TPL L  R N    +R  L 
Sbjct: 262 HYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 13/200 (6%)

Query: 127 TPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKKDDTKAAKLLLE--VSCT 179
           TPL  A++ G  K+V + ++     N    K+  P L  A K       KLL++  V  +
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLL-TAIKIGAHDIIKLLIDNGVDTS 95

Query: 180 VDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV 239
           + P   +            +  N  + ++      T LH A   G+     +L +  ADV
Sbjct: 96  ILPIPCIEKDMIKTILDCGIDVNIKDAELK-----TFLHYAIKKGDLESIKMLFEYGADV 150

Query: 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
           N    +G  P+H+A      +I+  LL+  A  ++    GE+PLH AA       I++L+
Sbjct: 151 NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLI 210

Query: 300 RNGAQVDARAREGHTALSIA 319
            +G  +  + + G T L  A
Sbjct: 211 DHGNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.4 bits (159), Expect = 2e-11
 Identities = 82/327 (25%), Positives = 127/327 (38%), Gaps = 71/327 (21%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           E  T  + A R+G   KI+E   K+  DIN  N    + L  A K G   ++  L+  G 
Sbjct: 34  ETTTPLIDAIRSGDA-KIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNG- 91

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR 121
            VD++       L I  + + ++   L                    D  + V    + +
Sbjct: 92  -VDTSI------LPIPCIEKDMIKTIL--------------------DCGIDV----NIK 120

Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLP------ALHIAAKKDDTKAAKLLLE 175
             +  T L  A+++G  + + +L E      V +        +HIA K +     KLLLE
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFE--YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE 178

Query: 176 VSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235
                               G Y    ++N       G +PLH A+ YG+     +L+D 
Sbjct: 179 -------------------KGAYANVKDNN-------GESPLHNAAEYGDYACIKLLIDH 212

Query: 236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN-QTDI 294
              +    K+G TPLH A         I LL N+A+ +   + G TPLH A       DI
Sbjct: 213 GNHIMNKCKNGFTPLHNAIIHN--RSAIELLINNASINDQDIDGSTPLHHAINPPCDIDI 270

Query: 295 IRILLRNGAQVDARAREGHTALSIAQK 321
           I ILL + A +  +  +G   +  A K
Sbjct: 271 IDILLYHKADISIKDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 28/114 (24%)

Query: 129 LAVAMQQGHDKVVAVLLEN--DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVL 186
           L +A + G+ ++V +LLE   D        ALH+AA+  + +  KLLLE           
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLE----------- 49

Query: 187 SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN 240
                          +  + +   K G T LH+A+  GN  +  +LL+  AD+N
Sbjct: 50  ---------------HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.0 bits (158), Expect = 4e-11
 Identities = 66/282 (23%), Positives = 106/282 (37%), Gaps = 66/282 (23%)

Query: 225 NEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLH 284
            + +   +LD   DVN       T LH A   G +  +  L +  A+ +I    G  P+H
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH 162

Query: 285 LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG-YISVEESLGAAERSQLKKRG 343
           +A + N  DII++LL  GA  + +   G + L  A + G Y  ++  +            
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLI------------ 210

Query: 344 REGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL 403
              H          +I                     K KNG TPLH     +R  +   
Sbjct: 211 --DHGN--------HIMN-------------------KCKNGFTPLHNAIIHNRSAIE-- 239

Query: 404 LLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSAS-EGHADMSAMLLEHGAD 462
           LL NNA +                   N + + G TPLH + +     D+  +LL H AD
Sbjct: 240 LLINNASI-------------------NDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD 280

Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE 504
           +S    +G   +  A K  YI+ +  +K +    ++ K   +
Sbjct: 281 ISIKDNKGENPIDTAFK--YINKDPVIKDIIANAVLIKEADK 320

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 32/112 (28%)

Query: 41  LHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPL 100
           LHLA+K+G+L +V  LL +GA+V+      +TALH+A+                      
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAA---------------------- 36

Query: 101 AVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEND 148
               + G+ ++V +LLE+    + + KDG T L +A + G+ ++V +LLE+ 
Sbjct: 37  ----RNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 64.2 bits (156), Expect = 5e-11
 Identities = 63/280 (22%), Positives = 98/280 (35%), Gaps = 81/280 (28%)

Query: 24  LKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL 83
           L   +D+N  +A     LH A K G L  +  L   GA+V+     G   +HIA    F 
Sbjct: 111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFF 170

Query: 84  VPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAV 143
                                      ++ +LLE                        A 
Sbjct: 171 --------------------------DIIKLLLEKG----------------------AY 182

Query: 144 LLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNE 203
               D  G+     LH AA+  D    K                           LI + 
Sbjct: 183 ANVKDNNGES---PLHNAAEYGDYACIK--------------------------LLIDHG 213

Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC-MNIV 262
           ++     K+GFTPLH A  + N     +L++  + +N     G TPLH A    C ++I+
Sbjct: 214 NHIMNKCKNGFTPLHNAIIH-NRSAIELLINNAS-INDQDIDGSTPLHHAINPPCDIDII 271

Query: 263 IYLLQNDANPDIPTVRGETPLHLAAR-ANQTDIIRILLRN 301
             LL + A+  I   +GE P+  A +  N+  +I+ ++ N
Sbjct: 272 DILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIAN 311

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 64.3 bits (156), Expect = 9e-11
 Identities = 87/333 (26%), Positives = 136/333 (40%), Gaps = 67/333 (20%)

Query: 207 DVTSKSGF--TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIV-- 262
           DV +K  +  TP+H A+  GN  + N+LL   ADVN  A   L+ L  A     ++ +  
Sbjct: 170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA 229

Query: 263 ------------IYLLQNDANPDIPT---------------VRGETPLHLAARA-NQTDI 294
                       + LL+   N D+ T                   TPLH A++A + + +
Sbjct: 230 IIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRL 289

Query: 295 IRILLRNGAQVDARAREGHTALSIAQKLGY----ISVEESLGAAERSQLKKRGREGHTAL 350
           +  LL  GA V+A+  +G T L +  K GY    I     LGA     +    R   T L
Sbjct: 290 VPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGA----DVNAADRLYITPL 345

Query: 351 SIAQKLGYISVEESLKGVTETLI-IAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNA 409
             A  L      +  K +  TL+ +      +     TP+H  A  + V +   LL   A
Sbjct: 346 HQASTL------DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA 399

Query: 410 QVDTPTKMDIAT----------------TLLEYGAKPNAESVAGFTPLHLSASEG-HADM 452
            ++  ++  I T                TL++ GA  N+++    TPLH +  +    D+
Sbjct: 400 DIEALSQ-KIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDV 458

Query: 453 SAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
             MLL++GADV+    +    L IA  L Y  +
Sbjct: 459 IEMLLDNGADVNAINIQNQYPLLIA--LEYHGI 489

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 55/237 (23%)

Query: 253 ASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREG 312
           A   G ++I   LL    NP+     G +P+ LA +   ++ I++L+++GA  D +    
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK---- 64

Query: 313 HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372
                      Y  +E  L               H A+           E  +K V E L
Sbjct: 65  -----------YPDIESEL---------------HDAV----------EEGDVKAVEELL 88

Query: 373 IIAK-GDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK------------MDI 419
            + K  D   +K+G+TPLHL     ++ + +LL+   A  D P               DI
Sbjct: 89  DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI 148

Query: 420 ATT--LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
                L+++ A  + E   G TPL ++ ++G   +  MLL+ GA++ +  K G  A 
Sbjct: 149 KGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAA 205

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 22/137 (16%)

Query: 372 LIIAKGDGEKHKNGL--TPLHLC---AQEDRVGVAELLLKNNAQVDTPTK---------- 416
            ++A G     +     TPLHL    + E    +  LLL+  A V+ P +          
Sbjct: 32  RLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYL 91

Query: 417 -----MDIATTLLEYGAKPNAESVAGFTPLH--LSASEGHADMSAMLLEHGADVSHAAKE 469
                +D+   L++ GA  NA+   G TPLH  LS    +  +  +LL  GADV+     
Sbjct: 92  YNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLY 151

Query: 470 GHTALSIAQKLGYISVE 486
           G T L++  K    +VE
Sbjct: 152 GMTPLAVLLKSRNANVE 168

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 30/252 (11%)

Query: 247 LTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
             PLH A     +++V  LL    N + P  R  TPLH+  +      ++ ++R+  +  
Sbjct: 38  FIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS 97

Query: 307 ARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLK 366
                 +T ++I       +VE       +  L  R +   T       +   S ++ ++
Sbjct: 98  V----FYTLVAIKDAFNNRNVE-----IFKIILTNRYKNIQT--IDLVYIDKKSKDDIIE 146

Query: 367 GVTETLIIAKGDGEKHKN---GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMD----- 418
                L+++ G     K+   G T LH   +     + ELLL   A V+ P K +     
Sbjct: 147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLH 206

Query: 419 ---------IATTLLEYGAKPNAESVAGFTPLHLSASE-GHADMSAMLLEHGADVS-HAA 467
                    I   LLE GA  +A    G TPLH+S       D+  +LLEHG DV+  + 
Sbjct: 207 HAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY 266

Query: 468 KEGHTALSIAQK 479
             G TAL  + K
Sbjct: 267 ILGLTALHSSIK 278

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 74/305 (24%), Positives = 114/305 (37%), Gaps = 40/305 (13%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
           Y+   E+     S   F PLH A    N  V   LL +  +VN      LTPLH+     
Sbjct: 22  YIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEP 81

Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV-----DARAREG 312
               +  ++++     +        +  A      +I +I+L N  +           + 
Sbjct: 82  NKLGMKEMIRSINKCSVFYT--LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKK 139

Query: 313 HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372
                I  ++    +  S GA       K   +G+TAL       Y +  +  + +TE L
Sbjct: 140 SKDDIIEAEI--TKLLLSYGADIN---MKDRHKGNTALH------YATENKDQR-LTELL 187

Query: 373 II--AKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TP--------T 415
           +   A  +     N  +PLH   +     +  +LL+N A  D       TP         
Sbjct: 188 LSYGANVNIPDKTNN-SPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK 246

Query: 416 KMDIATTLLEYGAKPNAES-VAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
             DI   LLE+G   NA+S + G T LH S          +LLE+GAD++       T L
Sbjct: 247 DYDILKLLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLLEYGADINSLNSYKLTPL 304

Query: 475 SIAQK 479
           S A K
Sbjct: 305 SSAVK 309

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 59.1 bits (142), Expect = 8e-10
 Identities = 44/132 (33%), Positives = 57/132 (43%), Gaps = 21/132 (15%)

Query: 380 EKHKNGLTPLHLCA-----QEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES 434
            K  +G TPLHL A      E  + VA+LLL+  A +D                  N   
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN----------------NLRD 144

Query: 435 VAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE 494
             G TPLH +A  G AD+  +LLE GAD +     G TAL  A K G I + + L     
Sbjct: 145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGL 204

Query: 495 TLIIAKGDGEKH 506
            L + K + E  
Sbjct: 205 HLSLLKFNLEGV 216

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 19/176 (10%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
            +        A   + +++ L  +  +   + +G   LH A+  G   +V  LL+ GA+V
Sbjct: 41  LYLELALLPAASLSELLLK-LIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV 99

Query: 64  DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGK 123
           ++    G+T LH+A+L         G+  +G+        + +   +  A L  N+ R +
Sbjct: 100 NAKDADGDTPLHLAALN--------GNPPEGNIE------VAKLLLEAGADLDVNNLRDE 145

Query: 124 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLE 175
           DG TPL  A   G   +V +LLE     ++R    + AL  AAK    +  KLLL+
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 54/255 (21%), Positives = 94/255 (36%), Gaps = 16/255 (6%)

Query: 189 TTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLT 248
             G       L+    NP+     G +P+ +A  + +     +L+   A  +       +
Sbjct: 11  LFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES 70

Query: 249 PLHVASFMGCMNIVIYLLQ-NDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
            LH A   G +  V  LL       D+    G TPLHLA    + DI+++L+  GA  D 
Sbjct: 71  ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI 130

Query: 308 RAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL-- 365
              +  + L +A  +G I   E L    ++ L      G T L IA   G I++ + L  
Sbjct: 131 PNTDKFSPLHLAVMMGDIKGIELL-IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD 189

Query: 366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK-MDIATTLL 424
            G         G        +  L    + +++ +  L +K  A  +          T+L
Sbjct: 190 SGANIDYFGKNGC-------VAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTIL 242

Query: 425 E----YGAKPNAESV 435
           +          +E++
Sbjct: 243 DMICNMCTNLESEAI 257

Length = 413

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 67/287 (23%), Positives = 105/287 (36%), Gaps = 67/287 (23%)

Query: 125 GFTPLAVAMQQG-HDKVVAVLLENDTRGKVRLPALHIAAK--KDDTKAAKLLLEVSCTVD 181
           G + L VA  +  + ++  +LL    RG V    LH  +    D  +A  L L       
Sbjct: 52  GRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLL---AAF 108

Query: 182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKS-GFTPLHIASHYGNEGVANILLDKRADVN 240
             S           G   + N+     +  + G T LH+A+H  N  +  +LL++ A V 
Sbjct: 109 RKS-----------GPLELAND--QYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP 155

Query: 241 FSAKSG--LTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
             A     +    V SF                       GE+PL+ AA      I+ +L
Sbjct: 156 ARACGDFFVKSQGVDSFY---------------------HGESPLNAAACLGSPSIVALL 194

Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358
             + A +        TA S+   L ++ V E+   AE           +  LS       
Sbjct: 195 SEDPADI-------LTADSLGNTLLHLLVMENEFKAE-----------YEELSCQMYNFA 236

Query: 359 ISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
           +S+ + L+   E  +I          GLTPL L A+E R+ +  L L
Sbjct: 237 LSLLDKLRDSKELEVILNHQ------GLTPLKLAAKEGRIVLFRLKL 277

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 72/282 (25%), Positives = 98/282 (34%), Gaps = 104/282 (36%)

Query: 18  DKIIEH------LKNNVDINTANANGLN-ALHLASKDGHLHVVTELLSRGANVDSATKKG 70
           D IIE       L    DIN  + +  N ALH A+++    +   LLS GANV+   K  
Sbjct: 142 DDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTN 201

Query: 71  NTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGF 126
           N+ LH                           A++  +  +V +LLEN    D R K G 
Sbjct: 202 NSPLH--------------------------HAVKHYNKPIVHILLENGASTDARDKCGN 235

Query: 127 TPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVL 186
           TPL +++  G+ K   +L                          KLLL            
Sbjct: 236 TPLHISV--GYCKDYDIL--------------------------KLLL------------ 255

Query: 187 SSTTGNAATGGYLIKNEHNPDVTSKS---GFTPLHIASHYGNEGVANILLDKRADVNFSA 243
                           EH  DV +KS   G T LH +    +E    +LL+  AD+N   
Sbjct: 256 ----------------EHGVDVNAKSYILGLTALHSSIK--SERKLKLLLEYGADINSLN 297

Query: 244 KSGLTPLHVA----SFMGCMNIVIY--LLQNDANPDIPTVRG 279
              LTPL  A      +    I+I    L     PDI    G
Sbjct: 298 SYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEG 339

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
           G T LH A+  G + +V YLL+   + +     G T LH+AA     +++++LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 21/54 (38%), Positives = 37/54 (68%)

Query: 11 AARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVD 64
          AAR G+L+ +   L++  D+N  + +G  ALHLA+++G+L +V  LL  GA+++
Sbjct: 35 AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 85/331 (25%), Positives = 136/331 (41%), Gaps = 33/331 (9%)

Query: 24  LKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL 83
           L+   D+N  +   +  +H A++ G+  +V  LLS GA+V+       + L  A   + +
Sbjct: 165 LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNI 224

Query: 84  VPV-WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGF----------TPLAVA 132
             +  + D +       L++     ++ +   LL  D     GF          TPL  A
Sbjct: 225 DTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDA----GFSVNSIDDCKNTPLHHA 280

Query: 133 MQQGH-DKVVAVLLE-----NDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVL 186
            Q     ++V  LLE     N    K   P   +A    DT+  + L+ +   V+ A  L
Sbjct: 281 SQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRL 340

Query: 187 SSTTGNAATGGYLIKN------EHNPDVTSKSGF--TPLHIASHYGNEGVANILLDKRAD 238
             T  + A+     K+      E   +V ++     TP+H A+   N  + N LLD  AD
Sbjct: 341 YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400

Query: 239 VNFSAKSGLTPLHVASF-MGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN-QTDIIR 296
           +   ++   T LH A         V  L+   AN +       TPLH A + N + D+I 
Sbjct: 401 IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIE 460

Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISV 327
           +LL NGA V+A   +    L IA  L Y  +
Sbjct: 461 MLLDNGADVNAINIQNQYPLLIA--LEYHGI 489

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 265 LLQND-ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           LL++   + +     G TPLHLAA+    ++++ LL+ G  ++ R  +G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.9 bits (126), Expect = 9e-08
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 3   EGHTSFLRAARAGHL--------DKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVT 54
           +G T    AA  G+           ++E   +    N  + +G   LH A+ +G   +V 
Sbjct: 105 DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVE 164

Query: 55  ELLSRGANVDSATKKGNTALHIASL 79
            LL  GA+ +S    G TAL  A+ 
Sbjct: 165 LLLEAGADPNSRNSYGVTALDPAAK 189

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           NA    G TPLHL+AS GH ++  +LLE+GADV+    +G T L +A K G++ + + L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 28/72 (38%), Positives = 40/72 (55%)

Query: 420 ATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
           A  LL  GA PN     G TPLH++ + GH  +  +LLE GAD +   K+G T L +A++
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 480 LGYISVEESLKG 491
            G+  V + L  
Sbjct: 158 NGFREVVQLLSR 169

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 30/217 (13%)

Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY 324
           LL+  A+ +   +   TP+H AA      ++ +LL  GA V+  A +  + L  A     
Sbjct: 164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKN 223

Query: 325 ISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN 384
           I   +++    RS + K        LS+ + +    +E SL        +   D  K+  
Sbjct: 224 IDTIKAI-IDNRSNINKND------LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKN-- 274

Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
             TPLH  +Q                   P+   +   LLE GA  NA+++ G TPL+L 
Sbjct: 275 --TPLHHASQ------------------APSLSRLVPKLLERGADVNAKNIKGETPLYLM 314

Query: 445 ASEGH-ADMSAMLLEHGADVSHAAKEGHTALSIAQKL 480
           A  G+  +    L+  GADV+ A +   T L  A  L
Sbjct: 315 AKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL 351

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 27/72 (37%), Positives = 39/72 (54%)

Query: 229 ANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAAR 288
           A ILL   AD N     G TPLH+A   G + +V  LL+  A+P +    G+TPL LA  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 289 ANQTDIIRILLR 300
               +++++L R
Sbjct: 158 NGFREVVQLLSR 169

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           G T LH A+  G   +   LL+K  D+N + + G T LH+A+  G + ++  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 55/243 (22%), Positives = 85/243 (34%), Gaps = 51/243 (20%)

Query: 34  NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQ 93
           +   L+AL L +K     ++  LL   +   S        L++                 
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELAL------------- 47

Query: 94  GDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DT 149
                 L  A        + V      R  DG  PL  A  +G DK+V +LL +    + 
Sbjct: 48  ------LPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA 101

Query: 150 RGKVRLPALHIAAKKDDTK-----AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEH 204
           +       LH+AA   +        AKLLLE    +D                       
Sbjct: 102 KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD----------------------- 138

Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
             ++  + G TPLH A+  G+  +  +LL+  AD N     G+T L  A+  G + +V  
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKL 198

Query: 265 LLQ 267
           LL 
Sbjct: 199 LLD 201

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 45/160 (28%), Positives = 65/160 (40%), Gaps = 33/160 (20%)

Query: 9   LRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATK 68
           L  A  G+   + E LK  +D +  ++ G   LH+A+  G+   V  LL    NV     
Sbjct: 530 LTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA 589

Query: 69  KGNTAL----------------HIASLGEFLVPVWLGDF-----KQGDGFTPLAVAMQQG 107
            GNTAL                H AS+ +   P   GD      K+ D  T +   ++QG
Sbjct: 590 NGNTALWNAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRND-LTAMKELLKQG 645

Query: 108 HDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
                   L  D+    G T L VAM + H  +V +L+ N
Sbjct: 646 --------LNVDSEDHQGATALQVAMAEDHVDMVRLLIMN 677

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 232 LLDKR-ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
           LL+    D+N +  +G TPLH+A+  G + +V +LL+   + ++    G T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 423 LLEYG-AKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
           LLE+G    NA    G TPLHL+A  G  ++   LL+ G D++    +G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 54/181 (29%), Positives = 77/181 (42%), Gaps = 18/181 (9%)

Query: 250 LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
           L VAS  G   ++  LL+   +PDI   +G TPLH+AA     D + +LL++   V  R 
Sbjct: 530 LTVAS-TGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD 588

Query: 310 REGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTA---LSIAQKLGYISVEESLK 366
             G+TAL  A    +  +   L             + H A   L  A K   ++  + L 
Sbjct: 589 ANGNTALWNAISAKHHKIFRILYHFASIS------DPHAAGDLLCTAAKRNDLTAMKEL- 641

Query: 367 GVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDI--ATTLL 424
            + + L +   D E H  G T L +   ED V +  LL+ N A VD     D    T L 
Sbjct: 642 -LKQGLNV---DSEDH-QGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELR 696

Query: 425 E 425
           E
Sbjct: 697 E 697

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDAR 308
           G TPLHLAAR    +++++LL  GA V+AR
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 199 LIKNEH-NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
           L+++   + + T  +G TPLH+A+ YG   +   LL    D+N     GLT L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 30/230 (13%)

Query: 282 PLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKK 341
           PLH A  A   D+++ LL  G  V+       T L I            LG  E  +   
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII-----CKEPNKLGMKEMIRSIN 94

Query: 342 RGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRV--G 399
           +    +T ++I       +VE     + + ++  +    +  + L  +   +++D +   
Sbjct: 95  KCSVFYTLVAIKDAFNNRNVE-----IFKIILTNRYKNIQTID-LVYIDKKSKDDIIEAE 148

Query: 400 VAELLLKNNAQVDTPTK---------------MDIATTLLEYGAKPNAESVAGFTPLHLS 444
           + +LLL   A ++   +                 +   LL YGA  N       +PLH +
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208

Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE 494
               +  +  +LLE+GA      K G+T L I+  +GY    + LK + E
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHIS--VGYCKDYDILKLLLE 256

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 37 GLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL 83
          G  ALH A+  G L +V  LL +G +++   + GNTALHIA+    L
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNL 47

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 23 HLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIA 77
               +D+N  + NG   LHLA+K G L +V  LL  G +++     G TAL +A
Sbjct: 2  LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 81/319 (25%), Positives = 131/319 (41%), Gaps = 53/319 (16%)

Query: 11  AARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKG 70
           A  + ++D I   + N  +IN  + + L A+    ++  L     L   G +V+S     
Sbjct: 218 AVDSKNIDTIKAIIDNRSNINKNDLSLLKAI----RNEDLETSLLLYDAGFSVNSIDDCK 273

Query: 71  NTALHIASLG---EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKV---VAVLLEND 119
           NT LH AS       LVP  L      + K   G TPL +  + G+D       ++L  D
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD 333

Query: 120 TRGKDGF--TPL--AVAMQQGHDKVVAVL---LENDTRGKVRLPALHIAAKKDDTKAAKL 172
               D    TPL  A  + +  D V+ +L      + R       +H AA +++      
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT 393

Query: 173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA-NI 231
           LL+    ++    LS   G                       T LH A    N  ++   
Sbjct: 394 LLDYGADIE---ALSQKIG-----------------------TALHFALCGTNPYMSVKT 427

Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGC-MNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           L+D+ A+VN   K   TPLH A    C ++++  LL N A+ +   ++ + PL +A   +
Sbjct: 428 LIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH 487

Query: 291 QTDIIRILLRNGAQV-DAR 308
              I+ ILL  GA++ D+R
Sbjct: 488 --GIVNILLHYGAELRDSR 504

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 112 VAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAK 171
            A  L   T G        ++ ++     +A + E   R    L AL     KD T    
Sbjct: 13  FAAQLFFGTEGSRKRRAKPISFER-----MAAIQEEIARIDTHLEALEATENKDATPDHN 67

Query: 172 LLLEVSCTVDP--ASVLS------STTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHY 223
           L  E    +DP  A +L+      + +G+A     L+    +P+     G TPLHIA   
Sbjct: 68  LTTEEV--IDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN 125

Query: 224 GNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           G+  V  +LL+  AD     K G TPL +A   G   +V  L 
Sbjct: 126 GHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 8e-06
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 404 LLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV 463
           L+K   Q D   ++ IA  LLE GA  NA+ +   TP+H +A  G+A M  +LL +GADV
Sbjct: 148 LIKERIQQD---ELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV 204

Query: 464 SHAAKEGHTALSIA 477
           +  A +  + L  A
Sbjct: 205 NIIALDDLSVLECA 218

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 46/132 (34%)

Query: 283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKR 342
           LHLAA+    +++++LL  GA V+       TAL +A + G + +               
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEI--------------- 43

Query: 343 GREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG--EKHKNGLTPLHLCAQEDRVGV 400
                             V+         L++  G     K K+G T LHL A+   + +
Sbjct: 44  ------------------VK---------LLLEHGADVNAKDKDGNTALHLAARNGNLEI 76

Query: 401 AELLLKNNAQVD 412
            +LLL++ A ++
Sbjct: 77  VKLLLEHGADIN 88

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 26/132 (19%)

Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTK-------------------MDIATTLLEYG 427
            PL+L  +   + V ++LL N A +++ TK                    +I   LLEYG
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG 96

Query: 428 AKPNAESVAGFTPLHLSASE--GHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           A  NA    G TPL  + S+      +   LL++GA+V+    +G   L +  +   I +
Sbjct: 97  ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDL 156

Query: 486 EESLKGVTETLI 497
           +     + + LI
Sbjct: 157 K-----ILKLLI 163

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 38/253 (15%)

Query: 226 EGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHL 285
           E +  I+ +K   +N S     TPL  A   G   IV   +++ A+ +    +   PL  
Sbjct: 15  EAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLT 74

Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
           A +    DII++L+ NG  VD       T++     +    ++  L       +  +  E
Sbjct: 75  AIKIGAHDIIKLLIDNG--VD-------TSILPIPCIEKDMIKTILDCG--IDVNIKDAE 123

Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE-KHKNGLTPLHLCAQEDRVGVAELL 404
             T L  A K G +   ES+K     L     D   +  NG  P+H+             
Sbjct: 124 LKTFLHYAIKKGDL---ESIK----MLFEYGADVNIEDDNGCYPIHIA------------ 164

Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
           +K+N         DI   LLE GA  N +   G +PLH +A  G      +L++HG  + 
Sbjct: 165 IKHNF-------FDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM 217

Query: 465 HAAKEGHTALSIA 477
           +  K G T L  A
Sbjct: 218 NKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 36 NGLNALHLASKDGHLHVVTELLSRGANVDSATK 68
          +G   LHLA+++GHL VV  LL  GA+V++  K
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 213 GFTPLHIASHYGNEGVANILLDKRADVN 240
           G TPLH+A+  G+  V  +LL+  ADVN
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 437 GFTPLHLSASEGHADMSAMLLEHGADVSH 465
           G TPLHL+A  GH ++  +LLE GADV+ 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 64/281 (22%), Positives = 101/281 (35%), Gaps = 61/281 (21%)

Query: 42  HLASKDGHLHVVTELLSRGANVD--------------SATKKGNTALHIASLGEFLVPVW 87
           +L        +V   ++ GANV+              S  K     L I  +   +    
Sbjct: 43  YLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKI--LIENGA 100

Query: 88  LGDFKQGDGFTPLAVAMQQGH---DKVVAVLLENDTR----GKDGFTPLAVAMQQGHD-- 138
             + K  DG TPL   +  G+    +++  ++EN        KDGFT L V +Q  H   
Sbjct: 101 DINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHID 160

Query: 139 -KVVAVLLE-----NDTRGKVRLPALHIAAKKD----DTKAAKLLLEVSCTVDPASVLSS 188
            +++ +LLE     N    K +   LH   K +    D    KL ++             
Sbjct: 161 IEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD------------- 207

Query: 189 TTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD---KRADVNFSAKS 245
                   G++I  E+    + K  F     +  Y N+     +LD      D+N   + 
Sbjct: 208 -------NGFIINKENK---SHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDEL 257

Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
           G  PL+ +       I  YLLQ   + +I T  G T L  A
Sbjct: 258 GFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298

Length = 489

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 60/242 (24%), Positives = 92/242 (38%), Gaps = 54/242 (22%)

Query: 96  GFTPLAVAMQQG-HDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVR 154
           G + L VA  +  + ++  +LL    RG  G T L     +  D V A+LL      +  
Sbjct: 52  GRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKS 111

Query: 155 LP-----------------ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGG 197
            P                 ALH+AA + + +  KLLLE   +V PA          A G 
Sbjct: 112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PA---------RACGD 161

Query: 198 YLIKNEHNPDVTSKS-GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLH----V 252
           + +K   +  V S   G +PL+ A+  G+  +  +L +  AD+  +   G T LH     
Sbjct: 162 FFVK---SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVME 218

Query: 253 ASF--------MGCMNIVIYLLQNDANPD-------IPTVRGETPLHLAARANQTDIIRI 297
             F            N   + L              I   +G TPL LAA+  +  + R+
Sbjct: 219 NEFKAEYEELSCQMYN---FALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRL 275

Query: 298 LL 299
            L
Sbjct: 276 KL 277

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           G TPLH+A+  G + +V  LL+  A+ +   
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 235 KRADVNFSAKSGLTPLHVA-----SFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA 289
           +R +      SG+TPLHV+     +    M+  +YLL    N +IPT  G TPL L  R 
Sbjct: 486 ERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRN 545

Query: 290 N-----QTDIIRILLRNGAQVD 306
           N     Q  I++ +L     VD
Sbjct: 546 NRLSGHQWYIVKNILDKRPNVD 567

Length = 764

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 21/55 (38%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 4  GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELL 57
          G T+  +AA +G L+ ++++L +  VDIN  + +G  ALH+A+++G+L V+  LL
Sbjct: 1  GRTALHKAAISGRLE-LVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 13/149 (8%)

Query: 11  AARAGHLDKIIEHLKNNVDINTA-NANGLNALHLASKDGHLHVVTELLSRGANVDSATKK 69
           A   G +  + E L      +     +G+  LHLA+    L ++  L++RGA+ D     
Sbjct: 75  AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD 134

Query: 70  GNTALHIASLGEFLVPVWL-------GDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
             + LH+A +   +  + L        D +   G TPL +AM +G   +  +LL++    
Sbjct: 135 KFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Query: 119 DTRGKDG-FTPLAVAMQQGHDKVVAVLLE 146
           D  GK+G    L  A++     +V + ++
Sbjct: 195 DYFGKNGCVAALCYAIENNKIDIVRLFIK 223

Length = 413

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDA 307
           G TPLHLAAR    +++++LL +GA ++A
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 12/87 (13%)

Query: 400 VAELLLKNNAQVDTPTK----MDIATT--------LLEYGAKPNAESVAGFTPLHLSASE 447
           V +LL  N  + D P      + +A+T        LL+    P+     G TPLH++AS+
Sbjct: 509 VGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK 568

Query: 448 GHADMSAMLLEHGADVSHAAKEGHTAL 474
           G+ D   +LL+H  +V      G+TAL
Sbjct: 569 GYEDCVLVLLKHACNVHIRDANGNTAL 595

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 2  GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLA 44
          G G+T    AA+ G L+ +   LK  VD+N  +++GL AL LA
Sbjct: 14 GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY 324
           LL   A+P+     G TPLH+A       ++R+LL  GA      ++G T L +A++ G+
Sbjct: 101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160

Query: 325 ISVEESL 331
             V + L
Sbjct: 161 REVVQLL 167

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK 416
           +G TPLHL A+   + V +LLL+  A V+   K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 64/297 (21%), Positives = 113/297 (38%), Gaps = 83/297 (27%)

Query: 228 VANILLDKRADVNFSAKSGL--TPLHVASFMG--------CMNIVIYLLQNDANPDIPTV 277
           +  +L+D  ADVN+    G   TPL   + +            IV  LL+  A+ ++ T 
Sbjct: 52  IVKLLIDNGADVNYK---GYIETPL--CAVLRNREITSNKIKKIVKLLLKFGADINLKTF 106

Query: 278 RGETPLH---LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
            G +P+      +  N  D++R LL  G  V+                    V+ S    
Sbjct: 107 NGVSPIVCFIYNSNINNCDMLRFLLSKGINVN-------------------DVKNS---- 143

Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN--GLTPLHLC 392
                      G+  L +     Y+      K V + L+    +  +  +  GLTP+++ 
Sbjct: 144 ----------RGYNLLHM-----YLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIY 188

Query: 393 AQED----RVGVAELLLKNNAQVDTPT--------------------KMDIATTLLEYGA 428
            + D     + V + L+K    ++T                      +  +   +L+Y  
Sbjct: 189 LRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKY-I 247

Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           K N +   GF PL +SA   + +    LL+ G D+ + +K+G T L+ A K G I +
Sbjct: 248 KINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDM 304

Length = 494

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 213 GFTPLHIASHYGNEGVANILLDKRADVN 240
           G TPLH+A+  GN  V  +LLDK AD+N
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 411 VDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEG 470
           VD PT ++I    + Y    N     G T L+ +   G+ D+ + LLE+GA+V+     G
Sbjct: 195 VDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNG 254

Query: 471 HTALSIAQKLGYI 483
           +T L +A   G +
Sbjct: 255 YTCLDVAVDRGSV 267

Length = 437

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 11  AARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSA 66
           AA+   L  + E LK  +++++ +  G  AL +A  + H+ +V  L+  GA+VD A
Sbjct: 629 AAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKA 684

Length = 823

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDA 307
            G TPLHLAA     +++++LL  GA ++A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 215 TPLHIASHYGNEGVANILLDKRADVN-FSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
            PL  A    N+  A +L+   ADVN ++ ++ +TPL+++   GC+  +  LL   A+ +
Sbjct: 72  NPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADIN 131

Query: 274 IPTVRGETPLHLAAR 288
           I T    TP+ LA  
Sbjct: 132 IQTNDMVTPIELALM 146

Length = 300

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           RGET LH A R N+  ++ +LL +G+ V+ R+  G+T ++IA
Sbjct: 451 RGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIA 492

Length = 661

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 63/297 (21%), Positives = 105/297 (35%), Gaps = 66/297 (22%)

Query: 19  KIIEHLKNNVDINTANANGLNA---------LHLASKDGH-LHVVTELLSRGANVDSATK 68
            I++   N      AN NGL+          L       H L +V  L+  GA+++    
Sbjct: 52  DIVKLFINL----GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNS 107

Query: 69  KGNTAL-------HIASLGEFL-------VPVWLGDFKQGDGFTPLAVAMQQGHD---KV 111
            G T L       +I +L E L           L D    DGFT L V +Q  H    ++
Sbjct: 108 DGETPLYCLLSNGYINNL-EILLFMIENGADTTLLD---KDGFTMLQVYLQSNHHIDIEI 163

Query: 112 VAVLLE-----NDTRGKDGFTPLAVAMQQGHDK----VVAVLLENDTRGKVRLPALHIAA 162
           + +LLE     N    K+ +  L    +   D+    ++ + ++N               
Sbjct: 164 IKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG-----------FII 212

Query: 163 KKDDTKAAKLLLE--VSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIA 220
            K++    K  +E   S   D      +      +  Y+  N+ +     + GF PL+ +
Sbjct: 213 NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--YIDINQVD-----ELGFNPLYYS 265

Query: 221 SHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV 277
             + N  +   LL    D+N   + G T L  A       I   +L     P+  T+
Sbjct: 266 VSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKK--PNKNTI 320

Length = 489

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 13  RAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNT 72
           +   +  ++      + IN  N  G   LH A+   +      L++ GA++++ +  GNT
Sbjct: 236 KRSLVLPLLI---AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNT 292

Query: 73  AL 74
            L
Sbjct: 293 PL 294

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 26/80 (32%)

Query: 154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSG 213
              ALH AA     +  K LLE                             + + T + G
Sbjct: 1   GRTALHKAAISGRLELVKYLLE--------------------------KGVDINRTDEDG 34

Query: 214 FTPLHIASHYGNEGVANILL 233
            T LHIA+  GN  V  +LL
Sbjct: 35  NTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 24  LKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIA 77
           L    D N  + +G   LH+A  +GH+ VV  LL  GA+     K G T L +A
Sbjct: 102 LTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Length = 664

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 58/288 (20%), Positives = 106/288 (36%), Gaps = 33/288 (11%)

Query: 205 NPDVTSKSGFTPLHIASHYGNEG--VANILLDKRADVNFSAKSGLTPL-----HVASFMG 257
           NP+      ++         +    +  + ++  A+VN       TPL     ++  +  
Sbjct: 29  NPNEIVNE-YSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKH 87

Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLA---ARANQTDIIRILLRNGAQVDARAREGHT 314
            ++IV  L++N A+ +     GETPL+        N  +I+  ++ NGA      ++G T
Sbjct: 88  MLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFT 147

Query: 315 ALSIAQKLGY---ISVEESLGAAERSQLKKRGREGHTALSIAQKLGY--ISVEESLKGVT 369
            L +  +  +   I + + L            +E +  L    K     I  +     V 
Sbjct: 148 MLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD 207

Query: 370 ETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAK 429
              II K +    K  +  L+             LL +N +       +I   +  Y   
Sbjct: 208 NGFIINKENKSHKKKFMEYLN------------SLLYDNKRFKK----NILDFIFSY-ID 250

Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
            N     GF PL+ S S  +  +   LL+ G D++   + G+T L  A
Sbjct: 251 INQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298

Length = 489

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 213 GFTPLHIASHYGNEGVANILLDKRADVN 240
           G TPLH+A+  GN  +  +LL+  AD+N
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 437 GFTPLHLSASEGHADMSAMLLEHGADV 463
           G TPLHL+A  G+ ++  +LL+ GAD+
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/29 (44%), Positives = 22/29 (75%)

Query: 36 NGLNALHLASKDGHLHVVTELLSRGANVD 64
          +G   LHLA+++G+L VV  LL +GA+++
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           T LH AA + + ++++ LL  G  ++    +G+TAL IA
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 42/163 (25%), Positives = 58/163 (35%), Gaps = 31/163 (19%)

Query: 339 LKKRGREGHTALSIAQKLGYISVEESL--------KGVTETLIIAKGDGEKHKNGLTPLH 390
           L  RG  G T L         +VE  L        K     L   +   E    G+T LH
Sbjct: 75  LSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTP-GITALH 133

Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDI-----ATTLLEYGAKPNAESVAGFTPLHLSA 445
           L A      + +LLL+  A V      D            +G     ES     PL+ +A
Sbjct: 134 LAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHG-----ES-----PLNAAA 183

Query: 446 SEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488
             G   + A+L E  AD+        TA S+   L ++ V E+
Sbjct: 184 CLGSPSIVALLSEDPADIL-------TADSLGNTLLHLLVMEN 219

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 24/143 (16%)

Query: 358 YISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQED--RVGVAELLLKNNAQVD--- 412
           YI+  +++K  T  L+I   +  +  N  +      Q D     + +L +   A V+   
Sbjct: 9   YITFSDNVKLSTVKLLIKSCNPNEIVNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLD 68

Query: 413 ----TP------------TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
               TP              +DI   L+E GA  N ++  G TPL+   S G+ +   +L
Sbjct: 69  NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEIL 128

Query: 457 L---EHGADVSHAAKEGHTALSI 476
           L   E+GAD +   K+G T L +
Sbjct: 129 LFMIENGADTTLLDKDGFTMLQV 151

Length = 489

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	529
KOG4177|consensus	1143		100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG4177|consensus	1143		100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0510|consensus	929		100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0508|consensus	615		100.0
KOG4412|consensus	226		100.0
KOG0509|consensus	600		99.98
KOG0509|consensus	600		99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4369|consensus	2131		99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0507|consensus	854		99.93
KOG0502|consensus	296		99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0502|consensus	296		99.92
KOG4369|consensus	2131		99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0505|consensus	527		99.9
KOG0507|consensus	854		99.9
KOG0505|consensus	527		99.89
KOG0514|consensus	452		99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.85
KOG0514|consensus	452		99.85
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.81
KOG0512|consensus	228		99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.8
KOG0512|consensus	228		99.75
PHA02736	154	Viral ankyrin protein; Provisional	99.74
KOG3676|consensus	782		99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
KOG3676|consensus	782		99.68
KOG0195|consensus	448		99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
KOG4214|consensus	117		99.64
KOG0195|consensus	448		99.58
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
KOG4214|consensus	117		99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
KOG1710|consensus	396		99.44
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.4
KOG0515|consensus	752		99.37
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.36
KOG1710|consensus	396		99.34
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.32
KOG0515|consensus	752		99.29
PF13606	30	Ank_3: Ankyrin repeat	99.0
PF13606	30	Ank_3: Ankyrin repeat	98.96
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.85
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.81
KOG0506|consensus	622		98.8
KOG0818|consensus	669		98.77
KOG0506|consensus	622		98.73
KOG0511|consensus	516		98.69
KOG0818|consensus	669		98.64
KOG2384|consensus	223		98.64
KOG0783|consensus	1267		98.64
KOG0783|consensus	1267		98.61
KOG0782|consensus	1004		98.56
KOG0782|consensus	1004		98.55
KOG0705|consensus	749		98.4
KOG3609|consensus	822		98.36
KOG0511|consensus	516		98.3
KOG0705|consensus	749		98.29
KOG0522|consensus	560		98.29
KOG0521|consensus	785		98.21
KOG0522|consensus	560		98.21
KOG3609|consensus	822		98.2
KOG2384|consensus	223		97.99
KOG0521|consensus	785		97.84
KOG0520|consensus	975		97.46
KOG2505|consensus	591		97.41
KOG0520|consensus	975		97.32
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.29
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.2
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.1
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.04
KOG2505|consensus	591		96.98
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.8
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.47
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.24
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.42
PLN03218	1060	maturation of RBCL 1; Provisional	88.95
PLN03218	1060	maturation of RBCL 1; Provisional	87.89

>KOG4177|consensus

Probab=100.00  E-value=2.9e-55  Score=436.26  Aligned_cols=515  Identities=34%  Similarity=0.507  Sum_probs=435.4

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      .+|.||||.|++.|+.++++.|+..|+.++..+..|.||||.|+..|+.+++++|+..|+++++.++.|.||++++....
T Consensus        85 ~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~a~~~~k~~~g~t~l~~a~~~~  164 (1143)
T KOG4177|consen   85 RNGITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAARKGHVQVIELLLQHGAPINIKTKNGLSPLHMAAQVA  164 (1143)
T ss_pred             ccCccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhcccccHHHHHHHHHccCCCcccccCCCCchhhhcchh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999987511


Q ss_pred             cccc-------ccc-----------------------cccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCc
Q psy2356          82 FLVP-------VWL-----------------------GDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFT  127 (529)
Q Consensus        82 ~~~~-------~~~-----------------------~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~  127 (529)
                      ....       .++                       ....+..+.||++.|+..+.+++++.++.+|.+    +..+.+
T Consensus       165 ~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~  244 (1143)
T KOG4177|consen  165 CARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPNASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDESGLT  244 (1143)
T ss_pred             hhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCccccccCCCCchhhhccccccceeeeeeeccCcCCcccccCcc
Confidence            1100       000                       123455688999999999999999999999877    888999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCC----CCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCc-------ccccccCCchhh
Q psy2356         128 PLAVAMQQGHDKVVAVLLENDTR----GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPAS-------VLSSTTGNAATG  196 (529)
Q Consensus       128 ~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-------~~~~~~~~~~~~  196 (529)
                      |+|.|+..|+.+++.+++.++..    +..+.||+|.|+..+..++++++++.|+.+....       -.....+...++
T Consensus       245 ~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~  324 (1143)
T KOG4177|consen  245 PLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIV  324 (1143)
T ss_pred             HHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHH
Confidence            99999999999999999998765    4456799999999999999999999988766443       244555788899


Q ss_pred             HHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy2356         197 GYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT  276 (529)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~  276 (529)
                      .+.++.+..++..+..+.+++|+++..++.++..++...+..-...+..+.+|++.|+..|+.+.++.++..|.+++...
T Consensus       325 ~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~g  404 (1143)
T KOG4177|consen  325 HLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAG  404 (1143)
T ss_pred             HHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCC
Confidence            99999999999999999999999999999998888888888888888889999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcC-ChhHHHHhhhhcccccccCCCCCCcHHHHHHH
Q psy2356         277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG-YISVEESLGAAERSQLKKRGREGHTALSIAQK  355 (529)
Q Consensus       277 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~  355 (529)
                      ..|.||||.++.+++..+++.++++|++.+..+..|.|++|+|+..| +.++... +...+.+++.....|.||||.|+.
T Consensus       405 k~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~-l~~~g~~~n~~s~~G~T~Lhlaaq  483 (1143)
T KOG4177|consen  405 KNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARL-LLQYGADPNAVSKQGFTPLHLAAQ  483 (1143)
T ss_pred             CCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhh-HhhcCCCcchhccccCcchhhhhc
Confidence            99999999999999999999999999999999999999999999999 4444444 456677888899999999999999


Q ss_pred             hCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC--------------chhHHHH
Q psy2356         356 LGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP--------------TKMDIAT  421 (529)
Q Consensus       356 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~--------------~~~~~~~  421 (529)
                      .|+.++++.+++..      ...+.....+.+++|.|...+...+++.++++|++.+..              .+..+++
T Consensus       484 ~Gh~~~~~llle~~------~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~Vk  557 (1143)
T KOG4177|consen  484 EGHTEVVQLLLEGG------ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVK  557 (1143)
T ss_pred             cCCchHHHHhhhcC------CccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHH
Confidence            99999998884432      112344455666666666666666666666666665522              3456666


Q ss_pred             HHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhccC
Q psy2356         422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKG  501 (529)
Q Consensus       422 ~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~  501 (529)
                      +|+++|+|++.++..|+||||.|+..|+.+++.+|+++|++++..|.+|.|||++|++.|+.++++.|+..+........
T Consensus       558 fLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~  637 (1143)
T KOG4177|consen  558 FLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDP  637 (1143)
T ss_pred             HhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccc
Confidence            66677888899999999999999999999999999999999999999999999999999999999999999998644445


Q ss_pred             CCCccccchhhhhhhcccccCc
Q psy2356         502 DGEKHKVVAPEIMQETFMSDSE  523 (529)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~  523 (529)
                      ..+..+...|+.+.+.+..+..
T Consensus       638 ~~e~~~g~~p~~v~e~~~~~~~  659 (1143)
T KOG4177|consen  638 VKENRKGAVPEDVAEELDTDRQ  659 (1143)
T ss_pred             hhhhhcccChhhHHHHhhhhhh
Confidence            5666667777777777766543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-52  Score=428.22  Aligned_cols=433  Identities=22%  Similarity=0.234  Sum_probs=332.2

Q ss_pred             HHHHHHHcCCHHH-HHHHH-----HcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCC-CCCCCCCCCchHHHHhh
Q psy2356           7 SFLRAARAGHLDK-IIEHL-----KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN-VDSATKKGNTALHIASL   79 (529)
Q Consensus         7 ~L~~A~~~g~~~~-v~~ll-----~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~l~~a~~   79 (529)
                      -|+.|+..|+.+- +..+.     ..|++....+..+.||||.|+..||.|+|+.|++++++ ....|..|.||||+|+.
T Consensus         5 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~   84 (682)
T PHA02876          5 DLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICI   84 (682)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccC
Confidence            3677788887744 43333     23566666677899999999999999999999998877 46778889999999986


Q ss_pred             cCcccccccc-----c---------------------------------------cccCCCCCHHHHHHHcCcHHHHHHH
Q psy2356          80 GEFLVPVWLG-----D---------------------------------------FKQGDGFTPLAVAMQQGHDKVVAVL  115 (529)
Q Consensus        80 ~~~~~~~~~~-----~---------------------------------------~~~~~~~~~l~~A~~~~~~~~v~~L  115 (529)
                      .+........     .                                       .......++++.|+..++.+++++|
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~L  164 (682)
T PHA02876         85 IPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEML  164 (682)
T ss_pred             CCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHH
Confidence            6553211110     0                                       0011234577888888888888888


Q ss_pred             hhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCC----CCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccc
Q psy2356         116 LENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRG----KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLS  187 (529)
Q Consensus       116 l~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  187 (529)
                      ++.|++    +..|.||||+|+..|+.++|++|++.+++.    ..+.++++.|+..++.+++++|++.+....      
T Consensus       165 l~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~------  238 (682)
T PHA02876        165 LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNIN------  238 (682)
T ss_pred             HhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC------
Confidence            888765    667888888888888888888888887653    346788888888888888888886543322      


Q ss_pred             cccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCH-HHHHHHH
Q psy2356         188 STTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM-NIVIYLL  266 (529)
Q Consensus       188 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~-~~v~~Ll  266 (529)
                                              .+.++++.|+..++.+.+++|++.|++++..+..|.||||+|+..++. +++++|+
T Consensus       239 ------------------------~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl  294 (682)
T PHA02876        239 ------------------------KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLL  294 (682)
T ss_pred             ------------------------CCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence                                    234678888888888888888888888888888888888888888876 5788888


Q ss_pred             HCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCcccccccCCcHHHHHHHcC-ChhHHHHhhhhcccccccCCC
Q psy2356         267 QNDANPDIPTVRGETPLHLAARAN-QTDIIRILLRNGAQVDARAREGHTALSIAQKLG-YISVEESLGAAERSQLKKRGR  344 (529)
Q Consensus       267 ~~g~~~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~  344 (529)
                      +.|++++..+..|.||||+|+..| ..+++++|+..|++++..+..|.||||+|+..+ +.++++.|+ ..+.+++..+.
T Consensus       295 ~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl-~~gadin~~d~  373 (682)
T PHA02876        295 ERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLL-ELGANVNARDY  373 (682)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHH-HcCCCCccCCC
Confidence            888888888888888888888887 588888888888888888888888888888754 455555554 45677788888


Q ss_pred             CCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCH-HHHHHHHhcCCCCCCCchhHHHHHH
Q psy2356         345 EGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRV-GVAELLLKNNAQVDTPTKMDIATTL  423 (529)
Q Consensus       345 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~~L  423 (529)
                      .|.||||+|+..++.+++++|.+.      ..+.+..+..|.||||+|+..++. .++++|+                  
T Consensus       374 ~G~TpLh~Aa~~~~~~iv~~Ll~~------gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll------------------  429 (682)
T PHA02876        374 CDKTPIHYAAVRNNVVIINTLLDY------GADIEALSQKIGTALHFALCGTNPYMSVKTLI------------------  429 (682)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHC------CCCccccCCCCCchHHHHHHcCCHHHHHHHHH------------------
Confidence            888888888888888888887322      223355666788888888776553 3445444                  


Q ss_pred             HHcCCCCCCcccCCCCHHHHHHHcC-cHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         424 LEYGAKPNAESVAGFTPLHLSASEG-HADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       424 ~~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                       +.|+++|.++..|+||||+|+..| +.+++++|+++|++++..|..|.||+++|+.++  .+++.|+.+++...
T Consensus       430 -~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~  501 (682)
T PHA02876        430 -DRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELR  501 (682)
T ss_pred             -hCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCC
Confidence             457788999999999999999876 689999999999999999999999999999765  58999998887655

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-51  Score=420.54  Aligned_cols=382  Identities=24%  Similarity=0.274  Sum_probs=328.8

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHc----------------------------------
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVD-INTANANGLNALHLASKD----------------------------------   47 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~----------------------------------   47 (529)
                      .|.||||.||..|+.|+|+.|++++.+ +...|..|+||||+|+..                                  
T Consensus        40 ~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  119 (682)
T PHA02876         40 IPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDE  119 (682)
T ss_pred             ccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHH
Confidence            578999999999999999999998766 567788999999987733                                  


Q ss_pred             ------------------------------------CChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcccccccccc
Q psy2356          48 ------------------------------------GHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDF   91 (529)
Q Consensus        48 ------------------------------------g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~   91 (529)
                                                          |+.+++++|++.|++++.++                        
T Consensus       120 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d------------------------  175 (682)
T PHA02876        120 ACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKD------------------------  175 (682)
T ss_pred             HHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCC------------------------
Confidence                                                44555555555555555444                        


Q ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCCh
Q psy2356          92 KQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDT  167 (529)
Q Consensus        92 ~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~  167 (529)
                        ..|.||||+|+..|+.++|++|++.|++    +..|.|||+.|+..++.+++++|++.+.......++++.|+..++.
T Consensus       176 --~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~  253 (682)
T PHA02876        176 --IYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDL  253 (682)
T ss_pred             --CCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCH
Confidence              4566677788999999999999999876    5678999999999999999999999988877788899999999999


Q ss_pred             HHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCH-HHHHHHHhCCCCCcccCCCC
Q psy2356         168 KAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNE-GVANILLDKRADVNFSAKSG  246 (529)
Q Consensus       168 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~-~~v~~Ll~~g~~~~~~~~~~  246 (529)
                      +++++|++.|                          .+++..+..|.||||+|+..++. +++++|++.|++++..+..|
T Consensus       254 ~~~~~Ll~~g--------------------------~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g  307 (682)
T PHA02876        254 ETSLLLYDAG--------------------------FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKG  307 (682)
T ss_pred             HHHHHHHHCC--------------------------CCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCC
Confidence            9999998654                          45566777899999999999986 69999999999999999999


Q ss_pred             CcHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCC
Q psy2356         247 LTPLHVASFMG-CMNIVIYLLQNDANPDIPTVRGETPLHLAARA-NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY  324 (529)
Q Consensus       247 ~~~l~~a~~~~-~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  324 (529)
                      .||||.|+..| ..+.++.|+..|++++..+..|.||||+|+.. ++.+++++|+++|++++.++..|.||||+|+..|+
T Consensus       308 ~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~  387 (682)
T PHA02876        308 ETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN  387 (682)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCC
Confidence            99999999999 59999999999999999999999999999985 57899999999999999999999999999999999


Q ss_pred             hhHHHHhhhhcccccccCCCCCCcHHHHHHHhCch-hHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcC-CHHHHH
Q psy2356         325 ISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI-SVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQED-RVGVAE  402 (529)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~  402 (529)
                      .+++++|++. +.+++..+..|.||||+|+..+.. .+++.|.      ....+.+..+..|.||||+|+..+ +.++++
T Consensus       388 ~~iv~~Ll~~-gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll------~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~  460 (682)
T PHA02876        388 VVIINTLLDY-GADIEALSQKIGTALHFALCGTNPYMSVKTLI------DRGANVNSKNKDLSTPLHYACKKNCKLDVIE  460 (682)
T ss_pred             HHHHHHHHHC-CCCccccCCCCCchHHHHHHcCCHHHHHHHHH------hCCCCCCcCCCCCChHHHHHHHhCCcHHHHH
Confidence            9999999865 467888889999999999976664 4566662      223344778999999999999977 578888


Q ss_pred             HHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCc
Q psy2356         403 LLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS  464 (529)
Q Consensus       403 ~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  464 (529)
                      +|+++                   |+|+|.++..|.|||++|+.++  ++++.|+.+|+++.
T Consensus       461 lLl~~-------------------Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~  501 (682)
T PHA02876        461 MLLDN-------------------GADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELR  501 (682)
T ss_pred             HHHHC-------------------CCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCC
Confidence            77765                   6677899999999999999876  58999999999875

>KOG4177|consensus

Probab=100.00  E-value=1.5e-52  Score=417.09  Aligned_cols=503  Identities=32%  Similarity=0.458  Sum_probs=443.0

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhc
Q psy2356           1 SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG   80 (529)
Q Consensus         1 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~   80 (529)
                      |+.|.|++|+|+-.|+.++++.++++++.++....+|.||||.|++.|+.++++.|+..|+.++..+..+.||||.|...
T Consensus        51 sk~~~~pl~~aa~~~~~~v~~~ll~~~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~~  130 (1143)
T KOG4177|consen   51 SKSGFTPLHIAAHYGNENVAELLLNRGAIVNATARNGITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAARK  130 (1143)
T ss_pred             cccccCHHHHHhhhhhhhhhhhhhccccccCcccccCccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Cccccccc-------cccccCCCCCHHHHH-----------------------HHcCcHHHHHHHhhcCCC----CCCCC
Q psy2356          81 EFLVPVWL-------GDFKQGDGFTPLAVA-----------------------MQQGHDKVVAVLLENDTR----GKDGF  126 (529)
Q Consensus        81 ~~~~~~~~-------~~~~~~~~~~~l~~A-----------------------~~~~~~~~v~~Ll~~~~~----~~~~~  126 (529)
                      +......+       ....+..|.||+++|                       ..+++.++++.++....+    +..+.
T Consensus       131 g~~~~~~~ll~~~a~~~~k~~~g~t~l~~a~~~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~  210 (1143)
T KOG4177|consen  131 GHVQVIELLLQHGAPINIKTKNGLSPLHMAAQVACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPNASALNGF  210 (1143)
T ss_pred             ccHHHHHHHHHccCCCcccccCCCCchhhhcchhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCccccccCCC
Confidence            87622221       245566666666554                       445555555655554333    67788


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCC----CCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcc-------cccccCCchh
Q psy2356         127 TPLAVAMQQGHDKVVAVLLENDTR----GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASV-------LSSTTGNAAT  195 (529)
Q Consensus       127 ~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-------~~~~~~~~~~  195 (529)
                      ||++.|+..+...+++.++.++.+    +..+.+++|.|+..|+.+++++++.+|..++...+       ...+.+..+.
T Consensus       211 tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~  290 (1143)
T KOG4177|consen  211 TPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEV  290 (1143)
T ss_pred             CchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhh
Confidence            999999999999999999998765    55678999999999999999999999998876665       4455688999


Q ss_pred             hHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy2356         196 GGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIP  275 (529)
Q Consensus       196 ~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~  275 (529)
                      .++++++|.++........|++|.|...|..++++.+++.++.++..+..+.+|+|.++..++.++..+|...+..-...
T Consensus       291 ~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a  370 (1143)
T KOG4177|consen  291 CKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQA  370 (1143)
T ss_pred             HhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHH
Q psy2356         276 TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK  355 (529)
Q Consensus       276 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~  355 (529)
                      +..+.+|+|.|+..|..+++++++.+|++++.....|.||+|.|+..++..+++.++. .....+..+..|.|++|.|+.
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~-~gA~~~~~~~lG~T~lhvaa~  449 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLK-RGASPNAKAKLGYTPLHVAAK  449 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEec-cCCChhhHhhcCCChhhhhhh
Confidence            8999999999999999999999999999999999999999999999999999999976 456678888899999999999


Q ss_pred             hCc-hhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC--------------chhHHH
Q psy2356         356 LGY-ISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP--------------TKMDIA  420 (529)
Q Consensus       356 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~--------------~~~~~~  420 (529)
                      .+. .+...      ..+....+.+.....|.||||.|+..|+.++++.|++.++..+..              ......
T Consensus       450 ~g~~~~~~~------~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~  523 (1143)
T KOG4177|consen  450 KGRYLQIAR------LLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVA  523 (1143)
T ss_pred             cccHhhhhh------hHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHH
Confidence            994 33322      223455566888899999999999999999999999998655522              446778


Q ss_pred             HHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhcc
Q psy2356         421 TTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAK  500 (529)
Q Consensus       421 ~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  500 (529)
                      +.++++|++++.++..|+||||+|+.+|++.+||+|+++|+|++.+++.|+||||.|+..|+.+|+++|+++++++...+
T Consensus       524 ~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  524 KILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD  603 (1143)
T ss_pred             HHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCccccch
Q psy2356         501 GDGEKHKVVA  510 (529)
Q Consensus       501 ~~~~~~~~~~  510 (529)
                      .++.+.+...
T Consensus       604 ~~g~TpL~iA  613 (1143)
T KOG4177|consen  604 LDGFTPLHIA  613 (1143)
T ss_pred             ccCcchhHHH
Confidence            8887766554

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.3e-49  Score=377.08  Aligned_cols=358  Identities=20%  Similarity=0.248  Sum_probs=267.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHH--cCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcc
Q psy2356           6 TSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASK--DGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL   83 (529)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~   83 (529)
                      -+++.++..++.+.++.+++...     ...+.++||.++.  .++.++|++|+++|++++.++..|.||||+|      
T Consensus        11 ~sl~~~~~~~n~~~~~~~l~~~~-----~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~A------   79 (446)
T PHA02946         11 LSLYAKYNSKNLDVFRNMLQAIE-----PSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIA------   79 (446)
T ss_pred             HHHHHHHccCcHHHHHHHHhccC-----CCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHH------
Confidence            35678888888898888887421     1234678887764  4467889999999999988888888876644      


Q ss_pred             ccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcC--cHHHHHHHHhcCCCCCCCcCH
Q psy2356          84 VPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQG--HDKVVAVLLENDTRGKVRLPA  157 (529)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~  157 (529)
                                          +..|+.+++++|+++|++    +..|.||||+|+..+  ..+++++|++.+++       
T Consensus        80 --------------------a~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad-------  132 (446)
T PHA02946         80 --------------------SKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK-------  132 (446)
T ss_pred             --------------------HHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-------
Confidence                                778888999999988765    678889999888765  47788888765543       


Q ss_pred             HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy2356         158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD-VTSKSGFTPLHIASHYGNEGVANILLDKR  236 (529)
Q Consensus       158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  236 (529)
                                                                      ++ ..+..|.|||+ |+..++.+++++|++.|
T Consensus       133 ------------------------------------------------in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g  163 (446)
T PHA02946        133 ------------------------------------------------INNSVDEEGCGPLL-ACTDPSERVFKKIMSIG  163 (446)
T ss_pred             ------------------------------------------------cccccCCCCCcHHH-HHHCCChHHHHHHHhcc
Confidence                                                            22 23456677776 55567777777777777


Q ss_pred             CCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCcccccccC
Q psy2356         237 ADVNFSAKSGLTPLHVASFMG--CMNIVIYLLQNDANPDIPTVRGETPLHLAARAN--QTDIIRILLRNGAQVDARAREG  312 (529)
Q Consensus       237 ~~~~~~~~~~~~~l~~a~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g  312 (529)
                      ++++..+..|+||||.|+..+  +.+++++|++.|++++..|..|.||||+|+..+  +.+++++|++ |++++.++..|
T Consensus       164 ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G  242 (446)
T PHA02946        164 FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFG  242 (446)
T ss_pred             ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCC
Confidence            777777777777777776544  357777777777777777777778888777765  6777777774 77777777777


Q ss_pred             CcHHHHHHHcCC-hhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHH
Q psy2356         313 HTALSIAQKLGY-ISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL  391 (529)
Q Consensus       313 ~t~l~~a~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~  391 (529)
                      .||||+|+..++ .++++.|+..... .     .++ +++.++..+..++++.+        ...+    ...|.||||+
T Consensus       243 ~TpLh~A~~~~~~~~~~~~Ll~~g~~-~-----~~~-~~~~a~~~~~~~~~e~l--------~~~g----~~~~~TpLh~  303 (446)
T PHA02946        243 DSPLTLLIKTLSPAHLINKLLSTSNV-I-----TDQ-TVNICIFYDRDDVLEII--------NDKG----KQYDSTDFKM  303 (446)
T ss_pred             CCHHHHHHHhCChHHHHHHHHhCCCC-C-----CCc-HHHHHHHcCchHHHHHH--------HHcC----cccCCCHHHH
Confidence            788877777776 3667776654321 1     122 36777777777776666        2211    1347799999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCC
Q psy2356         392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH  471 (529)
Q Consensus       392 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  471 (529)
                      |+..|+.+++++|+++|.                          .|+||||+|+..++.++|++|+.+|++++.. ..|.
T Consensus       304 Aa~~g~~eivk~Ll~~~~--------------------------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~  356 (446)
T PHA02946        304 AVEVGSIRCVKYLLDNDI--------------------------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGH  356 (446)
T ss_pred             HHHcCCHHHHHHHHHCCC--------------------------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccc
Confidence            999999999999998643                          3789999999999999999999999999985 5799


Q ss_pred             CHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         472 TALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       472 t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      |||++|++.++.++++.|++..++..
T Consensus       357 t~l~~a~~~~~~~~~~~ll~~~~~~~  382 (446)
T PHA02946        357 TCMSECVRLNNPVILSKLMLHNPTSE  382 (446)
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccHH
Confidence            99999999999999999999766554

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.2e-48  Score=380.73  Aligned_cols=415  Identities=18%  Similarity=0.137  Sum_probs=305.9

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCChHHHHHHHc---CChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccc------ccc
Q psy2356          17 LDKIIEHLKNNVDINTANANGLNALHLASKD---GHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLV------PVW   87 (529)
Q Consensus        17 ~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~------~~~   87 (529)
                      ++.||.|+..|..++.+|.+|+||||+|+..   |+.++|++|++.|++++..+..|.||||+|+..+...      ..+
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L   91 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL   91 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence            5778889888888888899999999997555   7799999999999999999999999999998877531      111


Q ss_pred             ccc---cccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHH--HcCcHHHHHHHHhcCCCCC------
Q psy2356          88 LGD---FKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAM--QQGHDKVVAVLLENDTRGK------  152 (529)
Q Consensus        88 ~~~---~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~--~~~~~~~v~~Ll~~~~~~~------  152 (529)
                      +..   ..-.....++++|+..++.++|++|+++|++    +..|.|||+.++  ..|+.+++++|++++++..      
T Consensus        92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~  171 (661)
T PHA02917         92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDD  171 (661)
T ss_pred             HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccc
Confidence            111   0111223667889999999999999999887    678999999654  5789999999999987642      


Q ss_pred             -CC-----------cCHHHHHhh-----------CCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcC
Q psy2356         153 -VR-----------LPALHIAAK-----------KDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT  209 (529)
Q Consensus       153 -~~-----------~~~l~~a~~-----------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  209 (529)
                       .+           .||||+|+.           .++.+++++|+                          +.|++++..
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li--------------------------~~Gadvn~~  225 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLI--------------------------NHGIKPSSI  225 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHH--------------------------HCCCCcccC
Confidence             12           499999975           35678888888                          556677788


Q ss_pred             CCCCCCHHHHHHHcCCH--HHHHHHHhCCCCCc----ccCCCCCcHHHHHHHc-------C--CHHHHHHHHHCCCCCCC
Q psy2356         210 SKSGFTPLHIASHYGNE--GVANILLDKRADVN----FSAKSGLTPLHVASFM-------G--CMNIVIYLLQNDANPDI  274 (529)
Q Consensus       210 ~~~~~t~l~~A~~~~~~--~~v~~Ll~~g~~~~----~~~~~~~~~l~~a~~~-------~--~~~~v~~Ll~~g~~~~~  274 (529)
                      +..|.||||+|+..|+.  +++++|++ |++++    ..+..+.+|++.|+..       .  +.+++++|++.|++...
T Consensus       226 d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~  304 (661)
T PHA02917        226 DKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGI  304 (661)
T ss_pred             CCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCce
Confidence            89999999999999985  79999975 87765    3556678888888842       1  77999999999986321


Q ss_pred             -------CCC------------CCCcHHHH---HHHcCC--HHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHH
Q psy2356         275 -------PTV------------RGETPLHL---AARANQ--TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEES  330 (529)
Q Consensus       275 -------~~~------------~~~t~l~~---a~~~~~--~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  330 (529)
                             .+.            .+.+++|.   ++..|.  .+++++|+++|++++.++..|.++.    .....++++.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~  380 (661)
T PHA02917        305 MCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKY  380 (661)
T ss_pred             eEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHH
Confidence                   111            12233333   333554  5588888888888888887887643    3556778888


Q ss_pred             hhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy2356         331 LGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQ  410 (529)
Q Consensus       331 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  410 (529)
                      |+...+.+....+..|.||||.|++.+..... +.             ......|....  +...+..+           
T Consensus       381 LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~-~~-------------~~~~~~~~~~~--~~~~~~~~-----------  433 (661)
T PHA02917        381 LLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYN-FY-------------TYTYKKGLCDM--SYACPILS-----------  433 (661)
T ss_pred             HHHhcCCCccccCCCCCChhHHHHHhcccchh-hh-------------hhhhhhccchh--hhhhhhHH-----------
Confidence            87765655555555688888877665443221 00             00000111111  11122344           


Q ss_pred             CCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHH-hCCchHHHHh
Q psy2356         411 VDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK-LGYISVEESL  489 (529)
Q Consensus       411 ~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~-~~~~~~~~~L  489 (529)
                              +++.|+.+|+|+|.++..|+||||+|+..++.+++++|+++|++++..|..|.|||++|+. .++.+++++|
T Consensus       434 --------~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~L  505 (661)
T PHA02917        434 --------TINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKML  505 (661)
T ss_pred             --------HHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHH
Confidence                    4455555677889999999999999999999999999999999999999999999999996 6889999999


Q ss_pred             hcccchhh
Q psy2356         490 KGVTETLI  497 (529)
Q Consensus       490 ~~~~~~~~  497 (529)
                      +++++++.
T Consensus       506 L~~ga~i~  513 (661)
T PHA02917        506 LCHKPTLD  513 (661)
T ss_pred             HHcCCChh
Confidence            99998775

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.4e-47  Score=373.67  Aligned_cols=389  Identities=19%  Similarity=0.170  Sum_probs=248.2

Q ss_pred             HcCCHHHHHHHHHcC-CCCCCC-CCCCChHHHHHHHc--CChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccc
Q psy2356          13 RAGHLDKIIEHLKNN-VDINTA-NANGLNALHLASKD--GHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWL   88 (529)
Q Consensus        13 ~~g~~~~v~~ll~~~-~~~~~~-~~~g~t~L~~A~~~--g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~   88 (529)
                      +.+++++|++|++.| ++++.. +..|.||||+|+..  ++.+++++|+++|++++.++..|.||||             
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH-------------  217 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLH-------------  217 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHH-------------
Confidence            468999999999999 999988 89999999998654  6789999999999999988777666555             


Q ss_pred             cccccCCCCCHHHHHHHcCc--HHHHHHHhhcCCC----CCCCCcHHHHHH---HcCcHHHHHHHHhcCCCCCCCcC--H
Q psy2356          89 GDFKQGDGFTPLAVAMQQGH--DKVVAVLLENDTR----GKDGFTPLAVAM---QQGHDKVVAVLLENDTRGKVRLP--A  157 (529)
Q Consensus        89 ~~~~~~~~~~~l~~A~~~~~--~~~v~~Ll~~~~~----~~~~~~~l~~A~---~~~~~~~v~~Ll~~~~~~~~~~~--~  157 (529)
                                   +|+..|+  .++|++|+++|++    +..|.|||+.|+   ..++.++++.+++..........  +
T Consensus       218 -------------~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~  284 (764)
T PHA02716        218 -------------TYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMI  284 (764)
T ss_pred             -------------HHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhh
Confidence                         5566774  5899999999877    678999999875   45788888888775322221111  1


Q ss_pred             H---HHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHH--cCCHHHHHHH
Q psy2356         158 L---HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH--YGNEGVANIL  232 (529)
Q Consensus       158 l---~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~--~~~~~~v~~L  232 (529)
                      +   ..|+..|+.++++.|++                          .|.+++.++..|.||||+|+.  .++.+++++|
T Consensus       285 L~~~i~AA~~g~leiVklLLe--------------------------~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklL  338 (764)
T PHA02716        285 LHSYITLARNIDISVVYSFLQ--------------------------PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLL  338 (764)
T ss_pred             hHHHHHHHHcCCHHHHHHHHh--------------------------CCCceeccCCCCCCHHHHHHHHhCCCchHHHHH
Confidence            1   22445555555555553                          233344455555666665443  2345566666


Q ss_pred             HhCCCCCcccCCCCCcHHHHHHH--------------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHH----HHHcCCHHH
Q psy2356         233 LDKRADVNFSAKSGLTPLHVASF--------------MGCMNIVIYLLQNDANPDIPTVRGETPLHL----AARANQTDI  294 (529)
Q Consensus       233 l~~g~~~~~~~~~~~~~l~~a~~--------------~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~----a~~~~~~~~  294 (529)
                      +++|++++.+|..|+||||.|+.              .++.+++++|+++|++++.++..|.||||.    |...+..++
T Consensus       339 Le~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dI  418 (764)
T PHA02716        339 HEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDI  418 (764)
T ss_pred             HHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHH
Confidence            66666665555556666655543              134555555555555555555555555552    112344555


Q ss_pred             HHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhh-----
Q psy2356         295 IRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT-----  369 (529)
Q Consensus       295 ~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-----  369 (529)
                      +++|++.|+........+.                .       .+...+. ...++|.++..+..+...+.....     
T Consensus       419 vklLis~~~~~~~~~~~~q----------------~-------ll~~~d~-~~~~lhh~~a~~~~~~~~~~~~~~~~~~~  474 (764)
T PHA02716        419 IDCLISDKVLNMVKHRILQ----------------D-------LLIRVDD-TPCIIHHIIAKYNIPTDLYTDEYEPYDST  474 (764)
T ss_pred             HHHHHhCcchhhhhhhhhh----------------h-------hhhccCc-chhhHHHHHHhcCcchhhhhhhhhhcccc
Confidence            5555555433211110000                0       0011111 112234444433333322221111     


Q ss_pred             -------hHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHH
Q psy2356         370 -------ETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH  442 (529)
Q Consensus       370 -------~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~  442 (529)
                             ..+......+..+..|+||||+|+..|+.+++              ..+.+++|++.|+|+|.++..|+||||
T Consensus       475 ~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v--------------~~e~~k~LL~~GADIN~~d~~G~TPLh  540 (764)
T PHA02716        475 KIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANI--------------VMDSFVYLLSIQYNINIPTKNGVTPLM  540 (764)
T ss_pred             ccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccch--------------hHHHHHHHHhCCCCCcccCCCCCCHHH
Confidence                   01123334567788999999999999876443              012233344457788999999999999


Q ss_pred             HHHHcCcH-----HHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         443 LSASEGHA-----DMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       443 ~A~~~~~~-----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      +|+++|+.     ++|++|+++|++++..      .+++|..+++.+++.+|.+.++.+.
T Consensus       541 ~A~~~g~~~~~~~eIvk~LL~~ga~~~~~------~l~~~~~~~~~~~~~ll~~~~~~~~  594 (764)
T PHA02716        541 LTMRNNRLSGHQWYIVKNILDKRPNVDIV------IIFLDKCYANGKFPSLLLSEDDIIK  594 (764)
T ss_pred             HHHHcCCccccHHHHHHHHHhcCCCcchH------HHHHHhhhhhhHHHHHHHHcchhHH
Confidence            99999976     9999999999999775      4899999999999999999887554

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=8e-47  Score=362.49  Aligned_cols=415  Identities=16%  Similarity=0.139  Sum_probs=259.8

Q ss_pred             HHHHHHHHHcCCCCC-CCCCCCChHHHHHHHcC---ChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccc
Q psy2356          17 LDKIIEHLKNNVDIN-TANANGLNALHLASKDG---HLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFK   92 (529)
Q Consensus        17 ~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~   92 (529)
                      ...++..++...+++ .+|..|+||||+|+..|   +.++|++|+++||+++..|..|+||||+|               
T Consensus        20 ~~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~A---------------   84 (672)
T PHA02730         20 YKKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVY---------------   84 (672)
T ss_pred             HHHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHH---------------
Confidence            456677777766777 77888999999999886   58999999999999988777766666644               


Q ss_pred             cCCCCCHHHHHHHcC--cHHHHHHHhhcCCC------CCCCCcHHHHHHH--cCcHHHHHHHHh-cCCC----C-----C
Q psy2356          93 QGDGFTPLAVAMQQG--HDKVVAVLLENDTR------GKDGFTPLAVAMQ--QGHDKVVAVLLE-NDTR----G-----K  152 (529)
Q Consensus        93 ~~~~~~~l~~A~~~~--~~~~v~~Ll~~~~~------~~~~~~~l~~A~~--~~~~~~v~~Ll~-~~~~----~-----~  152 (529)
                                 +..+  +.++|++|++.|+.      +..+.+|++.++.  .++.+++++|+. .+.+    .     .
T Consensus        85 -----------a~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~  153 (672)
T PHA02730         85 -----------SKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHC  153 (672)
T ss_pred             -----------HHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccc
Confidence                       5544  78999999988652      4447788888888  888899999995 3222    1     2


Q ss_pred             CCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHH------HcCCH
Q psy2356         153 VRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIAS------HYGNE  226 (529)
Q Consensus       153 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~------~~~~~  226 (529)
                      .+.++++.+...++.+++++|+++|+++......                +  .+..+.-..+.||+++      .+++.
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~----------------~--~~~~~~~c~~~l~~~il~~~~~~~n~~  215 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFR----------------S--CMYDSDRCKNSLHYYILSHRESESLSK  215 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHcCCcccccccc----------------c--ccccCCccchhHHHHHHhhhhhhccCH
Confidence            4578899999999999999999988876311000                0  0112222234444332      34567


Q ss_pred             HHHHHHHhCCCCCcccCCCCCcHHHH--HHHcCCHHHHHHHHHCCCCCCCC-CC---CCCcHHHHHH----Hc---C-CH
Q psy2356         227 GVANILLDKRADVNFSAKSGLTPLHV--ASFMGCMNIVIYLLQNDANPDIP-TV---RGETPLHLAA----RA---N-QT  292 (529)
Q Consensus       227 ~~v~~Ll~~g~~~~~~~~~~~~~l~~--a~~~~~~~~v~~Ll~~g~~~~~~-~~---~~~t~l~~a~----~~---~-~~  292 (529)
                      +++++|+++|++++.+|..|.||||+  +...++.|++++|++.-.+...- |.   .-+..|+--.    +.   | +.
T Consensus       216 eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  295 (672)
T PHA02730        216 DVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM  295 (672)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch
Confidence            78888888888888888888888874  44455678888888721111000 00   0011111100    00   0 23


Q ss_pred             HHHHHHHHCCCCc-------ccccccCCc---------------------HHHHHHHcC---ChhHHHHhhhhccccccc
Q psy2356         293 DIIRILLRNGAQV-------DARAREGHT---------------------ALSIAQKLG---YISVEESLGAAERSQLKK  341 (529)
Q Consensus       293 ~~~~~Ll~~g~~~-------~~~~~~g~t---------------------~l~~a~~~~---~~~~~~~l~~~~~~~~~~  341 (529)
                      ++|+.|++.+...       -..+..|.+                     .|+.-...+   +.++++.|++.+ ++++.
T Consensus       296 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G-AdIN~  374 (672)
T PHA02730        296 EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG-ATMDK  374 (672)
T ss_pred             HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC-CCCCc
Confidence            3444444422210       012222221                     333333322   344555554332 33333


Q ss_pred             CCCCCCcHHHHHHHhCc----hhHHHHhhhhhhHHHHhhc----CCCCCCCCchHHHH---HHHcCC----HHHHHHHHh
Q psy2356         342 RGREGHTALSIAQKLGY----ISVEESLKGVTETLIIAKG----DGEKHKNGLTPLHL---CAQEDR----VGVAELLLK  406 (529)
Q Consensus       342 ~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~----~~~~~~~g~t~L~~---A~~~~~----~~~~~~Ll~  406 (529)
                      . ..|.||||+|+..+.    .+++++|        ...+    .+..+..|.||||.   |...+.    .+.      
T Consensus       375 k-~~G~TpLH~Aa~~nnn~i~~eIvelL--------Is~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~------  439 (672)
T PHA02730        375 T-TDNNYPLHDYFVNNNNIVDVNVVRFI--------VENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYET------  439 (672)
T ss_pred             C-CCCCcHHHHHHHHcCCcchHHHHHHH--------HHcCCCccccccccCCCchHhHHHHHHhccccccccch------
Confidence            2 345555555544442    4555544        2221    23344556666653   221110    010      


Q ss_pred             cCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhh-cCCCHHHHHHHh--CCc
Q psy2356         407 NNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAK-EGHTALSIAQKL--GYI  483 (529)
Q Consensus       407 ~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~--~~~  483 (529)
                              ...+++++|+.+|+|+|.+|..|+||||+|+..++.+++++|+++|++++..|. .|.|||++|+..  ++.
T Consensus       440 --------~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~  511 (672)
T PHA02730        440 --------ILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKT  511 (672)
T ss_pred             --------hHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcH
Confidence                    012456666667888999999999999999999999999999999999999997 599999999974  789


Q ss_pred             hHHHHhhcccchhhhc
Q psy2356         484 SVEESLKGVTETLIIA  499 (529)
Q Consensus       484 ~~~~~L~~~~~~~~~~  499 (529)
                      +++++|+++++.+...
T Consensus       512 eIv~~LLs~ga~i~~I  527 (672)
T PHA02730        512 KLVDLLLSYHPTLETM  527 (672)
T ss_pred             HHHHHHHHcCCCHHHH
Confidence            9999999999877643

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-46  Score=372.71  Aligned_cols=391  Identities=17%  Similarity=0.124  Sum_probs=319.2

Q ss_pred             hhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCC
Q psy2356          50 LHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDG  125 (529)
Q Consensus        50 ~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~  125 (529)
                      ++.|+.|+..|.+.+..|..|.||||+|+                       .|+..|+.++|++|++.|++    +..|
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~-----------------------~~~~~~~~~~v~~Ll~~ga~v~~~~~~g   68 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYL-----------------------FNEHCNNVEVVKLLLDSGTNPLHKNWRQ   68 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHH-----------------------HhhhcCcHHHHHHHHHCCCCccccCCCC
Confidence            57889999999999999999999999885                       45667999999999999877    6778


Q ss_pred             CcHHHHHHHcCcH----HHHHHHHhcCC--CCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHH
Q psy2356         126 FTPLAVAMQQGHD----KVVAVLLENDT--RGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYL  199 (529)
Q Consensus       126 ~~~l~~A~~~~~~----~~v~~Ll~~~~--~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l  199 (529)
                      .|||+.|+..|+.    ++++.|++.+.  ......+++++|+..++.+++++|++                        
T Consensus        69 ~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~------------------------  124 (661)
T PHA02917         69 LTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVE------------------------  124 (661)
T ss_pred             CCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHH------------------------
Confidence            9999999999985    45677876532  22222356788999999999999995                        


Q ss_pred             HhCCCCCCcCCCCCCCHHHHHH--HcCCHHHHHHHHhCCCCCcccCC---CC-----------CcHHHHHHH--------
Q psy2356         200 IKNEHNPDVTSKSGFTPLHIAS--HYGNEGVANILLDKRADVNFSAK---SG-----------LTPLHVASF--------  255 (529)
Q Consensus       200 ~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~v~~Ll~~g~~~~~~~~---~~-----------~~~l~~a~~--------  255 (529)
                        .|++++.++..|.|||+.++  ..|+.+++++|+++|++++..+.   .|           .||||+|+.        
T Consensus       125 --~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~  202 (661)
T PHA02917        125 --HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESD  202 (661)
T ss_pred             --cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhccccccc
Confidence              55667788889999999654  57899999999999999986543   23           599999986        


Q ss_pred             ---cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHHCCCCcc----cccccCCcHHHHHHH-----
Q psy2356         256 ---MGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT--DIIRILLRNGAQVD----ARAREGHTALSIAQK-----  321 (529)
Q Consensus       256 ---~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~g~~~~----~~~~~g~t~l~~a~~-----  321 (529)
                         .++.+++++|++.|++++..+..|.||||+|+..|+.  +++++|++ |++.+    ..+..|.+++++|+.     
T Consensus       203 ~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~  281 (661)
T PHA02917        203 TRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDY  281 (661)
T ss_pred             ccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhc
Confidence               4689999999999999999999999999999999985  79999975 88765    355567788888873     


Q ss_pred             --c--CChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHH---HHHH
Q psy2356         322 --L--GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLH---LCAQ  394 (529)
Q Consensus       322 --~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~---~A~~  394 (529)
                        +  .+.++++.|++.+..       .+.++++++...+..+++.++...              ..+.+++|   .|+.
T Consensus       282 ~~~~~v~~~iv~~Li~~Ga~-------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~  340 (661)
T PHA02917        282 RYNKDVDLDLVKLFLENGKP-------HGIMCSIVPLWRNDKETISLILKT--------------MNSDVLQHILIEYMT  340 (661)
T ss_pred             cccccchHHHHHHHHhCCCC-------CceeEeeecccccchHHHHHHHHH--------------hchHHHHHHHHHHHH
Confidence              1  277999999887631       356788889999998988877421              11233444   4555


Q ss_pred             cCC--HHHHHHHHhcCCCCCCC----------chhHHHHHHHH-cCCCCCCcccCCCCHHHHHHHcC-------------
Q psy2356         395 EDR--VGVAELLLKNNAQVDTP----------TKMDIATTLLE-YGAKPNAESVAGFTPLHLSASEG-------------  448 (529)
Q Consensus       395 ~~~--~~~~~~Ll~~~~~~~~~----------~~~~~~~~L~~-~g~~~~~~~~~g~t~L~~A~~~~-------------  448 (529)
                      .|.  .+++++|+++|++++..          ...+++++|+. .|++++.++.+|+||||.|++.+             
T Consensus       341 ~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~  420 (661)
T PHA02917        341 FGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKK  420 (661)
T ss_pred             cCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhh
Confidence            676  56999999999999954          23567888887 69998888888999999998543             


Q ss_pred             ----------cHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhccCCCCccccchh
Q psy2356         449 ----------HADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAP  511 (529)
Q Consensus       449 ----------~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  511 (529)
                                ..+++++|+.+|++++.+|..|.||||+|+..++.+++++|++.++++...+..+++.....-
T Consensus       421 ~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~  493 (661)
T PHA02917        421 GLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAI  493 (661)
T ss_pred             ccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence                      356889999999999999999999999999999999999999999999998888888766554

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-45  Score=350.12  Aligned_cols=394  Identities=16%  Similarity=0.102  Sum_probs=286.5

Q ss_pred             CCchhHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC--ChhHHHHHHHCCCCC--CCCCCCCCchH
Q psy2356           2 GEGHTSFLRAARAG---HLDKIIEHLKNNVDINTANANGLNALHLASKDG--HLHVVTELLSRGANV--DSATKKGNTAL   74 (529)
Q Consensus         2 ~~g~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~ga~~--~~~~~~~~~~l   74 (529)
                      .+|+||||+|+..|   +.++|++|+++|++++.+|..|+||||+|+..+  +.|+|++|++.|++.  +..+..+.+|+
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l  118 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDL  118 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchH
Confidence            47999999999997   599999999999999999999999999999977  799999999997655  55555555555


Q ss_pred             HHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhh-cCCC-----C----CCCCcHHHHHHHcCcHHHHHHH
Q psy2356          75 HIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE-NDTR-----G----KDGFTPLAVAMQQGHDKVVAVL  144 (529)
Q Consensus        75 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-~~~~-----~----~~~~~~l~~A~~~~~~~~v~~L  144 (529)
                      +.++                        +..+++.++|++|+. .+.+     +    ..|.+|++.+...++.++|++|
T Consensus       119 ~~y~------------------------~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklL  174 (672)
T PHA02730        119 YSYM------------------------SSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWL  174 (672)
T ss_pred             HHHH------------------------HhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHH
Confidence            5442                        234899999999996 3322     1    3678999999999999999999


Q ss_pred             HhcCCCCC-C------C-----cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCC
Q psy2356         145 LENDTRGK-V------R-----LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKS  212 (529)
Q Consensus       145 l~~~~~~~-~------~-----~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  212 (529)
                      ++++++.. .      .     .|.|++.+-.           +..         ......+++++|++.|++++.++..
T Consensus       175 i~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~-----------~~~---------~~~n~~eiv~lLIs~GadIN~kd~~  234 (672)
T PHA02730        175 LKSECYSTGYVFRSCMYDSDRCKNSLHYYILS-----------HRE---------SESLSKDVIKCLIDNNVSIHGRDEG  234 (672)
T ss_pred             HHcCCcccccccccccccCCccchhHHHHHHh-----------hhh---------hhccCHHHHHHHHHCCCCCCCCCCC
Confidence            99987752 0      1     1233322221           100         1223445555555788888999999


Q ss_pred             CCCHHHH--HHHcCCHHHHHHHHhCCCCCcccCCCCC----cHHHHHH------H--cCCHHHHHHHHHCCCCC------
Q psy2356         213 GFTPLHI--ASHYGNEGVANILLDKRADVNFSAKSGL----TPLHVAS------F--MGCMNIVIYLLQNDANP------  272 (529)
Q Consensus       213 ~~t~l~~--A~~~~~~~~v~~Ll~~g~~~~~~~~~~~----~~l~~a~------~--~~~~~~v~~Ll~~g~~~------  272 (529)
                      |.||||+  +...++.|++++|++...+.+..+....    ..|+--.      .  .-+.++|+.|++.+...      
T Consensus       235 G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  314 (672)
T PHA02730        235 GSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRS  314 (672)
T ss_pred             CCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhc
Confidence            9999995  5556779999999984333222211110    1111100      1  11456788888765431      


Q ss_pred             -CCCCCCCCc---------------------HHHHHHHcC---CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCC---
Q psy2356         273 -DIPTVRGET---------------------PLHLAARAN---QTDIIRILLRNGAQVDARAREGHTALSIAQKLGY---  324 (529)
Q Consensus       273 -~~~~~~~~t---------------------~l~~a~~~~---~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~---  324 (529)
                       ...+..|.+                     .|+.-..++   +.+++++|+++|++++.. ..|.||||+|+..++   
T Consensus       315 ~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i  393 (672)
T PHA02730        315 ITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIV  393 (672)
T ss_pred             cccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcc
Confidence             123333432                     566666655   689999999999999985 789999999988875   


Q ss_pred             -hhHHHHhhhhcc-cccccCCCCCCcHHHH---HHHhC---------chhHHHHhhhhhhHHHHhhcCCCCCCCCchHHH
Q psy2356         325 -ISVEESLGAAER-SQLKKRGREGHTALSI---AQKLG---------YISVEESLKGVTETLIIAKGDGEKHKNGLTPLH  390 (529)
Q Consensus       325 -~~~~~~l~~~~~-~~~~~~~~~~~~~l~~---a~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~  390 (529)
                       .+++++|++.+. .+++..+..|.||||.   +...+         ..+++++|      +....+.+..+..|.||||
T Consensus       394 ~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~L------Is~GADINakD~~G~TPLh  467 (672)
T PHA02730        394 DVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDIL------SKYMDDIDMIDNENKTLLY  467 (672)
T ss_pred             hHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHH------HhcccchhccCCCCCCHHH
Confidence             899999998765 4788889999999984   32222         12345666      1122234788999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCccc-CCCCHHHHHHHc--CcHHHHHHHHhCCCCCcc
Q psy2356         391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV-AGFTPLHLSASE--GHADMSAMLLEHGADVSH  465 (529)
Q Consensus       391 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~-~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~  465 (529)
                      +|+..++.+++++|+++|                   +++|.++. .|.||||+|+.+  ++.+++++|+++|++++.
T Consensus       468 ~Aa~~~~~eive~LI~~G-------------------AdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~~  526 (672)
T PHA02730        468 YAVDVNNIQFARRLLEYG-------------------ASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLET  526 (672)
T ss_pred             HHHHhCCHHHHHHHHHCC-------------------CCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHHH
Confidence            999999999999888874                   56677775 599999999974  789999999999998753

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.7e-44  Score=345.99  Aligned_cols=344  Identities=21%  Similarity=0.274  Sum_probs=274.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccc
Q psy2356           6 TSFLRAARAGHLDKIIEHLKN-NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLV   84 (529)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~   84 (529)
                      ..|..|+..|+++.|+.|++. +..++..+..|.||||.|+..|+.++|++|++.|++++..+..|              
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~--------------   68 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKI--------------   68 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--------------
Confidence            468999999999999999985 55578888899999999999999999999999999998766544              


Q ss_pred             cccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhC
Q psy2356          85 PVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKK  164 (529)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~  164 (529)
                                  .|||+.|+..|+.+++++|+++|.+...    +  +                             ...
T Consensus        69 ------------~t~L~~A~~~~~~~iv~~Ll~~g~~~~~----~--~-----------------------------~~~  101 (434)
T PHA02874         69 ------------PHPLLTAIKIGAHDIIKLLIDNGVDTSI----L--P-----------------------------IPC  101 (434)
T ss_pred             ------------CCHHHHHHHcCCHHHHHHHHHCCCCCCc----c--h-----------------------------hcc
Confidence                        4455566888888888888887754211    0  0                             111


Q ss_pred             CChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCC
Q psy2356         165 DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK  244 (529)
Q Consensus       165 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~  244 (529)
                      ...++++.++                          +.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus       102 ~~~~~i~~ll--------------------------~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~  155 (434)
T PHA02874        102 IEKDMIKTIL--------------------------DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD  155 (434)
T ss_pred             CCHHHHHHHH--------------------------HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC
Confidence            2334455555                          45556677788899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCC
Q psy2356         245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY  324 (529)
Q Consensus       245 ~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  324 (529)
                      .|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..+.
T Consensus       156 ~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        156 NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999888899999999887654


Q ss_pred             hhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcC-CHHHHHH
Q psy2356         325 ISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQED-RVGVAEL  403 (529)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~  403 (529)
                       +.+++|+.  +.                                       +.+..+..|.||||+|+..+ +.+++++
T Consensus       236 -~~i~~Ll~--~~---------------------------------------~in~~d~~G~TpLh~A~~~~~~~~iv~~  273 (434)
T PHA02874        236 -SAIELLIN--NA---------------------------------------SINDQDIDGSTPLHHAINPPCDIDIIDI  273 (434)
T ss_pred             -HHHHHHHc--CC---------------------------------------CCCCcCCCCCCHHHHHHhcCCcHHHHHH
Confidence             34444431  11                                       22445667888888888765 5667666


Q ss_pred             HHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcC-cHHHHHHHHhCCCCCcchhhcC-CCHHHHHHHhC
Q psy2356         404 LLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEG-HADMSAMLLEHGADVSHAAKEG-HTALSIAQKLG  481 (529)
Q Consensus       404 Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~  481 (529)
                      |+++                   |+|++.++..|.|||++|++.+ ..++++.|+.+++.+...+..+ .+++..+...+
T Consensus       274 Ll~~-------------------gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~  334 (434)
T PHA02874        274 LLYH-------------------KADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKD  334 (434)
T ss_pred             HHHC-------------------cCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhc
Confidence            6665                   6677888899999999999987 6789999999988776555444 56677777777


Q ss_pred             CchHHHHhhcccchhh
Q psy2356         482 YISVEESLKGVTETLI  497 (529)
Q Consensus       482 ~~~~~~~L~~~~~~~~  497 (529)
                      +.++.+++.+....+.
T Consensus       335 ~~~~~~~~~~c~~ei~  350 (434)
T PHA02874        335 NKEFSDFIKECNEEIE  350 (434)
T ss_pred             cchHHHHHHHHHHHHH
Confidence            7777777777666554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.7e-43  Score=346.61  Aligned_cols=372  Identities=17%  Similarity=0.182  Sum_probs=277.6

Q ss_pred             HHcCChhHHHHHHHCC-CCCCCC-CCCCCchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC-
Q psy2356          45 SKDGHLHVVTELLSRG-ANVDSA-TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR-  121 (529)
Q Consensus        45 ~~~g~~~iv~~Ll~~g-a~~~~~-~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~-  121 (529)
                      .+.++.++|++|+++| ++++.. +..|.||||+|+                        +..+++.+++++|+++|++ 
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~------------------------~n~~~~~eIVklLLe~GADV  205 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYL------------------------GNMYVDIDILEWLCNNGVNV  205 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHH------------------------HhccCCHHHHHHHHHcCCCC
Confidence            3568999999999999 999987 777777777542                        1335688999999999876 


Q ss_pred             ---CCCCCcHHHHHHHcCc--HHHHHHHHhcCCC----CCCCcCHHHHHh---hCCChHHHHHHHhccCCCCCCcccccc
Q psy2356         122 ---GKDGFTPLAVAMQQGH--DKVVAVLLENDTR----GKVRLPALHIAA---KKDDTKAAKLLLEVSCTVDPASVLSST  189 (529)
Q Consensus       122 ---~~~~~~~l~~A~~~~~--~~~v~~Ll~~~~~----~~~~~~~l~~a~---~~~~~~~~~~ll~~~~~~~~~~~~~~~  189 (529)
                         +..|.||||+|+..|+  .+++++|++.+++    +..+.|||+.|+   ..++.++++.+++.+            
T Consensus       206 N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~------------  273 (764)
T PHA02716        206 NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESL------------  273 (764)
T ss_pred             CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhc------------
Confidence               6789999999999995  4899999998765    445778998875   467788888887521            


Q ss_pred             cCCchhhHHHHhCCCCCCcCCCCCCCHHH---HHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHH--cCCHHHHHH
Q psy2356         190 TGNAATGGYLIKNEHNPDVTSKSGFTPLH---IASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASF--MGCMNIVIY  264 (529)
Q Consensus       190 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~---~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~--~~~~~~v~~  264 (529)
                                 ..    +.. .....+++   .|+..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++++
T Consensus       274 -----------d~----n~~-~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVkl  337 (764)
T PHA02716        274 -----------DG----NKV-KNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKL  337 (764)
T ss_pred             -----------cc----ccc-ccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHH
Confidence                       11    100 11112333   4778899999999999999999999999999998764  457899999


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHH--------------cCCHHHHHHHHHCCCCcccccccCCcHHHH----HHHcCChh
Q psy2356         265 LLQNDANPDIPTVRGETPLHLAAR--------------ANQTDIIRILLRNGAQVDARAREGHTALSI----AQKLGYIS  326 (529)
Q Consensus       265 Ll~~g~~~~~~~~~~~t~l~~a~~--------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~----a~~~~~~~  326 (529)
                      |++.|++++.+|..|.||||+|+.              .++.+++++|+++|++++.++..|.||||.    |...++.+
T Consensus       338 LLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~d  417 (764)
T PHA02716        338 LHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYD  417 (764)
T ss_pred             HHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHH
Confidence            999999999999999999998765              367899999999999999999999999983    23456788


Q ss_pred             HHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy2356         327 VEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLK  406 (529)
Q Consensus       327 ~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  406 (529)
                      ++++|++...... ..        +        +..+.+        .    ...+ ....++|.++..++.+...++..
T Consensus       418 IvklLis~~~~~~-~~--------~--------~~~q~l--------l----~~~d-~~~~~lhh~~a~~~~~~~~~~~~  467 (764)
T PHA02716        418 IIDCLISDKVLNM-VK--------H--------RILQDL--------L----IRVD-DTPCIIHHIIAKYNIPTDLYTDE  467 (764)
T ss_pred             HHHHHHhCcchhh-hh--------h--------hhhhhh--------h----hccC-cchhhHHHHHHhcCcchhhhhhh
Confidence            8888865331100 00        0        001101        0    0111 12233677777777776666655


Q ss_pred             cCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcH-----HHHHHHHhCCCCCcchhhcCCCHHHHHHHhC
Q psy2356         407 NNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA-----DMSAMLLEHGADVSHAAKEGHTALSIAQKLG  481 (529)
Q Consensus       407 ~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~-----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  481 (529)
                      ...- +.....++...++..+.++|.++..|+||||+|+..|+.     +++++|+++|++++.+|..|+||||+|++.|
T Consensus       468 ~~~~-~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        468 YEPY-DSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             hhhc-cccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Confidence            4321 111233555666677889999999999999999999876     4569999999999999999999999999999


Q ss_pred             Cc-----hHHHHhhcccchhhhc
Q psy2356         482 YI-----SVEESLKGVTETLIIA  499 (529)
Q Consensus       482 ~~-----~~~~~L~~~~~~~~~~  499 (529)
                      +.     ++|+.|++.++++...
T Consensus       547 ~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        547 RLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             CccccHHHHHHHHHhcCCCcchH
Confidence            87     9999999998876644

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.2e-43  Score=333.18  Aligned_cols=261  Identities=17%  Similarity=0.174  Sum_probs=222.9

Q ss_pred             CCCCCCcCCCCCCCHHHHHHHcC--CHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy2356         202 NEHNPDVTSKSGFTPLHIASHYG--NEGVANILLDKRADVNF-SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR  278 (529)
Q Consensus       202 ~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~~Ll~~g~~~~~-~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~  278 (529)
                      .|++++.++..|.||||+|+..+  ..+++++|+++|++++. .+..|.|||+ |+..++.+++++|++.|++++..+..
T Consensus        94 ~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~  172 (446)
T PHA02946         94 HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKF  172 (446)
T ss_pred             CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCC
Confidence            34556778889999999998876  48899999999999985 6888999997 66779999999999999999999999


Q ss_pred             CCcHHHHHHHcC--CHHHHHHHHHCCCCcccccccCCcHHHHHHHcC--ChhHHHHhhhhcccccccCCCCCCcHHHHHH
Q psy2356         279 GETPLHLAARAN--QTDIIRILLRNGAQVDARAREGHTALSIAQKLG--YISVEESLGAAERSQLKKRGREGHTALSIAQ  354 (529)
Q Consensus       279 ~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  354 (529)
                      |+||||.|+..+  +.+++++|+++|++++.+|..|.||||+|+..+  +.++++.|+.  +.+++..+..|.||||+|+
T Consensus       173 G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~  250 (446)
T PHA02946        173 GKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLI  250 (446)
T ss_pred             CCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHH
Confidence            999999988754  578999999999999999999999999999986  7889999874  5889999999999999999


Q ss_pred             HhCc-hhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCc
Q psy2356         355 KLGY-ISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAE  433 (529)
Q Consensus       355 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~  433 (529)
                      ..++ .++++.+        ...+..   ..+. +++.|+..+..++++++..+|.+                       
T Consensus       251 ~~~~~~~~~~~L--------l~~g~~---~~~~-~~~~a~~~~~~~~~e~l~~~g~~-----------------------  295 (446)
T PHA02946        251 KTLSPAHLINKL--------LSTSNV---ITDQ-TVNICIFYDRDDVLEIINDKGKQ-----------------------  295 (446)
T ss_pred             HhCChHHHHHHH--------HhCCCC---CCCc-HHHHHHHcCchHHHHHHHHcCcc-----------------------
Confidence            9887 4677766        333221   1233 48899999999999988876532                       


Q ss_pred             ccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhccCCCCccccch
Q psy2356         434 SVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVA  510 (529)
Q Consensus       434 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  510 (529)
                        .|.||||+|+.+|+.++|++|+++|+       .|.||||+|+..++.+++++|+.++.++... ..|.+.....
T Consensus       296 --~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a  362 (446)
T PHA02946        296 --YDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSEC  362 (446)
T ss_pred             --cCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHH
Confidence              37899999999999999999999985       3789999999999999999999999998874 5788776655

>KOG0510|consensus

Probab=100.00  E-value=9.3e-44  Score=332.93  Aligned_cols=378  Identities=26%  Similarity=0.361  Sum_probs=271.7

Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcc-cccccccccc
Q psy2356          15 GHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL-VPVWLGDFKQ   93 (529)
Q Consensus        15 g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~-~~~~~~~~~~   93 (529)
                      +....-+.++....++......-.++.+++...   |...++++..+.+...+..|.+++|.++..+.+ .........+
T Consensus         9 ~~~~~qea~~~~~~~~~~~~~d~~~~~~~~~~d---D~~tli~~kns~~~~~~~~gd~~~~~~~~~~y~~~~~~~~~a~D   85 (929)
T KOG0510|consen    9 NDPQAQEALLLAKQDIRQPVADLDSQALADTLD---DRHTLILEKNSSTPGKRAFGDTELHHASARNYILSKLAISYAKD   85 (929)
T ss_pred             CCcHHHHHhhhhhhhhhhhhHHHhHHHHHhhHH---HHHHHHHHhccccchhhhhchhHHHHHHhhcchhhhhhhhhhhh
Confidence            333333344443344444444555566665544   778888888888888888888888888877755 3333445667


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCC----CCCCcCHHHHHhhCC
Q psy2356          94 GDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTR----GKVRLPALHIAAKKD  165 (529)
Q Consensus        94 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~a~~~~  165 (529)
                      ..+.+|||+|+..+..+.+++|++.|++    +..+.+|+|+|+..|+.+.++.|++.+.+    +..+.||||.|+..+
T Consensus        86 ~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~  165 (929)
T KOG0510|consen   86 SADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKN  165 (929)
T ss_pred             cccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcC
Confidence            7888899999999999999999998877    66778888888888888888888877644    444567777777777


Q ss_pred             ChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh-----CCCCCc
Q psy2356         166 DTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD-----KRADVN  240 (529)
Q Consensus       166 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-----~g~~~~  240 (529)
                      +.|..+.|++.                          +.++...+..+++|+|.|+..|..++.+..+.     .+..++
T Consensus       166 ~~E~~k~Li~~--------------------------~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in  219 (929)
T KOG0510|consen  166 KVEAKKELINK--------------------------GADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN  219 (929)
T ss_pred             hHHHHHHHHhc--------------------------CCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc
Confidence            77755666643                          33444455566777777777777777777766     455666


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---------------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc
Q psy2356         241 FSAKSGLTPLHVASFMGCMNIVIYLLQNDANP---------------DIPTVRGETPLHLAARANQTDIIRILLRNGAQV  305 (529)
Q Consensus       241 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~---------------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  305 (529)
                      ..+..+.+|||.|+..|+++.++.+++.|...               +..|.+|.||||+|++.|+.+.++.|+.+|+++
T Consensus       220 ~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I  299 (929)
T KOG0510|consen  220 FDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI  299 (929)
T ss_pred             cccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc
Confidence            66777777777777777777777777665432               345666677777777777777777777777777


Q ss_pred             ccccccCCcHHHHHHHcCChhHHHHhhh-hcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCC
Q psy2356         306 DARAREGHTALSIAQKLGYISVEESLGA-AERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN  384 (529)
Q Consensus       306 ~~~~~~g~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  384 (529)
                      +.++.++.||||.|+.+|.++.++.|++ .....                                       .+..|.-
T Consensus       300 ~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rl---------------------------------------lne~D~~  340 (929)
T KOG0510|consen  300 NSKNKDEESPLHFAAIYGRINTVERLLQESDTRL---------------------------------------LNESDLH  340 (929)
T ss_pred             cccCCCCCCchHHHHHcccHHHHHHHHhCcCccc---------------------------------------ccccccc
Confidence            7777777777777777777766666654 11111                                       1455667


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCc
Q psy2356         385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS  464 (529)
Q Consensus       385 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  464 (529)
                      |+||||.|+..|+.++++.|++.|+....                ....|.+|.||||.|+.+|+..+|++|+.+|++++
T Consensus       341 g~tpLHlaa~~gH~~v~qlLl~~GA~~~~----------------~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~  404 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRVVQLLLNKGALFLN----------------MSEADSDGNTALHLAAKYGNTSAVQKLISHGADIG  404 (929)
T ss_pred             CCCchhhhhhcCHHHHHHHHHhcChhhhc----------------ccccccCCchhhhHHHHhccHHHHHHHHHcCCcee
Confidence            88999999999999999999998875432                11348889999999999999999999999999999


Q ss_pred             chhhcCCCHHHH
Q psy2356         465 HAAKEGHTALSI  476 (529)
Q Consensus       465 ~~~~~g~t~l~~  476 (529)
                      .+|+.|.|++++
T Consensus       405 ~~n~~g~SA~~~  416 (929)
T KOG0510|consen  405 VKNKKGKSAFDT  416 (929)
T ss_pred             eccccccccccc
Confidence            999999999985

>KOG0510|consensus

Probab=100.00  E-value=2.2e-42  Score=323.81  Aligned_cols=348  Identities=26%  Similarity=0.349  Sum_probs=302.3

Q ss_pred             HHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcc
Q psy2356         110 KVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASV  185 (529)
Q Consensus       110 ~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  185 (529)
                      |....+++..+.    +..|.+++|.++..+..  ..-+....+.+..+.+++|+|+.....+.++.|++          
T Consensus        42 D~~tli~~kns~~~~~~~~gd~~~~~~~~~~y~--~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls----------  109 (929)
T KOG0510|consen   42 DRHTLILEKNSSTPGKRAFGDTELHHASARNYI--LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLS----------  109 (929)
T ss_pred             HHHHHHHHhccccchhhhhchhHHHHHHhhcch--hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHh----------
Confidence            566777775444    66788999999988755  22222334556677899999999999999999994          


Q ss_pred             cccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q psy2356         186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL  265 (529)
Q Consensus       186 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~L  265 (529)
                                      .|++++..+..+.+|+|+|+..+..+.++.|+++|++++..|.++.||||.|+..++.|..+.|
T Consensus       110 ----------------~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~L  173 (929)
T KOG0510|consen  110 ----------------YGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKEL  173 (929)
T ss_pred             ----------------cCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHH
Confidence                            5566677888899999999999999999999999999999999999999999999999988999


Q ss_pred             HHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-----CCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcc----
Q psy2356         266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLR-----NGAQVDARAREGHTALSIAQKLGYISVEESLGAAER----  336 (529)
Q Consensus       266 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-----~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~----  336 (529)
                      ++.|+++.-.+.+|..|+|.|++.|..++.+.++.     ++..+|..+..+.+|||.|+..|+.++++.+++...    
T Consensus       174 i~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~  253 (929)
T KOG0510|consen  174 INKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIAD  253 (929)
T ss_pred             HhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccch
Confidence            99999999999999999999999999999999998     677899999999999999999999999999976553    


Q ss_pred             ----------cccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q psy2356         337 ----------SQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLK  406 (529)
Q Consensus       337 ----------~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  406 (529)
                                ..++..|.+|.||||+|++.|..+.++.|      +....+.+.++..+.||||.|+..|+.+.++-||+
T Consensus       254 ~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~L------l~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  254 VQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNL------LGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             hhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHH------HHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence                      33567789999999999999999999988      22333447778889999999999999999999998


Q ss_pred             -cCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCc---chhhcCCCHHHHHHHhCC
Q psy2356         407 -NNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS---HAAKEGHTALSIAQKLGY  482 (529)
Q Consensus       407 -~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~  482 (529)
                       .|.                  ...|..|..|+||||.|+++|+..++++|++.|+...   ..|+.|.||||+|+++|+
T Consensus       328 ~~~~------------------rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~  389 (929)
T KOG0510|consen  328 ESDT------------------RLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGN  389 (929)
T ss_pred             CcCc------------------cccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhcc
Confidence             322                  3567888899999999999999999999999999877   459999999999999999


Q ss_pred             chHHHHhhcccchhhhccCCCCccccc
Q psy2356         483 ISVEESLKGVTETLIIAKGDGEKHKVV  509 (529)
Q Consensus       483 ~~~~~~L~~~~~~~~~~~~~~~~~~~~  509 (529)
                      ..+|++|+++++++-..+..++++...
T Consensus       390 ~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  390 TSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHHHHcCCceeeccccccccccc
Confidence            999999999999997777777777663

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-41  Score=325.68  Aligned_cols=306  Identities=25%  Similarity=0.359  Sum_probs=241.5

Q ss_pred             HHHHHHHcCChhHHHHHHHCC-CCCCCCCCCCCchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhc
Q psy2356          40 ALHLASKDGHLHVVTELLSRG-ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN  118 (529)
Q Consensus        40 ~L~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~  118 (529)
                      .|+.|+..|+.++++.|++.+ ..++..+.                          .+.|||+.|+..|+.++|++|++.
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~--------------------------~~~tpL~~A~~~g~~~iv~~Ll~~   57 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCINISVD--------------------------ETTTPLIDAIRSGDAKIVELFIKH   57 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCcCC--------------------------CCCCHHHHHHHcCCHHHHHHHHHC
Confidence            677888888888888888754 33444333                          345566677888888888888887


Q ss_pred             CCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCch
Q psy2356         119 DTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAA  194 (529)
Q Consensus       119 ~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  194 (529)
                      |++    +..+.|||+.|+..|+.+++++|++++.+                             ..             
T Consensus        58 Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~-----------------------------~~-------------   95 (434)
T PHA02874         58 GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD-----------------------------TS-------------   95 (434)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------------------------CC-------------
Confidence            765    34556677777666666666666654332                             10             


Q ss_pred             hhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy2356         195 TGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI  274 (529)
Q Consensus       195 ~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~  274 (529)
                                           .  .+......+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.
T Consensus        96 ---------------------~--~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~  152 (434)
T PHA02874         96 ---------------------I--LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI  152 (434)
T ss_pred             ---------------------c--chhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC
Confidence                                 0  11223457899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHH
Q psy2356         275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ  354 (529)
Q Consensus       275 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  354 (529)
                      .+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++... ++..             
T Consensus       153 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~-~i~~-------------  218 (434)
T PHA02874        153 EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN-HIMN-------------  218 (434)
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCcC-------------
Confidence            99999999999999999999999999999999999999999999999999999999975432 2233             


Q ss_pred             HhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcc
Q psy2356         355 KLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES  434 (529)
Q Consensus       355 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~  434 (529)
                                                .+..|.||||.|+..+. +.+++|+                    .|++++.++
T Consensus       219 --------------------------~~~~g~TpL~~A~~~~~-~~i~~Ll--------------------~~~~in~~d  251 (434)
T PHA02874        219 --------------------------KCKNGFTPLHNAIIHNR-SAIELLI--------------------NNASINDQD  251 (434)
T ss_pred             --------------------------CCCCCCCHHHHHHHCCh-HHHHHHH--------------------cCCCCCCcC
Confidence                                      33456677777766543 3444443                    367788999


Q ss_pred             cCCCCHHHHHHHcC-cHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhC-CchHHHHhhcccchhh
Q psy2356         435 VAGFTPLHLSASEG-HADMSAMLLEHGADVSHAAKEGHTALSIAQKLG-YISVEESLKGVTETLI  497 (529)
Q Consensus       435 ~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~L~~~~~~~~  497 (529)
                      ..|+||||+|+..+ +.+++++|+++|++++.+|..|.|||++|++.+ ..++++.|++......
T Consensus       252 ~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~  316 (434)
T PHA02874        252 IDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIK  316 (434)
T ss_pred             CCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchh
Confidence            99999999999876 789999999999999999999999999999987 7788999998776543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-41  Score=333.15  Aligned_cols=294  Identities=28%  Similarity=0.346  Sum_probs=226.1

Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccc
Q psy2356          13 RAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFK   92 (529)
Q Consensus        13 ~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~   92 (529)
                      .....++++++++.+...+..+..+.||||+|+..|+.++|++|+++|++++..+..+.||+|++..             
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~-------------   77 (480)
T PHA03100         11 RIIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSN-------------   77 (480)
T ss_pred             hHHHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHH-------------
Confidence            3456688999998876667788899999999999999999999999999998877666666665321             


Q ss_pred             cCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHH
Q psy2356          93 QGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKL  172 (529)
Q Consensus        93 ~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~  172 (529)
                                   ..                        |+..++.+++++|++                          
T Consensus        78 -------------~~------------------------a~~~~~~~iv~~Ll~--------------------------   94 (480)
T PHA03100         78 -------------IK------------------------YNLTDVKEIVKLLLE--------------------------   94 (480)
T ss_pred             -------------HH------------------------HHhhchHHHHHHHHH--------------------------
Confidence                         00                        444444444444432                          


Q ss_pred             HHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHH--HcCCHHHHHHHHhCCCCCcccCCCCCcHH
Q psy2356         173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIAS--HYGNEGVANILLDKRADVNFSAKSGLTPL  250 (529)
Q Consensus       173 ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l  250 (529)
                                                   .|++++..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.|||
T Consensus        95 -----------------------------~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L  145 (480)
T PHA03100         95 -----------------------------YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL  145 (480)
T ss_pred             -----------------------------CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHH
Confidence                                         22334456667899999999  99999999999999999999999999999


Q ss_pred             HHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHH
Q psy2356         251 HVASFMG--CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE  328 (529)
Q Consensus       251 ~~a~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  328 (529)
                      |.|+..+  +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.++.+.          
T Consensus       146 ~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~----------  215 (480)
T PHA03100        146 HLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF----------  215 (480)
T ss_pred             HHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH----------
Confidence            9999999  9999999999999999999999999999999999999999999999999888888777665          


Q ss_pred             HHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCC--HHHHHHHHh
Q psy2356         329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR--VGVAELLLK  406 (529)
Q Consensus       329 ~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~~~~Ll~  406 (529)
                                                                               .||||.|+..|+  .+++++|++
T Consensus       216 ---------------------------------------------------------~t~l~~a~~~~~~~~~iv~~Ll~  238 (480)
T PHA03100        216 ---------------------------------------------------------ETPLHIAACYNEITLEVVNYLLS  238 (480)
T ss_pred             ---------------------------------------------------------HhHHHHHHHhCcCcHHHHHHHHH
Confidence                                                                     256666666666  555555555


Q ss_pred             cCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHH
Q psy2356         407 NNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVE  486 (529)
Q Consensus       407 ~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  486 (529)
                      +                   |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.++.+++
T Consensus       239 ~-------------------g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv  299 (480)
T PHA03100        239 Y-------------------GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIF  299 (480)
T ss_pred             c-------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHH
Confidence            4                   344455666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhhcccchhh
Q psy2356         487 ESLKGVTETLI  497 (529)
Q Consensus       487 ~~L~~~~~~~~  497 (529)
                      ++|++.++++.
T Consensus       300 ~~Ll~~g~~i~  310 (480)
T PHA03100        300 KLLLNNGPSIK  310 (480)
T ss_pred             HHHHhcCCCHH
Confidence            66666666554

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.4e-41  Score=331.17  Aligned_cols=292  Identities=27%  Similarity=0.293  Sum_probs=224.9

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC---ChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcccc
Q psy2356           9 LRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDG---HLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVP   85 (529)
Q Consensus         9 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~   85 (529)
                      ..|+..+++++|++|++.|++++..+..|.||||+|+..|   +.+++++|++.|++++.++..|.||+|+|        
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A--------   90 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLY--------   90 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHH--------
Confidence            5678899999999999999999999999999999999998   99999999999999998776655554443        


Q ss_pred             ccccccccCCCCCHHHHHHHcCc-HHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhC
Q psy2356          86 VWLGDFKQGDGFTPLAVAMQQGH-DKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKK  164 (529)
Q Consensus        86 ~~~~~~~~~~~~~~l~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~  164 (529)
                                        +..|+ .+++++|+                                                
T Consensus        91 ------------------~~~~~~~~iv~lLl------------------------------------------------  104 (471)
T PHA03095         91 ------------------LYNATTLDVIKLLI------------------------------------------------  104 (471)
T ss_pred             ------------------HHcCCcHHHHHHHH------------------------------------------------
Confidence                              44543 33333333                                                


Q ss_pred             CChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHH--HcCCHHHHHHHHhCCCCCccc
Q psy2356         165 DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIAS--HYGNEGVANILLDKRADVNFS  242 (529)
Q Consensus       165 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~v~~Ll~~g~~~~~~  242 (529)
                                                          +.|.+++.++..|.||||+|+  ..++.+++++|++.|++++..
T Consensus       105 ------------------------------------~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~  148 (471)
T PHA03095        105 ------------------------------------KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL  148 (471)
T ss_pred             ------------------------------------HcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCcc
Confidence                                                233445556667888888888  455788888888888888888


Q ss_pred             CCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCcccccccCCcHHHH
Q psy2356         243 AKSGLTPLHVASFMG--CMNIVIYLLQNDANPDIPTVRGETPLHLAARA--NQTDIIRILLRNGAQVDARAREGHTALSI  318 (529)
Q Consensus       243 ~~~~~~~l~~a~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  318 (529)
                      +..|.||||.|+..+  +.+++++|++.|++++..+..|.||||+++..  +..++++.|+++|++++.++..|.||||+
T Consensus       149 d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~  228 (471)
T PHA03095        149 DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHS  228 (471)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            888888888887765  57888888888888888888888888888764  67788888888888888888888888888


Q ss_pred             HHHcCCh--hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcC
Q psy2356         319 AQKLGYI--SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQED  396 (529)
Q Consensus       319 a~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  396 (529)
                      |+..|+.  .+++.++..                                        ..+.+..+..|.||||+|+..|
T Consensus       229 Aa~~~~~~~~~v~~ll~~----------------------------------------g~din~~d~~g~TpLh~A~~~~  268 (471)
T PHA03095        229 MATGSSCKRSLVLPLLIA----------------------------------------GISINARNRYGQTPLHYAAVFN  268 (471)
T ss_pred             HHhcCCchHHHHHHHHHc----------------------------------------CCCCCCcCCCCCCHHHHHHHcC
Confidence            8877764  233333221                                        1122445566778888888888


Q ss_pred             CHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhc
Q psy2356         397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKE  469 (529)
Q Consensus       397 ~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  469 (529)
                      +.+++++|+++                   |+|++.++..|+|||++|+.+|+.+++++|++++++++..+..
T Consensus       269 ~~~~v~~LL~~-------------------gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~~~  322 (471)
T PHA03095        269 NPRACRRLIAL-------------------GADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAAT  322 (471)
T ss_pred             CHHHHHHHHHc-------------------CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHHHH
Confidence            88777777765                   5566788888999999999999999999999988887655443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-40  Score=324.59  Aligned_cols=276  Identities=25%  Similarity=0.313  Sum_probs=242.2

Q ss_pred             HHHhCCCCCCcCCCCCCCHHHHHHHcC---CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCCC
Q psy2356         198 YLIKNEHNPDVTSKSGFTPLHIASHYG---NEGVANILLDKRADVNFSAKSGLTPLHVASFMG-CMNIVIYLLQNDANPD  273 (529)
Q Consensus       198 ~l~~~~~~~~~~~~~~~t~l~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~-~~~~v~~Ll~~g~~~~  273 (529)
                      ++++.|.+++..+..|.||||+|+..+   +.+++++|++.|++++..+..|.||||+|+..+ ..+++++|++.|++++
T Consensus        32 ~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in  111 (471)
T PHA03095         32 RLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVN  111 (471)
T ss_pred             HHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC
Confidence            333566677788889999999999999   999999999999999999999999999999999 5999999999999999


Q ss_pred             CCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcC--ChhHHHHhhhhcccccccCCCCCCcH
Q psy2356         274 IPTVRGETPLHLAA--RANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG--YISVEESLGAAERSQLKKRGREGHTA  349 (529)
Q Consensus       274 ~~~~~~~t~l~~a~--~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (529)
                      ..+..|.||||+|+  ..++.+++++|+++|++++..+..|.||+|+|+..+  +.+++++|++.. .++...+..|.||
T Consensus       112 ~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g-~~~~~~d~~g~t~  190 (471)
T PHA03095        112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG-ADVYAVDDRFRSL  190 (471)
T ss_pred             CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCCcccCCCCCCH
Confidence            99999999999999  566899999999999999999999999999998876  678999998765 4445558999999


Q ss_pred             HHHHHHh--CchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcC
Q psy2356         350 LSIAQKL--GYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYG  427 (529)
Q Consensus       350 l~~a~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g  427 (529)
                      ||+++..  +..++++.+..      ...+.+..+..|.||||+|+..|+..                 ..+++.|++.|
T Consensus       191 Lh~~~~~~~~~~~i~~~Ll~------~g~~~~~~d~~g~tpLh~Aa~~~~~~-----------------~~~v~~ll~~g  247 (471)
T PHA03095        191 LHHHLQSFKPRARIVRELIR------AGCDPAATDMLGNTPLHSMATGSSCK-----------------RSLVLPLLIAG  247 (471)
T ss_pred             HHHHHHHCCCcHHHHHHHHH------cCCCCcccCCCCCCHHHHHHhcCCch-----------------HHHHHHHHHcC
Confidence            9999976  56677777722      33455788999999999999988642                 12344455567


Q ss_pred             CCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         428 AKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       428 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      +++|.++..|+||||+|+..|+.++|++|+++|++++..|..|.|||++|+..|+.++++.|++.++++.
T Consensus       248 ~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        248 ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            8889999999999999999999999999999999999999999999999999999999999999988774

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-39  Score=316.54  Aligned_cols=289  Identities=21%  Similarity=0.231  Sum_probs=199.8

Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHc--CChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccc
Q psy2356          13 RAGHLDKIIEHLKNNVDINTANANGLNALHLASKD--GHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGD   90 (529)
Q Consensus        13 ~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   90 (529)
                      ...+.++|++|+++|+++|.. ..|.||||.++..  ++.++|++|+++||+++..+ .+.||||+|             
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a-------------   76 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAV-------------   76 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHH-------------
Confidence            357899999999999999988 5688998765543  47899999999999998654 234444433             


Q ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHH
Q psy2356          91 FKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA  170 (529)
Q Consensus        91 ~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~  170 (529)
                                   +.++...                       ..+..+++++|                          
T Consensus        77 -------------~~~~~~~-----------------------~~~~~~iv~~L--------------------------   94 (494)
T PHA02989         77 -------------LRNREIT-----------------------SNKIKKIVKLL--------------------------   94 (494)
T ss_pred             -------------HhccCcc-----------------------hhhHHHHHHHH--------------------------
Confidence                         3222110                       01223333333                          


Q ss_pred             HHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCC-cccCCCC
Q psy2356         171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHY---GNEGVANILLDKRADV-NFSAKSG  246 (529)
Q Consensus       171 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~v~~Ll~~g~~~-~~~~~~~  246 (529)
                         +                          +.|++++.++..|.||||.|+..   ++.+++++|+++|+++ +..+..|
T Consensus        95 ---l--------------------------~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g  145 (494)
T PHA02989         95 ---L--------------------------KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRG  145 (494)
T ss_pred             ---H--------------------------HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCC
Confidence               3                          34455667788899999988765   6789999999999999 7899999


Q ss_pred             CcHHHHHHHc--CCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcC----CHHHHHHHHHCCCCcccccccCCcHHHHH
Q psy2356         247 LTPLHVASFM--GCMNIVIYLLQNDANPDI-PTVRGETPLHLAARAN----QTDIIRILLRNGAQVDARAREGHTALSIA  319 (529)
Q Consensus       247 ~~~l~~a~~~--~~~~~v~~Ll~~g~~~~~-~~~~~~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  319 (529)
                      .||||+|+..  ++.+++++|+++|++++. .+..|.||||.|++.+    +.+++++|+++|++++..+..+.++++.+
T Consensus       146 ~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~  225 (494)
T PHA02989        146 YNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESF  225 (494)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHH
Confidence            9999998754  688999999999999988 6778999999998764    89999999999999998888888888876


Q ss_pred             HHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHH
Q psy2356         320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG  399 (529)
Q Consensus       320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  399 (529)
                      +..+.                            +...+..++++++.       ...+.+.++..|.||||+|+..|+.+
T Consensus       226 ~~~~~----------------------------~~~~~~~~il~~l~-------~~advn~~d~~G~TpL~~Aa~~~~~~  270 (494)
T PHA02989        226 LDNNK----------------------------ILSKKEFKVLNFIL-------KYIKINKKDKKGFNPLLISAKVDNYE  270 (494)
T ss_pred             HHhch----------------------------hhcccchHHHHHHH-------hCCCCCCCCCCCCCHHHHHHHhcCHH
Confidence            54321                            00011112222220       11222444555666666666666666


Q ss_pred             HHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCC
Q psy2356         400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA  461 (529)
Q Consensus       400 ~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  461 (529)
                      ++++|+++                   |+|++.++..|+||||+|+.+|+.++|+.|++++.
T Consensus       271 ~v~~LL~~-------------------Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        271 AFNYLLKL-------------------GDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             HHHHHHHc-------------------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            55555554                   34455666666666666666666666666666544

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-38  Score=309.40  Aligned_cols=251  Identities=24%  Similarity=0.341  Sum_probs=146.9

Q ss_pred             HHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcc
Q psy2356           8 FLRAARAGHLDKIIEHLKN----NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL   83 (529)
Q Consensus         8 L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~   83 (529)
                      |+.+....+.+-+...++.    +...+..+..+.||||+|+..|+.++|++|++.|++++.++..|.|           
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~T-----------   72 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLT-----------   72 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-----------
Confidence            4555555665334444432    2122344557889999999999999999999999999877666555           


Q ss_pred             ccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC--CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHH
Q psy2356          84 VPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR--GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIA  161 (529)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a  161 (529)
                                     |||+||..|+.+++++|++.+..  ...+.++++.|+..++.+++++|+..+.............
T Consensus        73 ---------------pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~  137 (477)
T PHA02878         73 ---------------PLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYID  137 (477)
T ss_pred             ---------------HHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHh
Confidence                           45566788888999999887544  2455678888888888888888887643322211111000


Q ss_pred             --hhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy2356         162 --AKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKS-GFTPLHIASHYGNEGVANILLDKRAD  238 (529)
Q Consensus       162 --~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~A~~~~~~~~v~~Ll~~g~~  238 (529)
                        ...+..                        ..++++++++.|.+++..+.. |.||||+|+..|+.+++++|++.|++
T Consensus       138 ~~~~~~~~------------------------~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad  193 (477)
T PHA02878        138 KKSKDDII------------------------EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN  193 (477)
T ss_pred             hccchhhH------------------------HHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence              000000                        011222333444444444444 55555555555555555555555555


Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCcccc
Q psy2356         239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA-NQTDIIRILLRNGAQVDAR  308 (529)
Q Consensus       239 ~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~  308 (529)
                      ++..+..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++..
T Consensus       194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~  264 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAK  264 (477)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCcc
Confidence            555555555555555555555555555555555555555555555555543 4555555555555555443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-38  Score=313.41  Aligned_cols=254  Identities=30%  Similarity=0.443  Sum_probs=183.7

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHH-----HHHcCChhHHHHHHHCCCCCCCCCCCCCchHHH
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHL-----ASKDGHLHVVTELLSRGANVDSATKKGNTALHI   76 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~-----A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~   76 (529)
                      .+|.||||.|+..|+.++|++|++.|++++..+..+.||||+     |+..|+.+++++|++.|++++..+..|.||   
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tp---  109 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITP---  109 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCch---
Confidence            578999999999999999999999999999999999999999     999999999999999999998777665555   


Q ss_pred             HhhcCccccccccccccCCCCCHHHHHH--HcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcC--cHHHHHHHHhcC
Q psy2356          77 ASLGEFLVPVWLGDFKQGDGFTPLAVAM--QQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQG--HDKVVAVLLEND  148 (529)
Q Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~l~~A~--~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~--~~~~v~~Ll~~~  148 (529)
                                             |++|+  ..|+.+++++|++.|++    +..|.||||.|+..|  +.+++++|++++
T Consensus       110 -----------------------L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g  166 (480)
T PHA03100        110 -----------------------LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG  166 (480)
T ss_pred             -----------------------hhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC
Confidence                                   55667  88999999999999876    567888999998888  888888888765


Q ss_pred             CC----CCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCC------CCHHH
Q psy2356         149 TR----GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSG------FTPLH  218 (529)
Q Consensus       149 ~~----~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~t~l~  218 (529)
                      ++    +..+.||||+|+..++.+++++|++.                          |.+++..+..+      .||||
T Consensus       167 ~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~--------------------------ga~~~~~~~~~~~~~~~~t~l~  220 (480)
T PHA03100        167 VDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN--------------------------GADINAGDIETLLFTIFETPLH  220 (480)
T ss_pred             CCcccccCCCCCHHHHHHHhCCHHHHHHHHHc--------------------------CCCccCCCCCCCcHHHHHhHHH
Confidence            43    22345566666666666666655532                          33334444444      55666


Q ss_pred             HHHHcCC--HHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy2356         219 IASHYGN--EGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR  296 (529)
Q Consensus       219 ~A~~~~~--~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  296 (529)
                      .|+..++  .+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|++.++.++++
T Consensus       221 ~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~  300 (480)
T PHA03100        221 IAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFK  300 (480)
T ss_pred             HHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHH
Confidence            6666655  66666666666666655555666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHCCCCccc
Q psy2356         297 ILLRNGAQVDA  307 (529)
Q Consensus       297 ~Ll~~g~~~~~  307 (529)
                      +|+++|++++.
T Consensus       301 ~Ll~~g~~i~~  311 (480)
T PHA03100        301 LLLNNGPSIKT  311 (480)
T ss_pred             HHHhcCCCHHH
Confidence            66666655544

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=303.55  Aligned_cols=276  Identities=21%  Similarity=0.273  Sum_probs=234.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      .|.||||.||+.|+.++|++|+++|++++..|..|+||||+||..|+.+++++|++.+.+...                 
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-----------------   98 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV-----------------   98 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc-----------------
Confidence            578999999999999999999999999999999999999999999999999999998765432                 


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHH--HHc--CcHHHHHHHHhcCCCC----CC-
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVA--MQQ--GHDKVVAVLLENDTRG----KV-  153 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A--~~~--~~~~~v~~Ll~~~~~~----~~-  153 (529)
                                 ..+.++++.|+..++.+++++|+..+.............  ...  ...+++++|++.+++.    .. 
T Consensus        99 -----------~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~  167 (477)
T PHA02878         99 -----------FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHK  167 (477)
T ss_pred             -----------ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCC
Confidence                       123567888999999999999998865433222222111  111  2356999999987653    33 


Q ss_pred             CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356         154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL  233 (529)
Q Consensus       154 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  233 (529)
                      +.||||+|+..++.+++++|++.                          |.+++..+..|.||||.|+..++.+++++|+
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~--------------------------gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll  221 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSY--------------------------GANVNIPDKTNNSPLHHAVKHYNKPIVHILL  221 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHC--------------------------CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            78999999999999999999954                          4556678889999999999999999999999


Q ss_pred             hCCCCCcccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCccccccc
Q psy2356         234 DKRADVNFSAKSGLTPLHVASFM-GCMNIVIYLLQNDANPDIPTV-RGETPLHLAARANQTDIIRILLRNGAQVDARARE  311 (529)
Q Consensus       234 ~~g~~~~~~~~~~~~~l~~a~~~-~~~~~v~~Ll~~g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  311 (529)
                      +.|++++..+..|.||||+|+.. ++.+++++|+++|++++..+. .|.||||.|  .++.+++++|+++|++++..+..
T Consensus       222 ~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~  299 (477)
T PHA02878        222 ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSY  299 (477)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCC
Confidence            99999999999999999999976 789999999999999999876 799999999  57889999999999999999999


Q ss_pred             CCcHHHHHHHcC-ChhHHHHhhhh
Q psy2356         312 GHTALSIAQKLG-YISVEESLGAA  334 (529)
Q Consensus       312 g~t~l~~a~~~~-~~~~~~~l~~~  334 (529)
                      |.||+++|+..+ ..++.+.++..
T Consensus       300 g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        300 KLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             CCCHHHHHHHHcCccchHHHHHHH
Confidence            999999999754 55677776543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-37  Score=275.26  Aligned_cols=220  Identities=18%  Similarity=0.180  Sum_probs=184.9

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356         208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA  287 (529)
Q Consensus       208 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  287 (529)
                      .++..|.||||+|+..|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAV  102 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            467788999999999999999999999998887654  689999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCcccccccCC-cHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhh
Q psy2356         288 RANQTDIIRILLRNGAQVDARAREGH-TALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLK  366 (529)
Q Consensus       288 ~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~  366 (529)
                      ..|+.+++++|+++|++++..+..|+ ||||+|+..|+.+++++|++..+.                             
T Consensus       103 ~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~-----------------------------  153 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-----------------------------  153 (284)
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc-----------------------------
Confidence            99999999999999999988888774 889999999999998888653211                             


Q ss_pred             hhhhHHHHhhcCCCCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCH-HHHH
Q psy2356         367 GVTETLIIAKGDGEKH-KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP-LHLS  444 (529)
Q Consensus       367 ~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~-L~~A  444 (529)
                                   ..+ ..|.||||+|+..|+.+++++|+++|                   ++++.++..|.|| ||+|
T Consensus       154 -------------~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g-------------------Ad~n~~d~~g~t~~L~~A  201 (284)
T PHA02791        154 -------------TFDLAILLSCIHITIKNGHVDMMILLLDYM-------------------TSTNTNNSLLFIPDIKLA  201 (284)
T ss_pred             -------------ccccccCccHHHHHHHcCCHHHHHHHHHCC-------------------CCCCcccCCCCChHHHHH
Confidence                         011 24779999999999999888888875                   4567777778876 9999


Q ss_pred             HHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       445 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      +..|+.++|++|+++|++++..|..| ++|      ++.|++++|++.-.++-
T Consensus       202 a~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~~  247 (284)
T PHA02791        202 IDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEYK  247 (284)
T ss_pred             HHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhhc
Confidence            99999999999999999999988854 554      88899999998776654

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.5e-37  Score=291.53  Aligned_cols=146  Identities=13%  Similarity=0.125  Sum_probs=125.0

Q ss_pred             CchhHHHH-HHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHH-cCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhc
Q psy2356           3 EGHTSFLR-AARAGHLDKIIEHLKNNVDINTANANGLNALHLASK-DGHLHVVTELLSRGANVDSATKKGNTALHIASLG   80 (529)
Q Consensus         3 ~g~t~L~~-A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~-~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~   80 (529)
                      ||.+++|. |...|++|+|++|+++|+++|.++..+.+|+++|+. .++.|++++|++.||+++..+..|.||++.-...
T Consensus        70 ~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~  149 (631)
T PHA02792         70 NDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITR  149 (631)
T ss_pred             CCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccc
Confidence            67777754 566789999999999999999999999999999965 7999999999999999999999999999876643


Q ss_pred             Ccccc----------ccccccccCCCCCHHHHHHHcC-------cHHHHHHHhhcCCC----CCCCCcHHHHHHHcC--c
Q psy2356          81 EFLVP----------VWLGDFKQGDGFTPLAVAMQQG-------HDKVVAVLLENDTR----GKDGFTPLAVAMQQG--H  137 (529)
Q Consensus        81 ~~~~~----------~~~~~~~~~~~~~~l~~A~~~~-------~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~--~  137 (529)
                      .....          -...+..+..|.||||+|+.++       +.++++.|+++|+.    +..|.||||+|+...  .
T Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~  229 (631)
T PHA02792        150 AEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIK  229 (631)
T ss_pred             ccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccch
Confidence            32210          1123577888999999999999       89999999999876    677999999999999  8


Q ss_pred             HHHHHHHHhcC
Q psy2356         138 DKVVAVLLEND  148 (529)
Q Consensus       138 ~~~v~~Ll~~~  148 (529)
                      .+++++|+...
T Consensus       230 ~ei~~~L~~~~  240 (631)
T PHA02792        230 REIFDALFDSN  240 (631)
T ss_pred             HHHHHHHHhcc
Confidence            99999999863

>KOG0508|consensus

Probab=100.00  E-value=1.2e-37  Score=274.08  Aligned_cols=94  Identities=30%  Similarity=0.431  Sum_probs=78.7

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHh
Q psy2356         379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE  458 (529)
Q Consensus       379 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  458 (529)
                      ..+...|.||||+|+..+-...=+      +.+-...+..+.+.|++.|+|+|.+|.+|+||||+|+++....++..|++
T Consensus       476 ~pr~~~~ft~LH~av~~~tt~~gr------y~v~~fPs~~V~k~Llecgadvna~D~~~ntplHIa~~~~~~si~~aLie  549 (615)
T KOG0508|consen  476 APRGKNGFTLLHLAVDKNTTNVGR------YPVCRFPSAHVTKVLLECGADVNARDFDNNTPLHIAAQNNCPSIVNALIE  549 (615)
T ss_pred             cccccCCCchhhhhhccCCCCCCc------ccccCCcHHHHHHHHHHcCCCCCcccCCCCchhHHHHHhccHHHHHHHHH
Confidence            345677999999999876432211      12234467889999999999999999999999999999999999999999


Q ss_pred             CCCCCcchhhcCCCHHHHHH
Q psy2356         459 HGADVSHAAKEGHTALSIAQ  478 (529)
Q Consensus       459 ~g~~~~~~~~~g~t~l~~A~  478 (529)
                      .|+-.+.+|..+.|++..-.
T Consensus       550 ~Gah~datN~~~~t~~~ll~  569 (615)
T KOG0508|consen  550 AGAHLDATNAHKKTALDLLD  569 (615)
T ss_pred             cccchhhhhhccccHHHHhc
Confidence            99999999999999998754

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-36  Score=290.56  Aligned_cols=248  Identities=26%  Similarity=0.334  Sum_probs=207.8

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      +.+++|+.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..             
T Consensus         1 ~~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-------------   67 (413)
T PHA02875          1 MDQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPD-------------   67 (413)
T ss_pred             CCchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC-------------
Confidence            3689999999999999999999999999999999999999999999999999999999998765443             


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC-----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR-----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA  157 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  157 (529)
                                   +.+|||.|+..|+.+++++|++.+..     +..|.||||+|+..|+.+++++|++           
T Consensus        68 -------------~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~-----------  123 (413)
T PHA02875         68 -------------IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA-----------  123 (413)
T ss_pred             -------------cccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh-----------
Confidence                         34566677889999999999988754     2345666666666666666665554           


Q ss_pred             HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy2356         158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA  237 (529)
Q Consensus       158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  237 (529)
                                                                  .|.+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus       124 --------------------------------------------~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~  159 (413)
T PHA02875        124 --------------------------------------------RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA  159 (413)
T ss_pred             --------------------------------------------CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence                                                        334455667788999999999999999999999999


Q ss_pred             CCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHHCCCCcccc---cccCC
Q psy2356         238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG-ETPLHLAARANQTDIIRILLRNGAQVDAR---AREGH  313 (529)
Q Consensus       238 ~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---~~~g~  313 (529)
                      +++..+..|.||||+|+..|+.+++++|++.|++++..+..| .|++|+|+..|+.+++++|+++|++++..   +..+.
T Consensus       160 ~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~  239 (413)
T PHA02875        160 CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEEC  239 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCch
Confidence            999999999999999999999999999999999999988877 47899999999999999999999998865   45677


Q ss_pred             cHHHHHHHc---CChhHHHHh
Q psy2356         314 TALSIAQKL---GYISVEESL  331 (529)
Q Consensus       314 t~l~~a~~~---~~~~~~~~l  331 (529)
                      ||++.++..   ...+.++.+
T Consensus       240 t~l~~~~~~~~~~~~~~~~~l  260 (413)
T PHA02875        240 TILDMICNMCTNLESEAIDAL  260 (413)
T ss_pred             HHHHHHHhhcCCcccHHHHHH
Confidence            888876543   233444444

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-35  Score=262.31  Aligned_cols=229  Identities=18%  Similarity=0.190  Sum_probs=174.0

Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccc
Q psy2356          13 RAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFK   92 (529)
Q Consensus        13 ~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~   92 (529)
                      .+++.+++++|++.|++  ..|..|+||||+|+..|+.+++++|++.|++++..+                         
T Consensus         8 ~~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d-------------------------   60 (284)
T PHA02791          8 TWKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE-------------------------   60 (284)
T ss_pred             ccCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC-------------------------
Confidence            35788999999998764  678999999999999999999999999999876532                         


Q ss_pred             cCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChH
Q psy2356          93 QGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTK  168 (529)
Q Consensus        93 ~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~  168 (529)
                         +.||||+|+..|+.+++++|++++++    +..|.||||+|+..|+.+++++|++.+++                  
T Consensus        61 ---~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad------------------  119 (284)
T PHA02791         61 ---NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR------------------  119 (284)
T ss_pred             ---CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------------
Confidence               34677788899999999999998766    66788888888888888888877765432                  


Q ss_pred             HHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCC
Q psy2356         169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSG-FTPLHIASHYGNEGVANILLDKRADVNFSA-KSG  246 (529)
Q Consensus       169 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~  246 (529)
                                                           ++.++..| .||||+|+..|+.+++++|++++++.  .+ ..|
T Consensus       120 -------------------------------------in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g  160 (284)
T PHA02791        120 -------------------------------------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAIL  160 (284)
T ss_pred             -------------------------------------cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccC
Confidence                                                 33344444 47777777777777777777766432  12 236


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCCh
Q psy2356         247 LTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP-LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI  325 (529)
Q Consensus       247 ~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  325 (529)
                      .||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..|+.+++++|+++|++++.++..+ +++      ++.
T Consensus       161 ~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~  233 (284)
T PHA02791        161 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDA  233 (284)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCH
Confidence            778888888888888888877777777777777765 778888888888888888887777777643 333      677


Q ss_pred             hHHHHhhhhc
Q psy2356         326 SVEESLGAAE  335 (529)
Q Consensus       326 ~~~~~l~~~~  335 (529)
                      |++++|++..
T Consensus       234 e~~~~ll~~~  243 (284)
T PHA02791        234 EIAKMIIEKH  243 (284)
T ss_pred             HHHHHHHHhh
Confidence            7777776544

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.6e-35  Score=277.36  Aligned_cols=413  Identities=14%  Similarity=0.055  Sum_probs=272.5

Q ss_pred             chhHHHHHHHcCCHHHH--HHHHHcCCCCCCCCCCCChHHHHHHHcCC-hhHHHHHHHCCCCCCCCCCCCCchHHHHhhc
Q psy2356           4 GHTSFLRAARAGHLDKI--IEHLKNNVDINTANANGLNALHLASKDGH-LHVVTELLSRGANVDSATKKGNTALHIASLG   80 (529)
Q Consensus         4 g~t~L~~A~~~g~~~~v--~~ll~~~~~~~~~~~~g~t~L~~A~~~g~-~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~   80 (529)
                      |...|...|+.-+++.+  +.|+++|+++-. ...+.||||.-..+.+ ..=++.++..|..++..+-.+.+|+|+.   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~---   78 (631)
T PHA02792          3 NDKILYDSCKTFNIDACSAQSLIESGANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYL---   78 (631)
T ss_pred             chhHHHhHhhccchhHHHHHHHHHcCCCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHH---
Confidence            45667778887766654  567789999876 4777799998765544 2334566666677777777777777754   


Q ss_pred             CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHH-cCcHHHHHHHHhcCCC----C
Q psy2356          81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQ-QGHDKVVAVLLENDTR----G  151 (529)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~-~~~~~~v~~Ll~~~~~----~  151 (529)
                                            |..+|+.|+|++|+++|++    +..+.+|+++|.. .++.|++++|++++++    .
T Consensus        79 ----------------------~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~  136 (631)
T PHA02792         79 ----------------------CSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNI  136 (631)
T ss_pred             ----------------------HHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCccccc
Confidence                                  5778899999999999887    4457788899866 6899999999999865    3


Q ss_pred             CCCcCHHHHHhhCCCh-HHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcC------
Q psy2356         152 KVRLPALHIAAKKDDT-KAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYG------  224 (529)
Q Consensus       152 ~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~------  224 (529)
                      ..+.|++..-+.+... +.-..+     +-+                   +.+..++..+..|.||||+|+..+      
T Consensus       137 ~~g~~~~~~~~~~~~~~~~~~~~-----~~~-------------------~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~  192 (631)
T PHA02792        137 QYGYKIIIEQITRAEYYNWDDEL-----DDY-------------------DYDYTTDYDDRMGKTVLYYYIITRSQDGYA  192 (631)
T ss_pred             ccCcchhhhhcccccccchhhhc-----ccc-------------------ccccccccCCCCCCchHHHHHhhCCccccc
Confidence            5566766544332111 110000     000                   335566788899999999999999      


Q ss_pred             -CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--Hc----C--CHH
Q psy2356         225 -NEGVANILLDKRADVNFSAKSGLTPLHVASFMG--CMNIVIYLLQNDANPDIPTVRGETPLHLAA--RA----N--QTD  293 (529)
Q Consensus       225 -~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~--~~----~--~~~  293 (529)
                       ++++++.|+++|++++..+..|.||||+|+.+.  ..+++++|++...+.    ......|..-.  +.    +  +..
T Consensus       193 ~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~----~~~~~~l~~y~~~~~~~~~~~id~~  268 (631)
T PHA02792        193 TSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSG----NELMNILSNYLRKQYRNKNHKIDNY  268 (631)
T ss_pred             CCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccc----cchHhHHHHHHHHHhccCccCccHH
Confidence             899999999999999999999999999999999  899999999852211    11223333222  11    1  344


Q ss_pred             HHHHHHHCCCCcccc------ccc-------------CCcHHHHHHHcC--ChhHHHHhhhhcccccccCCCCCCcHHHH
Q psy2356         294 IIRILLRNGAQVDAR------ARE-------------GHTALSIAQKLG--YISVEESLGAAERSQLKKRGREGHTALSI  352 (529)
Q Consensus       294 ~~~~Ll~~g~~~~~~------~~~-------------g~t~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  352 (529)
                      +|..|++.+-.-...      +..             -+..||.-..++  +.+++++|++.+....   .....++++.
T Consensus       269 iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~  345 (631)
T PHA02792        269 IVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQ  345 (631)
T ss_pred             HHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHH
Confidence            888888865421111      000             011222222222  3344444444332211   1112334444


Q ss_pred             HHHhCchhHHHHhhhhhhHHHHhhcC--CCCCCC--CchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCC
Q psy2356         353 AQKLGYISVEESLKGVTETLIIAKGD--GEKHKN--GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGA  428 (529)
Q Consensus       353 a~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~--g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~  428 (529)
                      |+..++.+++++|        ...+.  +..+..  +.||||+|+.....++                .+++++|+++|+
T Consensus       346 Aa~~gn~eIVelL--------Is~GADIN~kD~~g~~~TpLh~A~~n~~~~v----------------~~IlklLIs~GA  401 (631)
T PHA02792        346 KFDNRDPKVVEYI--------LKNGNVVVEDDDNIINIMPLFPTLSIHESDV----------------LSILKLCKPYID  401 (631)
T ss_pred             HHHcCCHHHHHHH--------HHcCCchhhhcCCCCChhHHHHHHHhccHhH----------------HHHHHHHHhcCC
Confidence            5555555555554        22222  122222  2345554443332221                124566777888


Q ss_pred             CCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHH---h-------CCchHHHHhhcccchhh
Q psy2356         429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK---L-------GYISVEESLKGVTETLI  497 (529)
Q Consensus       429 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~---~-------~~~~~~~~L~~~~~~~~  497 (529)
                      |+|.++..|+||||+|+..++.+++++|+++|++++..|..|.|||++|+.   .       ...++++.|++.++.+.
T Consensus       402 DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        402 DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            999999999999999999999999999999999999999999999999986   2       22566888888776653

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.4e-35  Score=285.98  Aligned_cols=294  Identities=17%  Similarity=0.175  Sum_probs=220.7

Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCChHHHHHH--HcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcccccccccccc
Q psy2356          16 HLDKIIEHLKNNVDINTANANGLNALHLAS--KDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQ   93 (529)
Q Consensus        16 ~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~--~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~   93 (529)
                      +++.|+.|++.+ +++.. ..+.|+++.+.  ..++.++|++|+++|++++..+..|.||||+++.              
T Consensus        17 ~~~~v~~ll~~~-~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~--------------   80 (489)
T PHA02798         17 KLSTVKLLIKSC-NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILS--------------   80 (489)
T ss_pred             cHHHHHHHHhcC-Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHH--------------
Confidence            578999999765 44433 34667776443  3458999999999999999988888777776531              


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHH
Q psy2356          94 GDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLL  173 (529)
Q Consensus        94 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~l  173 (529)
                                  +                        .+...+..                             +++++|
T Consensus        81 ------------n------------------------~~~~~~~~-----------------------------~iv~~L   95 (489)
T PHA02798         81 ------------N------------------------IKDYKHML-----------------------------DIVKIL   95 (489)
T ss_pred             ------------h------------------------HHhHHhHH-----------------------------HHHHHH
Confidence                        1                        00011122                             333333


Q ss_pred             HhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcC---CHHHHHHHHhCCCCCcccCCCCCcHH
Q psy2356         174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYG---NEGVANILLDKRADVNFSAKSGLTPL  250 (529)
Q Consensus       174 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~~~~~l  250 (529)
                      +                          +.|++++.++..|.||||+|+..+   +.+++++|+++|++++..+..|.|||
T Consensus        96 l--------------------------~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL  149 (489)
T PHA02798         96 I--------------------------ENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTML  149 (489)
T ss_pred             H--------------------------HCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHH
Confidence            3                          445566778889999999999875   78999999999999999999999999


Q ss_pred             HHHHHcCC---HHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHc----CCHHHHHHHHHCCCCcccccccCCcHHHHHHHc
Q psy2356         251 HVASFMGC---MNIVIYLLQNDANPDIPT-VRGETPLHLAARA----NQTDIIRILLRNGAQVDARAREGHTALSIAQKL  322 (529)
Q Consensus       251 ~~a~~~~~---~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~~----~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  322 (529)
                      |+|+..++   .+++++|++.|++++..+ ..|.||||.++..    ++.+++++|+++|++++..+..+.++++.... 
T Consensus       150 ~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~-  228 (489)
T PHA02798        150 QVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLN-  228 (489)
T ss_pred             HHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHH-
Confidence            99999988   999999999999999875 4688999998764    48999999999999999988888887762110 


Q ss_pred             CChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHH
Q psy2356         323 GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAE  402 (529)
Q Consensus       323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  402 (529)
                                                .+..+...+..+++.++.       ...+.+.++..|.||||+|+..|+.++++
T Consensus       229 --------------------------~l~~~~~~~~~~i~~~l~-------~~~dvN~~d~~G~TPL~~A~~~~~~~~v~  275 (489)
T PHA02798        229 --------------------------SLLYDNKRFKKNILDFIF-------SYIDINQVDELGFNPLYYSVSHNNRKIFE  275 (489)
T ss_pred             --------------------------HHHhhcccchHHHHHHHH-------hcCCCCCcCcCCccHHHHHHHcCcHHHHH
Confidence                                      011111222233333331       12334667778999999999999988888


Q ss_pred             HHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhc
Q psy2356         403 LLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKE  469 (529)
Q Consensus       403 ~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  469 (529)
                      +|+++                   |+|++.++..|+|||++|+.+++.++++.|+++|++++..+..
T Consensus       276 ~LL~~-------------------GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i~~~  323 (489)
T PHA02798        276 YLLQL-------------------GGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTISYT  323 (489)
T ss_pred             HHHHc-------------------CCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHHHHH
Confidence            88876                   5667888889999999999999999999999999998765443

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.5e-35  Score=287.04  Aligned_cols=259  Identities=18%  Similarity=0.192  Sum_probs=203.6

Q ss_pred             CCCCHHHHHHH--cCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356         212 SGFTPLHIASH--YGNEGVANILLDKRADVNFSAKSGLTPLHVASFM-----GCMNIVIYLLQNDANPDIPTVRGETPLH  284 (529)
Q Consensus       212 ~~~t~l~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~-----~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  284 (529)
                      .+.|+++.+..  .++.+++++|+++|++++..+..|.|||+.++.+     +..+++++|+++|++++..+..|.||||
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh  114 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLY  114 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHH
Confidence            34566654443  3478899999999999998888899999888754     5688999999999999999989999999


Q ss_pred             HHHHcC---CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCC---hhHHHHhhhhcccccccC-CCCCCcHHHHHHHhC
Q psy2356         285 LAARAN---QTDIIRILLRNGAQVDARAREGHTALSIAQKLGY---ISVEESLGAAERSQLKKR-GREGHTALSIAQKLG  357 (529)
Q Consensus       285 ~a~~~~---~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~---~~~~~~l~~~~~~~~~~~-~~~~~~~l~~a~~~~  357 (529)
                      +|+..+   +.+++++|+++|++++..+..|.||||+|+..++   .+++++|++.+ .+++.. +..|.||+|.++..+
T Consensus       115 ~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g-adin~~~~~~~~t~Lh~~~~~~  193 (489)
T PHA02798        115 CLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG-VDINTHNNKEKYDTLHCYFKYN  193 (489)
T ss_pred             HHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC-CCcccccCcCCCcHHHHHHHhc
Confidence            998875   6889999999999999999999999999998887   88888887654 555554 456778888776543


Q ss_pred             ----chhHHHHhhhhhhHHHHhhcC--CCCCCCCchHHHH-------HHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHH
Q psy2356         358 ----YISVEESLKGVTETLIIAKGD--GEKHKNGLTPLHL-------CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLL  424 (529)
Q Consensus       358 ----~~~~~~~l~~~~~~~~~~~~~--~~~~~~g~t~L~~-------A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~  424 (529)
                          +.++++++        ...+.  +..+..|.++++.       +...++.++++                   +|+
T Consensus       194 ~~~~~~~ivk~L--------i~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~-------------------~l~  246 (489)
T PHA02798        194 IDRIDADILKLF--------VDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILD-------------------FIF  246 (489)
T ss_pred             cccCCHHHHHHH--------HHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHH-------------------HHH
Confidence                56677776        33222  3344455666551       22233333433                   333


Q ss_pred             HcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhc
Q psy2356         425 EYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIA  499 (529)
Q Consensus       425 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~  499 (529)
                       .|+|+|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|++.++.++++.|++.++++...
T Consensus       247 -~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        247 -SYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             -hcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence             36899999999999999999999999999999999999999999999999999999999999999998877643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=284.22  Aligned_cols=253  Identities=18%  Similarity=0.231  Sum_probs=198.1

Q ss_pred             CchhHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC------ChhHHHHHHHCCCCCCCCCCCCCchH
Q psy2356           3 EGHTSFLRAARAG--HLDKIIEHLKNNVDINTANANGLNALHLASKDG------HLHVVTELLSRGANVDSATKKGNTAL   74 (529)
Q Consensus         3 ~g~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g------~~~iv~~Ll~~ga~~~~~~~~~~~~l   74 (529)
                      +|.|+|+.++..+  +.++|+.|+++|+++|..+ .+.||||.|+.++      +.+++++|+++|++++.++..|.|||
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL  112 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPI  112 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            5889998766554  6899999999999999886 5699999998754      57899999999999999998888888


Q ss_pred             HHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC-----CCCCCcHHHHHHHc--CcHHHHHHHHhc
Q psy2356          75 HIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR-----GKDGFTPLAVAMQQ--GHDKVVAVLLEN  147 (529)
Q Consensus        75 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~l~~A~~~--~~~~~v~~Ll~~  147 (529)
                      |+|+                       +++..++.+++++|+++|++     +..|.||||+|+..  ++.+++++|++.
T Consensus       113 ~~a~-----------------------~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989        113 VCFI-----------------------YNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HHHH-----------------------HhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            7664                       23345789999999999876     35678888887654  456677666654


Q ss_pred             CCCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCc-CCCCCCCHHHHHHHcC--
Q psy2356         148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDV-TSKSGFTPLHIASHYG--  224 (529)
Q Consensus       148 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~A~~~~--  224 (529)
                      +++                                                       ++. .+..|.||||.|+..+  
T Consensus       170 Gad-------------------------------------------------------i~~~~~~~g~tpL~~a~~~~~~  194 (494)
T PHA02989        170 GVN-------------------------------------------------------LFEKTSLYGLTPMNIYLRNDID  194 (494)
T ss_pred             CCC-------------------------------------------------------ccccccccCCChHHHHHhcccc
Confidence            433                                                       222 3446778888876654  


Q ss_pred             --CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHc------CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy2356         225 --NEGVANILLDKRADVNFSAKSGLTPLHVASFM------GCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR  296 (529)
Q Consensus       225 --~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~------~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  296 (529)
                        +.+++++|+++|++++..+..+.++++.++..      +..+++++|++ |++++.+|..|.||||+|+..|+.++++
T Consensus       195 ~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~  273 (494)
T PHA02989        195 VISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFN  273 (494)
T ss_pred             cccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHH
Confidence              78888888888888888887788888776543      34667776654 6888888888888888888888888888


Q ss_pred             HHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356         297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAE  335 (529)
Q Consensus       297 ~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  335 (529)
                      +|+++|++++.++..|.||||+|+..|+.++++.|++..
T Consensus       274 ~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        274 YLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            888888888888888888888888888888888887654

>KOG4412|consensus

Probab=100.00  E-value=7.6e-36  Score=228.77  Aligned_cols=181  Identities=36%  Similarity=0.542  Sum_probs=139.6

Q ss_pred             CCcCCC-CCCCHHHHHHHcCCHHHHHHHH-hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcH
Q psy2356         206 PDVTSK-SGFTPLHIASHYGNEGVANILL-DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETP  282 (529)
Q Consensus       206 ~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~  282 (529)
                      ++.++. +++||||+||.+|+.+++.+|+ +.+..++.+|..||||||.|+..|+.++|+.|+.+ |+++|..+..|.|+
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~  109 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTC  109 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcce
Confidence            344444 7788888888888888888888 44666777777888888888888888888888877 78888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHH
Q psy2356         283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVE  362 (529)
Q Consensus       283 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  362 (529)
                      ||+|+..|.++|+++|+++|+.++.+|..|.||||.|                                           
T Consensus       110 LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRA-------------------------------------------  146 (226)
T KOG4412|consen  110 LHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRA-------------------------------------------  146 (226)
T ss_pred             ehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHH-------------------------------------------
Confidence            8888888888888888888877777666655555544                                           


Q ss_pred             HHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHH
Q psy2356         363 ESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH  442 (529)
Q Consensus       363 ~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~  442 (529)
                                                    +..|+++++++|+..                   |+.+|.+|..|+||||
T Consensus       147 ------------------------------AavGklkvie~Li~~-------------------~a~~n~qDk~G~TpL~  177 (226)
T KOG4412|consen  147 ------------------------------AAVGKLKVIEYLISQ-------------------GAPLNTQDKYGFTPLH  177 (226)
T ss_pred             ------------------------------HhccchhhHHHHHhc-------------------CCCCCcccccCccHHH
Confidence                                          444555444444443                   4566888999999999


Q ss_pred             HHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHH
Q psy2356         443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK  479 (529)
Q Consensus       443 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  479 (529)
                      +|.-.|+.+...+|+++|++++..|+.| ||+..|.-
T Consensus       178 ~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  178 HALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            9988889999999999999999999988 99887763

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-34  Score=276.84  Aligned_cols=252  Identities=21%  Similarity=0.251  Sum_probs=219.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356         213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT  292 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~  292 (529)
                      .+++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+.||||.|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            36899999999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHHHHHCCCCcc-cccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhH
Q psy2356         293 DIIRILLRNGAQVD-ARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTET  371 (529)
Q Consensus       293 ~~~~~Ll~~g~~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~  371 (529)
                      +++++|+++|.+.+ ..+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|.+.   
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~---  157 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH---  157 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc---
Confidence            99999999998764 4566799999999999999999999875 467788889999999999999999999999432   


Q ss_pred             HHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCC-CCHHHHHHHcCcH
Q psy2356         372 LIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAG-FTPLHLSASEGHA  450 (529)
Q Consensus       372 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g-~t~L~~A~~~~~~  450 (529)
                         ....+..+..|.||||+|+..|+.+++++|+++|+                   +++..+..| .||+++|+..|+.
T Consensus       158 ---g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga-------------------~~n~~~~~~~~t~l~~A~~~~~~  215 (413)
T PHA02875        158 ---KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA-------------------NIDYFGKNGCVAALCYAIENNKI  215 (413)
T ss_pred             ---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-------------------CCCcCCCCCCchHHHHHHHcCCH
Confidence               23346778899999999999999999999988755                   556666666 5889999999999


Q ss_pred             HHHHHHHhCCCCCcch---hhcCCCHHHHHHHh---CCchHHHHhh
Q psy2356         451 DMSAMLLEHGADVSHA---AKEGHTALSIAQKL---GYISVEESLK  490 (529)
Q Consensus       451 ~~v~~Ll~~g~~~~~~---~~~g~t~l~~A~~~---~~~~~~~~L~  490 (529)
                      ++|++|+++|+|+++.   +..+.|+++++...   ...+.++.+.
T Consensus       216 ~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        216 DIVRLFIKRGADCNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             HHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            9999999999999876   56788999987654   3445555554

>KOG0508|consensus

Probab=100.00  E-value=9.7e-35  Score=255.86  Aligned_cols=157  Identities=32%  Similarity=0.438  Sum_probs=146.1

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2356         209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAAR  288 (529)
Q Consensus       209 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~  288 (529)
                      ....|.+||..|+..|++++|+.|+++|+++|.......|||..||.-|+++++++|+++|+|+++.+..|.|.||+|+.
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~y  159 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACY  159 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeec
Confidence            34578899999999999999999999999999888888899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhh
Q psy2356         289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKG  367 (529)
Q Consensus       289 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~  367 (529)
                      .|+.+|+++|++.|+|+|.++..|+|+||.++..|+++++++|+.....  -..+..|.|||..|+..|+.+++++|..
T Consensus       160 kGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  160 KGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK--IDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCce--eeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999999999999999999999865532  3456669999999999999999999965

>KOG4412|consensus

Probab=100.00  E-value=3.6e-35  Score=225.06  Aligned_cols=209  Identities=33%  Similarity=0.462  Sum_probs=174.1

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCC-CCCCC-CCCCChHHHHHHHcCChhHHHHHHHC-CCCCCCCCCCCCchHHHHhh
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNV-DINTA-NANGLNALHLASKDGHLHVVTELLSR-GANVDSATKKGNTALHIASL   79 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~-~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~l~~a~~   79 (529)
                      .+.++.+.+|......-|+.+++... ..+.+ |.+|+|||||||..|+.+|+++|+++ +..++..|.           
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-----------   70 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-----------   70 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-----------
Confidence            35678899999999999999998654 44544 45899999999999999999999963 555554444           


Q ss_pred             cCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHH
Q psy2356          80 GEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALH  159 (529)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~  159 (529)
                                                                  .|+||||+|+..|+.++|+.|+.             
T Consensus        71 --------------------------------------------aGWtPlhia~s~g~~evVk~Ll~-------------   93 (226)
T KOG4412|consen   71 --------------------------------------------AGWTPLHIAASNGNDEVVKELLN-------------   93 (226)
T ss_pred             --------------------------------------------cCCchhhhhhhcCcHHHHHHHhc-------------
Confidence                                                        34455555555555555555553             


Q ss_pred             HHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Q psy2356         160 IAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV  239 (529)
Q Consensus       160 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  239 (529)
                                                               +.+.+++..+..|.|+||+|+.+|+++++++|+++|+.+
T Consensus        94 -----------------------------------------r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i  132 (226)
T KOG4412|consen   94 -----------------------------------------RSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI  132 (226)
T ss_pred             -----------------------------------------CCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC
Confidence                                                     235566778888999999999999999999999999999


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHH
Q psy2356         240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA  319 (529)
Q Consensus       240 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  319 (529)
                      +.+|..|.||||.|+..|.++++++|+..|+.+|..|..|+||||.|.-.|+.+...+|+++|+++...|+.| |++..|
T Consensus       133 ~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  133 RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIA  211 (226)
T ss_pred             cccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHH
Confidence            9999999999999999999999999999999999999999999999988899999999999999999999988 898776


Q ss_pred             HH
Q psy2356         320 QK  321 (529)
Q Consensus       320 ~~  321 (529)
                      +.
T Consensus       212 ~~  213 (226)
T KOG4412|consen  212 CN  213 (226)
T ss_pred             HH
Confidence            53

>KOG0509|consensus

Probab=99.98  E-value=3.4e-31  Score=244.08  Aligned_cols=210  Identities=29%  Similarity=0.406  Sum_probs=186.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHc
Q psy2356         212 SGFTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLAARA  289 (529)
Q Consensus       212 ~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~~  289 (529)
                      .....+..|++.|.++.++.|++. |.+++..|.+|.++||+|+.+++++++++|+++|+++|... .-+.||||+|+++
T Consensus        43 ~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   43 SSLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            335778899999999999999999 99999999999999999999999999999999999999988 5689999999999


Q ss_pred             CCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhh
Q psy2356         290 NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT  369 (529)
Q Consensus       290 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~  369 (529)
                      |+..++++|+++|+|++.+|.+|.+|+|.|+..|+.-++-+++...                                  
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~----------------------------------  168 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG----------------------------------  168 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc----------------------------------
Confidence            9999999999999999999999999999999999999999996433                                  


Q ss_pred             hHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcc-cCCCCHHHHHHHcC
Q psy2356         370 ETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES-VAGFTPLHLSASEG  448 (529)
Q Consensus       370 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~-~~g~t~L~~A~~~~  448 (529)
                            .+.+.+|..|+||||+|+.+|.-..++.|++.|+                   .++.+| ..|+||||+|+..|
T Consensus       169 ------~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a-------------------~~~~~d~~~g~TpLHwa~~~g  223 (600)
T KOG0509|consen  169 ------ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA-------------------SLLLTDDNHGNTPLHWAVVGG  223 (600)
T ss_pred             ------ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc-------------------cccccccccCCchHHHHHhcC
Confidence                  2335667788888888888888776777777644                   456665 78999999999999


Q ss_pred             cHHHHHHHHhCCCCCcchhhcCCCHHHHHHHh
Q psy2356         449 HADMSAMLLEHGADVSHAAKEGHTALSIAQKL  480 (529)
Q Consensus       449 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  480 (529)
                      +.+++++|++-|++.+.+|.+|.||+++|.+.
T Consensus       224 N~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  224 NLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999977788899999999999999999877

>KOG0509|consensus

Probab=99.97  E-value=1.2e-30  Score=240.60  Aligned_cols=205  Identities=33%  Similarity=0.458  Sum_probs=159.6

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcc
Q psy2356           5 HTSFLRAARAGHLDKIIEHLKN-NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL   83 (529)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~   83 (529)
                      .+.++.|++.|+++.|+.+++. |.+++..|..|-|+|||||.+++.+++++|+++|+++|...-               
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG---------------  109 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGG---------------  109 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCC---------------
Confidence            4678999999999999999998 999999999999999999999999999999999999997652               


Q ss_pred             ccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHH
Q psy2356          84 VPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALH  159 (529)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~  159 (529)
                                .-+.||||||+++|+..+|++|+++|++    |.+|.+|+|.|+..|+.-++-|++.             
T Consensus       110 ----------~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~-------------  166 (600)
T KOG0509|consen  110 ----------VLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLS-------------  166 (600)
T ss_pred             ----------CCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHH-------------
Confidence                      2345777778888888888888888877    6667777777777777666666653             


Q ss_pred             HHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Q psy2356         160 IAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV  239 (529)
Q Consensus       160 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  239 (529)
                                                                .+.+++.+|..|+|||++|+.+|....+..|++.|+.+
T Consensus       167 ------------------------------------------~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  167 ------------------------------------------KGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL  204 (600)
T ss_pred             ------------------------------------------hcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence                                                      23456677777777777777777766677777777777


Q ss_pred             cccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy2356         240 NFSA-KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA  289 (529)
Q Consensus       240 ~~~~-~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~  289 (529)
                      ...| ..|.||||+|+..|+...++.|++-|.+.+..+.+|.||+..|...
T Consensus       205 ~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  205 LLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            7666 6677777777777777777755555677777777777777777655

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=224.66  Aligned_cols=101  Identities=12%  Similarity=0.057  Sum_probs=63.4

Q ss_pred             HHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc------ccCCCCCcHHHHHHH--cCCHHHHHHHHHC
Q psy2356         197 GYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN------FSAKSGLTPLHVASF--MGCMNIVIYLLQN  268 (529)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~~~~~l~~a~~--~~~~~~v~~Ll~~  268 (529)
                      +|++.+|.+++....++     +|+..+..+++++|+.+|++++      .++..++|+||.++.  .|+.+++++|+++
T Consensus        66 ~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~  140 (437)
T PHA02795         66 DYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH  140 (437)
T ss_pred             HHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC
Confidence            45555555555554444     5666666667777776666665      455556666666666  6666666666666


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy2356         269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ  304 (529)
Q Consensus       269 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  304 (529)
                      |++++..  .+.||+|.|+..++.+++++|+++|++
T Consensus       141 GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~  174 (437)
T PHA02795        141 GAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIP  174 (437)
T ss_pred             CCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCc
Confidence            6666653  235666666666666666666666653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.3e-27  Score=203.70  Aligned_cols=177  Identities=17%  Similarity=0.185  Sum_probs=137.3

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHH
Q psy2356         212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG--CMNIVIYLLQNDANPDIPT-VRGETPLHLAAR  288 (529)
Q Consensus       212 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~--~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~  288 (529)
                      .+.+||+.|+..|+.+.++.|++.   ++..+..|.||||+|+.++  +.+++++|++.|++++..+ ..|.||||+|+.
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            457888888888888888888865   4556777888888888754  7888888888888888876 478888888765


Q ss_pred             c---CCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356         289 A---NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL  365 (529)
Q Consensus       289 ~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  365 (529)
                      .   ++.+++++|+++|++++..+..|.||||.|+..                                           
T Consensus        97 ~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~-------------------------------------------  133 (209)
T PHA02859         97 FNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCN-------------------------------------------  133 (209)
T ss_pred             hCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh-------------------------------------------
Confidence            3   468888888888888877777666666554321                                           


Q ss_pred             hhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHH-H
Q psy2356         366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL-S  444 (529)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~-A  444 (529)
                                                  ..++.+++++|++                   .|++++.++..|.||||. |
T Consensus       134 ----------------------------~~~~~~iv~~Li~-------------------~gadin~~d~~g~t~Lh~~a  166 (209)
T PHA02859        134 ----------------------------FNVRINVIKLLID-------------------SGVSFLNKDFDNNNILYSYI  166 (209)
T ss_pred             ----------------------------ccCCHHHHHHHHH-------------------cCCCcccccCCCCcHHHHHH
Confidence                                        1234555555554                   467778899999999996 5


Q ss_pred             HHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhC
Q psy2356         445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLG  481 (529)
Q Consensus       445 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  481 (529)
                      +..++.+++++|+++|++++.+|..|.|||++|...+
T Consensus       167 ~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        167 LFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            6678999999999999999999999999999998764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.3e-27  Score=216.24  Aligned_cols=230  Identities=16%  Similarity=0.121  Sum_probs=179.5

Q ss_pred             HHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCC------CCCCCCCchHHHHhhcCccccccccccc
Q psy2356          19 KIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVD------SATKKGNTALHIASLGEFLVPVWLGDFK   92 (529)
Q Consensus        19 ~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~------~~~~~~~~~l~~a~~~~~~~~~~~~~~~   92 (529)
                      +-+|++++|+++|.....|     +|+..+..|++++|+++|++++      ..+..+                      
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~----------------------  116 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSV----------------------  116 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccc----------------------
Confidence            3478888999999887766     8999999999999999999988      333334                      


Q ss_pred             cCCCCCHHHHHHH--cCcHHHHHHHhhcCCCC--CCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChH
Q psy2356          93 QGDGFTPLAVAMQ--QGHDKVVAVLLENDTRG--KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTK  168 (529)
Q Consensus        93 ~~~~~~~l~~A~~--~~~~~~v~~Ll~~~~~~--~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~  168 (529)
                          .|+||.++.  .|+.++|++|+++|++-  .++.||++.|+..++.+++++|+++++......             
T Consensus       117 ----~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~-------------  179 (437)
T PHA02795        117 ----QDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDV-------------  179 (437)
T ss_pred             ----cHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccc-------------
Confidence                445555566  78999999999999882  345788888888888888888888775321100             


Q ss_pred             HHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCc
Q psy2356         169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLT  248 (529)
Q Consensus       169 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  248 (529)
                                                          +.+..+..+.+++|.|...++.+++++|+++|++++.++..|.|
T Consensus       180 ------------------------------------~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~T  223 (437)
T PHA02795        180 ------------------------------------KLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRT  223 (437)
T ss_pred             ------------------------------------cchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCC
Confidence                                                00111123568999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC--------HHHHHHHHHCCCCcccccccCCcHHHHHH
Q psy2356         249 PLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ--------TDIIRILLRNGAQVDARAREGHTALSIAQ  320 (529)
Q Consensus       249 ~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~--------~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  320 (529)
                      |||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+        .+++++|+++|++++.....   ++..  
T Consensus       224 pLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~---~~~~--  298 (437)
T PHA02795        224 LLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA---ILNN--  298 (437)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH---hhhc--
Confidence            9999999999999999999999999999999999999999884        68999999999988764322   2111  


Q ss_pred             HcCChhHHHHhhh
Q psy2356         321 KLGYISVEESLGA  333 (529)
Q Consensus       321 ~~~~~~~~~~l~~  333 (529)
                      ...+.++++.++.
T Consensus       299 ~~~n~~~ik~lI~  311 (437)
T PHA02795        299 TIENHDVIKLCIK  311 (437)
T ss_pred             ccchHHHHHHHHH
Confidence            1125567776644

>KOG4369|consensus

Probab=99.95  E-value=9e-29  Score=238.63  Aligned_cols=274  Identities=24%  Similarity=0.294  Sum_probs=183.5

Q ss_pred             HHHcCcHHHHHHHhhcCCC-----CCCCCcHHHHHHHcCcHHHHHHHHhcCCC----CCCCcCHHHHHhhCCChHHHHHH
Q psy2356         103 AMQQGHDKVVAVLLENDTR-----GKDGFTPLAVAMQQGHDKVVAVLLENDTR----GKVRLPALHIAAKKDDTKAAKLL  173 (529)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~-----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~a~~~~~~~~~~~l  173 (529)
                      |+..||..+|+.|+.+.++     +..+.|+|-+||..|+.++|++|+..++.    ....+||+..|...|+.+++..|
T Consensus       797 aatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~l  876 (2131)
T KOG4369|consen  797 AATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHAL  876 (2131)
T ss_pred             hcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHH
Confidence            3444444444444444322     44444555555555555555555554332    22234555555555555555555


Q ss_pred             HhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccc-CCCCCcHHHH
Q psy2356         174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS-AKSGLTPLHV  252 (529)
Q Consensus       174 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~~~l~~  252 (529)
                      +..|..++..                        .-.+-|.+||..|...|+.+.++.|++.|.++|.. ..+..|+|-.
T Consensus       877 lS~GseInSr------------------------tgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltl  932 (2131)
T KOG4369|consen  877 LSSGSEINSR------------------------TGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTL  932 (2131)
T ss_pred             hhcccccccc------------------------cccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceee
Confidence            5444332211                        12335678888888889888888888888888764 5567788888


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccc--ccCCcHHHHHHHcCChhHHHH
Q psy2356         253 ASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA--REGHTALSIAQKLGYISVEES  330 (529)
Q Consensus       253 a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~l~~a~~~~~~~~~~~  330 (529)
                      |+..|+.+.+.+|+...+++..+-..|-|||+-++..|..|+=++|+..|+|.|...  ....|++.+++..||...++.
T Consensus       933 a~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~ 1012 (2131)
T KOG4369|consen  933 ALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPK 1012 (2131)
T ss_pred             ccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHH
Confidence            888899999988888888888888888899988888888888889999888876532  234466777777777777777


Q ss_pred             hhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q psy2356         331 LGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQ  410 (529)
Q Consensus       331 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  410 (529)
                      |+....                                        .....+..|+|+|..|+..|.+..+..|+++   
T Consensus      1013 lln~~a----------------------------------------tv~v~NkkG~T~Lwla~~Gg~lss~~il~~~--- 1049 (2131)
T KOG4369|consen 1013 LLNGDA----------------------------------------TVRVPNKKGCTVLWLASAGGALSSCPILVSS--- 1049 (2131)
T ss_pred             hhCCcc----------------------------------------ceecccCCCCcccchhccCCccccchHHhhc---
Confidence            743221                                        0133456788888888888877776666654   


Q ss_pred             CCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2356         411 VDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH  459 (529)
Q Consensus       411 ~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  459 (529)
                                      ++|++.+|....++++-|.+.|+++||++....
T Consensus      1050 ----------------~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1050 ----------------VADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             ----------------ccChhhhhcccccccHHHHHhchhheeccccCc
Confidence                            556677777778888888888888888887765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.2e-25  Score=193.08  Aligned_cols=120  Identities=13%  Similarity=0.180  Sum_probs=98.1

Q ss_pred             CCCCcCC-CCCCCHHHHHHHc---CCHHHHHHHHhCCCCCcccCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCC
Q psy2356         204 HNPDVTS-KSGFTPLHIASHY---GNEGVANILLDKRADVNFSAKSGLTPLHVASF--MGCMNIVIYLLQNDANPDIPTV  277 (529)
Q Consensus       204 ~~~~~~~-~~~~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~--~~~~~~v~~Ll~~g~~~~~~~~  277 (529)
                      .+++.++ ..|.||||+|+..   ++.+++++|+++|++++.++..|.||||.|+.  .++.+++++|++.|++++.+|.
T Consensus        77 advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~  156 (209)
T PHA02859         77 ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF  156 (209)
T ss_pred             CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence            3444554 3678899987753   46889999999999999988899999998875  4678899999999999988888


Q ss_pred             CCCcHHHH-HHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcC
Q psy2356         278 RGETPLHL-AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG  323 (529)
Q Consensus       278 ~~~t~l~~-a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  323 (529)
                      .|.||||. ++..++.+++++|+++|++++.++..|.||+++|..++
T Consensus       157 ~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        157 DNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            89999985 55677889999999999999888888999998887654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=3.6e-24  Score=221.79  Aligned_cols=177  Identities=26%  Similarity=0.328  Sum_probs=138.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCC
Q psy2356         245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY  324 (529)
Q Consensus       245 ~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  324 (529)
                      .+.++|+.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||.|+..|+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~  603 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKH  603 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            34567777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHH
Q psy2356         325 ISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELL  404 (529)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  404 (529)
                      .+++++|++..                                          .......+.++||.|+..|+.+++++|
T Consensus       604 ~~iv~~L~~~~------------------------------------------~~~~~~~~~~~L~~Aa~~g~~~~v~~L  641 (823)
T PLN03192        604 HKIFRILYHFA------------------------------------------SISDPHAAGDLLCTAAKRNDLTAMKEL  641 (823)
T ss_pred             HHHHHHHHhcC------------------------------------------cccCcccCchHHHHHHHhCCHHHHHHH
Confidence            77777774311                                          112233566899999999999999988


Q ss_pred             HhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcC-CCHHHHHHHhCC
Q psy2356         405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEG-HTALSIAQKLGY  482 (529)
Q Consensus       405 l~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~~  482 (529)
                      +++                   |+|+|.+|.+|.||||+|+..|+.+++++|+++|++++..|..| .||++++.....
T Consensus       642 l~~-------------------Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        642 LKQ-------------------GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHC-------------------CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHH
Confidence            886                   55678899999999999999999999999999999999999988 999998865443

>KOG0507|consensus

Probab=99.93  E-value=1.2e-24  Score=203.63  Aligned_cols=239  Identities=29%  Similarity=0.404  Sum_probs=206.5

Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356         204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL  283 (529)
Q Consensus       204 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  283 (529)
                      ...+.++.+|.|+||.|+..|+.+++++|++..+-++..+..|.+|||+|+.+|+.++++.++.++..+|.....|.|||
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tpl  119 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPL  119 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCcc
Confidence            45677888999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHH
Q psy2356         284 HLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE  363 (529)
Q Consensus       284 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  363 (529)
                      |.|+++|+.+++.+|+.+|++.-..+..+.|++..|++.|..++++.|+...   +...                     
T Consensus       120 hlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~---~~~~---------------------  175 (854)
T KOG0507|consen  120 HLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKK---FPVQ---------------------  175 (854)
T ss_pred             chhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhc---cchh---------------------
Confidence            9999999999999999999999999999999999999999999999997641   1110                     


Q ss_pred             HhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHH
Q psy2356         364 SLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL  443 (529)
Q Consensus       364 ~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~  443 (529)
                      .+        ...+...++..+.+|||.|+++|+.++++.|++.|.                   |+|.+... -|+||.
T Consensus       176 ~~--------~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~-------------------din~~t~~-gtalhe  227 (854)
T KOG0507|consen  176 SS--------LRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF-------------------DINYTTED-GTALHE  227 (854)
T ss_pred             hc--------ccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC-------------------Cccccccc-chhhhh
Confidence            00        112245667788899999999999999988888755                   45555443 489999


Q ss_pred             HHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHh---CCchHHHHhhcccc
Q psy2356         444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKL---GYISVEESLKGVTE  494 (529)
Q Consensus       444 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~---~~~~~~~~L~~~~~  494 (529)
                      |+.+|..++|++|++-|...++++..|+|+|++-..+   ...+++-++..+..
T Consensus       228 aalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~~~~  281 (854)
T KOG0507|consen  228 AALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKNFEQ  281 (854)
T ss_pred             HhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhhcccc
Confidence            9999999999999999999999999999999988754   45667777766655

>KOG0502|consensus

Probab=99.92  E-value=3.7e-25  Score=175.82  Aligned_cols=106  Identities=24%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2356         209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAAR  288 (529)
Q Consensus       209 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~  288 (529)
                      ..+...++|..|+..|..++|++|+..+.++|..|.+|-|||.+|++.++.++++.|+..|++++..+..|.+++..|+.
T Consensus       189 lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAVa  268 (296)
T KOG0502|consen  189 LGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVA  268 (296)
T ss_pred             hhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHH
Confidence            33344566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHCCCCcccccccCCcH
Q psy2356         289 ANQTDIIRILLRNGAQVDARAREGHTA  315 (529)
Q Consensus       289 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~  315 (529)
                      .|.. +++..+++.+....++..-++|
T Consensus       269 lGyr-~Vqqvie~h~lkl~Q~~~~~~~  294 (296)
T KOG0502|consen  269 LGYR-IVQQVIEKHALKLCQDSEKRTP  294 (296)
T ss_pred             hhhH-HHHHHHHHHHHHHhhcccCCCC
Confidence            6655 6666665555444444444443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=6.4e-24  Score=219.08  Aligned_cols=247  Identities=25%  Similarity=0.314  Sum_probs=166.8

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCChHHH-HHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHh
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKN--NVDINTANANGLNALH-LASKDGHLHVVTELLSRGANVDSATKKGNTALHIAS   78 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~-~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~   78 (529)
                      +++.++|+.||+.|+++.|+.+++.  +.++|..|..|+|||| .|+.+++.+++++|+++|+    .+..|.||||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            3568899999999999999999998  8999999999999999 8899999999999999987    4555666666554


Q ss_pred             hcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhc--CCCCCCCcC
Q psy2356          79 LGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKVRLP  156 (529)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~--~~~~~~~~~  156 (529)
                      .+..                       .+...++..+...+....    +.             .+...  ......+.|
T Consensus        91 ~~~~-----------------------~~v~~ll~~l~~~~~~~~----~~-------------~~~~~~~~~~~~~G~T  130 (743)
T TIGR00870        91 LEYV-----------------------DAVEAILLHLLAAFRKSG----PL-------------ELANDQYTSEFTPGIT  130 (743)
T ss_pred             hccH-----------------------HHHHHHHHHHhhcccccC----ch-------------hhhccccccccCCCCc
Confidence            2110                       112233333333322110    00             00000  011123445


Q ss_pred             HHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy2356         157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR  236 (529)
Q Consensus       157 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  236 (529)
                      |||.|+..++.++++.|++.|++++........         ....+   ......|.+||+.|+..|+.+++++|+++|
T Consensus       131 pLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~---------~~~~~---~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g  198 (743)
T TIGR00870       131 ALHLAAHRQNYEIVKLLLERGASVPARACGDFF---------VKSQG---VDSFYHGESPLNAAACLGSPSIVALLSEDP  198 (743)
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchh---------hcCCC---CCcccccccHHHHHHHhCCHHHHHHHhcCC
Confidence            555555555555555555555544421110000         00000   011236789999999999999999999999


Q ss_pred             CCCcccCCCCCcHHHHHHHcC---------CHHHHHHHHHCCCC---C----CCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy2356         237 ADVNFSAKSGLTPLHVASFMG---------CMNIVIYLLQNDAN---P----DIPTVRGETPLHLAARANQTDIIRILLR  300 (529)
Q Consensus       237 ~~~~~~~~~~~~~l~~a~~~~---------~~~~v~~Ll~~g~~---~----~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  300 (529)
                      ++++..|..|+||||.|+..+         ...+.+++++.+..   .    +..|..|.||||.|+..|+.+++++|++
T Consensus       199 adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       199 ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence            999999999999999999886         22345555555443   3    5678899999999999999999999999


Q ss_pred             CCCC
Q psy2356         301 NGAQ  304 (529)
Q Consensus       301 ~g~~  304 (529)
                      .+..
T Consensus       279 ~~~~  282 (743)
T TIGR00870       279 IKYK  282 (743)
T ss_pred             HHHh
Confidence            5443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.92  E-value=1.1e-24  Score=173.11  Aligned_cols=195  Identities=25%  Similarity=0.310  Sum_probs=155.4

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356         208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA  287 (529)
Q Consensus       208 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  287 (529)
                      ..+.+|+++++.++-.++...+..++.+|...|..+.-+++|+.+++...+.+.+..+.++.  +|..|..|.|||.+|+
T Consensus        91 ~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~--VN~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   91 ETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK--VNACDEFGFTPLIWAA  168 (296)
T ss_pred             CCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc--ccCccccCchHhHHHH
Confidence            34556888999998888888888888888888888888899999999888888877777654  4778888999999999


Q ss_pred             HcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhh
Q psy2356         288 RANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKG  367 (529)
Q Consensus       288 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~  367 (529)
                      .+|+..++++|++.|++++...+...                                                      
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lgk~re------------------------------------------------------  194 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALGKYRE------------------------------------------------------  194 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhhhhhh------------------------------------------------------
Confidence            99999999999999988766544433                                                      


Q ss_pred             hhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHc
Q psy2356         368 VTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE  447 (529)
Q Consensus       368 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~  447 (529)
                                         ++|..|+..|..++|++|+..                   ++|+|..|.+|-|||.||++.
T Consensus       195 -------------------sALsLAt~ggytdiV~lLL~r-------------------~vdVNvyDwNGgTpLlyAvrg  236 (296)
T KOG0502|consen  195 -------------------SALSLATRGGYTDIVELLLTR-------------------EVDVNVYDWNGGTPLLYAVRG  236 (296)
T ss_pred             -------------------hhHhHHhcCChHHHHHHHHhc-------------------CCCcceeccCCCceeeeeecC
Confidence                               455566666666666665554                   567788888899999999999


Q ss_pred             CcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         448 GHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       448 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      ++.++++.|++.|+|++..+..|.+++..|...|+. +|+..++.-....
T Consensus       237 nhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl  285 (296)
T KOG0502|consen  237 NHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKL  285 (296)
T ss_pred             ChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887 6666655544333

>KOG4369|consensus

Probab=99.90  E-value=1.8e-24  Score=209.26  Aligned_cols=306  Identities=25%  Similarity=0.349  Sum_probs=262.4

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCC-CCCCchHHHHhhc
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSAT-KKGNTALHIASLG   80 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~-~~~~~~l~~a~~~   80 (529)
                      ++=.|+|-.||..|+-|+|+.|+.+|+++..+|+.|.+||.+|+..||..+|+.|+.+.+++..+. +.+.|+|.     
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lS-----  829 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLS-----  829 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEE-----
Confidence            455789999999999999999999999999999999999999999999999999999999997654 45566555     


Q ss_pred             CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCC------
Q psy2356          81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTR------  150 (529)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~------  150 (529)
                                           +||..|..++|+.|+.+++.    +....|||.+|...|..+++..|+..+..      
T Consensus       830 ---------------------lacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtg  888 (2131)
T KOG4369|consen  830 ---------------------LACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTG  888 (2131)
T ss_pred             ---------------------EecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccc
Confidence                                 55677788888888887665    55567888888888888888888887643      


Q ss_pred             CCCCcCHHHHHhhCCChHHHHHHHhccCCCCCC--------cccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHH
Q psy2356         151 GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPA--------SVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH  222 (529)
Q Consensus       151 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~  222 (529)
                      .+.+..||+.|..+|+.+..+.|++.|.+++..        .-++.+.++.+.+..|+........+-+.|.|||..++.
T Consensus       889 SklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~As  968 (2131)
T KOG4369|consen  889 SKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMAS  968 (2131)
T ss_pred             cccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhc
Confidence            334567888888888888888888887765543        335566688888888888888888999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCcccC--CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy2356         223 YGNEGVANILLDKRADVNFSA--KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR  300 (529)
Q Consensus       223 ~~~~~~v~~Ll~~g~~~~~~~--~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  300 (529)
                      .|.+++=+.|+..|+|++..-  ..-.|+|..++..|+...+..|+...+.++.++..|.|+|..|+--|.+..+..|++
T Consensus       969 gGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~ 1048 (2131)
T KOG4369|consen  969 GGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVS 1048 (2131)
T ss_pred             CCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhh
Confidence            999999999999999987643  234578999999999999999999889999999999999999999999999999999


Q ss_pred             CCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356         301 NGAQVDARAREGHTALSIAQKLGYISVEESLGA  333 (529)
Q Consensus       301 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  333 (529)
                      ++++++..+....+++..|.+.||+++|+|...
T Consensus      1049 ~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1049 SVADADQQDNRTNSRTMAAFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             cccChhhhhcccccccHHHHHhchhheeccccC
Confidence            999999999999999999999999999999854

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.3e-22  Score=210.30  Aligned_cols=77  Identities=22%  Similarity=0.204  Sum_probs=63.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC-CcHHHHHHHc
Q psy2356         213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG-ETPLHLAARA  289 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~l~~a~~~  289 (529)
                      +.++||.|+..|+.++++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++..+..| .+|...+...
T Consensus       622 ~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        622 AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            4578888888888888888888888888888888888888888888888888888888888888777 7887776543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=1.1e-22  Score=210.01  Aligned_cols=230  Identities=25%  Similarity=0.285  Sum_probs=177.5

Q ss_pred             CCCChHHHHHHHcCChhHHHHHHHC--CCCCCCCCCCCCchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHH
Q psy2356          35 ANGLNALHLASKDGHLHVVTELLSR--GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVV  112 (529)
Q Consensus        35 ~~g~t~L~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v  112 (529)
                      ..++.+++.|+..|+.+.++.+++.  +.+++..|..|.||||+                         .|+.+++.+++
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~-------------------------~A~~~~~~eiv   69 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFV-------------------------AAIENENLELT   69 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHH-------------------------HHHhcChHHHH
Confidence            3567899999999999999999999  77877666665555442                         56889999999


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHcC---cHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccc
Q psy2356         113 AVLLENDTRGKDGFTPLAVAMQQG---HDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSST  189 (529)
Q Consensus       113 ~~Ll~~~~~~~~~~~~l~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  189 (529)
                      +.|++.+..+..|.||||.|+..+   ...+++++........    +.             .+..              
T Consensus        70 ~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~----~~-------------~~~~--------------  118 (743)
T TIGR00870        70 ELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSG----PL-------------ELAN--------------  118 (743)
T ss_pred             HHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccC----ch-------------hhhc--------------
Confidence            999999987788999999998732   2233333332221110    00             0000              


Q ss_pred             cCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccC--------------CCCCcHHHHHHH
Q psy2356         190 TGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSA--------------KSGLTPLHVASF  255 (529)
Q Consensus       190 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------~~~~~~l~~a~~  255 (529)
                                    .........|.||||.|+..|+.+++++|+++|++++..+              ..|.+||+.|+.
T Consensus       119 --------------~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~  184 (743)
T TIGR00870       119 --------------DQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAAC  184 (743)
T ss_pred             --------------cccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHH
Confidence                          0001123468999999999999999999999999998653              258899999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC---------CHHHHHHHHHCCCCc-------ccccccCCcHHHHH
Q psy2356         256 MGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN---------QTDIIRILLRNGAQV-------DARAREGHTALSIA  319 (529)
Q Consensus       256 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~---------~~~~~~~Ll~~g~~~-------~~~~~~g~t~l~~a  319 (529)
                      .++.+++++|+++|++++..|..|+||||.|+..+         ...+.+++++.+...       +..|..|.||+++|
T Consensus       185 ~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A  264 (743)
T TIGR00870       185 LGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLA  264 (743)
T ss_pred             hCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhh
Confidence            99999999999999999999999999999999886         234556666655443       56789999999999


Q ss_pred             HHcCChhHHHHhhhh
Q psy2356         320 QKLGYISVEESLGAA  334 (529)
Q Consensus       320 ~~~~~~~~~~~l~~~  334 (529)
                      +..|+.++++.+++.
T Consensus       265 ~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       265 AKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhcCCccHHHHHHHH
Confidence            999999999999874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.90  E-value=2.8e-23  Score=187.74  Aligned_cols=233  Identities=30%  Similarity=0.407  Sum_probs=191.0

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy2356         215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI  294 (529)
Q Consensus       215 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  294 (529)
                      -.+.-|+..++.+-+..|+..|+.++..+.+|.|++|.+|.-.+.++|++|+++|++++..|..++||+|.|+..|+..+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHH
Q psy2356         295 IRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLII  374 (529)
Q Consensus       295 ~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~  374 (529)
                      +++|+.+|+++...+..|..|...+......+++..-......+           +..+-....   -..+.+....+.-
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~-----------iea~R~~~e---~~ml~D~~q~l~~  187 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID-----------IEAARKAEE---QTMLDDARQWLNA  187 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc-----------HHHHhhhhH---HHHHHHHHHHHhc
Confidence            99999999999999999999988876666656555554333332           111111111   1222233333333


Q ss_pred             hhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHH
Q psy2356         375 AKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSA  454 (529)
Q Consensus       375 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  454 (529)
                      ..........|-|.||.|+.+|..++.++|+++                   |.+++.+|.+|+||||.|+..|..++.+
T Consensus       188 G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a-------------------g~~~~~~D~dgWtPlHAAA~Wg~~~~~e  248 (527)
T KOG0505|consen  188 GAELDARHARGATALHVAAANGYTEVAALLLQA-------------------GYSVNIKDYDGWTPLHAAAHWGQEDACE  248 (527)
T ss_pred             cccccccccccchHHHHHHhhhHHHHHHHHHHh-------------------ccCcccccccCCCcccHHHHhhhHhHHH
Confidence            333355555599999999999999998888876                   5567899999999999999999999999


Q ss_pred             HHHhCCCCCcchhhcCCCHHHHHHHh
Q psy2356         455 MLLEHGADVSHAAKEGHTALSIAQKL  480 (529)
Q Consensus       455 ~Ll~~g~~~~~~~~~g~t~l~~A~~~  480 (529)
                      +|+++|++.+.....|.||+.+|...
T Consensus       249 lL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  249 LLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHHhhcccchhhhcCCCCccchhhh
Confidence            99999999999999999999999763

>KOG0507|consensus

Probab=99.90  E-value=2.5e-23  Score=194.93  Aligned_cols=244  Identities=27%  Similarity=0.328  Sum_probs=196.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCC-------------CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Q psy2356         215 TPLHIASHYGNEGVANILLDKR-------------ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET  281 (529)
Q Consensus       215 t~l~~A~~~~~~~~v~~Ll~~g-------------~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  281 (529)
                      +-+.-|+..|+.+.+..|++..             .+.+..|.+|.|+||.|+.+|+.++++.|++..+-++..+..|.+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            3466789999999999999852             235667778899999999999999999999988888888888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhH
Q psy2356         282 PLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV  361 (529)
Q Consensus       282 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  361 (529)
                      |||+|+..|+.++++.++.++..+|..+..|.||+|.|+..||.+++.+|+... .+                       
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~-ad-----------------------  140 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKN-AD-----------------------  140 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcC-CC-----------------------
Confidence            999999999999999999988888888888888888888888888888885432 22                       


Q ss_pred             HHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHH
Q psy2356         362 EESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPL  441 (529)
Q Consensus       362 ~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L  441 (529)
                                      .-+.+..+.|+|..|++.|..++++.|+.....         +.++.-.|  ...++..+-+||
T Consensus       141 ----------------p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~---------~~~~~~~~--~~~~~~~~~~pl  193 (854)
T KOG0507|consen  141 ----------------PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFP---------VQSSLRVG--DIKRPFPAIYPL  193 (854)
T ss_pred             ----------------ccccCcccccHHHHHHHhhhhHHHHHHhhhccc---------hhhcccCC--CCCCCCCCcCCc
Confidence                            234455566666677777777777777765211         11122223  455677789999


Q ss_pred             HHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhccCCCCccccch
Q psy2356         442 HLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVA  510 (529)
Q Consensus       442 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  510 (529)
                      |.|+++|+.++++.|++.|.|++.....| |+||.|+..|..++|.+|++.+-+--+.++.+++++...
T Consensus       194 Hlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil  261 (854)
T KOG0507|consen  194 HLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDII  261 (854)
T ss_pred             chhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHH
Confidence            99999999999999999999999877766 899999999999999999999999999999999887765

>KOG0505|consensus

Probab=99.89  E-value=3e-22  Score=181.16  Aligned_cols=228  Identities=30%  Similarity=0.422  Sum_probs=174.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcccc
Q psy2356           6 TSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVP   85 (529)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~   85 (529)
                      ..+..||..|+.+-|+.|+..|++++..+.+|.|+||-+|...+.+||++|+++|++++..+..++||+|          
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlh----------  111 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLH----------  111 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcch----------
Confidence            3578899999999999999999999999999999999999999999999999999999988887777666          


Q ss_pred             ccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHH
Q psy2356          86 VWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIA  161 (529)
Q Consensus        86 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a  161 (529)
                                      .|+.+|+..++++|+++++.    +..+..|...+......+++.........+      +..+
T Consensus       112 ----------------aaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~------iea~  169 (527)
T KOG0505|consen  112 ----------------AAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID------IEAA  169 (527)
T ss_pred             ----------------hhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc------HHHH
Confidence                            55778999999999999877    566677777766665555554443321110      1111


Q ss_pred             hhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcc
Q psy2356         162 AKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNF  241 (529)
Q Consensus       162 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  241 (529)
                      -......+++                      ++.+|+. .|...+.....|.|+||.|+..|..++.++|++.|.+++.
T Consensus       170 R~~~e~~ml~----------------------D~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~  226 (527)
T KOG0505|consen  170 RKAEEQTMLD----------------------DARQWLN-AGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI  226 (527)
T ss_pred             hhhhHHHHHH----------------------HHHHHHh-ccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc
Confidence            1111111111                      1222333 5666666666688888888888888888888888888888


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2356         242 SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAAR  288 (529)
Q Consensus       242 ~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~  288 (529)
                      +|.+||+|||.|+..|..++.++|+++|++.+.....|.+|+..|..
T Consensus       227 ~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  227 KDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            88888888888888888888888888888888888888888877754

>KOG0514|consensus

Probab=99.87  E-value=2.4e-22  Score=172.31  Aligned_cols=164  Identities=27%  Similarity=0.323  Sum_probs=116.7

Q ss_pred             ccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHh-----CchhHHHHhhhhhhHHHHhhcCCC
Q psy2356         306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKL-----GYISVEESLKGVTETLIIAKGDGE  380 (529)
Q Consensus       306 ~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~l~~~~~~~~~~~~~~~  380 (529)
                      |..|.+|+|+|||++..+++++|+.|+....++++..+.-|.||+.+++..     .+.+++..|....+.      .-.
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV------NaK  335 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV------NAK  335 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc------chh
Confidence            334555555555555555555555555555555555555555555554432     223344433111111      111


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhC-
Q psy2356         381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH-  459 (529)
Q Consensus       381 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-  459 (529)
                      -..-|+|+|++|+..|+.++|+.||..                   |+|+|.+|.+|-|+||+|+.+|+.|||++||.. 
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLac-------------------gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLAC-------------------GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHc-------------------cCCCccccCCccHHHhhhhhhChHHHHHHHhccC
Confidence            234589999999999999998888875                   677899999999999999999999999999976 


Q ss_pred             CCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356         460 GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE  494 (529)
Q Consensus       460 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  494 (529)
                      ++|+..+|.+|-|+|.+|.+.||.+|.-+|-.+..
T Consensus       397 ~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n  431 (452)
T KOG0514|consen  397 SCDISLTDVDGSTALSIALEAGHREIAVMLYAHMN  431 (452)
T ss_pred             cccceeecCCCchhhhhHHhcCchHHHHHHHHHHH
Confidence            89999999999999999999999999988866543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=5.6e-21  Score=157.76  Aligned_cols=83  Identities=25%  Similarity=0.226  Sum_probs=62.4

Q ss_pred             HHHcCCCCCCcc-cCCCCHHHHHHHcCcHHHHHHHHh-CCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhcc
Q psy2356         423 LLEYGAKPNAES-VAGFTPLHLSASEGHADMSAMLLE-HGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAK  500 (529)
Q Consensus       423 L~~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  500 (529)
                      |++.|+++|.++ ..|+||||+|+.+|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+.++.+...++
T Consensus        79 Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  158 (166)
T PHA02743         79 LVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPL  158 (166)
T ss_pred             HHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence            334456667776 468888888888888888888884 688888888888888888888888888888888887777666


Q ss_pred             CCCCc
Q psy2356         501 GDGEK  505 (529)
Q Consensus       501 ~~~~~  505 (529)
                      ..|.+
T Consensus       159 ~~~~~  163 (166)
T PHA02743        159 SIGLS  163 (166)
T ss_pred             cCCcc
Confidence            65544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1e-20  Score=156.25  Aligned_cols=147  Identities=18%  Similarity=0.208  Sum_probs=96.1

Q ss_pred             CCCCCcccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHHCCCCccc
Q psy2356         235 KRADVNFSAKSGLTPLHVASFMGCM----NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI---IRILLRNGAQVDA  307 (529)
Q Consensus       235 ~g~~~~~~~~~~~~~l~~a~~~~~~----~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~---~~~Ll~~g~~~~~  307 (529)
                      +|++++..+..+.++++.|+..|+.    +++++|++.|..++..+..|+||||+|+..|+.++   +++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            3444555555566666666666665    44445556666666666666666666666655433   5666666666655


Q ss_pred             ccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCch
Q psy2356         308 RAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLT  387 (529)
Q Consensus       308 ~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t  387 (529)
                      ++.                                                                        ..|.|
T Consensus        89 ~d~------------------------------------------------------------------------~~g~T   96 (166)
T PHA02743         89 REL------------------------------------------------------------------------GTGNT   96 (166)
T ss_pred             CCC------------------------------------------------------------------------CCCCc
Confidence            432                                                                        13445


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchh
Q psy2356         388 PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAA  467 (529)
Q Consensus       388 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  467 (529)
                      |||+|+..++.+++++|+.                  +.|++++.++..|.||||+|+..++.+++++|+++|++++.++
T Consensus        97 pLh~A~~~g~~~iv~~Ll~------------------~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  158 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCR------------------QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPL  158 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHh------------------ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence            5555556666666555553                  1356677788889999999999999999999999999998877


Q ss_pred             hcCC
Q psy2356         468 KEGH  471 (529)
Q Consensus       468 ~~g~  471 (529)
                      ..|.
T Consensus       159 ~~~~  162 (166)
T PHA02743        159 SIGL  162 (166)
T ss_pred             cCCc
Confidence            6654

>KOG0514|consensus

Probab=99.85  E-value=9.4e-21  Score=162.57  Aligned_cols=162  Identities=29%  Similarity=0.379  Sum_probs=145.8

Q ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCCCCCC-CCC
Q psy2356         207 DVTSKSGFTPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFM-----GCMNIVIYLLQNDANPDIPT-VRG  279 (529)
Q Consensus       207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~l~~a~~~-----~~~~~v~~Ll~~g~~~~~~~-~~~  279 (529)
                      |+.|.+|+|+|||++.+.++++|+.|++.| ++++..+.-|.||++.++..     .+.++|..|.+.| ++|.+- ..|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhc
Confidence            577889999999999999999999999987 78999999999999988743     3677888888776 456543 358


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCch
Q psy2356         280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI  359 (529)
Q Consensus       280 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  359 (529)
                      +|+|+.|+.+|+.++++.|+..|+|+|.+|.+|.|+|+.|+..||.++++.|+....++...+|.+|.|+|.+|...|+.
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhhh
Q psy2356         360 SVEESLKGVT  369 (529)
Q Consensus       360 ~~~~~l~~~~  369 (529)
                      ++--.|....
T Consensus       421 eIa~mlYa~~  430 (452)
T KOG0514|consen  421 EIAVMLYAHM  430 (452)
T ss_pred             HHHHHHHHHH
Confidence            9877664443

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=3.1e-20  Score=154.35  Aligned_cols=141  Identities=21%  Similarity=0.306  Sum_probs=103.8

Q ss_pred             ccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHH
Q psy2356         340 KKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDI  419 (529)
Q Consensus       340 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  419 (529)
                      ...+..|.||||+|+..|+.++++.+.............+..+..|.||||+|+..|+.+++.               ++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~---------------~i   79 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAA---------------EI   79 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHH---------------HH
Confidence            344455566666666666666655543211000011223567778999999999998853321               33


Q ss_pred             HHHHHHcCCCCCCccc-CCCCHHHHHHHcCcHHHHHHHHh-CCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccch
Q psy2356         420 ATTLLEYGAKPNAESV-AGFTPLHLSASEGHADMSAMLLE-HGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTET  495 (529)
Q Consensus       420 ~~~L~~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  495 (529)
                      +++|++.|++++.++. .|+||||+|+..++.+++++|++ .|++++..|..|.|||++|...++.+++++|+++...
T Consensus        80 i~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         80 IDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             HHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3445556777888875 89999999999999999999998 5999999999999999999999999999999998765

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1.9e-19  Score=149.61  Aligned_cols=128  Identities=19%  Similarity=0.222  Sum_probs=113.5

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCCC
Q psy2356         208 VTSKSGFTPLHIASHYGNEGVANILLD------KRADVNFSAKSGLTPLHVASFMGC----MNIVIYLLQNDANPDIPTV  277 (529)
Q Consensus       208 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~~~~~l~~a~~~~~----~~~v~~Ll~~g~~~~~~~~  277 (529)
                      .++..|.|+||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|++.|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            456688999999999999999998854      357788899999999999999998    5889999999999999885


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHH-CCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356         278 -RGETPLHLAARANQTDIIRILLR-NGAQVDARAREGHTALSIAQKLGYISVEESLGAAE  335 (529)
Q Consensus       278 -~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  335 (529)
                       .|.||||+|+..++.+++++|++ .|++++..+..|.||+++|+..++.+++++|.+..
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence             89999999999999999999997 59999999999999999999999999999996544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=5.5e-19  Score=156.80  Aligned_cols=148  Identities=16%  Similarity=0.083  Sum_probs=120.0

Q ss_pred             CCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCcccC----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcH
Q psy2356         209 TSKSG-FTPLHIASHYGNEGVANILLDKRADVNFSA----KSGLTPLHVASFMGCMNIVIYLLQNDANPDIP-TVRGETP  282 (529)
Q Consensus       209 ~~~~~-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~----~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~-~~~~~t~  282 (529)
                      ++..+ .++|+.|+..|+.+++++|+++|++++..+    ..|.||||+|+..++.+++++|+++|++++.. +..|.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            33344 457777888899999999999999999874    58999999999999999999999999999986 4579999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHH
Q psy2356         283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVE  362 (529)
Q Consensus       283 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  362 (529)
                      ||.|+..++.+++++|+++|++++..+..|.||+++|+..++.+++..+..      ...+..+.+|.+++   ++.+++
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh---ccHHHH
Confidence            999999999999999999999999999999999999999888887655532      11344445555543   234454


Q ss_pred             HHh
Q psy2356         363 ESL  365 (529)
Q Consensus       363 ~~l  365 (529)
                      +.+
T Consensus       179 ~~L  181 (300)
T PHA02884        179 KIL  181 (300)
T ss_pred             HHH
Confidence            444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=1.2e-18  Score=154.59  Aligned_cols=145  Identities=19%  Similarity=0.178  Sum_probs=119.2

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCCCCCC----CCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhc
Q psy2356           5 HTSFLRAARAGHLDKIIEHLKNNVDINTAN----ANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG   80 (529)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~----~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~   80 (529)
                      .++||.|++.|+.+++++|++.|++++..+    ..|.||||+|+..|+.+++++|+++||+++..+.            
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~------------  101 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE------------  101 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC------------
Confidence            457888888899999999999999999874    5899999999999999999999999999997532            


Q ss_pred             CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcC
Q psy2356          81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLP  156 (529)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  156 (529)
                                   ..|.||||.|+..++.+++++|++.|++    +..|.|||+.|+..++.+++..+.... ......+
T Consensus       102 -------------~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-~~~~~~~  167 (300)
T PHA02884        102 -------------EAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE-ISNFYKH  167 (300)
T ss_pred             -------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-ccccccC
Confidence                         1245566677889999999999999877    678999999999999999887766543 3444456


Q ss_pred             HHHHHhhCCChHHHHHHHhccC
Q psy2356         157 ALHIAAKKDDTKAAKLLLEVSC  178 (529)
Q Consensus       157 ~l~~a~~~~~~~~~~~ll~~~~  178 (529)
                      |..++   ++.++++.|+.++.
T Consensus       168 ~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        168 PKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             hhhhh---ccHHHHHHHHHHHH
Confidence            66654   36889999987654

>KOG0512|consensus

Probab=99.80  E-value=9.3e-19  Score=134.13  Aligned_cols=144  Identities=29%  Similarity=0.304  Sum_probs=130.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy2356         215 TPLHIASHYGNEGVANILLDKRAD-VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD  293 (529)
Q Consensus       215 t~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  293 (529)
                      ..+.+|+..+.+..|+.|++..++ +|.+|.++.||||.|+++|+.+|++.|+..|++++.+...|+||||.||+-.+.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            356789999999999999998776 7999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCcccccccCCcHHHHHHHcCCh-hHHHHhhhhcccccccCCCCCCcHHHHHHHhCc
Q psy2356         294 IIRILLRNGAQVDARAREGHTALSIAQKLGYI-SVEESLGAAERSQLKKRGREGHTALSIAQKLGY  358 (529)
Q Consensus       294 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  358 (529)
                      ++-.|+++|+|+|.......||||.|+...+. ..+.+|+..........+..+.||+.+|-+.+-
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            99999999999999999999999999987665 567788888888888888889999998876543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=3.7e-19  Score=145.96  Aligned_cols=139  Identities=17%  Similarity=0.191  Sum_probs=103.2

Q ss_pred             cccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHH--hhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCch
Q psy2356         339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLII--AKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK  416 (529)
Q Consensus       339 ~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  416 (529)
                      .+..+..|.||||+|+..|+...+...   ......  .......+..|.||||+|+..|+.+.+               
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~---~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~---------------   71 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAF---KNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQ---------------   71 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHH---HHHhcchhHHHHHHhcCCCCEEEEeecccCchhHH---------------
Confidence            355667778888888887763211111   000000  000123577899999999999987532               


Q ss_pred             hHHHHHHHHcCCCCCCcc-cCCCCHHHHHHHcCcHHHHHHHHhC-CCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356         417 MDIATTLLEYGAKPNAES-VAGFTPLHLSASEGHADMSAMLLEH-GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE  494 (529)
Q Consensus       417 ~~~~~~L~~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  494 (529)
                       +++++|++.|++++.++ ..|+||||+|+..|+.+++++|+++ |++++..|..|.|||++|+..|+.+++++|+..++
T Consensus        72 -e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         72 -EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             -HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence             23344455677788887 4899999999999999999999984 99999999999999999999999999999999887


Q ss_pred             hh
Q psy2356         495 TL  496 (529)
Q Consensus       495 ~~  496 (529)
                      +.
T Consensus       151 ~~  152 (154)
T PHA02736        151 QC  152 (154)
T ss_pred             CC
Confidence            54

>KOG0512|consensus

Probab=99.75  E-value=2.4e-17  Score=126.46  Aligned_cols=143  Identities=28%  Similarity=0.343  Sum_probs=126.2

Q ss_pred             CHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy2356         156 PALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK  235 (529)
Q Consensus       156 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  235 (529)
                      ..+.+|+..+....|+.|++                         .....+|.+|.+++||||.|+.+|+.++++.|+..
T Consensus        65 rl~lwaae~nrl~eV~~lL~-------------------------e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~  119 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLS-------------------------EKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS  119 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHH-------------------------hccccccccccccccHHHHHHhcCchHHHHHHHHc
Confidence            45678899999999999987                         33345688999999999999999999999999999


Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHHH-CCCCcccccccCC
Q psy2356         236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT-DIIRILLR-NGAQVDARAREGH  313 (529)
Q Consensus       236 g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll~-~g~~~~~~~~~g~  313 (529)
                      |++++.+...||||||.||..++.+++.+|+.+|++++.......||||.|+...+. ..+.+|+. .++.+...+..+.
T Consensus       120 gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~ee  199 (228)
T KOG0512|consen  120 GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEE  199 (228)
T ss_pred             cCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccc
Confidence            999999999999999999999999999999999999999999999999999987654 45666654 6788888889999


Q ss_pred             cHHHHHHHcC
Q psy2356         314 TALSIAQKLG  323 (529)
Q Consensus       314 t~l~~a~~~~  323 (529)
                      ||+.+|.+-+
T Consensus       200 ta~~iARRT~  209 (228)
T KOG0512|consen  200 TAFDIARRTS  209 (228)
T ss_pred             hHHHHHHHhh
Confidence            9999997754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=8.7e-18  Score=137.85  Aligned_cols=127  Identities=21%  Similarity=0.178  Sum_probs=106.4

Q ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHhCCC--C-----CcccCCCCCcHHHHHHHcCCH---HHHHHHHHCCCCCCCCC
Q psy2356         207 DVTSKSGFTPLHIASHYGNEGVANILLDKRA--D-----VNFSAKSGLTPLHVASFMGCM---NIVIYLLQNDANPDIPT  276 (529)
Q Consensus       207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~--~-----~~~~~~~~~~~l~~a~~~~~~---~~v~~Ll~~g~~~~~~~  276 (529)
                      +..+..|.||||+|+..|+..  .++...+.  +     ++..+..|.||||+|+..++.   +++++|++.|++++.++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            456678999999999999843  33222211  1     234678899999999999986   46889999999999998


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHH-CCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356         277 -VRGETPLHLAARANQTDIIRILLR-NGAQVDARAREGHTALSIAQKLGYISVEESLGAAE  335 (529)
Q Consensus       277 -~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  335 (529)
                       ..|.||||+|+..++.+++++|++ .|++++..+..|.||+|+|+..|+.+++++|+...
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence             489999999999999999999998 49999999999999999999999999999997543

>KOG3676|consensus

Probab=99.74  E-value=3.8e-17  Score=156.01  Aligned_cols=212  Identities=26%  Similarity=0.285  Sum_probs=161.6

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCC---------CCCcccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCC-CC----C
Q psy2356         212 SGFTPLHIASHYGNEGVANILLDKR---------ADVNFSAKSGLTPLHVASFM---GCMNIVIYLLQNDAN-PD----I  274 (529)
Q Consensus       212 ~~~t~l~~A~~~~~~~~v~~Ll~~g---------~~~~~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~-~~----~  274 (529)
                      ..+.++..|...+..+.+.-++..+         .+++.+..-|.|.||.|+.+   ++.++++.|++.-.. +|    .
T Consensus       100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~  179 (782)
T KOG3676|consen  100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTS  179 (782)
T ss_pred             cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhh
Confidence            3346777888888887777776654         55666677899999999864   456888888875321 11    1


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHH
Q psy2356         275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ  354 (529)
Q Consensus       275 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  354 (529)
                      ..-.|+|+||.|+.+.+.++|++|++.|+|++.+....                         .+...+..+..      
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~-------------------------FF~~~dqk~~r------  228 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGA-------------------------FFCPDDQKASR------  228 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcc-------------------------ccCcccccccc------
Confidence            22359999999999999999999999999998754210                         00111100000      


Q ss_pred             HhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcc
Q psy2356         355 KLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES  434 (529)
Q Consensus       355 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~  434 (529)
                                         ...+..-.-..|..||-+|+..++.+++++|+++                   |+|++++|
T Consensus       229 -------------------k~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~-------------------gAd~~aqD  270 (782)
T KOG3676|consen  229 -------------------KSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH-------------------GADPNAQD  270 (782)
T ss_pred             -------------------cccCCcceeeeccCchHHHHHcCCHHHHHHHHhc-------------------CCCCCccc
Confidence                               0000000123578999999999999998888876                   66789999


Q ss_pred             cCCCCHHHHHHHcCcHHHHHHHHhCCCC--CcchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356         435 VAGFTPLHLSASEGHADMSAMLLEHGAD--VSHAAKEGHTALSIAQKLGYISVEESLKGV  492 (529)
Q Consensus       435 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  492 (529)
                      ..|+|.||..+..-..+|..+++++|++  ..++|..|.|||.+|++.|+.+|.+.+++.
T Consensus       271 S~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  271 SNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999999999  999999999999999999999999999998

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=5.9e-17  Score=119.28  Aligned_cols=89  Identities=42%  Similarity=0.624  Sum_probs=80.3

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy2356         217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR  296 (529)
Q Consensus       217 l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  296 (529)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.+|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            6899999999999999999888776    788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCccccc
Q psy2356         297 ILLRNGAQVDARA  309 (529)
Q Consensus       297 ~Ll~~g~~~~~~~  309 (529)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999988754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=1e-16  Score=118.07  Aligned_cols=88  Identities=33%  Similarity=0.525  Sum_probs=78.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhh
Q psy2356         389 LHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAK  468 (529)
Q Consensus       389 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  468 (529)
                      ||+|+..|+.+++++|++.+.++                   +.    |.||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-------------------~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-------------------NL----GNTALHYAAENGNLEIVKLLLENGADINSQDK   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-------------------TS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-------------------CC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCC
Confidence            78999999999999999976543                   33    88999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHhCCchHHHHhhcccchhhhc
Q psy2356         469 EGHTALSIAQKLGYISVEESLKGVTETLIIA  499 (529)
Q Consensus       469 ~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~  499 (529)
                      .|+|||++|+..|+.+++++|++++.++...
T Consensus        58 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   58 NGNTALHYAAENGNLEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             TSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999999998887643

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=1.2e-15  Score=121.39  Aligned_cols=123  Identities=41%  Similarity=0.659  Sum_probs=115.1

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2356         209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAAR  288 (529)
Q Consensus       209 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~  288 (529)
                      .+..|.|||++|+..++.+++++|++.+.+.+..+..|.+|++.|+..++.+++++|++.|..++..+..+.||+|.|++
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            34678999999999999999999999999888889999999999999999999999999998888888999999999999


Q ss_pred             cCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHh
Q psy2356         289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL  331 (529)
Q Consensus       289 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  331 (529)
                      .++.+++++|++++.+.+..+..+.||++.|...++.+++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            9999999999999999999999999999999999999999887

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676|consensus

Probab=99.68  E-value=6.3e-16  Score=147.82  Aligned_cols=178  Identities=25%  Similarity=0.289  Sum_probs=103.0

Q ss_pred             ccCCCCCHHHHHHH---cCcHHHHHHHhhcCCC---------CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHH
Q psy2356          92 KQGDGFTPLAVAMQ---QGHDKVVAVLLENDTR---------GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALH  159 (529)
Q Consensus        92 ~~~~~~~~l~~A~~---~~~~~~v~~Ll~~~~~---------~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~  159 (529)
                      +...|.|+||.|.-   .++.++++.|++..+.         ...|.||||+|+.+.+.++|++|++.+++....     
T Consensus       139 RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR-----  213 (782)
T KOG3676|consen  139 RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR-----  213 (782)
T ss_pred             ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH-----
Confidence            34455666666654   4566888888886433         556788888888888888888888877663311     


Q ss_pred             HHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Q psy2356         160 IAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV  239 (529)
Q Consensus       160 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  239 (529)
                        |.             |.-+.+......            ....+..-.-..|..||..|+..++.+++++|+++|+|+
T Consensus       214 --a~-------------G~FF~~~dqk~~------------rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~  266 (782)
T KOG3676|consen  214 --AC-------------GAFFCPDDQKAS------------RKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP  266 (782)
T ss_pred             --hh-------------ccccCccccccc------------ccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC
Confidence              10             000000000000            000111112234566666666666666666666666666


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy2356         240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN--PDIPTVRGETPLHLAARANQTDIIRILLRN  301 (529)
Q Consensus       240 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  301 (529)
                      +..|..|+|.||..+..-..++...+++.|++  ...++..|-|||..|++-|+.++++.+++.
T Consensus       267 ~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  267 NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            66666666666666666666666666666665  555666666666666666666666666665

>KOG0195|consensus

Probab=99.66  E-value=2.6e-16  Score=131.15  Aligned_cols=122  Identities=34%  Similarity=0.481  Sum_probs=116.6

Q ss_pred             HHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy2356         198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV  277 (529)
Q Consensus       198 ~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~  277 (529)
                      ||-+...+.|.-|..|.+|||+|++.|+..+++.|+..|+.+|..+....||||.|+..|+-++|+.|++..+++|..+.
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavne   98 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNE   98 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhc
Confidence            45567778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHH
Q psy2356         278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA  319 (529)
Q Consensus       278 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  319 (529)
                      .|+|||||||.-|...+.+-|+..|+.++..+++|.||+..|
T Consensus        99 hgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   99 HGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             cCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            999999999999999999999999999999999999999876

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=4.3e-15  Score=118.15  Aligned_cols=118  Identities=43%  Similarity=0.682  Sum_probs=104.1

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      .+|.||||.|++.|+.+++++|++.+.+.+..+..|.||+|+|+..++.+++++|++.|++++..+..            
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~------------   72 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD------------   72 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCC------------
Confidence            57999999999999999999999999888899999999999999999999999999999877655443            


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCC----CCCCCCcHHHHHHHcCcHHHHHHHH
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDT----RGKDGFTPLAVAMQQGHDKVVAVLL  145 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~l~~A~~~~~~~~v~~Ll  145 (529)
                                    +.+|+++|+..++.+++++|++.+.    .+..+.+|++.|+..++.+++++|+
T Consensus        73 --------------~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          73 --------------GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             --------------CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                          4566777789999999999999753    3677889999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.64  E-value=1.2e-15  Score=103.86  Aligned_cols=97  Identities=29%  Similarity=0.478  Sum_probs=83.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcccc
Q psy2356           6 TSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVP   85 (529)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~   85 (529)
                      -.+.+++++|.++.|+..+..|.++|..- .|++|||||+-.|+++++++|+..||+++.+|+.|-||            
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITP------------   70 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITP------------   70 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcH------------
Confidence            46788999999999999999998888654 89999999999999999999999999999887776555            


Q ss_pred             ccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHH
Q psy2356          86 VWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPL  129 (529)
Q Consensus        86 ~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l  129 (529)
                                    |-.|+..||.++|++|++.|++    ..+|.+.+
T Consensus        71 --------------LLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   71 --------------LLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             --------------HHHHHHHhhHHHHHHHHHcCcccceeCCCchhHH
Confidence                          5566899999999999999887    34454443

>KOG0195|consensus

Probab=99.58  E-value=1.2e-14  Score=121.45  Aligned_cols=130  Identities=30%  Similarity=0.414  Sum_probs=98.4

Q ss_pred             CCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHH
Q psy2356         152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI  231 (529)
Q Consensus       152 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~  231 (529)
                      ..+++|||+|++.|+..+++.|+                          ..|..+|..+.-..||||.|+.+|+.++|+.
T Consensus        32 dhgfsplhwaakegh~aivemll--------------------------~rgarvn~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen   32 DHGFSPLHWAAKEGHVAIVEMLL--------------------------SRGARVNSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             ccCcchhhhhhhcccHHHHHHHH--------------------------hcccccccccCCCCcchhhhhhcccHHHHHH
Confidence            34455666666666666666665                          3344455666666899999999999999999


Q ss_pred             HHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc
Q psy2356         232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA  307 (529)
Q Consensus       232 Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  307 (529)
                      |++..+++|..+..|.||||+||..|.-.+.+-|+..|+.+++.+.+|.|||..|--.-.-.+.+.--++|..++.
T Consensus        86 ll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   86 LLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999877322111222222235666553

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.56  E-value=9e-15  Score=95.25  Aligned_cols=54  Identities=37%  Similarity=0.605  Sum_probs=46.9

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHH
Q psy2356           4 GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELL   57 (529)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll   57 (529)
                      |+|+||.||+.|+.+++++|++.|.+++..|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999999999999996

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=8.2e-15  Score=95.70  Aligned_cols=55  Identities=45%  Similarity=0.658  Sum_probs=33.6

Q ss_pred             HHHcC-CCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHH
Q psy2356         423 LLEYG-AKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA  477 (529)
Q Consensus       423 L~~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  477 (529)
                      |++.| .+++.+|..|+||||+|+.+|+.++|++|+++|++++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45667 89999999999999999999999999999999999999999999999997

>KOG4214|consensus

Probab=99.52  E-value=8.1e-14  Score=95.01  Aligned_cols=102  Identities=26%  Similarity=0.338  Sum_probs=88.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy2356         216 PLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII  295 (529)
Q Consensus       216 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  295 (529)
                      .+.+++++|..+-|+..+..|.++|..- .|++|||+|+..|..+++.||+..|++++.+|..|.|||..|+..|+.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4667888999999999888887777554 688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCcccccccCCcHHHH
Q psy2356         296 RILLRNGAQVDARAREGHTALSI  318 (529)
Q Consensus       296 ~~Ll~~g~~~~~~~~~g~t~l~~  318 (529)
                      ++|++.|++......+|.+.+..
T Consensus        84 klLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhh
Confidence            99999999988888888766543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=3.5e-14  Score=92.74  Aligned_cols=55  Identities=38%  Similarity=0.579  Sum_probs=33.2

Q ss_pred             HHHcC-CCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHH
Q psy2356          23 HLKNN-VDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIA   77 (529)
Q Consensus        23 ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a   77 (529)
                      |++.| .+++..|..|+||||+||..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 88999999999999999999999999999999999999999999999986

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=8e-14  Score=90.76  Aligned_cols=54  Identities=41%  Similarity=0.643  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhh
Q psy2356         437 GFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK  490 (529)
Q Consensus       437 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  490 (529)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999985

...

>KOG1710|consensus

Probab=99.44  E-value=1.3e-12  Score=109.31  Aligned_cols=101  Identities=24%  Similarity=0.350  Sum_probs=90.8

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHh
Q psy2356         379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE  458 (529)
Q Consensus       379 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  458 (529)
                      +..|.+|+++|..|+..|+.++++.|++.|+|+|                  ..++..++||||+|+.+|+.++.++|++
T Consensus        39 n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN------------------~~qhg~~YTpLmFAALSGn~dvcrllld  100 (396)
T KOG1710|consen   39 NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN------------------DKQHGTLYTPLMFAALSGNQDVCRLLLD  100 (396)
T ss_pred             hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC------------------cccccccccHHHHHHHcCCchHHHHHHh
Confidence            6788999999999999999999999999877665                  2345568999999999999999999999


Q ss_pred             CCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         459 HGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       459 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      .|+.....|+-|+|+-..|+.-|+.++|..+-.+-+.-.
T Consensus       101 aGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t~~~  139 (396)
T KOG1710|consen  101 AGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHITIDV  139 (396)
T ss_pred             ccCccccccchhhhHHHHHHHhcchHHHHHHhccccHHH
Confidence            999999999999999999999999999999977766443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.40  E-value=5.4e-12  Score=112.33  Aligned_cols=128  Identities=35%  Similarity=0.492  Sum_probs=118.3

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCCCCCCCC
Q psy2356         208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC-----MNIVIYLLQNDA---NPDIPTVRG  279 (529)
Q Consensus       208 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~-----~~~v~~Ll~~g~---~~~~~~~~~  279 (529)
                      ..+..+.++++.++..+..+.+++++..|++++..+..|.||++.|+..++     .+++++|++.|.   ..+..+..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            344567899999999999999999999999999999999999999999999     999999999999   666679999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356         280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAE  335 (529)
Q Consensus       280 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  335 (529)
                      .||||+|+..|+.+++++|++.|++++..+..|.|+++.|+..++.++++.+....
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999996543

>KOG0515|consensus

Probab=99.37  E-value=3.2e-12  Score=115.88  Aligned_cols=117  Identities=29%  Similarity=0.317  Sum_probs=94.8

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcc
Q psy2356           4 GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL   83 (529)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~   83 (529)
                      ....|..|+..|.+|+|+..+..--|+...+..|.|+||-|++.||.+||+||++.|+++|..|.+||||||||      
T Consensus       550 PLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCA------  623 (752)
T KOG0515|consen  550 PLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCA------  623 (752)
T ss_pred             hHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhh------
Confidence            45678999999999999999987678888899999999999999999999999999999999999999888866      


Q ss_pred             ccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC-----CCCCCcHHHHHH--HcCcHHHHHHHHh
Q psy2356          84 VPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR-----GKDGFTPLAVAM--QQGHDKVVAVLLE  146 (529)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~l~~A~--~~~~~~~v~~Ll~  146 (529)
                                          +.+++..+++.|++.|+-     -.++.|+..-+-  ..|...+.+||..
T Consensus       624 --------------------ASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  624 --------------------ASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             --------------------hhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence                                678889999999999764     334445554332  2345555555543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.36  E-value=8.4e-12  Score=111.07  Aligned_cols=120  Identities=31%  Similarity=0.442  Sum_probs=102.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC-----hhHHHHHHHCCC---CCCCCCCCCCchH
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGH-----LHVVTELLSRGA---NVDSATKKGNTAL   74 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~-----~~iv~~Ll~~ga---~~~~~~~~~~~~l   74 (529)
                      .+.++++.|+..++.+.++++++.|++++..+..|.||||+|+..|+     .+++++|++.|+   ..+.++..     
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~-----  146 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED-----  146 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC-----
Confidence            37899999999999999999999999999999999999999999999     999999999999   44443544     


Q ss_pred             HHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356          75 HIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLEND  148 (529)
Q Consensus        75 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~  148 (529)
                                           |.||||+|+..|+.++++.|++.++.    +..+.|+++.|+..++.++++.++...
T Consensus       147 ---------------------g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 ---------------------GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ---------------------CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence                                 45556667888899999999999766    577889999999999999998888754

>KOG1710|consensus

Probab=99.34  E-value=1e-11  Score=103.99  Aligned_cols=119  Identities=27%  Similarity=0.414  Sum_probs=105.5

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      +...+|..|+-+|+.+....|++.--.+|.+|..|.|+|..|+..|+.++|+.|++.|+|+|-                 
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~-----------------   73 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND-----------------   73 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc-----------------
Confidence            567899999999999999999987556899999999999999999999999999999999984                 


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHh
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLE  146 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~  146 (529)
                              .+...+.|||++|+-+|+.++-..|++.|++    +.-|+|+-.+|+.-|+.++|..+-+
T Consensus        74 --------~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   74 --------KQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             --------ccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence                    2344457888899999999999999999988    6778999999999999999876543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.32  E-value=7.2e-12  Score=126.55  Aligned_cols=99  Identities=31%  Similarity=0.436  Sum_probs=87.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcch
Q psy2356         387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA  466 (529)
Q Consensus       387 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  466 (529)
                      +.|+.|+..|+.+.+++|+++                   |+++|.+|..|+||||+|+..|+.++|++|+++|++++..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-------------------Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~  144 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-------------------GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL  144 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-------------------CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC
Confidence            458899999999999888876                   5567888899999999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHhCCchHHHHhhcc-------cchhhhccCCCC
Q psy2356         467 AKEGHTALSIAQKLGYISVEESLKGV-------TETLIIAKGDGE  504 (529)
Q Consensus       467 ~~~g~t~l~~A~~~~~~~~~~~L~~~-------~~~~~~~~~~~~  504 (529)
                      |..|.||||+|+..|+.+++++|+++       +++.......++
T Consensus       145 d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~  189 (664)
T PTZ00322        145 DKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGK  189 (664)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCC
Confidence            99999999999999999999999998       555555444444

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.32  E-value=1.1e-11  Score=125.24  Aligned_cols=105  Identities=30%  Similarity=0.408  Sum_probs=97.6

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy2356         215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI  294 (529)
Q Consensus       215 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  294 (529)
                      ..|+.|+..|+.+.++.|++.|++++..|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHC-------CCCcccccccCCcHHHHH
Q psy2356         295 IRILLRN-------GAQVDARAREGHTALSIA  319 (529)
Q Consensus       295 ~~~Ll~~-------g~~~~~~~~~g~t~l~~a  319 (529)
                      +++|+++       |++.+..+..|.+|+..+
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            9999999       888888887777666544

>KOG0515|consensus

Probab=99.29  E-value=1.6e-11  Score=111.41  Aligned_cols=123  Identities=25%  Similarity=0.344  Sum_probs=99.7

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHH
Q psy2356         250 LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE  329 (529)
Q Consensus       250 l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  329 (529)
                      |.-|+..|-+++|+..+..-.|+...+.+|.|+||.|+-.|+.+||++|++.|+++|..|.+||||||.|+..+++.+.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            44577788888888888887788888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhhhhcccccccCCCCCCcHHHHHH--HhCchhHHHHhhhhhhHH
Q psy2356         330 SLGAAERSQLKKRGREGHTALSIAQ--KLGYISVEESLKGVTETL  372 (529)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~l~~~~~~~  372 (529)
                      .|++...+.+..+-.++.|+...+-  +.|...+.+||....+.+
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vqesm  678 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQESM  678 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHHHhh
Confidence            8888888888888888888887765  357777888886555543

>PF13606 Ank_3: Ankyrin repeat

Probab=99.00  E-value=5.7e-10  Score=61.44  Aligned_cols=28  Identities=43%  Similarity=0.770  Sum_probs=17.9

Q ss_pred             CChHHHHHHHcCChhHHHHHHHCCCCCC
Q psy2356          37 GLNALHLASKDGHLHVVTELLSRGANVD   64 (529)
Q Consensus        37 g~t~L~~A~~~g~~~iv~~Ll~~ga~~~   64 (529)
                      |+||||+||..|+.|+|++|+++|+|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.96  E-value=9.4e-10  Score=60.57  Aligned_cols=30  Identities=57%  Similarity=0.881  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCCcc
Q psy2356         436 AGFTPLHLSASEGHADMSAMLLEHGADVSH  465 (529)
Q Consensus       436 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  465 (529)
                      +|+||||+|++.|+.++|++|+++|+|++.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999863

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.85  E-value=4.9e-09  Score=59.81  Aligned_cols=31  Identities=35%  Similarity=0.638  Sum_probs=18.6

Q ss_pred             CChHHHHHHHcCChhHHHHHHHCCCCCCCCC
Q psy2356          37 GLNALHLASKDGHLHVVTELLSRGANVDSAT   67 (529)
Q Consensus        37 g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~   67 (529)
                      |+||||+|+..|+.+++++|+++|++++.++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666665543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.81  E-value=7.8e-09  Score=58.98  Aligned_cols=33  Identities=36%  Similarity=0.505  Sum_probs=30.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANA   35 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~   35 (529)
                      +|+||||+||..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            699999999999999999999999999998763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506|consensus

Probab=98.80  E-value=5e-09  Score=94.36  Aligned_cols=98  Identities=18%  Similarity=0.251  Sum_probs=87.0

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhC-
Q psy2356         381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH-  459 (529)
Q Consensus       381 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-  459 (529)
                      .+..+...+++|++.|++..++-|.-.                   |.|++.+|-+.+|+||+|+-.|+++++++|++. 
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~-------------------g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~  562 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQ-------------------GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNAC  562 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHh-------------------cccccccccccchhheeecccCceeHHHHHHHHH
Confidence            445566789999999999988777654                   677888999999999999999999999999986 


Q ss_pred             CCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         460 GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       460 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      +.+++..|..|+|||+-|...+|.+++++|.++...+.
T Consensus       563 kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~~y~  600 (622)
T KOG0506|consen  563 KVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQYPYT  600 (622)
T ss_pred             cCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999877554

>KOG0818|consensus

Probab=98.77  E-value=3e-08  Score=89.90  Aligned_cols=87  Identities=28%  Similarity=0.327  Sum_probs=75.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcc-cCCCCHHHHHHHcCcHHHHHHHHhCCCCCcch
Q psy2356         388 PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES-VAGFTPLHLSASEGHADMSAMLLEHGADVSHA  466 (529)
Q Consensus       388 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  466 (529)
                      -||.+++.|+.+.---|+..                   |+++|+.+ ..|.||||+|++.|+.-=+++|+-+|||+...
T Consensus       136 QLhasvRt~nlet~LRll~l-------------------GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~  196 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSL-------------------GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQ  196 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHc-------------------ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCC
Confidence            48899999998866555554                   55667655 46899999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHhCCchHHHHhhccc
Q psy2356         467 AKEGHTALSIAQKLGYISVEESLKGVT  493 (529)
Q Consensus       467 ~~~g~t~l~~A~~~~~~~~~~~L~~~~  493 (529)
                      |..|+||+.||-..||-++.+.|.++.
T Consensus       197 d~~GmtP~~~AR~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  197 DSSGMTPVDYARQGGHHELAERLVEIQ  223 (669)
T ss_pred             CCCCCcHHHHHHhcCchHHHHHHHHHH
Confidence            999999999999999999999887654

>KOG0506|consensus

Probab=98.73  E-value=1.6e-08  Score=91.18  Aligned_cols=91  Identities=30%  Similarity=0.432  Sum_probs=79.4

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHC-CCCCCCCCCCCCchHHHHhhcC
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSR-GANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      ++.-.+.+|++.|++..++.+.-+|.|.+.+|.+.+|+||.||..|+.+++++|++. +.+++.+|..|+|         
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rt---------  575 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRT---------  575 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCC---------
Confidence            456788999999999999999999999999999999999999999999999999987 7777776666555         


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcC
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEND  119 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  119 (529)
                                       ||..|...+|.+++++|-+..
T Consensus       576 -----------------PlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  576 -----------------PLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             -----------------cchHhHhcCcHHHHHHHHHHh
Confidence                             555678889999999998753

>KOG0511|consensus

Probab=98.69  E-value=5.6e-08  Score=85.22  Aligned_cols=70  Identities=30%  Similarity=0.374  Sum_probs=63.0

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCch
Q psy2356           4 GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTA   73 (529)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~   73 (529)
                      .+.-|..||+.|+++.|++|++.|+++|..|....+||.+|+..||.++|++|+++||-...-...|...
T Consensus        36 ~f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   36 PFGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             chHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            4567899999999999999999999999999999999999999999999999999999876555555554

>KOG0818|consensus

Probab=98.64  E-value=1.3e-07  Score=85.83  Aligned_cols=73  Identities=23%  Similarity=0.335  Sum_probs=65.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHh
Q psy2356           6 TSFLRAARAGHLDKIIEHLKNNVDINTAN-ANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIAS   78 (529)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~   78 (529)
                      -.||.+++.|+++..-.|+..|+++|..+ ..|.||||.|++.|+.-=+++|+-.|||+...|..|.||+.+|-
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHH
Confidence            46999999999999999999999999765 46999999999999999999999999999998888777666553

>KOG2384|consensus

Probab=98.64  E-value=4.9e-08  Score=77.17  Aligned_cols=69  Identities=28%  Similarity=0.265  Sum_probs=65.0

Q ss_pred             CCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCC-CCCcchhhcCCCHHHHHHHhCCchHHHHhhcccch
Q psy2356         427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG-ADVSHAAKEGHTALSIAQKLGYISVEESLKGVTET  495 (529)
Q Consensus       427 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  495 (529)
                      +.++|.+|..|+||+|+|+..|+.+.+.||+.+| +++..+|..|.+++.+|.+.|..+.+..|.++..+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            5689999999999999999999999999999999 99999999999999999999999999999988443

>KOG0783|consensus

Probab=98.64  E-value=1.3e-08  Score=98.06  Aligned_cols=84  Identities=25%  Similarity=0.404  Sum_probs=74.2

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcc-cCCCCHHHHHHHcCcHHHHHHHH
Q psy2356         379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES-VAGFTPLHLSASEGHADMSAMLL  457 (529)
Q Consensus       379 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll  457 (529)
                      +..|..|+|+||+|+..+..++++||+++|+                   |++.+| ..|+||||-|+.+|+++++-+||
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGi-------------------dv~vqD~ESG~taLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGI-------------------DVFVQDEESGYTALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCc-------------------eeeeccccccchHhhHhhhhchHHHHHHHH
Confidence            6678889999999999999988888888754                   556665 36899999999999999999999


Q ss_pred             hCCCCCcchhhcCCCHHHHHHHhC
Q psy2356         458 EHGADVSHAAKEGHTALSIAQKLG  481 (529)
Q Consensus       458 ~~g~~~~~~~~~g~t~l~~A~~~~  481 (529)
                      .+|+.+.+.|+.|.+||++-++-.
T Consensus       107 ~~g~SL~i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  107 SKGRSLRIKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             hcCCceEEecccCCCHHHHHhhcc
Confidence            999999999999999999988743

>KOG0783|consensus

Probab=98.61  E-value=2.4e-08  Score=96.36  Aligned_cols=77  Identities=25%  Similarity=0.313  Sum_probs=73.5

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhh
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANA-NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASL   79 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~   79 (529)
                      -|.|+||.|+..|..++++||+++|++++..|. .|+||||-|+..|++|++-.||.+|+...+.|+.|.+||...+.
T Consensus        51 ~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   51 YGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            489999999999999999999999999998885 59999999999999999999999999999999999999999876

>KOG0782|consensus

Probab=98.56  E-value=2.7e-07  Score=85.30  Aligned_cols=116  Identities=22%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHH
Q psy2356         217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN--PDIPTVRGETPLHLAARANQTDI  294 (529)
Q Consensus       217 l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~l~~a~~~~~~~~  294 (529)
                      +..|+..+++--++-...+|.++-..+.+..+.||+|+..|+-++|+|++++|..  .+..+..|.|+||.|+-.++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            5667777777666777778888888888889999999999999999999999754  35667889999999999999999


Q ss_pred             HHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhh
Q psy2356         295 IRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG  332 (529)
Q Consensus       295 ~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~  332 (529)
                      .++|++.|+.+...|..|.||-..|.+.|..++..||-
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHh
Confidence            99999999999999999999999999999999999993

>KOG0782|consensus

Probab=98.55  E-value=2.5e-07  Score=85.57  Aligned_cols=117  Identities=26%  Similarity=0.290  Sum_probs=97.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcccccc
Q psy2356           8 FLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVW   87 (529)
Q Consensus         8 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~   87 (529)
                      +..|+..+++=-+......|-+.-..+.+-.|.||||+..|+-|||+|+|++|...-                       
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~el-----------------------  926 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSEL-----------------------  926 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHH-----------------------
Confidence            677888888877777777787888888999999999999999999999999976531                       


Q ss_pred             ccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356          88 LGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLEND  148 (529)
Q Consensus        88 ~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~  148 (529)
                       ++.-+..|.|+||.|+..++..+-.+|++.|+.    |..|.||-..|-+.|+.++..||-++.
T Consensus       927 -ld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  927 -LDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             -HHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence             123345567778888889999999999999877    788999999999999999999997653

>KOG0705|consensus

Probab=98.40  E-value=1.6e-06  Score=80.64  Aligned_cols=92  Identities=25%  Similarity=0.290  Sum_probs=78.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchh
Q psy2356         388 PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAA  467 (529)
Q Consensus       388 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  467 (529)
                      -|..|+...++..+-+||.||....               ++-...+.+|+|+||+|+..|++.+.++|+=+|+|+.++|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e---------------~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rd  691 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREE---------------VNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARD  691 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchh---------------hhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecc
Confidence            3566777888888888888876331               2223445678999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356         468 KEGHTALSIAQKLGYISVEESLKGVTE  494 (529)
Q Consensus       468 ~~g~t~l~~A~~~~~~~~~~~L~~~~~  494 (529)
                      ..|+|+|.||-+.|..++++.|+.++.
T Consensus       692 a~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  692 AHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             cCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            999999999999999999999999875

>KOG3609|consensus

Probab=98.36  E-value=2.2e-06  Score=84.06  Aligned_cols=115  Identities=25%  Similarity=0.317  Sum_probs=95.7

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHc--C--CCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHh
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKN--N--VDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIAS   78 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~--~--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~   78 (529)
                      .+.-.+..||..|+.-.|+..++.  .  .++|..|.-|+++|+.|..+.+.|++++|++++...               
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~---------------   88 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE---------------   88 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc---------------
Confidence            455567899999999999999974  2  567889999999999999999999999999986554               


Q ss_pred             hcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC--------------CCCCCcHHHHHHHcCcHHHHHHH
Q psy2356          79 LGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR--------------GKDGFTPLAVAMQQGHDKVVAVL  144 (529)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~--------------~~~~~~~l~~A~~~~~~~~v~~L  144 (529)
                                        ..+|..|+..|..++|+.++.+...              -..+.||+.+|+-.++.|+++.|
T Consensus        89 ------------------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~L  150 (822)
T KOG3609|consen   89 ------------------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCL  150 (822)
T ss_pred             ------------------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHH
Confidence                              2367788999999999999987332              23457899999999999999999


Q ss_pred             HhcCCC
Q psy2356         145 LENDTR  150 (529)
Q Consensus       145 l~~~~~  150 (529)
                      +.++..
T Consensus       151 l~kg~~  156 (822)
T KOG3609|consen  151 LTRGHC  156 (822)
T ss_pred             HHcCCC
Confidence            988654

>KOG0511|consensus

Probab=98.30  E-value=2.2e-06  Score=75.48  Aligned_cols=85  Identities=25%  Similarity=0.262  Sum_probs=66.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcc
Q psy2356         386 LTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH  465 (529)
Q Consensus       386 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  465 (529)
                      .--|..||+.|.++.|++|++.                   |+++|..|.....||.+|+.+|+...||+|+++||-.+.
T Consensus        37 f~elceacR~GD~d~v~~LVet-------------------gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r   97 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-------------------GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR   97 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-------------------CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            3457899999999998888875                   678899999999999999999999999999999997665


Q ss_pred             hhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356         466 AAKEGHTALSIAQKLGYISVEESLKGV  492 (529)
Q Consensus       466 ~~~~g~t~l~~A~~~~~~~~~~~L~~~  492 (529)
                      -...|..++.-|.   +..|-+.|+++
T Consensus        98 dtf~G~RC~YgaL---nd~IR~mllsy  121 (516)
T KOG0511|consen   98 DTFDGDRCHYGAL---NDRIRRMLLSY  121 (516)
T ss_pred             cccCcchhhhhhh---hHHHHHHHHHH
Confidence            5556666654443   33455455444

>KOG0705|consensus

Probab=98.29  E-value=2.7e-06  Score=79.20  Aligned_cols=91  Identities=23%  Similarity=0.247  Sum_probs=73.3

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCc----ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356         215 TPLHIASHYGNEGVANILLDKRADVN----FSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN  290 (529)
Q Consensus       215 t~l~~A~~~~~~~~v~~Ll~~g~~~~----~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  290 (529)
                      .-|..|+...++..+.+|+.+|....    ..+.+|.|+||.|+..|++.+.++|+-+|+|+..+|..|.|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            34566777788888888888875532    33456788999999999998888888888888888888899999998888


Q ss_pred             CHHHHHHHHHCCCCc
Q psy2356         291 QTDIIRILLRNGAQV  305 (529)
Q Consensus       291 ~~~~~~~Ll~~g~~~  305 (529)
                      ..++++.|+++|+..
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            889999998888753

>KOG0522|consensus

Probab=98.29  E-value=1.8e-06  Score=79.72  Aligned_cols=94  Identities=27%  Similarity=0.303  Sum_probs=75.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcch
Q psy2356         387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA  466 (529)
Q Consensus       387 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  466 (529)
                      -|+|+++.....+-+...+..                 +.+..++..|..|.||||+|+.-|+.+.++.|+.+|+++.+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~-----------------~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~k   84 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLA-----------------KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIK   84 (560)
T ss_pred             cccchhhhccchhhHHHHHhh-----------------hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccc
Confidence            347777776665544443332                 124567888999999999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         467 AKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       467 ~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      |..|+++||.|+..|+.+++..++.+.....
T Consensus        85 N~~gWs~L~EAv~~g~~q~i~~vlr~~~~q~  115 (560)
T KOG0522|consen   85 NNEGWSPLHEAVSTGNEQIITEVLRHLKYQA  115 (560)
T ss_pred             ccccccHHHHHHHcCCHHHHHHHHHHhHHHH
Confidence            9999999999999999998888777655433

>KOG0521|consensus

Probab=98.21  E-value=2.6e-06  Score=86.18  Aligned_cols=91  Identities=33%  Similarity=0.465  Sum_probs=81.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2356         383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGAD  462 (529)
Q Consensus       383 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  462 (529)
                      ..|.++||.|+..+..-++++|+++                   |+++|..+..|+||+|.+...|+..++..|+++|++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~-------------------ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~  714 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN-------------------GADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD  714 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc-------------------CCcchhhhccCCCcchhhhhhcccchhhhhcccccc
Confidence            4578999999999998888888876                   566789999999999999999999999999999999


Q ss_pred             CcchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356         463 VSHAAKEGHTALSIAQKLGYISVEESLKGV  492 (529)
Q Consensus       463 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  492 (529)
                      .++.+..|.+++++|.+..+.+++-++...
T Consensus       715 ~~a~~~~~~~~l~~a~~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  715 PNAFDPDGKLPLDIAMEAANADIVLLLRLA  744 (785)
T ss_pred             ccccCccCcchhhHHhhhccccHHHHHhhh
Confidence            999999999999999988888877777655

>KOG0522|consensus

Probab=98.21  E-value=3.7e-06  Score=77.76  Aligned_cols=87  Identities=26%  Similarity=0.402  Sum_probs=71.8

Q ss_pred             HHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccc
Q psy2356           7 SFLRAARAGHLDKIIEHLK--NNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLV   84 (529)
Q Consensus         7 ~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~   84 (529)
                      ++|.++-..+.+-+...+.  ....++..|..|+||||.|+..|+.+.++.|+..|+++..+|..|++|+|         
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~---------   93 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLH---------   93 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHH---------
Confidence            4888988888887777554  34567889999999999999999999999999999999988888777666         


Q ss_pred             cccccccccCCCCCHHHHHHHcCcHHHHHHHhhcC
Q psy2356          85 PVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEND  119 (529)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  119 (529)
                                       .|+..|+.+++..++.+.
T Consensus        94 -----------------EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   94 -----------------EAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             -----------------HHHHcCCHHHHHHHHHHh
Confidence                             557788888887777653

>KOG3609|consensus

Probab=98.20  E-value=6.7e-06  Score=80.82  Aligned_cols=130  Identities=22%  Similarity=0.218  Sum_probs=87.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC----CCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHH
Q psy2356         280 ETPLHLAARANQTDIIRILLRN----GAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK  355 (529)
Q Consensus       280 ~t~l~~a~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~  355 (529)
                      .--...|+.+|+.-.|+..++.    ..++|..|.-|+++++.|..+.+.+++++|+....                   
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~-------------------   86 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS-------------------   86 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcc-------------------
Confidence            3445677777777777777663    24566666677777777777777777777643220                   


Q ss_pred             hCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCccc
Q psy2356         356 LGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV  435 (529)
Q Consensus       356 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~  435 (529)
                                                  .-..+|-+|+..|.+++|+.++.+-.......         ..+......-.
T Consensus        87 ----------------------------~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~---------~~~d~~~~~ft  129 (822)
T KOG3609|consen   87 ----------------------------EEGDALLLAIAVGSVPLVELLLVHFVDAPYLE---------RSGDANSPHFT  129 (822)
T ss_pred             ----------------------------ccchHHHHHHHHHHHHHHHHHHhcccccchhc---------cccccCcccCC
Confidence                                        11366778888888888888888744332111         12222233445


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCCcc
Q psy2356         436 AGFTPLHLSASEGHADMSAMLLEHGADVSH  465 (529)
Q Consensus       436 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  465 (529)
                      -+.||++.||..+++||+++|+++|+++..
T Consensus       130 ~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  130 PDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             CCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            679999999999999999999999998754

>KOG2384|consensus

Probab=97.99  E-value=2.1e-05  Score=62.66  Aligned_cols=65  Identities=26%  Similarity=0.205  Sum_probs=40.7

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCcccccccCCcHHHHHHHcCChhHHHHhhhh
Q psy2356         270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNG-AQVDARAREGHTALSIAQKLGYISVEESLGAA  334 (529)
Q Consensus       270 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  334 (529)
                      .++|.+|..|+|+++.|+..|+.+.+.||+.+| +.+...+..+.+++.+|-+.|+.+++..|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            345566666666666666666666666666666 55666666666666666666666666666544

>KOG0521|consensus

Probab=97.84  E-value=1.3e-05  Score=81.19  Aligned_cols=76  Identities=29%  Similarity=0.416  Sum_probs=70.4

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHh
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIAS   78 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~   78 (529)
                      .|-|+||.|+..|..-.++.|+++|+++|..|..|++|+|.+...|+...+..|+++|++.+..+..+.+|+++|.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh
Confidence            4689999999999999999999999999999999999999999999999999999999999998888888877764

>KOG0520|consensus

Probab=97.46  E-value=0.00015  Score=73.28  Aligned_cols=118  Identities=22%  Similarity=0.306  Sum_probs=93.7

Q ss_pred             CCCCCCCCChHHHHHHHcCChhHHHHHHHC-CCCCCCCCCCCCchHHHHhhcCcccccc-------ccccccCCCCCHHH
Q psy2356          30 INTANANGLNALHLASKDGHLHVVTELLSR-GANVDSATKKGNTALHIASLGEFLVPVW-------LGDFKQGDGFTPLA  101 (529)
Q Consensus        30 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~l~~a~~~~~~~~~~-------~~~~~~~~~~~~l~  101 (529)
                      +......|.+.+|.|+..++..+++.+++- |......+..+.-.+|..+..+..-..+       -.++++..|.||||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            445566788999999999999999999986 7777888888888888866666552222       23788999999999


Q ss_pred             HHHHcCcHHHHHHHhhcCCC----------CCCCCcHHHHHHHcCcHHHHHHHHhc
Q psy2356         102 VAMQQGHDKVVAVLLENDTR----------GKDGFTPLAVAMQQGHDKVVAVLLEN  147 (529)
Q Consensus       102 ~A~~~~~~~~v~~Ll~~~~~----------~~~~~~~l~~A~~~~~~~~v~~Ll~~  147 (529)
                      ||+..|+..++..|...+++          ...|.|+-..|...|+..+.-+|-+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999977654          34577888888888888888877664

>KOG2505|consensus

Probab=97.41  E-value=0.00017  Score=66.50  Aligned_cols=69  Identities=25%  Similarity=0.231  Sum_probs=52.6

Q ss_pred             HHHHHHHcCCCCCCc------ccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhh
Q psy2356         419 IATTLLEYGAKPNAE------SVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK  490 (529)
Q Consensus       419 ~~~~L~~~g~~~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  490 (529)
                      .+.+|.+++++.|..      +...-|+||+|+.+|.-++|.+||+.|+|+.+.|..|.||..++.   +.++-..++
T Consensus       406 ~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  406 SIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             HHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            444555555544432      334678999999999999999999999999999999999999987   444444443

>KOG0520|consensus

Probab=97.32  E-value=0.00032  Score=71.09  Aligned_cols=125  Identities=18%  Similarity=0.172  Sum_probs=92.2

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHH
Q psy2356         208 VTSKSGFTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ-NDANPDIPTVRGETPLHL  285 (529)
Q Consensus       208 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~  285 (529)
                      .....+.+.+|.++..+..-+++.+++- |......+..+.-.+|+ |..++.+..-+++. .|..++++|..|+||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3445678889998888888888888875 65556666667777777 44555555544443 478888889999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCc------ccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356         286 AARANQTDIIRILLRNGAQV------DARAREGHTALSIAQKLGYISVEESLGA  333 (529)
Q Consensus       286 a~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~l~~a~~~~~~~~~~~l~~  333 (529)
                      |+.+|+..++.-|++.|++.      +.....|.|+...|..+|+..+.-+|-+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            99999988888888766543      3334468888888888888888877744

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.29  E-value=0.0028  Score=50.93  Aligned_cols=136  Identities=15%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCC-CCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCC
Q psy2356         127 TPLAVAMQQGHDKVVAVLLENDTRG-KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHN  205 (529)
Q Consensus       127 ~~l~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  205 (529)
                      -.+..|++.+...++++.-+.-... ....+.+..||+..+.++|+|+-+.-                            
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~~~~~q~LFElAC~~qkydiV~WI~qnL----------------------------   99 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENERYLNQELFELACEEQKYDIVKWIGQNL----------------------------   99 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcchhHHHHHHHHHHHHccccHHHHHhhcc----------------------------
Confidence            3455566666666666554433222 23334556666666666666664311                            


Q ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCcccCCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy2356         206 PDVTSKSGFTPLHIASHYGNEGVAN----ILLDKRADVNFSAKS--GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG  279 (529)
Q Consensus       206 ~~~~~~~~~t~l~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~  279 (529)
                         .-.+-.+.+..|...+++++..    +++++...-.-.|..  -..-|..|+..|....+...+++|.+++.     
T Consensus       100 ---~i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-----  171 (192)
T PF03158_consen  100 ---HIYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-----  171 (192)
T ss_pred             ---CCCCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-----
Confidence               1112245566666666666532    122221110000000  00124456666666666666666654442     


Q ss_pred             CcHHHHHHHcCCHHHHHHHH
Q psy2356         280 ETPLHLAARANQTDIIRILL  299 (529)
Q Consensus       280 ~t~l~~a~~~~~~~~~~~Ll  299 (529)
                       ++|..|+++++..++.+++
T Consensus       172 -~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  172 -IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             -HHHHHHHHhhHHHHHHHhh
Confidence             5666666666666666665

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.20  E-value=0.0068  Score=48.76  Aligned_cols=45  Identities=22%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhc
Q psy2356         441 LHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG  491 (529)
Q Consensus       441 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  491 (529)
                      |..|+..|-+..|.-.+++|-+++.      ++|..|+++++..|+.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            6677777777777777777765532      57777777777777777653

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=97.10  E-value=0.00099  Score=36.13  Aligned_cols=26  Identities=50%  Similarity=0.830  Sum_probs=14.2

Q ss_pred             CChHHHHHHHcCChhHHHHHHHCCCC
Q psy2356          37 GLNALHLASKDGHLHVVTELLSRGAN   62 (529)
Q Consensus        37 g~t~L~~A~~~g~~~iv~~Ll~~ga~   62 (529)
                      |.||+|+|+..|+.+++++|++.|.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.04  E-value=0.0012  Score=35.80  Aligned_cols=29  Identities=34%  Similarity=0.495  Sum_probs=26.1

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDIN   31 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~   31 (529)
                      +|.|+||.|+..|+.++++.|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999887654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.98  E-value=0.00092  Score=61.86  Aligned_cols=62  Identities=21%  Similarity=0.220  Sum_probs=51.5

Q ss_pred             HHHHHHHHHcCCCCCC------CCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHh
Q psy2356          17 LDKIIEHLKNNVDINT------ANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIAS   78 (529)
Q Consensus        17 ~~~v~~ll~~~~~~~~------~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~   78 (529)
                      .+.+++|.+++.+.|.      .+.--.|+||||+.+|.-++|.+||+.|+|+...|..|.||...+.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4667788887766542      3444678999999999999999999999999999999999988765

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.80  E-value=0.04  Score=45.91  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             hHHHHHHHHcC-CCCCCc---ccCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2356         417 MDIATTLLEYG-AKPNAE---SVAGFTPLHLSASEGHADMSAMLLEHGAD  462 (529)
Q Consensus       417 ~~~~~~L~~~g-~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  462 (529)
                      ..++++++.+| +++|..   -..|.|-|.-|+++++.+++.+||++||-
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            35666666665 566643   34678888888888888888888888874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.47  E-value=0.28  Score=41.12  Aligned_cols=48  Identities=17%  Similarity=0.263  Sum_probs=36.6

Q ss_pred             CHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356          98 TPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEND  148 (529)
Q Consensus        98 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  148 (529)
                      -.|..|+...+.+-+.-++..-   ....+++-+++..+..+++-+|+++.
T Consensus       155 isledAV~AsN~~~i~~~VtdK---kdA~~Am~~si~~~K~dva~~lls~f  202 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDK---KDAHQAMWLSIGNAKEDVALYLLSKF  202 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcch---HHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            3577888888888777776532   33457888899999999999999864

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.24  E-value=0.094  Score=36.48  Aligned_cols=48  Identities=21%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHC
Q psy2356           5 HTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSR   59 (529)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~   59 (529)
                      ...+..|+..|+.|+++..++.+ .++      ...+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            45689999999999999999755 222      3589999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.42  E-value=0.13  Score=35.82  Aligned_cols=48  Identities=19%  Similarity=0.299  Sum_probs=34.0

Q ss_pred             CHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356          98 TPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEND  148 (529)
Q Consensus        98 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  148 (529)
                      ..+..|+.+|+.|+++.+++.+..+   ...+..|+..-+.++++||+++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            4567778888888888877655222   35677788888888888877763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03218 maturation of RBCL 1; Provisional

Probab=88.95  E-value=35  Score=37.69  Aligned_cols=79  Identities=9%  Similarity=0.064  Sum_probs=35.4

Q ss_pred             HHHHHHHcCCHHH----HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH----HHHHHHHCCCCcccccccCCcHHHHHH
Q psy2356         249 PLHVASFMGCMNI----VIYLLQNDANPDIPTVRGETPLHLAARANQTD----IIRILLRNGAQVDARAREGHTALSIAQ  320 (529)
Q Consensus       249 ~l~~a~~~~~~~~----v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~l~~a~  320 (529)
                      .+...+..|.++-    ++.+.+.|..++..  ...+.+...++.|+.+    +++.+.+.|..++...  ..+.+...+
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~--tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T--ynsLI~a~~  660 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF--FSALVDVAG  660 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHH
Confidence            3444556666553    33344444433321  1234455555666654    3444444555543221  122334445


Q ss_pred             HcCChhHHHHh
Q psy2356         321 KLGYISVEESL  331 (529)
Q Consensus       321 ~~~~~~~~~~l  331 (529)
                      ..|..+-+..+
T Consensus       661 k~G~~eeA~~l  671 (1060)
T PLN03218        661 HAGDLDKAFEI  671 (1060)
T ss_pred             hCCCHHHHHHH
Confidence            56665544444

>PLN03218 maturation of RBCL 1; Provisional

Probab=87.89  E-value=48  Score=36.65  Aligned_cols=57  Identities=12%  Similarity=0.227  Sum_probs=33.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCChhHHHHHH----HCCCCCC
Q psy2356           6 TSFLRAARAGHLDKIIEHLK----NNVDINTANANGLNALHLASKDGHLHVVTELL----SRGANVD   64 (529)
Q Consensus         6 t~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll----~~ga~~~   64 (529)
                      +.|..+|+.|+++.+..+++    .|..++..  ...+.+...++.|..+-+..++    +.|..++
T Consensus       442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~--tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd  506 (1060)
T PLN03218        442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCK--LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN  506 (1060)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence            45667788888877666663    45554432  1234555567778776544444    4455554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	529
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-52
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-37
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-19
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-19
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-15
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-18
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-12
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-18
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-18
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-18
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-18
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-15
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-15
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-18
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-16
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-18
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-14
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-13
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-17
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-13
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-17
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-12
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-12
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-17
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-08
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-16
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-16
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-16
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-15
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-13
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-15
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-13
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-15
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-13
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-13
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-14
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-14
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		5e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		7e-13
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-12
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-10
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-11
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		7e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-11
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-11
1uoh_A	226	Human Gankyrin Length = 226		2e-11
1uoh_A	226	Human Gankyrin Length = 226		3e-08
1uoh_A	226	Human Gankyrin Length = 226		2e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-11
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		7e-11
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-10
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		7e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-10
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-10
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-10
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-10
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-10
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-10
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-10
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-07
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		6e-10
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		7e-10
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		7e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		7e-10
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-09
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		9e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-09
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		7e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		6e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		5e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		7e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-08
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-08
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-06
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-08
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		2e-08
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		2e-04
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		6e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		7e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-07
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		4e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-07
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-07
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		4e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-07
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		5e-07
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		9e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		6e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		5e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		6e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		6e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		8e-07
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		8e-07
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		5e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		9e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		9e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-06
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-06
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		9e-06
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-06
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		4e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-06
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		3e-06
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		6e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		6e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		6e-05
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		4e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-05
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		6e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		6e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		1e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		5e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		3e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		5e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		3e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		3e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		4e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		4e-04
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		5e-04
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		5e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		5e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		7e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  202 bits (513), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 158/501 (31%), Positives = 238/501 (47%), Gaps = 112/501 (22%)
Query: 48  GHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQG 107
           GHL +V  LL RGA+ + +  K  T LH+A+                          + G
Sbjct: 25  GHLPIVKNLLQRGASPNVSNVKVETPLHMAA--------------------------RAG 58
Query: 108 HDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIXXX 163
           H +V   LL+N    + + KD  TPL  A + GH  +V +LLEN+    +   A H    
Sbjct: 59  HTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 118
Query: 164 XXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHY 223
                                 +++  G+  T   L++ E +    +K GFTPLH+A+ Y
Sbjct: 119 ----------------------IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 156
Query: 224 GNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL 283
           G   VA +LL++ A  N + K+GLTPLHVA     ++IV  LL    +P  P   G TPL
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL 216
Query: 284 HLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRG 343
           H+AA+ NQ ++ R LL+ G   +A + +G T L +A                        
Sbjct: 217 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA-----------------------A 253
Query: 344 REGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE-KHKNGLTPLHLCAQEDRVGVAE 402
           +EGH  +                     L+  + +G   +K+GLTPLHL AQE  V VA+
Sbjct: 254 QEGHAEM------------------VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295
Query: 403 LLLKNNAQVDTPTKM--------------DIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
           +L+K+   VD  T+M               +   LL++ A  NA++  G++PLH +A +G
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 355
Query: 449 HADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVT-ETLIIAKGDGEKHK 507
           H D+  +LL++GA  +  + +G T L+IA++LGYISV + LK VT ET  +   D  KH+
Sbjct: 356 HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD--KHR 413
Query: 508 VVAPEIMQETFMSDSEDENGE 528
           +  PE + E  +  SEDE  E
Sbjct: 414 MSFPETVDE-ILDVSEDEGEE 433

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 150/293 (51%), Gaps = 27/293 (9%)
Query: 214 FTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
            TPLH+AS  G+  +   LL + A  N S     TPLH+A+  G   +  YLLQN A  +
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA 333
                 +TPLH AAR   T+++++LL N A  +     GHT L IA + G++    +L  
Sbjct: 75  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 334 AERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKH---KNGLTPLH 390
            E SQ     ++G T L +A K G + V E         ++ + D   +   KNGLTPLH
Sbjct: 135 KEASQ-ACMTKKGFTPLHVAAKYGKVRVAE---------LLLERDAHPNAAGKNGLTPLH 184
Query: 391 LCAQEDRVGVAELLLKNNAQVDTP--------------TKMDIATTLLEYGAKPNAESVA 436
           +    + + + +LLL       +P               ++++A +LL+YG   NAESV 
Sbjct: 185 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244
Query: 437 GFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           G TPLHL+A EGHA+M A+LL   A+ +   K G T L +  + G++ V + L
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 80/133 (60%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +    +G+TPLH+A+H+G+  +  +LL   ADVN     G+TPLH+A+  G 
Sbjct: 33  LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+N A+ +     G TPLHLAA+    +I+ +LL+NGA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
           +   G   + E L
Sbjct: 153 SIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 87/206 (42%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
           AARA Q D +RIL+ NGA V+A                                  R   
Sbjct: 21  AARAGQDDEVRILMANGADVNA----------------------------------RDFT 46
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
           G T L +A   G++ +        E L+    D   K   G+TPLHL A+   + + E+L
Sbjct: 47  GWTPLHLAAHFGHLEI-------VEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
           LKN                   GA  NA    GFTPLHL+A  GH ++  +LL++GADV+
Sbjct: 100 LKN-------------------GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
              K G TA  I+   G   + E L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 78/136 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +   K G+TPLH+A+  G+  +  +LL   ADVN   K G TPLH+A+  G 
Sbjct: 21  LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+  A+ +     G TPLHLAAR    +I+ +LL+ GA V+A+ + G T   +
Sbjct: 81  LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL 140
Query: 319 AQKLGYISVEESLGAA 334
           A + G+  + E L  A
Sbjct: 141 AIREGHEDIAEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
           AARA Q D +RIL+ NGA V+A+                                   ++
Sbjct: 9   AARAGQDDEVRILMANGADVNAK----------------------------------DKD 34
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
           G+T L +A + G++ +        E L+ A  D   K K+G TPLHL A+E  + + E+L
Sbjct: 35  GYTPLHLAAREGHLEI-------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
           LK  A V                   NA+   G+TPLHL+A EGH ++  +LL+ GADV+
Sbjct: 88  LKAGADV-------------------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
              K G T   +A + G+  + E L+
Sbjct: 129 AQDKFGKTPFDLAIREGHEDIAEVLQ 154

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 75/121 (61%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + + T  SG TPLH+A+ YG+  +  +LL   ADVN     G TPLH+A+ +G 
Sbjct: 33  LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL++ A+ +     G+TPLHLAA     +I+ +LL++GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN +  SGLTPLH+A+  G + IV  LL++ A+ +   + G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
            TPLHLAA     +I+ +LL++GA V+A    G T L +A  +G++ + E L     + +
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
             + + G TA  I+   G   + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAK 429
           +GLTPLHL A    + + E+LLK+ A V+       TP  +       +I   LL++GA 
Sbjct: 46  SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
            NA    G TPLHL+A  GH ++  +LL+HGADV+   K G TA  I+   G   + E L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 490 K 490
           +
Sbjct: 166 Q 166

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 78/133 (58%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +    SG+TPLH+A+  G+  +  +LL   ADVN    +G+TPL +A+  G 
Sbjct: 33  LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+N A+ +   + G TPLHLAA     +I+ +LL+NGA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
           +   G   + E L
Sbjct: 153 SIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
           G TPLHL A    + + E+LLKN A V+       TP ++       +I   LL+ GA  
Sbjct: 47  GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           NA  + G TPLHL+A  GH ++  +LL++GADV+   K G TA  I+   G   + E L+
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 75/121 (61%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + + T  SG TPLH+A+ YG+  +  +LL   ADVN     G TPLH+A+ +G 
Sbjct: 33  LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL++ A+ +     G+TPLHLAA     +I+ +LL++GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN +  SGLTPLH+A+  G + IV  LL++ A+ +   + G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
            TPLHLAA     +I+ +LL++GA V+A    G T L +A  +G++ + E L     + +
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
             + + G TA  I+   G   + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAK 429
           +GLTPLHL A    + + E+LLK+ A V+       TP  +       +I   LL++GA 
Sbjct: 46  SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
            NA    G TPLHL+A  GH ++  +LL+HGADV+   K G TA  I+   G   + E L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 490 K 490
           +
Sbjct: 166 Q 166

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 80/133 (60%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + + T  +G TPLH+A+  G   +  +LL   ADVN S  +G+TPLH+A++ G 
Sbjct: 25  LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGH 84
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL++ A+ +     G TPLHLAA + Q +I+ +LL++GA V+A+   G TA  I
Sbjct: 85  LEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDI 144
Query: 319 AQKLGYISVEESL 331
           +   G   + E L
Sbjct: 145 SINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 80/158 (50%), Gaps = 18/158 (11%)
Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEK----HKNGLTPLHLCAQEDRVGVAELLLK 406
           +  Q LG   +E +  G  + + I   +G        NGLTPLHL A   ++ + E+LLK
Sbjct: 1   AFGQDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK 60
Query: 407 NNAQVD-------TPTKM-------DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM 452
           N A V+       TP  +       +I   LL++GA  NA   AG+TPLHL+A  G  ++
Sbjct: 61  NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEI 120
Query: 453 SAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
             +LL+HGADV+     G TA  I+   G   + E L+
Sbjct: 121 VEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 72/121 (59%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +   K G+TPLH+A+  G+  +  +LL   ADVN   K G TPLH+A+  G 
Sbjct: 33  LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+  A+ +     G TPLHLAAR    +I+ +LL+ GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN   K G TPLH+A+  G + IV  LL+  A+ +     G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
            TPLHLAAR    +I+ +LL+ GA V+A+ ++G+T L +A + G++ + E L  A  + +
Sbjct: 81  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
             + + G TA  I+   G   + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 94/206 (45%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
           AARA Q D +RIL+ NGA V+A+                                   ++
Sbjct: 21  AARAGQDDEVRILMANGADVNAK----------------------------------DKD 46
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
           G+T L +A + G++ +        E L+ A  D   K K+G TPLHL A+E  + + E+L
Sbjct: 47  GYTPLHLAAREGHLEI-------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
           LK  A V                   NA+   G+TPLHL+A EGH ++  +LL+ GADV+
Sbjct: 100 LKAGADV-------------------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
              K G TA  I+   G   + E L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 76/121 (62%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + + T   G+TPLH+A+  G+  +  +LL   ADVN S  +G+TPLH+A+  G 
Sbjct: 33  LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL++ A+ +     G TPLHLAA+    +I+ +LL++GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN +   G TPLH+A+  G + IV  LL+N A+ +   + G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
            TPLHLAA     +I+ +LL++GA V+A   +GHT L +A K G++ + E L     + +
Sbjct: 81  ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
             + + G TA  I+   G   + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKMDIAT-------TLLEYGA 428
            +G TPLHL A    + + E+LLKN A V+       TP  +  AT        LL++GA
Sbjct: 45  NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488
             NA    G TPLHL+A  GH ++  +LL+HGADV+   K G TA  I+   G   + E 
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 489 LK 490
           L+
Sbjct: 165 LQ 166

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +   K G+TPLH+A+  G+  +  +LL   ADVN   K G TPLH+A+  G 
Sbjct: 21  LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+  A+ +     G TPLHLAAR    +I+ +LL+ GA V+A+ + G T   +
Sbjct: 81  LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL 140
Query: 319 AQKLGYISVEESLGAA 334
           A   G   + E L  A
Sbjct: 141 AIDNGNEDIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
           AARA Q D +RIL+ NGA V+A+                                   ++
Sbjct: 9   AARAGQDDEVRILMANGADVNAK----------------------------------DKD 34
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
           G+T L +A + G++ +        E L+ A  D   K K+G TPLHL A+E  + + E+L
Sbjct: 35  GYTPLHLAAREGHLEI-------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
           LK  A V                   NA+   G+TPLHL+A EGH ++  +LL+ GADV+
Sbjct: 88  LKAGADV-------------------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
              K G T   +A   G   + E L+
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDIAEVLQ 154

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 73/116 (62%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +G TPLH+A+  G+  V  +LL+  ADVN   K+G TPLH+A+  G + +V  LL+  A+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISV 327
            +     G TPLHLAAR    +++++LL  GA V+A+ + G T L +A + G++ V
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 14/116 (12%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAK 429
           NG TPLHL A+   + V +LLL+  A V+   K              +++   LLE GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
            NA+   G TPLHL+A  GH ++  +LLE GADV+   K G T L +A + G++ V
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 73/121 (60%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +    SG TPLH+A+  G+  +  +LL   ADVN + K G TPLH+A+  G 
Sbjct: 33  LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+N A+ +     G TPLHLAA A   +I+ +LL+ GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN    SG TPLH+A+  G + IV  LL++ A+ +     G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
           +TPLHLAA     +I+ +LL+NGA V+A    G T L +A   G++ + E L     + +
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL-LKYGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
             + + G TA  I+   G   + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 87/205 (42%), Gaps = 59/205 (28%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
           AARA Q D +RIL+ NGA V+A    G T L +A   G++ + E L         K G +
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVL--------LKHGAD 72
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
            + A                                 K G TPLHL A    + + E+LL
Sbjct: 73  VNAA--------------------------------DKMGDTPLHLAALYGHLEIVEVLL 100
Query: 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
           KN A V                   NA    GFTPLHL+A  GH ++  +LL++GADV+ 
Sbjct: 101 KNGADV-------------------NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 466 AAKEGHTALSIAQKLGYISVEESLK 490
             K G TA  I+   G   + E L+
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 75/121 (61%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +    +G TPLH+A++ G+  +  +LL   ADV+ S   G TPLH+A++ G 
Sbjct: 33  LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+N A+ +     G TPLHLAA+    +I+ +LL++GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN +  +G TPLH+A++ G + IV  LL++ A+ D   V G
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
            TPLHLAA     +I+ +LL+NGA V+A   +G T L +A K GY+ + E L     + +
Sbjct: 81  YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
             + + G TA  I+   G   + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
           G TPLHL A    + + E+LLK+ A VD       TP  +       +I   LL+ GA  
Sbjct: 47  GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           NA    G TPLHL+A  G+ ++  +LL+HGADV+   K G TA  I+   G   + E L+
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 72/121 (59%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +     G TPLH+  + G+  +  +LL   ADVN S KSG TPLH+A++ G 
Sbjct: 33  LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+  A+ +    +G TPLHLAA     +I+ +LL+ GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAKP 430
           G+TPLHL      + + E+LLK  A V+   K              ++I   LL+YGA  
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           NA    G+TPLHL+A +GH ++  +LL++GADV+   K G TA  I+   G   + E L+
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 79/133 (59%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + + +   G+TPLH+A+++G+  +  +LL   ADVN     G+TPLH+A+  G 
Sbjct: 33  LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + +V  LL+N A+ +     G TPLHLAA     +I+ +LL++GA V+A+ + G TA  I
Sbjct: 93  LEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
           +   G   + E L
Sbjct: 153 SIDNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
           G TPLHL A    + + E+LLKN A V+       TP  +       ++   LL+ GA  
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           NA    GFTPLHL+A+ GH ++  +LL+HGADV+   K G TA  I+   G   + E L+
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 76/133 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +     G+TPLH+A+++G+  +  +LL   ADVN     G TPLH+A+  G 
Sbjct: 33  LMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+N A+ +     G TPLHLAA     +I+ +LL+ GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
           +   G   + E L
Sbjct: 153 SINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
           G TPLHL A    + + E+LLKN A V+       TP  +       +I   LL+ GA  
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           NA+   G TPLHL+A+ GH ++  +LL++GADV+   K G TA  I+   G   + E L+
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQ 166

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 73/139 (52%)
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
           + ++  GN      L++N  +P+ +   G TPLH A+  G++ +  +LL K AD N    
Sbjct: 9   IEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
            G TPLH A+  G   IV  LL   A+P+     G TPLH AA     +I+++LL  GA 
Sbjct: 69  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 305 VDARAREGHTALSIAQKLG 323
            +    +G T L +A++ G
Sbjct: 129 PNTSDSDGRTPLDLAREHG 147

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAK 429
           +G TPLH  A+     + +LLL   A  +       TP          +I   LL  GA 
Sbjct: 36  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLG 481
           PNA+   G TPLH +A  GH ++  +LL  GAD + +  +G T L +A++ G
Sbjct: 96  PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHG 147

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 44/280 (15%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           TPLH+A+ Y    +  +LL   ADV+   K GL PLH A   G   +   LL++ A  + 
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
             +   TPLH AA  N+ ++  +LL +GA        G +A+ +A               
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT------------- 166
Query: 335 ERSQLKKR---GREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL 391
              +L++R     +GH+ L  A+       E  L  V +TL +   + ++ ++  T LH 
Sbjct: 167 --PELRERLTYEFKGHSLLQAAR-------EADLAKVKKTLALEIINFKQPQSHETALH- 216
Query: 392 CA----QEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKPNAE 433
           CA       R  VAELLL+  A V+       TP  +       D+   L ++GAK NA 
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL 276
Query: 434 SVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTA 473
              G T LH +A  GH     +LL +G+D S  + +G TA
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 77/143 (53%)
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
           + ++  GN      L++N  + + +   G TPLH+A+  G++ V  +LL + AD N    
Sbjct: 9   IEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
            G TPLH+A+  G   +V  LL   A+P+     G+TPLHLAA     +++++LL  GA 
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 305 VDARAREGHTALSIAQKLGYISV 327
            +    +G T L +A++ G   V
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEV 151

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  GN+     LL+  ADVN S   G TPLH+A+  G   +V  LL   A+P+     G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
           +TPLHLAA     +++++LL  GA  +A+  +G T L +A + G+  V + L  ++ +  
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL-LSQGADP 129
Query: 340 KKRGREGHTALSIAQKLGYISV 361
                +G T L +A++ G   V
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEV 151

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAK 429
           +G TPLHL A+     V +LLL   A  +       TP  +       ++   LL  GA 
Sbjct: 36  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           PNA+   G TPLHL+A  GH ++  +LL  GAD + +  +G T L +A++ G   V
Sbjct: 96  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEV 151

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 71/121 (58%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           LI N  + +    +G TPLH+A+  G+  +  +LL   ADV+ +   G TPLH+A+  G 
Sbjct: 33  LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+  A+ +   + G TPLHLAA     +I+ +LL+ GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 14/107 (13%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
           GLTPLHL A    + + E+LLK+ A VD       TP  +       +I   LL+YGA  
Sbjct: 47  GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
           NA  + G TPLHL+A EGH ++  +LL++GADV+   K G TA  I+
Sbjct: 107 NAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 74/139 (53%)
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
           + ++  GN      LI+N  + + +   G TPLH A+  G++ +  +L+ K ADVN    
Sbjct: 9   IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 68
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
            G TPLH A+  G   IV  L+   A+ +     G TPLH AA+    +I+++L+  GA 
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 305 VDARAREGHTALSIAQKLG 323
           V+    +G T L +A++ G
Sbjct: 129 VNTSDSDGRTPLDLAREHG 147

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  GN+     L++  ADVN S   G TPLH A+  G   IV  L+   A+ +     G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
            TPLH AA+    +I+++L+  GA V+A+  +G T L  A K G+  + + L  ++ + +
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL-ISKGADV 129
Query: 340 KKRGREGHTALSIAQKLG 357
                +G T L +A++ G
Sbjct: 130 NTSDSDGRTPLDLAREHG 147

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
           +G TPLH  A+E    + +LL+   A V                   NA+   G TPLH 
Sbjct: 36  DGRTPLHYAAKEGHKEIVKLLISKGADV-------------------NAKDSDGRTPLHY 76
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           +A EGH ++  +L+  GADV+    +G T L  A K G+  +
Sbjct: 77  AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI 118

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + + T   G TPLH+A+  G+  +  +LL   ADVN     G TPLH+A+  G 
Sbjct: 33  LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL++ A+ +     G TPLHLAA     +I+ +LL+ GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 88/206 (42%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
           AARA Q D +RIL+ NGA V+A                                      
Sbjct: 21  AARAGQDDEVRILMANGADVNAT----------------------------------DWL 46
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVGVAELL 404
           GHT L +A K G++ +        E L+    D     N G TPLHL A    + + E+L
Sbjct: 47  GHTPLHLAAKTGHLEI-------VEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
           LK                   +GA  NA+   GFTPLHL+A +GH ++  +LL++GADV+
Sbjct: 100 LK-------------------HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
              K G TA  I+   G   + E L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 76/133 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +     G TPLH+A+  G+  +  +LL   ADVN    +G TPLH+A+ +G 
Sbjct: 21  LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH 80
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+  A+ +     G TPL+LAA     +I+ +LL++GA V+A+ + G TA  I
Sbjct: 81  LEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140
Query: 319 AQKLGYISVEESL 331
           +  +G   + E L
Sbjct: 141 SIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
           G TPLH+ A    + + E+LL+N A V+       TP  +       +I   LL+YGA  
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           NA+   G TPL+L+A  GH ++  +LL+HGADV+   K G TA  I+  +G   + E L+
Sbjct: 95  NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 73/133 (54%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +     G TPLH+A+  G+  +  +LL   ADVN     G TPLH+A+  G 
Sbjct: 33  LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+  A+ +     G TPLHLAA     +I+ +LL++GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
           +   G   + E L
Sbjct: 153 SIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 86/206 (41%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
           AARA Q D +RIL+ NGA V+A                                     +
Sbjct: 21  AARAGQDDEVRILMANGADVNAH----------------------------------DDQ 46
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
           G T L +A  +G+  +        E L+    D   +  +G TPLHL A    + + E+L
Sbjct: 47  GSTPLHLAAWIGHPEI-------VEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
           LK                   YGA  NA+   G TPLHL+A  GH ++  +LL+HGADV+
Sbjct: 100 LK-------------------YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
              K G TA  I+   G   + E L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 69/121 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
           L+ N  + +     G TPLH+A+  G+  +  +LL   ADVN    SG TPLH+A+  G 
Sbjct: 33  LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + IV  LL+  A+ +     G TPLHLAA     +I+ +LL+ GA V+A+ + G TA  I
Sbjct: 93  LEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
           +
Sbjct: 153 S 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN     G TPLH+A+ +G + IV  LL+N A+ +     G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
            TPLHLAA+    +I+ +LL+ GA V+A    G T L +A   G++ + E L     + +
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL-LKYGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
             + + G TA  I+   G   + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
           G TPLHL A+   + + E+LLKN A V+       TP  +       +I   LL+YGA  
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           NA+   G TPLHL+A  GH ++  +LL++GADV+   K G TA  I+   G   + E L+
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 121/255 (47%), Gaps = 36/255 (14%)
Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ 291
           LL++ AD+N++   GLT LH A     +++V +L++N AN + P   G  PLH AA    
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALS 351
            DI   L+  GA V A   EG T L IA++       E++    ++++ ++G +   A  
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEE-------EAMEELLQNEVNRQGVDIEAARK 171
Query: 352 IAQKLGYISVEESLKGVTETLIIAKGDGEKH-KNGLTPLHLCAQEDRVGVAELLLKNNAQ 410
             +++        L+   + L     +  +H K+G T LH+ A +    V +LL++    
Sbjct: 172 EEERI-------MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ---- 220
Query: 411 VDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEG 470
                + D+           N +   G+TPLH +A  G  +   +L+E+  D+    K G
Sbjct: 221 ----ARYDV-----------NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265
Query: 471 HTALSIAQK--LGYI 483
            TA  +A +  LGY+
Sbjct: 266 QTAFDVADEDILGYL 280

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
           LLE GA  N  +V G T LH +  + + DM   L+E+GA+++    EG   L  A   GY
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 483 ISVEESL 489
           + + E L
Sbjct: 119 LDIAEYL 125

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 41/234 (17%)
Query: 98  TPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKV 153
           +PL  A + GH  +  +L++     DT  +D  TPL  A +  H + V  L        +
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL--------I 64
Query: 154 RLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTT-------GNAATGGYLIKN-EHN 205
           +  AL                     VDP     ST        G+     YL+ N + +
Sbjct: 65  KAGAL---------------------VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103
Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
            +     G+TP+  A+ Y +  +  +LL K +D+N         LH A+F GC++I   L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           L    +     + G++PLH+AAR N+ D + + L   + V  + +EG T L  A
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 37/236 (15%)
Query: 248 TPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
           +PLH A+  G ++I   L+Q  AN D  +    TPL  AA  N  + ++ L++ GA VD 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 308 RAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKG 367
           +  EG T L +A K G+  V + L +  +  +  +   G T +  A +  ++ + +    
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK---- 128
Query: 368 VTETLIIAKG------DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIAT 421
               L+++KG      D E++      LH  A    V +AE+LL          K D+  
Sbjct: 129 ----LLLSKGSDINIRDNEEN----ICLHWAAFSGCVDIAEILL--------AAKCDL-- 170
Query: 422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
                    +A ++ G +PLH++A E   D   + L   +DV+   KEG T L  A
Sbjct: 171 ---------HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 74/143 (51%)
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
           + ++  GN      LI+N  + + +   G TPLH A+  G++ V  +L+ K ADVN    
Sbjct: 9   IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
            G TPLH A+  G   +V  L+   A+ +     G TPLH AA     +++++L+  GA 
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 305 VDARAREGHTALSIAQKLGYISV 327
           V+    +G T L +A++ G   V
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEV 151

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  GN+     L++  ADVN S   G TPLH A+  G   +V  L+   A+ +     G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
            TPLH AA     +++++L+  GA V+A+  +G T L  A + G+  V + L  ++ + +
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL-ISKGADV 129
Query: 340 KKRGREGHTALSIAQKLGYISV 361
                +G T L +A++ G   V
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEV 151

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTK-------MDIATTLLEYGAK 429
           +G TPLH  A+     V +LL+   A V+       TP          ++   L+  GA 
Sbjct: 36  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
            NA+   G TPLH +A  GH ++  +L+  GADV+ +  +G T L +A++ G   V
Sbjct: 96  VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEV 151

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +G TPLH+A+  G+  V  +LL+  ADVN   K+G TPLH+A+  G + +V  LL+  A+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
            +     G TPLHLAAR    +++++LL  GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 19/102 (18%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
           NG TPLHL A+   + V +LLL                   E GA  NA+   G TPLHL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-------------------EAGADVNAKDKNGRTPLHL 41
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           +A  GH ++  +LLE GADV+   K G T L +A + G++ V
Sbjct: 42  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 83

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL    ADVN +   G TPLH+A+ +G + IV  LL+N A+ +     G
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            TPLHLAA A+  +I+ +LL++GA V+A+ + G TA  I+   G   + E L
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
           G TPLHL A    + + E+LLKN                   GA  NA    G TPLHL+
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKN-------------------GADVNATGNTGRTPLHLA 87
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           A   H ++  +LL+HGADV+   K G TA  I+   G   + E L+
Sbjct: 88  AWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 59/100 (59%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN   K GLTPLH+A+    + IV  LL+N A+ +     G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           ETPLHL A     +I+ +LL++GA V+A+ + G TA  I+
Sbjct: 81  ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 19/108 (17%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
           K GLTPLHL A  D + + E+LLKN                   GA  NA    G TPLH
Sbjct: 45  KVGLTPLHLAAMNDHLEIVEVLLKN-------------------GADVNAIDAIGETPLH 85
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           L A  GH ++  +LL+HGADV+   K G TA  I+   G   + E L+
Sbjct: 86  LVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
           SK G TPLH A+  G+      LL K ADVN  +K G TPLH+A+  G   IV  LL   
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
           A+ +  +  G TP HLA +    +I+++L   GA V+AR+
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
           K+G TPLH  A+    G AE + K                LL  GA  NA S  G TPLH
Sbjct: 7   KDGNTPLHNAAKN---GHAEEVKK----------------LLSKGADVNARSKDGNTPLH 47
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
           L+A  GHA++  +LL  GADV+  +K+G+T   +A+K G+
Sbjct: 48  LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN    +G+TPLH+A+  G + IV  LL++ A+ +   + G
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            TPLHLAA     +I+ +LL  GA V+A+ + G TA  I+
Sbjct: 81  RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 19/106 (17%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
           G+TPLHL A+   + + E+LLK                   +GA  NA  + G TPLHL+
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLK-------------------HGADVNASDIWGRTPLHLA 87
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           A+ GH ++  +LLE+GADV+   K G TA  I+   G   + E L+
Sbjct: 88  ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN    +G+TPLH+A+  G + IV  LL++ A+ +   + G
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            TPLHLAA     +I+ +LL  GA V+A+ + G TA  I+
Sbjct: 81  RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 19/106 (17%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
           G+TPLHL A+   + + E+LLK                   +GA  NA  + G TPLHL+
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLK-------------------HGADVNARDIWGRTPLHLA 87
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           A+ GH ++  +LLE+GADV+   K G TA  I+   G   + E L+
Sbjct: 88  ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI 263
           + PD   + GFTPL  AS +G       LL+  AD +  AK   + L +AS  G  +IV 
Sbjct: 30  NKPD---ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
            LL+ D + +I    G TPL  A R N    +  LL  GA +   A  G+T + +A  LG
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Query: 324 YISVEE 329
           Y  V++
Sbjct: 147 YRKVQQ 152

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
           VN   + G TPL  AS  G +  V +LL+  A+P I     E+ L LA+    TDI+ +L
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358
           L     ++     G T L  A +  ++   E+L  A  + L      G+T + +A  LGY
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL-LARGADLTTEADSGYTPMDLAVALGY 147
Query: 359 ISVEESLK 366
             V++ ++
Sbjct: 148 RKVQQVIE 155

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN    +G+TPLH+A+  G + IV  LL++ A+ +     G
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            TPLHLAA     +I+ +LL  GA V+A+ + G TA  I+
Sbjct: 81  RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
           G+TPLHL A+   + + E+LLK                   +GA  NA    G TPLHL+
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLK-------------------HGADVNASDSWGRTPLHLA 87
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           A+ GH ++  +LLE+GADV+   K G TA  I+   G   + E L+
Sbjct: 88  ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN   + GLTPLH+A+ +G + IV  LL+  A+ +     G
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            TPLHLAA     +I+ +LL++GA V+A+ + G TA  I+
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 19/108 (17%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
           ++GLTPLHL AQ   + + E+LLK                   YGA  NAE   G TPLH
Sbjct: 45  EDGLTPLHLAAQLGHLEIVEVLLK-------------------YGADVNAEDNFGITPLH 85
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           L+A  GH ++  +LL+HGADV+   K G TA  I+   G   + E L+
Sbjct: 86  LAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 57/108 (52%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +G++PLHIA+  G + +   LL K A VN   ++G TPLH A+      I + LL+  AN
Sbjct: 72  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           PD       T +H AA      +I ILL   A  + +  EG+T L +A
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 77/208 (37%), Gaps = 40/208 (19%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
           T +   T LH A   G+  +   LL     VN    +G +PLH+A+  G   IV  LL  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
            A  +     G TPLH AA  N+ +I  +LL  GA  DA+     TA+  A   G     
Sbjct: 96  GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG----- 150
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTP 388
                                              +LK +   L        +   G TP
Sbjct: 151 -----------------------------------NLKMIHILLYYKASTNIQDTEGNTP 175
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTK 416
           LHL   E+RV  A+LL+   A +    K
Sbjct: 176 LHLACDEERVEEAKLLVSQGASIYIENK 203

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 83/212 (39%), Gaps = 54/212 (25%)
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
           T LH A  A  T+I+  LL+ G  V+ +   G + L IA   G   + ++L         
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL--------- 92
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
                          LG        KG     +        ++NG TPLH  A ++R  +
Sbjct: 93  ---------------LG--------KGAQVNAV--------NQNGCTPLHYAASKNRHEI 121
Query: 401 AELLLKNNAQVDTP-----TKMDIATT---------LLEYGAKPNAESVAGFTPLHLSAS 446
           A +LL+  A  D       T M  A           LL Y A  N +   G TPLHL+  
Sbjct: 122 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 181
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
           E   + + +L+  GA +    KE  T L +A+
Sbjct: 182 EERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 57/108 (52%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +G++PLHIA+  G + +   LL K A VN   ++G TPLH A+      I + LL+  AN
Sbjct: 73  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           PD       T +H AA      +I ILL   A  + +  EG+T L +A
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 77/208 (37%), Gaps = 40/208 (19%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
           T +   T LH A   G+  +   LL     VN    +G +PLH+A+  G   IV  LL  
Sbjct: 37  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
            A  +     G TPLH AA  N+ +I  +LL  GA  DA+     TA+  A   G     
Sbjct: 97  GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG----- 151
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTP 388
                                              +LK +   L        +   G TP
Sbjct: 152 -----------------------------------NLKMIHILLYYKASTNIQDTEGNTP 176
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTK 416
           LHL   E+RV  A+LL+   A +    K
Sbjct: 177 LHLACDEERVEEAKLLVSQGASIYIENK 204

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 83/212 (39%), Gaps = 54/212 (25%)
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
           T LH A  A  T+I+  LL+ G  V+ +   G + L IA   G   + ++L         
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL--------- 93
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
                          LG        KG     +        ++NG TPLH  A ++R  +
Sbjct: 94  ---------------LG--------KGAQVNAV--------NQNGCTPLHYAASKNRHEI 122
Query: 401 AELLLKNNAQVDTP-----TKMDIATT---------LLEYGAKPNAESVAGFTPLHLSAS 446
           A +LL+  A  D       T M  A           LL Y A  N +   G TPLHL+  
Sbjct: 123 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 182
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
           E   + + +L+  GA +    KE  T L +A+
Sbjct: 183 EERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 59/100 (59%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN   + GLTPL++A+  G + IV  LL+N A+ +     G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            TPLHLAA     +I  +LL++GA V+A+ + G TA  I+
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 19/97 (19%)
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
           K + GLTPL+L      + + E+LLKN                   GA  NA    GFTP
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKN-------------------GADVNAVDAIGFTP 83
Query: 441 LHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
           LHL+A  GH +++ +LL+HGADV+   K G TA  I+
Sbjct: 84  LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           +VTS+ G +PLH+A+ +G   +  +LL   A+          PLH+A   G   +V  LL
Sbjct: 80  NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL--SIAQKLGY 324
            ++A P+   + G TPL  A      +++ +LL++GA ++A   +G+TAL  ++ +K  +
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199
Query: 325 ISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI--------SVEESLKGVTET 371
           +     L  A    L KR R   TA+  A++   I        S   SL  V ET
Sbjct: 200 VVELLLLHGASVQVLNKRQR---TAVDCAEQNSKIMELLQVVPSCVASLDDVAET 251

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 28/142 (19%)
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA-----------------T 421
           G ++ +   PLHL  Q+    V + LL +NA+   P K D++                  
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAK---PNKKDLSGNTPLIYACSGGHHELVA 169
Query: 422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLG 481
            LL++GA  NA +  G T LH +  E H  +  +LL HGA V    K   TA+  A++  
Sbjct: 170 LLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS 229
Query: 482 YI--------SVEESLKGVTET 495
            I        S   SL  V ET
Sbjct: 230 KIMELLQVVPSCVASLDDVAET 251

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI 263
           + PD   + GFTPL  AS +G       LL+  AD +  AK   + L +AS  G  +IV 
Sbjct: 30  NKPD---ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
            LL+ D + +I    G TPL  A   N    +  LL  GA +   A  G+T + +A  LG
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Query: 324 YISVEE 329
           Y  V++
Sbjct: 147 YRKVQQ 152

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
           VN   + G TPL  AS  G +  V +LL+  A+P I     E+ L LA+    TDI+ +L
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358
           L     ++     G T L  A    ++   E+L  A  + L      G+T + +A  LGY
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL-LARGADLTTEADSGYTPMDLAVALGY 147
Query: 359 ISVEESLK 366
             V++ ++
Sbjct: 148 RKVQQVIE 155

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +G++PLHIA+  G + +   LL K A VN   ++G TPLH A+      I + LL+  AN
Sbjct: 72  AGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           PD       T +H AA      ++ ILL   A  + +  EG+T L +A
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 77/208 (37%), Gaps = 40/208 (19%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
           T +   T LH A   G+  +   LL     VN    +G +PLH+A+  G   IV  LL  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
            A+ +     G TPLH AA  N+ +I  +LL  GA  DA+     TA+  A   G     
Sbjct: 96  GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG----- 150
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTP 388
                                              +LK V   L        +   G TP
Sbjct: 151 -----------------------------------NLKMVHILLFYKASTNIQDTEGNTP 175
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTK 416
           LHL   E+RV  A+ L+   A +    K
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENK 203

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 54/212 (25%)
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
           T LH A  A  T+I+  LL+ G  V+ +   G + L IA   G   + ++L         
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL--------- 92
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
                                   +KG     +        ++NG TPLH  A ++R  +
Sbjct: 93  -----------------------LVKGAHVNAV--------NQNGCTPLHYAASKNRHEI 121
Query: 401 AELLLKNNAQVDTPTKMD--------------IATTLLEYGAKPNAESVAGFTPLHLSAS 446
           A +LL+  A  D     D              +   LL Y A  N +   G TPLHL+  
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
           E   + +  L+  GA +    KE  T L +A+
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
           A+  G +    IL+   ADVN + + G TPLH+A+    + IV  LL++ A+ +     G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            TPLHLAA     +I+ +LL++GA V+A+ + G TA  I+   G   + E L
Sbjct: 81  STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 19/108 (17%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
           + G TPLHL A  D + + E+LLK                   +GA  NA    G TPLH
Sbjct: 45  RKGNTPLHLAADYDHLEIVEVLLK-------------------HGADVNAHDNDGSTPLH 85
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           L+A  GH ++  +LL+HGADV+   K G TA  I+   G   + E L+
Sbjct: 86  LAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +G++PLHIA+  G + +   LL K A VN   ++G TPLH A+      I + LL+  AN
Sbjct: 72  AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           PD       T +H AA      ++ ILL   A  + +  EG+T L +A
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 77/208 (37%), Gaps = 40/208 (19%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
           T +   T LH A   G+  +   LL     VN    +G +PLH+A+  G   IV  LL  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
            A+ +     G TPLH AA  N+ +I  +LL  GA  DA+     TA+  A   G     
Sbjct: 96  GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG----- 150
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTP 388
                                              +LK V   L        +   G TP
Sbjct: 151 -----------------------------------NLKMVHILLFYKASTNIQDTEGNTP 175
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTK 416
           LHL   E+RV  A+ L+   A +    K
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENK 203

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 54/212 (25%)
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
           T LH A  A  T+I+  LL+ G  V+ +   G + L IA   G   + ++L         
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL--------- 92
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
                                   +KG     +        ++NG TPLH  A ++R  +
Sbjct: 93  -----------------------LVKGAHVNAV--------NQNGCTPLHYAASKNRHEI 121
Query: 401 AELLLKNNAQVDTPTKMD--------------IATTLLEYGAKPNAESVAGFTPLHLSAS 446
           A +LL+  A  D     D              +   LL Y A  N +   G TPLHL+  
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
           E   + +  L+  GA +    KE  T L +A+
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           TPLH A+ Y    V   LL   ADV+   K GL PLH A   G   +   L+++ A  ++
Sbjct: 46  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
             +   TPLH AA   + +I ++LL++GA    + R+G+T L + +
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 15/119 (12%)
Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAKPNA 432
           TPLH  A  +RV V E LL++ A V    K               ++A  L+++GA  N 
Sbjct: 46  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 433 ESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG 491
             +  FTPLH +A++G  ++  +LL+HGAD +   ++G+T L +  K G   +++ L+G
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRG 163

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           TPLH A+ Y    V   LL   ADV+   K GL PLH A   G   +   L+++ A  ++
Sbjct: 48  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
             +   TPLH AA   + +I ++LL++GA    + R+G+T L + +
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAKPNA 432
           TPLH  A  +RV V E LL++ A V    K               ++A  L+++GA  N 
Sbjct: 48  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 433 ESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV 492
             +  FTPLH +A++G  ++  +LL+HGAD +   ++G+T L +  K G   +++ L+G 
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGD 166
Query: 493 TETLIIAK 500
              L  AK
Sbjct: 167 AALLDAAK 174

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           TPLH A+ Y    V   LL   ADV+   K GL PLH A   G   +   L+++ A  ++
Sbjct: 44  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
             +   TPLH AA   + +I ++LL++GA    + R+G+T L + +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 15/119 (12%)
Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAKPNA 432
           TPLH  A  +RV V E LL++ A V    K               ++A  L+++GA  N 
Sbjct: 44  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 433 ESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG 491
             +  FTPLH +A++G  ++  +LL+HGAD +   ++G+T L +  K G   +++ L+G
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRG 161

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL--TPLHVASFMGCMNIVI 263
           P  T   G +PLH+A+ YG+     +LL  RA V+  A++ +  TPLH+A+  G  NIV 
Sbjct: 27  PFTTDWLGTSPLHLAAQYGHFSTTEVLL--RAGVSRDARTKVDRTPLHMAASEGHANIVE 84
Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            LL++ A+ +   +   T LH A   N  +++ +L++ GA V  +++   TA  I+
Sbjct: 85  VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMD--------------IATTLLEYGAKP 430
           G +PLHL AQ       E+LL+     D  TK+D              I   LL++GA  
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           NA+ +   T LH +    H ++  +L+++GADV   +K   TA  I+   G   + E L+
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 20/182 (10%)
Query: 191 GNA-ATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTP 249
           GNA A   +L   E++ +     GF+PLH A   G   V  +L+ + A +N   +   TP
Sbjct: 16  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 250 LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
           LH+A+  G  +IV  LLQ  A+ +     G  PLH A    Q  +   L+ NGA V    
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV---- 131
Query: 310 REGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL-KGV 368
                  SI  K G + V+++  A  R  L++R      A  + Q L  I  +++  KG 
Sbjct: 132 -------SICNKYGEMPVDKA-KAPLRELLRER------AEKMGQNLNRIPYKDTFWKGT 177
Query: 369 TE 370
           T 
Sbjct: 178 TR 179

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF 438
           G+ H  G +PLH   +E R  V E+L+   A+++   + D                    
Sbjct: 35  GDDH--GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD------------------- 73
Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL--KGVTETL 496
           TPLHL+AS GH D+   LL++ AD++   + G+  L  A   G   V E L   G   ++
Sbjct: 74  TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 497 IIAKGDGEKHKVVAP--EIMQE 516
               G+    K  AP  E+++E
Sbjct: 134 CNKYGEMPVDKAKAPLRELLRE 155

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVN---FSAKSGLTPLHVASFMGCMNIVIYLLQ 267
           + G  PLH +  +    + + LL K  +VN   +   SG TP H+A  +G + +V  L  
Sbjct: 34  QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 268 NDANPDIPTV--RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
               PD+  +  +G T LHLA      ++ + L+ NGA V  + +     L  A  +G +
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 326 SVEESLGAAERSQLKKRGREGHTAL 350
            + E L    +S +  + ++G T L
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVN---FSAKSGLTPLHVASFMGCMNIVIYLLQ 267
           + G  PLH +  +    + + LL K  +VN   +   SG TP H+A  +G + +V  L  
Sbjct: 34  QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 268 NDANPDIPTV--RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
               PD+  +  +G T LHLA      ++ + L+ NGA V  + +     L  A  +G +
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 326 SVEESLGAAERSQLKKRGREGHTAL 350
            + E L    +S +  + ++G T L
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVN---FSAKSGLTPLHVASFMGCMNIVIYLLQ 267
           + G  PLH +  +    + + LL K  +VN   +   SG TP H+A  +G + +V  L  
Sbjct: 34  QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 268 NDANPDIPTV--RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
               PD+  +  +G T LHLA      ++ + L+ NGA V  + +     L  A  +G +
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 326 SVEESLGAAERSQLKKRGREGHTAL 350
            + E L    +S +  + ++G T L
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 115/269 (42%), Gaps = 24/269 (8%)
Query: 232 LLDKRADVNFSAKSG-LTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           LL+  A+VNF  + G  TPLH A  M   +IV  LL++ A+P +    G TP  LAA A 
Sbjct: 24  LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83
Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL-GAAERSQLKKRGREGHTA 349
              ++++ L  GA V+     G TA   A   G +   + L        L+++ +E    
Sbjct: 84  SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 143
Query: 350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLK-NN 408
           L        +   E  KG  E L I   +     N       C    R  +   LL  ++
Sbjct: 144 LRKGGATALMDAAE--KGHVEVLKILLDEMGADVNA------CDNMGRNALIHALLSSDD 195
Query: 409 AQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG-ADVSHAA 467
           + V+  T +     LL++GA  N     G TPL L+  + H  +   LLE    +++   
Sbjct: 196 SDVEAITHL-----LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETL 496
            +G TAL +A       VE  LK + E L
Sbjct: 251 SDGKTALLLA-------VELKLKKIAELL 272

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 191 GNA-ATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTP 249
           GNA A   +L   E++ +     GF+PLH A   G   V  +L+ + A +N   +   TP
Sbjct: 11  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 250 LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
           LH+A+  G  +IV  LLQ  A+ +     G  PLH A    Q  +   L+ NGA V    
Sbjct: 71  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV---- 126
Query: 310 REGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
                  SI  K G + V+++  A  R  L++R  +
Sbjct: 127 -------SICNKYGEMPVDKA-KAPLRELLRERAEK 154

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF 438
           G+ H  G +PLH   +E R  V E+L+   A+++   + D                    
Sbjct: 30  GDDH--GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD------------------- 68
Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL--KGVTETL 496
           TPLHL+AS GH D+   LL++ AD++   + G+  L  A   G   V E L   G   ++
Sbjct: 69  TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 497 IIAKGDGEKHKVVAP--EIMQE 516
               G+    K  AP  E+++E
Sbjct: 129 CNKYGEMPVDKAKAPLRELLRE 150

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 61/130 (46%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
           I+ E+  + T + GFTPL  A+ +G   V   LL   AD     K   + L +A   G  
Sbjct: 23  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           +IV  LL    + +     G TPL  A   N    +++LL +GA        G+ ++ +A
Sbjct: 83  DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Query: 320 QKLGYISVEE 329
             LGY SV++
Sbjct: 143 VALGYRSVQQ 152

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGA 428
           + G TPL   A   ++ V E LL+N A      K               DI   LL+ G 
Sbjct: 34  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488
             N     G TPL  +    H     MLLE GAD +     G+ ++ +A  LGY SV++ 
Sbjct: 94  DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153
Query: 489 LK 490
           ++
Sbjct: 154 IE 155

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 61/130 (46%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
           I+ E+  + T + GFTPL  A+ +G   V   LL   AD     K   + L +A   G  
Sbjct: 21  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           +IV  LL    + +     G TPL  A   N    +++LL +GA        G+ ++ +A
Sbjct: 81  DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Query: 320 QKLGYISVEE 329
             LGY SV++
Sbjct: 141 VALGYRSVQQ 150

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGA 428
           + G TPL   A   ++ V E LL+N A      K               DI   LL+ G 
Sbjct: 32  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 91
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488
             N     G TPL  +    H     MLLE GAD +     G+ ++ +A  LGY SV++ 
Sbjct: 92  DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 151
Query: 489 LK 490
           ++
Sbjct: 152 IE 153

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 61/130 (46%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
           I+ E+  + T + GFTPL  A+ +G   V   LL   AD     K   + L +A   G  
Sbjct: 39  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           +IV  LL    + +     G TPL  A   N    +++LL +GA        G+ ++ +A
Sbjct: 99  DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Query: 320 QKLGYISVEE 329
             LGY SV++
Sbjct: 159 VALGYRSVQQ 168

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGA 428
           + G TPL   A   ++ V E LL+N A      K               DI   LL+ G 
Sbjct: 50  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 109
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488
             N     G TPL  +    H     MLLE GAD +     G+ ++ +A  LGY SV++ 
Sbjct: 110 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 169
Query: 489 LK 490
           ++
Sbjct: 170 IE 171

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
           G T L  A      G+A  LL K ++VN    SG TPL  +   G   +  +LL++ AN 
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
           +   + GETPL +A++  +++I++ LL  GA + AR   G TA + A+  G
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFG 178

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDT-------PTKMDI-------ATTLLE 425
           +K   G T L    + +R+G+AE LL   + V+T       P    I       +  LLE
Sbjct: 63  DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           +GA  N  ++ G TPL +++  G +++   LLE GAD+S     G TA + A+  G    
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR--- 179
Query: 486 EESLKGVTET 495
           +E +K  TE 
Sbjct: 180 QEVIKIFTEV 189

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 116 LENDTRGKDGFTPLAVAMQQG----------HDKVVAVL---------LENDTRGKVRLP 156
           ++ + RG DGFTPL +A   G           +   AV+         L N T  +    
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGAT 59
Query: 157 ALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGG-------YLIKNEH-NPDV 208
           ALH+              E S   +    +  T  +AA           LI+N   + D 
Sbjct: 60  ALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
               G TPL +A+    EG+   L++  ADVN     G + LH A+ +  ++  + LL+N
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
            AN D+   R ETPL LAAR    +  ++LL + A  D           IAQ+
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 98/243 (40%), Gaps = 47/243 (19%)
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV-----------------RGE 280
           DVN     G TPL +AS   C    +    ++   D P V                  G 
Sbjct: 2   DVNVRGPDGFTPLMIAS---CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGA 58
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
           T LHLAA  +++D  + LL   A  + +   G T L  A       V + L     + L 
Sbjct: 59  TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVG 399
            R  +G T L +A +L       +++G+ E LI +  D     + G + LH  A  + V 
Sbjct: 119 ARMHDGTTPLILAARL-------AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
            A +LLKN A  D                + N E     TPL L+A EG  + + +LL+H
Sbjct: 172 AAVVLLKNGANKDM---------------QNNREE----TPLFLAAREGSYETAKVLLDH 212
Query: 460 GAD 462
            A+
Sbjct: 213 FAN 215

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 53/100 (53%)
Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ 267
            T+  G T LHIAS  G+      LL   +D N    +G TPLH A   G + +V  LLQ
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 268 NDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
           + A  +    + ++PLH AA+    DI+++LL  GA  +A
Sbjct: 65  HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 416 KMDIATT--LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTA 473
           K DI +   LL+ G+ PN +  AG+TPLH + + GH  +  +LL+H A V+    +  + 
Sbjct: 20  KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79
Query: 474 LSIAQKLGYISV 485
           L  A K G++ +
Sbjct: 80  LHDAAKNGHVDI 91

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 116 LENDTRGKDGFTPLAVAMQQG----------HDKVVAVL---------LENDTRGKVRLP 156
           ++ + RG DGFTPL +A   G           +   AV+         L N T  +    
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGET 59
Query: 157 ALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGG-------YLIKNEH-NPDV 208
           ALH+              E S   +    +  T  +AA           LI+N   + D 
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
               G TPL +A+    EG+   L++  ADVN     G + LH A+ +  ++  + LL+N
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
            AN D+   R ETPL LAAR    +  ++LL + A  D           IAQ+
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 100/243 (41%), Gaps = 47/243 (19%)
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV-----------------RGE 280
           DVN     G TPL +AS   C    +    ++   D P V                  GE
Sbjct: 2   DVNVRGPDGFTPLMIAS---CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE 58
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
           T LHLAAR +++D  + LL   A  + +   G T L  A       V + L     + L 
Sbjct: 59  TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVG 399
            R  +G T L +A +L       +++G+ E LI +  D     + G + LH  A  + V 
Sbjct: 119 ARMHDGTTPLILAARL-------AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
            A +LLKN A  D                + N E     TPL L+A EG  + + +LL+H
Sbjct: 172 AAVVLLKNGANKDM---------------QNNREE----TPLFLAAREGSYETAKVLLDH 212
Query: 460 GAD 462
            A+
Sbjct: 213 FAN 215

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 116 LENDTRGKDGFTPLAVAMQQG----------HDKVVAVL---------LENDTRGKVRLP 156
           ++ + RG DGFTPL +A   G           +   AV+         L N T  +    
Sbjct: 2   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGET 60
Query: 157 ALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGG-------YLIKNEH-NPDV 208
           ALH+              E S   +    +  T  +AA           LI+N   + D 
Sbjct: 61  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
               G TPL +A+    EG+   L++  ADVN     G + LH A+ +  ++  + LL+N
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 180
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
            AN D+   R ETPL LAAR    +  ++LL + A  D           IAQ+
Sbjct: 181 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 233

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 100/243 (41%), Gaps = 47/243 (19%)
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV-----------------RGE 280
           DVN     G TPL +AS   C    +    ++   D P V                  GE
Sbjct: 3   DVNVRGPDGFTPLMIAS---CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE 59
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
           T LHLAAR +++D  + LL   A  + +   G T L  A       V + L     + L 
Sbjct: 60  TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVG 399
            R  +G T L +A +L       +++G+ E LI +  D     + G + LH  A  + V 
Sbjct: 120 ARMHDGTTPLILAARL-------AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 172
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
            A +LLKN A  D                + N E     TPL L+A EG  + + +LL+H
Sbjct: 173 AAVVLLKNGANKDM---------------QNNREE----TPLFLAAREGSYETAKVLLDH 213
Query: 460 GAD 462
            A+
Sbjct: 214 FAN 216

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
            +G TPLH A      GV  ILL  RA ++N     G TPL +A+ +    +V  L+  D
Sbjct: 82  NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 141
Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
           A+ +     G+T LH AA  N T+ + ILL + A  DA+  +  T L +A + G     +
Sbjct: 142 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK 201
Query: 330 SL 331
           +L
Sbjct: 202 AL 203

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 95/234 (40%), Gaps = 43/234 (18%)
Query: 246 GLTPLHVASFMG---------------CMNIVIYLLQNDANPDIPTVR-GETPLHLAARA 289
           GLTPL +A+  G                  ++  LL   A  +    + GET LHLAAR 
Sbjct: 2   GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 290 NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTA 349
            + D  + LL  GA  +++   G T L  A     + V + L     + L  R  +G T 
Sbjct: 62  ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP 121
Query: 350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVGVAELLLKNN 408
           L +A +L       +++G+ E LI A  D     N G T LH  A  +      +LL ++
Sbjct: 122 LILAARL-------AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH 174
Query: 409 AQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGAD 462
           A  D     D                    TPL L+A EG  + S  LL++ A+
Sbjct: 175 ANRDAQDDKD-------------------ETPLFLAAREGSYEASKALLDNFAN 209

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 54/287 (18%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
           G+TPLH A     E +  +LL   AD     K+G TP  +A+  G + ++   L   A+ 
Sbjct: 59  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332
           +     G T    AA   +   ++ L + GA V+ R +                      
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK---------------------- 156
Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLC 392
             E  +  ++G  G TAL  A + G++        V + L+   G           ++ C
Sbjct: 157 TKEDQERLRKG--GATALMDAAEKGHVE-------VLKILLDEMG---------ADVNAC 198
Query: 393 AQEDRVGVAELLL-KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
               R  +   LL  +++ V+  T +     LL++GA  N     G TPL L+  + H  
Sbjct: 199 DNMGRNALIHALLSSDDSDVEAITHL-----LLDHGADVNVRGERGKTPLILAVEKKHLG 253
Query: 452 MSAMLLEHG-ADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
           +   LLE    +++    +G TAL +A       VE  LK + E L 
Sbjct: 254 LVQRLLEQEHIEINDTDSDGKTALLLA-------VELKLKKIAELLC 293

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG- 257
           L+K   +P +    G + +H+A+ +G+  +   L+ K  DV+   ++G+TPL  A++   
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 258 CMNIVIYLLQNDANPDI-PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
            ++    LL  + + ++       T LH A  A  T +I +LL  GA VDA+  +G +AL
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Query: 317 SIAQK 321
            +A++
Sbjct: 215 DLAKQ 219

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 45/216 (20%)
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARARE-GHTALSIAQKLGYISVEESLGA 333
           P     T LH AA  N+ D+++  +  GA VD    +   T L  A + G++S+      
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV----- 92
Query: 334 AERSQLKKRGR-------EGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG--EKHKN 384
               QL K G        EG + + +A + G+ S+   L        IAKG       +N
Sbjct: 93  ---VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL--------IAKGQDVDMMDQN 141
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPN-AESVAGFTPLHL 443
           G+TPL   A                 VD PT++     LL +    N  +     T LH 
Sbjct: 142 GMTPLMWAAYRTH------------SVD-PTRL-----LLTFNVSVNLGDKYHKNTALHW 183
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
           +   G+  + ++LLE GA+V     +G +AL +A++
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           + G T L V  F G   + + LL+  A+P++    G +P+H AAR    D +++L+ +GA
Sbjct: 42  RFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGA 100
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
            V+A    G   + +A + G+ SV   L  A  S L  R   G T L +A++ G  ++ +
Sbjct: 101 DVNALDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMD 158
Query: 364 SLKG 367
            L+G
Sbjct: 159 ILQG 162

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
           +A  LL+ GA PN +  +G +P+H +A  G  D   +L+EHGADV+     G   + +A 
Sbjct: 58  VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 479 KLGYISV 485
           + G+ SV
Sbjct: 118 REGHSSV 124

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
           GN      L+    NPD+  ++GF  +H A+  G       LL+ +ADVN     G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 251 HVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           H+A+  G + +V +L+++ A N      +G+T   LA    + +++ ++  NGA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
           G T L V   +G   I   LL   ANPD+    G   +H AARA Q D ++ LL   A V
Sbjct: 38  GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
           +    EG+  L +A K G++ V E L     S +  R  +G TA  +A+  G   V
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 416 KMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTAL 474
           ++D   TLLE+ A  N E   G  PLHL+A EGH  +   L++H A +V H   +G TA 
Sbjct: 82  QLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 475 SIAQKLGYISV 485
            +A+  G   V
Sbjct: 142 DLARLYGRNEV 152

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           + G T L V  F G   + + LL+  A+P++    G +P+H AAR    D +++L+ +GA
Sbjct: 40  RFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGA 98
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
            V+A    G   + +A + G+ SV   L  A  S L  R   G T L +A++ G  ++ +
Sbjct: 99  DVNALDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMD 156
Query: 364 SLKG 367
            L+G
Sbjct: 157 ILQG 160

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
           +A  LL+ GA PN +  +G +P+H +A  G  D   +L+EHGADV+     G   + +A 
Sbjct: 56  VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 479 KLGYISV 485
           + G+ SV
Sbjct: 116 REGHSSV 122

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
           GN      L+    NPD+  ++GF  +H A+  G       LL+ +ADVN     G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 251 HVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           H+A+  G + +V +L+++ A N      +G+T   LA    + +++ ++  NGA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
           G T L V   +G   I   LL   ANPD+    G   +H AARA   D ++ LL N A V
Sbjct: 38  GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
           +    EG+  L +A K G++ V E L     S +  R  +G TA  +A+  G   V
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
           +IA  LL  GA P+ +   GF  +H +A  G  D    LLE+ ADV+    EG+  L +A
Sbjct: 51  EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLA 110
Query: 478 QKLGYISVEESL 489
            K G++ V E L
Sbjct: 111 AKEGHLRVVEFL 122

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
           GN      L+    NPD+  ++GF  +H A+  G       LL+ +ADVN     G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 251 HVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           H+A+  G + +V +L+++ A N      +G+T   LA    + +++ ++  NGA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
           G T L V   +G   I   LL   ANPD+    G   +H AARA   D ++ LL   A V
Sbjct: 38  GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
           +    EG+  L +A K G++ V E L     S +  R  +G TA  +A+  G   V
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTALS 475
           +D   TLLE+ A  N E   G  PLHL+A EGH  +   L++H A +V H   +G TA  
Sbjct: 83  LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 476 IAQKLGYISV 485
           +A+  G   V
Sbjct: 143 LARLYGRNEV 152

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 30/247 (12%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           S ++P+H A+ +G++     L+ +   VN      ++PLH A   G ++ V  LL++ A 
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            +  T    TPL  A  +   D + +LL++GA V   +    + +  A + G++    SL
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 176
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL 391
                  +   G   H    +   L Y++ E   +   + L+ +  D  + K   +PLH 
Sbjct: 177 -------IAYGGNIDHKISHLGTPL-YLACENQQRACVKKLLESGADVNQGKGQDSPLH- 227
Query: 392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
                            A V T ++ ++A  L+++GA   A++  G  P+ L   E  + 
Sbjct: 228 -----------------AVVRTASE-ELACLLMDFGADTQAKNAEGKRPVELVPPE--SP 267
Query: 452 MSAMLLE 458
           ++ + LE
Sbjct: 268 LAQLFLE 274

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
           GN      L+    NPD+  ++GF  +H A+  G       LL+ +ADVN     G  PL
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 251 HVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           H+A+  G + +V +L+++ A N      +G+T   LA    + +++ ++  NGA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
           G T L V   +G   I   LL   ANPD+    G   +H AARA   D ++ LL   A V
Sbjct: 38  GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
           +    EG+  L +A K G++ V E L     S +  R  +G TA  +A+  G   V
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTALS 475
           +D   TLLE+ A  N E   G  PLHL+A EGH  +   L++H A +V H   +G TA  
Sbjct: 83  LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 476 IAQKLGYISV 485
           +A+  G   V
Sbjct: 143 LARLYGRNEV 152

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           D     G TPL+IA H  +  +A  L+D+ AD+N       +P   A   G   I+ Y+L
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 267 QNDANPDIP--TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY 324
           ++ A PD+      G   L  AA     D +++LL +G       RE    +      GY
Sbjct: 93  KH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG-------RED---IDFQNDFGY 141
Query: 325 ISVEESLGAAERSQLKK---------------RGREGHTALSIAQKLGYISVEESL 365
            ++ E++G  E +QL +               +   G TA+  A + GY  + + L
Sbjct: 142 TALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAK 244
           L++    +     L++   + ++    G TPLH A     +GV  IL+  RA D++    
Sbjct: 31  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 90
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
            G TPL +A+ +    ++  L+ + A+ +     G++ LH AA  N  D   +LL+NGA 
Sbjct: 91  DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Query: 305 VDARAREGHTALSIAQKLG 323
            D +     T L +A + G
Sbjct: 151 KDMQNNREETPLFLAAREG 169

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 18/185 (9%)
Query: 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
           N + ++G T LH+A+     +    LL+  A+ +I    G TPLH A  A+   + +IL+
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 300 RNGA-QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358
           RN A  +DAR  +G T L +A +L    + E L               H  ++    LG 
Sbjct: 79  RNRATDLDARMHDGTTPLILAARLAVEGMLEDLI------------NSHADVNAVDDLGK 126
Query: 359 ISVE---ESLKGVTETLIIAKGDGEKHKNGL--TPLHLCAQEDRVGVAELLLKNNAQVDT 413
            ++             +++  G  +  +N    TPL L A+E     A++LL + A  D 
Sbjct: 127 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 186
Query: 414 PTKMD 418
              MD
Sbjct: 187 TDHMD 191

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
           GET LHLAAR +++D  + LL   A  + +   G T L  A       V + L     + 
Sbjct: 25  GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDR 397
           L  R  +G T L +A +L       +++G+ E LI +  D     + G + LH  A  + 
Sbjct: 85  LDARMHDGTTPLILAARL-------AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
           V  A +LLKN A  D                + N E     TPL L+A EG  + + +LL
Sbjct: 138 VDAAVVLLKNGANKDM---------------QNNREE----TPLFLAAREGSYETAKVLL 178
Query: 458 EHGAD 462
           +H A+
Sbjct: 179 DHFAN 183

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 216 PLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIP 275
           PLH A+  GN       LD R  VN   K+G T L+ A   G  +IV  L      P+I 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF---TQPNIE 132
Query: 276 TVR----GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
             +    G+T LH AA     DI+++LL  GA+ D R        +I +KL +   + + 
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR--------NIEKKLAF---DXAT 181
Query: 332 GAAERSQLKKR-GREGHTALSIAQKLGYISVEES 364
            AA  S LKK+ G +    LS A+   Y+  E+S
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAED--YLDDEDS 213

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 37/252 (14%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLL----QNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
           + G TPLH+A   G +  V  L+    Q     DI     +TPLHLA       ++R+L+
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 300 RNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKL 356
             GA   A  R G TA  +A +    +   +L    A     L+ R  +G TAL +A   
Sbjct: 67  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN- 125
Query: 357 GYISVEESLKGVTETLIIAKG---DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDT 413
                +E+++     L++ +G   D    K+G +PL    + + + + +LLL        
Sbjct: 126 --TECQETVQ-----LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-------- 170
Query: 414 PTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTA 473
                      ++GA  NA+  +G + LH ++  G   +   L+  GAD S       T 
Sbjct: 171 -----------QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219
Query: 474 LSIAQKLGYISV 485
           L +A+    I +
Sbjct: 220 LMVARSRRVIDI 231

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           + G T L V  F G   I + LL+  A+P++    G +P+H AAR    D +++L+ +GA
Sbjct: 34  RFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA 92
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
            V+     G   + +A + G+ +V   L A   S L +R   G T L +A + G   + +
Sbjct: 93  DVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVD 150
Query: 364 SLKG 367
            L+G
Sbjct: 151 ILQG 154

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS-----------HAA 467
           IA  LL+ GA PN +  +G +P+H +A  G  D   +L+EHGADV+            A 
Sbjct: 50  IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Query: 468 KEGHTALSIAQKLGYISVEESL 489
           +EGHTA+     + +++ E  L
Sbjct: 110 QEGHTAV-----VSFLAAESDL 126

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 30/247 (12%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           S ++P+H A+ +G++     L+ +   VN      ++PLH A   G ++ V  LL++ A 
Sbjct: 2   SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            +  T    TPL  A  +   D + +LL++GA V   +    + +  A + G++    SL
Sbjct: 62  VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 120
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL 391
                  +   G   H    +   L Y++ E   +   + L+ +  D  + K   +PLH 
Sbjct: 121 -------IAYGGNIDHKISHLGTPL-YLACENQQRACVKKLLESGADVNQGKGQDSPLHA 172
Query: 392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
            A   R    EL                A  L+++GA   A++  G  P+ L   E  + 
Sbjct: 173 VA---RTASEEL----------------ACLLMDFGADTQAKNAEGKRPVELVPPE--SP 211
Query: 452 MSAMLLE 458
           ++ + LE
Sbjct: 212 LAQLFLE 218

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           + G T L V  F G   I + LL+  A+P++    G +P+H AAR    D +++L+ +GA
Sbjct: 40  RFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA 98
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
            V+     G   + +A + G+ +V   L A   S L +R   G T L +A + G   + +
Sbjct: 99  DVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVD 156
Query: 364 SLKG 367
            L+G
Sbjct: 157 ILQG 160

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS-----------HAA 467
           IA  LL+ GA PN +  +G +P+H +A  G  D   +L+EHGADV+            A 
Sbjct: 56  IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
Query: 468 KEGHTAL 474
           +EGHTA+
Sbjct: 116 QEGHTAV 122

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
           D    L+  GA  NA+   G+TPLHL+A EGH ++  +LL+ GADV+   K G TA  I+
Sbjct: 16  DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Query: 478 QKLGYISVEESLK 490
              G   + E L+
Sbjct: 76  IDNGNEDLAEILQ 88

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           TPLH+A       +A  LL    D       G TPLH+A   GC+  V  L Q+   P +
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 275 PTV------RGETPLHLAARANQTDIIRILLRNGAQVDAR-AREGHTALSIA---QKLGY 324
            ++       G T LHLA+      I+ +L+  GA V+A+    G TAL +A   Q    
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 325 ISVEESLGAAERSQLKKRGRE------GHTALSIAQKLGYISVE 362
           +S+    G A+ +++  +G        G  +  I Q+LG +++E
Sbjct: 167 VSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 63/217 (29%)
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
           +TPLHLA   NQ +I   LL  G   + R   G+T L +A + G ++   S+G   +S  
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA---SVGVLTQSCT 102
Query: 340 KKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG 399
                      SI +   Y                         NG T LHL +    +G
Sbjct: 103 TPHLH------SILKATNY-------------------------NGHTCLHLASIHGYLG 131
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNA-ESVAGFTPLHLSASEGHADMSAMLLE 458
           + ELL+                     GA  NA E   G T LHL+    + D+ ++LL+
Sbjct: 132 IVELLVS-------------------LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Query: 459 HGADVSHAAKEGHTALS---------IAQKLGYISVE 486
            GADV+    +G++            I Q+LG +++E
Sbjct: 173 CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           TPLH+A       +A  LL    D       G TPLH+A   GC+  V  L Q+   P +
Sbjct: 44  TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 275 PTV------RGETPLHLAARANQTDIIRILLRNGAQVDAR-AREGHTALSIA---QKLGY 324
            ++       G T LHLA+      I+ +L+  GA V+A+    G TAL +A   Q    
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 163
Query: 325 ISVEESLGAAERSQLKKRGRE------GHTALSIAQKLGYISVE 362
           +S+    G A+ +++  +G        G  +  I Q+LG +++E
Sbjct: 164 VSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 206

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 61/216 (28%)
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
           +TPLHLA   NQ +I   LL  G   + R   G+T L +A + G ++   S+G   +S  
Sbjct: 43  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA---SVGVLTQSCT 99
Query: 340 KKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG 399
                      SI +   Y                         NG T LHL +    +G
Sbjct: 100 TPHLH------SILKATNY-------------------------NGHTCLHLASIHGYLG 128
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
           + ELL+   A V+                    E   G T LHL+    + D+ ++LL+ 
Sbjct: 129 IVELLVSLGADVNA------------------QEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 460 GADVSHAAKEGHTALS---------IAQKLGYISVE 486
           GADV+    +G++            I Q+LG +++E
Sbjct: 171 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 206

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
           N + ++G T LH+A+     +    LL+  A+  I    G TPLH A  A+   + +ILL
Sbjct: 16  NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 300 RNGA-QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358
           RN A  +DAR  +G T L +A +L    + E L               H  ++    LG 
Sbjct: 76  RNRATDLDARMHDGTTPLILAARLALEGMLEDLI------------NSHADVNAVDDLGK 123
Query: 359 ISVE---ESLKGVTETLIIAKGDGEKHKNGL--TPLHLCAQEDRVGVAELLLKNNAQVDT 413
            ++             +++  G  +  +N    TPL L A+E     A++LL + A  D 
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDI 183
Query: 414 PTKMD 418
              MD
Sbjct: 184 TDHMD 188

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 27/185 (14%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
           GET LHLAAR +++D  + LL   A    +   G T L  A       V + L     + 
Sbjct: 22  GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDR 397
           L  R  +G T L +A +L       +L+G+ E LI +  D     + G + LH  A  + 
Sbjct: 82  LDARMHDGTTPLILAARL-------ALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 134
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
           V  A +LLKN A  D                + N E     TPL L+A EG  + + +LL
Sbjct: 135 VDAAVVLLKNGANKDM---------------QNNKEE----TPLFLAAREGSYETAKVLL 175
Query: 458 EHGAD 462
           +H A+
Sbjct: 176 DHFAN 180

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 16/124 (12%)
Query: 211 KSGFTPLHIASHYGNEG-----VANILLDKRADVNFSAKS--------GLTPLHVASFMG 257
           ++G T L I +H  NEG      A +L++K A V++   +        G T LH A+ + 
Sbjct: 233 RNGXTALXIVAH--NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290
Query: 258 CMNIVIYLL-QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
              IV YL+ +  +N D     G+TP+ LAA+  + +++  L++ GA V+A     HTA 
Sbjct: 291 NXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTAR 350
Query: 317 SIAQ 320
            +AQ
Sbjct: 351 QLAQ 354

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 94/246 (38%), Gaps = 52/246 (21%)
Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
           ADVN       TPL +A       +V YL +  A+P I      + LH AA AN+     
Sbjct: 157 ADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAA-ANRDFGXX 215
Query: 297 ILLRNGAQ----VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSI 352
           +   N  +    ++   R G TAL I                          EG   ++ 
Sbjct: 216 VYXLNSTKLKGDIEELDRNGXTALXIVAH----------------------NEGRDQVAS 253
Query: 353 AQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD 412
           A+ L    VE+  K   +    A+ D EK+K G T LH  AQ     + + L+       
Sbjct: 254 AKLL----VEKGAK--VDYDGAARKDSEKYK-GRTALHYAAQVSNXPIVKYLVG------ 300
Query: 413 TPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHT 472
                       E G+  + +   G TP+ L+A EG  ++   L++ GA V       HT
Sbjct: 301 ------------EKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHT 348
Query: 473 ALSIAQ 478
           A  +AQ
Sbjct: 349 ARQLAQ 354

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 57/115 (49%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           D     G TPL +A+    EG+   L++  ADVN     G + LH A+ +  ++  + LL
Sbjct: 9   DARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 68
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
           +N AN D+   + ETPL LAAR    +  ++LL + A  D           IAQ+
Sbjct: 69  KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 123

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           ++IV +L+QN  N D  T +G T LH     +  + +++LLR  A ++     G T L I
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244
Query: 319 AQKLGYISVEESLGAA 334
           A++L +   EE L  A
Sbjct: 245 AKRLKHEHCEELLTQA 260

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
           G T L V   +G   I   LL   ANPD+    G   +H AARA   D ++ LL   A V
Sbjct: 38  GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
           +    EG+  L +A K G++ V E L     S +  R  +G TA  +A+  G   V
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTALS 475
           +D   TLLE+ A  N E   G  PLHL+A EGH  +   L++H A +V H   +G TA  
Sbjct: 83  LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 476 IAQKLGYISV 485
           +A+  G   V
Sbjct: 143 LARLYGRNEV 152

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + +V +++QN  + D     G T LH AA  NQ D +++LL+  A V      G TAL I
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 319 AQKLGYISVEESLGAAE 335
           A+K  +   EE L  A+
Sbjct: 266 ARKKHHKECEELLEQAQ 282

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKS-----GLTPLHVASFMGCMNIVIYLLQ 267
           G T LHIA+ Y N   A +L++   ++ F   +     G T LH+A     +N+V  LL 
Sbjct: 37  GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 268 NDAN-------------PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHT 314
             A+             P      GE PL  AA     +I+R+L+ +GA + A+   G+T
Sbjct: 97  RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Query: 315 ALSI 318
            L I
Sbjct: 157 VLHI 160

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           + +V +++QN  + D     G T LH AA  NQ D +++LL+  A V      G TAL I
Sbjct: 187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246
Query: 319 AQKLGYISVEESLGAAE 335
           A+K  +   EE L  A+
Sbjct: 247 ARKKHHKECEELLEQAQ 263

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 185 VLSSTTGNAATGGYLI--KNEHNP----------DVTSKSGFTPLHIASHYGNEGVANIL 232
           ++ S T       YLI  K+ H+P          DV S+   TP   A+   +E   + L
Sbjct: 6   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE-TPWWTAARKADEQALSQL 64
Query: 233 LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE-TPLHLAARANQ 291
           L+ R DV+   ++G T L   + +G    V  L +  A+ D   +RG  T LH+AA   +
Sbjct: 65  LEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123
Query: 292 TDIIRILLRNGAQVDARAREGHTALSIAQKL 322
            +++  L+  GA ++     G TAL +A+++
Sbjct: 124 PEVVEALVELGADIEVEDERGLTALELAREI 154

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
           D    L+  GA   A+   G TPLHL+A  GH ++  +LLE GADV+   K G TA  I+
Sbjct: 20  DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Query: 478 QKLGYISVEESLK 490
              G   + E L+
Sbjct: 80  IDNGNEDLAEILQ 92

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
           D    L+  GA   A+   G TPLHL+A  GH ++  +LLE GADV    K G TA  I+
Sbjct: 38  DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Query: 478 QKLGYISVEESLK 490
              G   + E L+
Sbjct: 98  IDNGNEDLAEILQ 110

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 185 VLSSTTGNAATGGYLI--KNEHNPDVTSKSGF---------TPLHIASHYGNEGVANILL 233
           ++ S T       YLI  K+ H+P     S           TP   A+   +E   + LL
Sbjct: 5   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL 64
Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE-TPLHLAARANQT 292
           + R DV+   ++G T L   + +G    V  L +  A+ D   +RG  T LH+AA   + 
Sbjct: 65  EDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123
Query: 293 DIIRILLRNGAQVDARAREGHTALSIAQKL 322
           +++  L+  GA ++     G TAL +A+++
Sbjct: 124 EVVEALVELGADIEVEDERGLTALELAREI 153

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 214 FTPLHIA-----SHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
           F PL +A     S  G   +   ++ +  D +     G+T LH A   G   IV +L+Q 
Sbjct: 33  FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR-EGHTALSIAQKL--GYI 325
             N +     G TPLH AA  N   + + L+ +GA V A    +  TA    +++  GY 
Sbjct: 93  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152
Query: 326 SVEESL-GAAERSQLKKRG 343
              + L G  E+  +  +G
Sbjct: 153 QCSQFLYGVQEKMGIMNKG 171

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV-SHAAKEGHTALSI 476
           +I   L+++G   NA    G+TPLH +AS  +  +   L+E GA V +    +  TA   
Sbjct: 84  EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143
Query: 477 AQKL--GYISVEESLKGVTETL-IIAKG 501
            +++  GY    + L GV E + I+ KG
Sbjct: 144 CEEMEEGYTQCSQFLYGVQEKMGIMNKG 171

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA-ERSQLKK 341
           +H+AAR  QTD +R L+  G     + R G TAL +A K G +   + L +  E   L  
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83
Query: 342 RGREGHTALSIAQKLGYISVEESLK---GVTETLIIAKGDGE--------KHKNGLTPLH 390
             +  H A+   +    +++ E  K      E+L+    + E        KH  G T LH
Sbjct: 84  GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPL 441
            C     VG+             P  ++    L++ GA P A+  A  TPL
Sbjct: 144 WC-----VGLG------------PEYLEXIKILVQLGASPTAKDKADETPL 177

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 214 FTPLHI---ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270
           F PL +   +S  G   +   ++ +  D +     G+T LH A   G   IV +L+Q   
Sbjct: 35  FNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 271 NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR-EGHTALSIAQKL--GYISV 327
           N +     G TPLH AA  N   + + L+ +GA V A    +  TA    +++  GY   
Sbjct: 95  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154
Query: 328 EESL-GAAERSQLKKRG 343
            + L G  E+  +  +G
Sbjct: 155 SQFLYGVQEKMGIMNKG 171

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV-SHAAKEGHTALSI 476
           +I   L+++G   NA    G+TPLH +AS  +  +   L+E GA V +    +  TA   
Sbjct: 84  EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143
Query: 477 AQKL--GYISVEESLKGVTETL-IIAKG 501
            +++  GY    + L GV E + I+ KG
Sbjct: 144 CEEMEEGYTQCSQFLYGVQEKMGIMNKG 171

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 101/270 (37%), Gaps = 44/270 (16%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           ++ G T LH+A  + +E   + LL   A    ++     G T LH+A+ +G  + V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILL-------RNGAQV------DARAREGH 313
              A   +    G T LHLA R        +LL       R+ +        D      H
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 314 TALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLI 373
              ++  +    + EE      R QL+    +GHT L       +++V      +   L 
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL-------HVAVIHKDAEMVRLLR 178
Query: 374 IAKGDGEKHKN--GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPN 431
            A  D  K +   G TPLHL  +     V ELLLK                    GA P 
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-------------------GADPT 219
Query: 432 AESVAGFTPLHLSASEGHADMSAMLLEHGA 461
           A    G TPL  +    +  ++ +L  HGA
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 101/270 (37%), Gaps = 44/270 (16%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           ++ G T LH+A  + +E   + LL   A    ++     G T LH+A+ +G  + V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILL-------RNGAQV------DARAREGH 313
              A   +    G T LHLA R        +LL       R+ +        D      H
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 314 TALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLI 373
              ++  +    + EE      R QL+    +GHT L       +++V      +   L 
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL-------HVAVIHKDAEMVRLLR 178
Query: 374 IAKGDGEKHKN--GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPN 431
            A  D  K +   G TPLHL  +     V ELLLK                    GA P 
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-------------------GADPT 219
Query: 432 AESVAGFTPLHLSASEGHADMSAMLLEHGA 461
           A    G TPL  +    +  ++ +L  HGA
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
           K  DVN + + G  PLH A+  G + I+ +LL   A+ + P     TPL  A        
Sbjct: 24  KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 83
Query: 295 IRILLRNGAQVDARAREGHTAL 316
           +++LL  GA    +  +G TAL
Sbjct: 84  VKLLLSKGADKTVKGPDGLTAL 105

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           + G+T LH A      +IV +L+   AN + P   G TPLH AA  N T I   L+++GA
Sbjct: 52  EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Query: 304 QVDARA-REGHTALSIAQ--KLGYISVEESLGAAERS 337
            + A    +G TA       + GY      L   E+S
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 237 ADVNF--SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
           ADVN+    +   TPL  A+    +    +LLQN AN +     G  PLH A     T +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 295 IRILLRNGAQVDARAREGHTALSIAQK 321
             + L+ GA + AR  EG   L+IA +
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAME 310

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 237 ADVNF--SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
           ADVN+    +   TPL  A+    +    +LLQN AN +     G  PLH A     T +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 295 IRILLRNGAQVDARAREGHTALSIAQK 321
             + L+ GA + AR  EG   L+IA +
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAME 310

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 237 ADVNF--SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
           ADVN+    +   TPL  A+    +    +LLQN AN +     G  PLH A     T +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 295 IRILLRNGAQVDARAREGHTALSIAQK 321
             + L+ GA + AR  EG   L+IA +
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAME 310

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
           K  DVN + + G  PLH A+  G + I+ +LL   A+ + P     TPL  A        
Sbjct: 29  KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 88
Query: 295 IRILLRNGAQVDARAREGHTAL 316
           +++LL  GA    +  +G TA 
Sbjct: 89  VKLLLSKGADKTVKGPDGLTAF 110

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET-PLHLAARAN 290
           LL+  A+ N     G  P+ V   MG   +   LL + A P+       T P+H AAR  
Sbjct: 31  LLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG 89
Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
             D + +L R GA++D R   G   + +A++LG+  V   L AA
Sbjct: 90  FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	529
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-102
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-84
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-80
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-60
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-47
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-76
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-63
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-56
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-47
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-60
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-53
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-50
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-60
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-57
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-56
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-60
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-52
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-45
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-58
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-55
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-53
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-58
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-50
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-46
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-56
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-55
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-53
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-45
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-55
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-55
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-42
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-55
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-46
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-45
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-52
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-49
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-44
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-41
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-52
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-51
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-51
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-45
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-49
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-49
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-41
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-16
2rfa_A	232	Transient receptor potential cation channel subfa	3e-45
2rfa_A	232	Transient receptor potential cation channel subfa	2e-36
2rfa_A	232	Transient receptor potential cation channel subfa	3e-32
2rfa_A	232	Transient receptor potential cation channel subfa	2e-30
2rfa_A	232	Transient receptor potential cation channel subfa	6e-25
2rfa_A	232	Transient receptor potential cation channel subfa	6e-24
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	3e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-44
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-43
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-39
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-44
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-43
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-29
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-43
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-43
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-41
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-41
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-35
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-35
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-34
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-34
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-27
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-40
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-35
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-30
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-28
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-38
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-36
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-34
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-34
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-27
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-36
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-35
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-35
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-34
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-37
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-37
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-36
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-29
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-37
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-29
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-29
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-37
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-16
2pnn_A	273	Transient receptor potential cation channel subfa	2e-34
2pnn_A	273	Transient receptor potential cation channel subfa	6e-34
2pnn_A	273	Transient receptor potential cation channel subfa	1e-31
2pnn_A	273	Transient receptor potential cation channel subfa	7e-29
2pnn_A	273	Transient receptor potential cation channel subfa	4e-22
2pnn_A	273	Transient receptor potential cation channel subfa	3e-18
2pnn_A	273	Transient receptor potential cation channel subfa	6e-13
2pnn_A	273	Transient receptor potential cation channel subfa	6e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-33
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-30
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-33
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-29
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-28
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-33
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-32
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	3e-31
2etb_A	256	Transient receptor potential cation channel subfam	1e-29
2etb_A	256	Transient receptor potential cation channel subfam	3e-20
2etb_A	256	Transient receptor potential cation channel subfam	4e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-26
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-26
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-30
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-25
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-24
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-26
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-19
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-19
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-18
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-16
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  314 bits (806), Expect = e-102
 Identities = 161/526 (30%), Positives = 245/526 (46%), Gaps = 122/526 (23%)

Query: 28  VDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVW 87
           +       +GL  LH+AS  GHL +V  LL RGA+ + +  K  T LH+A+         
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA--------- 55

Query: 88  LGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAV 143
                            + GH +V   LL+N    + + KD  TPL  A + GH  +V +
Sbjct: 56  -----------------RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98

Query: 144 LLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYL 199
           LLEN    +         LHIAA++   +    LLE                        
Sbjct: 99  LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA--------------------- 137

Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
                +    +K GFTPLH+A+ YG   VA +LL++ A  N + K+GLTPLHVA     +
Sbjct: 138 -----SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192

Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           +IV  LL    +P  P   G TPLH+AA+ NQ ++ R LL+ G   +A + +G T L +A
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252

Query: 320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD- 378
                                   +EGH                    +   L+  + + 
Sbjct: 253 -----------------------AQEGHAE------------------MVALLLSKQANG 271

Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLL 424
              +K+GLTPLHL AQE  V VA++L+K+   VD  T+              + +   LL
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331

Query: 425 EYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYIS 484
           ++ A  NA++  G++PLH +A +GH D+  +LL++GA  +  + +G T L+IA++LGYIS
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391

Query: 485 VEESLKGVTE--TLIIAKGDGEKHKVVAPEIMQETFMSDSEDENGE 528
           V + LK VT+  + ++     +KH++  PE + E  +  SEDE  E
Sbjct: 392 VTDVLKVVTDETSFVLVS---DKHRMSFPETVDE-ILDVSEDEGEE 433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  266 bits (682), Expect = 6e-84
 Identities = 118/455 (25%), Positives = 185/455 (40%), Gaps = 85/455 (18%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           +  T    AARAGH + + ++L +N   +N    +    LH A++ GH ++V  LL   A
Sbjct: 46  KVETPLHMAARAGHTE-VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
           N + AT  G+T LHIA+                          ++GH + V  LLE    
Sbjct: 105 NPNLATTAGHTPLHIAA--------------------------REGHVETVLALLEKEAS 138

Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
                K GFTPL VA + G  +V  +LLE     +  GK  L  LH+A   ++    KLL
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
           L                              +P   + +G+TPLHIA+      VA  LL
Sbjct: 199 LPRGG--------------------------SPHSPAWNGYTPLHIAAKQNQVEVARSLL 232

Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD 293
                 N  +  G+TPLH+A+  G   +V  LL   AN ++    G TPLHL A+     
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292

Query: 294 IIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTAL 350
           +  +L+++G  VDA  R G+T L +A   G I + + L    A     +  + + G++ L
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVNAKTKLGYSPL 348

Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNA 409
             A + G+         +   L+       E   +G TPL +  +   + V ++L     
Sbjct: 349 HQAAQQGH-------TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401

Query: 410 QVDTPTKMD--------IATTLLEYGAKPNAESVA 436
           +       D            +L+       E ++
Sbjct: 402 ETSFVLVSDKHRMSFPETVDEILDVSEDEGEELIS 436

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  104 bits (261), Expect = 4e-24
 Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 34/193 (17%)

Query: 301 NGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLG 357
            G         G T L +A  +G++ + ++L   GA           +  T L +A + G
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA----SPNVSNVKVETPLHMAARAG 58

Query: 358 YISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK 416
           +         V + L+  K     K K+  TPLH  A+     + +L             
Sbjct: 59  H-------TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL------------- 98

Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSI 476
                 LLE  A PN  + AG TPLH++A EGH +    LLE  A  +   K+G T L +
Sbjct: 99  ------LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 152

Query: 477 AQKLGYISVEESL 489
           A K G + V E L
Sbjct: 153 AAKYGKVRVAELL 165

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  254 bits (652), Expect = 2e-80
 Identities = 64/464 (13%), Positives = 120/464 (25%), Gaps = 121/464 (26%)

Query: 27  NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPV 86
            ++   ++   +  +H+A++ G    V  L+  G +     + G TALH+A         
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC-------- 61

Query: 87  WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKDGFTPLAVAMQQGHDKVVAVL 144
                             + G       L           G  P+ +A+      +V  L
Sbjct: 62  ------------------KFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVAL 103

Query: 145 LEN-DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNE 203
           +E    RG++      +  +                                      NE
Sbjct: 104 VEGAKERGQM---PESLLNEC--------------------------------DEREVNE 128

Query: 204 HNPDVTSKSGFTPLHIASHYGNEG--VANILLDKRADVNFSAKSGLTPLHVASFMGCMNI 261
               V    G T LH     G E   +  IL+   A      K+  TPL  A        
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREA 188

Query: 262 VIYLL-----QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
           +  ++     ++    D    +G + LH A   N  D+    +  G  V+    E    L
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL 248

Query: 317 SIAQKLGYISVEESL--GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLII 374
            ++ +   + + + L                G T L                        
Sbjct: 249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL------------------------ 284

Query: 375 AKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES 434
                      L  +   A   +  V +LL +                      +     
Sbjct: 285 -----PDRVVWLDFVPAAADPSKQEVLQLLQEK-------------------LDEVVRSL 320

Query: 435 VAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
             G         +    +  M L   A V   ++    + ++++
Sbjct: 321 NTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  202 bits (517), Expect = 2e-60
 Identities = 56/378 (14%), Positives = 115/378 (30%), Gaps = 64/378 (16%)

Query: 123 KDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSC 178
            +    + VA ++G    V  L+E       + +    ALH+A K      AK L     
Sbjct: 18  DENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS--- 74

Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
                                         +   G  P+H+A       +   L++   +
Sbjct: 75  -------------------------VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE 109

Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ--TDIIR 296
                  G  P  + +      +       +    +   +G+T LH          ++I+
Sbjct: 110 R------GQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIK 157

Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESL----GAAERSQLKKRGREGHTALSI 352
           IL++ GA   A+ +   T L  A +       + +     +    +L    ++G++ L  
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

Query: 353 AQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQV 411
           A  + +       + V    +    D   +      PL+L  +   V + + LL+     
Sbjct: 218 AILINW-------EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270

Query: 412 DTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471
                  I       G     + V     +  +A     ++  +L E   +V  +   G 
Sbjct: 271 L------IQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA 324

Query: 472 TALSIAQKLGYISVEESL 489
                 +K    +V+   
Sbjct: 325 GGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  167 bits (426), Expect = 2e-47
 Identities = 48/284 (16%), Positives = 95/284 (33%), Gaps = 42/284 (14%)

Query: 227 GVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
           G  ++    + +   S    +  +HVA+  G  + V  L++   +P I    G T LHLA
Sbjct: 1   GPGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60

Query: 287 ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREG 346
            +    D  + L   G         G   + +A       +  +L       ++     G
Sbjct: 61  CKFGCVDTAKYLASVGE--VHSLWHGQKPIHLAVMANKTDLVVAL-------VEGAKERG 111

Query: 347 HTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQE--DRVGVAELL 404
               S+  +     V E    V            KH  G T LH C     + + + ++L
Sbjct: 112 QMPESLLNECDEREVNEIGSHV------------KHCKGQTALHWCVGLGPEYLEMIKIL 159

Query: 405 LKNNAQVDTPTK--------------MDIATTLLEYG-----AKPNAESVAGFTPLHLSA 445
           ++  A      K               +    +++        + +  +  G + LH + 
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI 219

Query: 446 SEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
                D++   +E G DV+    E    L ++ +   + + + L
Sbjct: 220 LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  243 bits (624), Expect = 2e-76
 Identities = 82/338 (24%), Positives = 128/338 (37%), Gaps = 63/338 (18%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
                L AAR+G+ +K++  L   NV+ + ++      LHLA+    + +V  LL  GA+
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83

Query: 63  VDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQGH 108
           V +  K G   LH A         E L+       K G          FTPL  A  +  
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLL-------KHGACVNAMDLWQFTPLHEAASKNR 136

Query: 109 DKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKK 164
            +V ++LL +          G + + +A      + +    +  +        L  A + 
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS-------LLQAAREA 189

Query: 165 DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIAS--- 221
           D  K  K L                             E       +S  T LH A    
Sbjct: 190 DLAKVKKTLA---------------------------LEIINFKQPQSHETALHCAVASL 222

Query: 222 HYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET 281
           H   + VA +LL K A+VN   K  +TPLHVA+     +++  L ++ A  +     G+T
Sbjct: 223 HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT 282

Query: 282 PLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            LH AA A      R+LL  G+     + +G TA  + 
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  210 bits (536), Expect = 2e-63
 Identities = 87/374 (23%), Positives = 136/374 (36%), Gaps = 72/374 (19%)

Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVD 181
           G+ G + L +A           +L  + +       L  A   ++ K             
Sbjct: 1   GEFGKSALDLADPSAK-----AVLTGEYKKD---ELLEAARSGNEEKLMA---------- 42

Query: 182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNF 241
                            L     N   +     TPLH+A+ Y    +  +LL   ADV+ 
Sbjct: 43  ----------------LLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86

Query: 242 SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN 301
             K GL PLH A   G   +   LL++ A  +   +   TPLH AA  N+ ++  +LL +
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146

Query: 302 GAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
           GA        G +A+ +A                         +GH+ L  A++     V
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYE------------FKGHSLLQAAREADLAKV 194

Query: 362 EESLKGVTETLIIAKGDGEKH-KNGLTPLHLCAQE---DRVGVAELLLKNNAQVDTPTK- 416
           ++         +  +    K  ++  T LH         R  VAELLL+  A V+   K 
Sbjct: 195 KK--------TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246

Query: 417 -------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV 463
                         D+   L ++GAK NA    G T LH +A  GH     +LL +G+D 
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306

Query: 464 SHAAKEGHTALSIA 477
           S  + +G TA  + 
Sbjct: 307 SIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  192 bits (490), Expect = 1e-56
 Identities = 83/448 (18%), Positives = 142/448 (31%), Gaps = 127/448 (28%)

Query: 55  ELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAV 114
           +L    A      +     L  A                         A     +K++A+
Sbjct: 9   DLADPSAKAVLTGEYKKDELLEA-------------------------ARSGNEEKLMAL 43

Query: 115 LLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
           L               TPL                             H+AA  +  +  
Sbjct: 44  LTPLNVNCHASDGRKSTPL-----------------------------HLAAGYNRVRIV 74

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
           +LLL+                             +     K G  PLH A  YG+  V  
Sbjct: 75  QLLLQHGA--------------------------DVHAKDKGGLVPLHNACSYGHYEVTE 108

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +LL   A VN       TPLH A+    + +   LL + A+P +    G++ + +A    
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE--SLGAAERSQLKKRGREGHT 348
             + +               +GH+ L  A++     V++  +L         K+ +   T
Sbjct: 169 LRERLTYEF-----------KGHSLLQAAREADLAKVKKTLALEIIN----FKQPQSHET 213

Query: 349 ALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKN 407
           AL  A    +   ++    V E L+    +  EK+K+ +TPLH+ A+     V E+L K+
Sbjct: 214 ALHCAVASLHPKRKQ----VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269

Query: 408 NAQVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
            A+++                  +     LL YG+ P+  S+ GFT   +       +  
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEAV 324

Query: 454 AMLLEHGADVSHAAKEGHTALSIAQKLG 481
             +L     +     +    L  A K G
Sbjct: 325 QQILSESTPMR--TSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  166 bits (422), Expect = 6e-47
 Identities = 58/300 (19%), Positives = 100/300 (33%), Gaps = 51/300 (17%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
            G      A   GH + + E L K+   +N  +      LH A+    + V + LLS GA
Sbjct: 90  GGLVPLHNACSYGHYE-VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE---- 117
           +       G +A+ +A   E    +         G + L  A ++     V   L     
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEF----KGHSLLQAA-READLAKVKKTLALEII 203

Query: 118 NDTRGKDGFTPLAVAMQQGHDK---VVAVLLEN----DTRGKVRLPALHIAAKKDDTKAA 170
           N  + +   T L  A+   H K   V  +LL      + + K  +  LH+AA++      
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM 263

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
           ++L                           K+    +     G T LH A+  G+     
Sbjct: 264 EVL--------------------------HKHGAKMNALDSLGQTALHRAALAGHLQTCR 297

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
           +LL   +D +  +  G T   + +       V  +L             +  L  A++A 
Sbjct: 298 LLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD--VDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  108 bits (272), Expect = 4e-26
 Identities = 51/265 (19%), Positives = 77/265 (29%), Gaps = 75/265 (28%)

Query: 243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA-NQTDIIRILLRN 301
            + G + L              L    A   +     +  L  AAR+ N+  ++ +L   
Sbjct: 1   GEFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL 47

Query: 302 GAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
                A      T L +A                                          
Sbjct: 48  NVNCHASDGRKSTPLHLAAGYNR------------------------------------- 70

Query: 362 EESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA 420
                 + + L+    D   K K GL PLH         V ELLLK+             
Sbjct: 71  ----VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH------------- 113

Query: 421 TTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKL 480
                 GA  NA  +  FTPLH +AS+   ++ ++LL HGAD +     G +A+ +A   
Sbjct: 114 ------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167

Query: 481 GYISVEESLKGVTETLIIAKGDGEK 505
                          L  A+     
Sbjct: 168 ELRERLTYEFKGHSLLQAAREADLA 192

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  106 bits (267), Expect = 2e-25
 Identities = 44/232 (18%), Positives = 70/232 (30%), Gaps = 70/232 (30%)

Query: 5   HTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLH---VVTELLSRGA 61
             S L+AAR   L K+ + L   +       +   ALH A    H     V   LL +GA
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA 238

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
           NV+   K   T LH+A+                          ++ H+ V+ VL ++   
Sbjct: 239 NVNEKNKDFMTPLHVAA--------------------------ERAHNDVMEVLHKHGAK 272

Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
            +     G T L  A   GH +   +LL               A  +  +     A + +
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQI 327

Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGN 225
           L                              +  + +      L  AS  G+
Sbjct: 328 LS----------------------------ESTPMRTSDVDYRLLEASKAGD 351

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  200 bits (510), Expect = 1e-60
 Identities = 64/310 (20%), Positives = 98/310 (31%), Gaps = 42/310 (13%)

Query: 30  INTANANGLNALHLASKDGHLHVVTELLSRGAN---VDSATKKGNTALHIASLGEFLVPV 86
                 +G  ALHLA    H   +  LL   A    +D     G TALH+A+        
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA-------- 53

Query: 87  WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVA 142
                               G    V  L           + G T L +A +        
Sbjct: 54  ------------------ILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCAC 95

Query: 143 VLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKN 202
           VLL+            ++   +D T              PA+V S               
Sbjct: 96  VLLQPRPSHPRDASDTYLTQSQDCTPDTSHA--------PAAVDSQPNPENEEEPRDEDW 147

Query: 203 EHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK-SGLTPLHVASFMGCMNI 261
               +  +  G TPLH+A  + +  +  +L D  AD+N      G TPLH+A      ++
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207

Query: 262 VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
           +  LL+  A+P      G TPL  A       + R+L  +GA       +  +  S +  
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS 267

Query: 322 LGYISVEESL 331
                  +  
Sbjct: 268 DSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  181 bits (461), Expect = 2e-53
 Identities = 56/302 (18%), Positives = 96/302 (31%), Gaps = 47/302 (15%)

Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYL 265
            ++ G T LH+A  + +E   + LL   A    ++     G T LH+A+ +G  + V  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
               A   +    G T LHLA R        +LL+        A + +   S        
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD------ 118

Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKN 384
                                H   ++       S               +     ++ +
Sbjct: 119 ---------------CTPDTSHAPAAVD------SQPNPENEEEPRDEDWRLQLEAENYD 157

Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK---------------MDIATTLLEYGAK 429
           G TPLH+        +  LL    A ++ P                   +   LL+ GA 
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYI-SVEES 488
           P A    G TPL  +    +  ++ +L  HGA       +  +  S +       + +E 
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277

Query: 489 LK 490
            +
Sbjct: 278 DE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  171 bits (437), Expect = 8e-50
 Identities = 60/325 (18%), Positives = 91/325 (28%), Gaps = 82/325 (25%)

Query: 3   EGHTSFLRAARAGHLDKI---IEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSR 59
           +G T+   A    H   +   +     +  ++  N  G  ALHLA+  G    V +L + 
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 60  GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN- 118
           GA V  A + G+TALH+A                           +        VLL+  
Sbjct: 68  GAGVLVAERGGHTALHLAC--------------------------RVRAHTCACVLLQPR 101

Query: 119 ----------------DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-----DTRGKVRLPA 157
                           D        P AV  Q   +       E+     +         
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

Query: 158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK---SGF 214
           LH+A    D +  +LL +                               D+       G 
Sbjct: 162 LHVAVIHKDAEMVRLLRD----------------------------AGADLNKPEPTCGR 193

Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           TPLH+A       V  +LL   AD       G TPL  A       +   L  + A    
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

Query: 275 PTVRGETPLHLAARANQTDIIRILL 299
                 +P   +   + +D      
Sbjct: 254 DGGDKLSPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  148 bits (377), Expect = 3e-41
 Identities = 52/278 (18%), Positives = 76/278 (27%), Gaps = 51/278 (18%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
            G T+   AA  G     +E L      +  A   G  ALHLA +         LL    
Sbjct: 44  LGQTALHLAAILGEAS-TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP 102

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
           +                           D        P AV  Q   +       E+   
Sbjct: 103 SHPRDASDTYLTQSQ-------------DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKKDDTKAAK 171
             +    DG TPL VA+     ++V +L +     N          LH+A +       +
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209

Query: 172 LLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI 231
           LLL+                  A          +P      G TPL  A    N  +A +
Sbjct: 210 LLLK----------------AGA----------DPTARMYGGRTPLGSALLRPNPILARL 243

Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
           L    A         L+P   +      +      + D
Sbjct: 244 LRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.6 bits (192), Expect = 5e-16
 Identities = 23/144 (15%), Positives = 38/144 (26%), Gaps = 25/144 (17%)

Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNA---QVDTPTK--------------MDIAT 421
           G   ++G T LHL          + LL  +A    +D                       
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLG 481
            L   GA        G T LHL+        + +LL+        A + +   S      
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT-- 120

Query: 482 YISVEESLKGVTETLIIAKGDGEK 505
                          + ++ + E 
Sbjct: 121 ------PDTSHAPAAVDSQPNPEN 138

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  200 bits (510), Expect = 3e-60
 Identities = 65/310 (20%), Positives = 115/310 (37%), Gaps = 58/310 (18%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           +    FL A  +G  ++++  L+   DIN AN +GL ALH A  D ++ +V  L+  GAN
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
           ++    +G   LH A+                            G+  +   L+      
Sbjct: 99  INQPDNEGWIPLHAAA--------------------------SCGYLDIAEYLISQGAHV 132

Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSC 178
                +G TPL +A ++  ++++   +    R  V + A     ++   + A+       
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVN---RQGVDIEAARKEEERIMLRDARQ------ 183

Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
                              +L     N    +KSG T LH+A+  G   V  +L+  R D
Sbjct: 184 -------------------WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224

Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
           VN     G TPLH A+  G       L++N  + +     G+T   +A       +  + 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

Query: 299 LRNGAQVDAR 308
            +       +
Sbjct: 285 KKQNLLHSEK 294

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  179 bits (456), Expect = 2e-52
 Identities = 71/292 (24%), Positives = 117/292 (40%), Gaps = 37/292 (12%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
             +       V    G      A   G+      LL++ AD+N++   GLT LH A    
Sbjct: 26  PPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD 84

Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALS 317
            +++V +L++N AN + P   G  PLH AA     DI   L+  GA V A   EG T L 
Sbjct: 85  NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

Query: 318 IAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG 377
           IA++     + ++        + ++G +   A    +++      + L         +  
Sbjct: 145 IAEEEAMEELLQNE-------VNRQGVDIEAARKEEERIMLRDARQWL--------NSGH 189

Query: 378 --DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV 435
             D    K+G T LH+ A +    V +LL++                        N +  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-------------------RYDVNIKDY 230

Query: 436 AGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEE 487
            G+TPLH +A  G  +   +L+E+  D+    K G TA  +A +     +EE
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  160 bits (407), Expect = 2e-45
 Identities = 60/382 (15%), Positives = 114/382 (29%), Gaps = 98/382 (25%)

Query: 95  DGFTPLAVAMQQGHDKVVAVLLEN--DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGK 152
                  +    G +  +   +     T+ K                      ++     
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF---------------------DDGA--- 42

Query: 153 VRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKS 212
                   A    DT+                              L++   + +  +  
Sbjct: 43  ----VFLAACSSGDTEEVL--------------------------RLLERGADINYANVD 72

Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
           G T LH A    N  +   L++  A++N     G  PLH A+  G ++I  YL+   A+ 
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 273 DIPTVRGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESL 331
                 G+TPL +A      ++++  + R G        +   A    +++      + L
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV-------DIEAARKEEERIMLRDARQWL 185

Query: 332 ---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLT 387
                       +  + G TAL +A   GY         V + LI A+ D   K  +G T
Sbjct: 186 NSGHI----NDVRHAKSGGTALHVAAAKGY-------TEVLKLLIQARYDVNIKDYDGWT 234

Query: 388 PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE 447
           PLH  A   +     +L++N                        A +  G T   ++  +
Sbjct: 235 PLHAAAHWGKEEACRILVEN-------------------LCDMEAVNKVGQTAFDVADED 275

Query: 448 GHADMSAMLLEHGADVSHAAKE 469
               +  +  +     S   ++
Sbjct: 276 ILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  144 bits (366), Expect = 2e-39
 Identities = 49/271 (18%), Positives = 94/271 (34%), Gaps = 31/271 (11%)

Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
           +  +         +  ++G    +   +       +    G      A  +  T+ +  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQK 355
           L  GA ++    +G TAL  A     + + + L   GA     + +   EG   L  A  
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA----NINQPDNEGWIPLHAAAS 115

Query: 356 LGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLL-KNNAQVDT 413
            GY         + E LI      G  +  G TPL +  +E    + +  + +    ++ 
Sbjct: 116 CGY-------LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168

Query: 414 PTKM-------DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA 466
             K        D    L          + +G T LH++A++G+ ++  +L++   DV+  
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228

Query: 467 AKEGHTALSIAQKLGYISVEESLKGVTETLI 497
             +G T L  A   G        +     L+
Sbjct: 229 DYDGWTPLHAAAHWGK-------EEACRILV 252

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           G T    AA  G  +     L +N  D+   N  G  A  +A +D   ++      +   
Sbjct: 232 GWTPLHAAAHWGKEE-ACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

Query: 63  VDSATKKGN 71
                +K +
Sbjct: 291 HSEKREKKS 299

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  197 bits (504), Expect = 2e-58
 Identities = 65/471 (13%), Positives = 120/471 (25%), Gaps = 146/471 (30%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
              S L A+  G++             N      L        +G+  +     +     
Sbjct: 37  SQHSLLEASYDGYIK---------RQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIP 87

Query: 64  DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE---NDT 120
                +    LH  +                            G   +   +     N  
Sbjct: 88  TEPEPESPIKLHTEA---------------------------AGSYAITEPITRESVNII 120

Query: 121 RGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTV 180
             +   T                              LH  A     + ++ L+      
Sbjct: 121 DPRHNRTV-----------------------------LHWIASNSSAEKSEDLIVHEAK- 150

Query: 181 DPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN 240
                              I    + +       TPL +A       +   L+   AD  
Sbjct: 151 -----------------ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT 193

Query: 241 FSAKSGLTPLHVASFMGCMNIVIYLLQND---ANPDIPTVRGETPLHLAARANQTDIIRI 297
              KS  + LH A+      +++Y+L +     + +     G T L + A     D +  
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

Query: 298 ---LLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ 354
              L+  GA+VD        +                             +G TAL  A 
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKY--------------------------KGRTALHYAA 287

Query: 355 KLGYISVEESLKGVTETLIIAKGD--GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD 412
           ++           + + L+  KG    ++ ++G TP+ L AQE R+ V   L++      
Sbjct: 288 QVSN-------MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ----- 335

Query: 413 TPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV 463
                         GA   A      T   L+ +  H ++  +      + 
Sbjct: 336 --------------GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  188 bits (480), Expect = 4e-55
 Identities = 60/335 (17%), Positives = 110/335 (32%), Gaps = 52/335 (15%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNN-VDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
                  +    G+   + +    N              LH  +  G   +   +     
Sbjct: 60  YSLYPNPQGYGNGNDF-LGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESV 117

Query: 62  NVDSATKKGNTALHIASLG------EFLVPVWLGDF---------KQGDGFTPLAVAMQQ 106
           N+    +   T LH  +        E L+     +             D  TPL +A+  
Sbjct: 118 NII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA 176

Query: 107 GHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG-------KVRL 155
              ++VA L++         K   + L  A       ++  +L +           +  +
Sbjct: 177 RRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236

Query: 156 PALHIAAK---KDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKS 212
            AL I A    +D   +AKLL+E    VD                         D     
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVD------------------YDGAARKDSEKYK 278

Query: 213 GFTPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           G T LH A+   N  +   L+ ++ ++ +   + G TP+ +A+  G + +V+YL+Q  A+
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
            +       T   LA   N  +I+ I  R   + +
Sbjct: 339 VEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  184 bits (469), Expect = 1e-53
 Identities = 70/414 (16%), Positives = 122/414 (29%), Gaps = 103/414 (24%)

Query: 95  DGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLL-------EN 147
                L  A   G+ K     L++         P       G+D +            E 
Sbjct: 36  SSQHSLLEASYDGYIKRQRNELQHY-----SLYPNPQGYGNGNDFLGDFNHTNLQIPTEP 90

Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
           +    +    LH  A        + +                               + +
Sbjct: 91  EPESPI---KLHTEAA-GSYAITEPITR----------------------------ESVN 118

Query: 208 V-TSKSGFTPLHIASHYGNEGVANILL--------DKRADVNFSAKSGLTPLHVASFMGC 258
           +   +   T LH  +   +   +  L+           ADVN       TPL +A     
Sbjct: 119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178

Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN---GAQVDARAREGHTA 315
             +V YL++  A+P I      + LH AA      ++  +L +      ++   R G TA
Sbjct: 179 RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238

Query: 316 LSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIA 375
           L I                               ++ A+ L  +      KG       A
Sbjct: 239 LMIVAHNEG----------------------RDQVASAKLL--VE-----KGAKVDYDGA 269

Query: 376 KGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV 435
                +   G T LH  AQ   + + + L+                     G+  + +  
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK------------------GSNKDKQDE 311

Query: 436 AGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
            G TP+ L+A EG  ++   L++ GA V       HTA  +AQ   + ++ +  
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  123 bits (311), Expect = 3e-31
 Identities = 48/300 (16%), Positives = 69/300 (23%), Gaps = 69/300 (23%)

Query: 201 KNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMN 260
           +       +  S    L  AS+ G        L             L P       G   
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQH---------YSLYPNPQGYGNGNDF 75

Query: 261 IVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
           +  +   N   P  P       LH  A A    I   + R    +    R   T L    
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID-PRHNRTVLHWIA 133

Query: 321 KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE 380
                   E L   E  +    G                 V                   
Sbjct: 134 SNSSAEKSEDLIVHEAKECIAAG---------------ADVNA----------------- 161

Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
              +  TPL L     R  +   L+K                    GA P   + +  + 
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKA-------------------GADPTIYNKSERSA 202

Query: 441 LHLSASEGHADMSAMLLEH---GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
           LH +A+     M   +L       D+    + G TAL I                 + L+
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA----SAKLLV 258

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 20/156 (12%), Positives = 32/156 (20%), Gaps = 36/156 (23%)

Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
              +L  A   GYI  + +               E     L P           + +   
Sbjct: 37  SQHSLLEASYDGYIKRQRN---------------ELQHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
            N                      P          LH   + G   ++  +     ++  
Sbjct: 82  TN-------------------LQIPTEPEPESPIKLHT-EAAGSYAITEPITRESVNII- 120

Query: 466 AAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKG 501
             +   T L            E L        IA G
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  192 bits (490), Expect = 4e-58
 Identities = 63/309 (20%), Positives = 114/309 (36%), Gaps = 84/309 (27%)

Query: 27  NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPV 86
           +++    + N  + LH A++ GH+ +   L+  GAN+D+ ++   T L  A+        
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA-------- 52

Query: 87  WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVA 142
                             +  H + V  L++     D +  +G T L             
Sbjct: 53  ------------------ENNHLEAVKYLIKAGALVDPKDAEGSTCL------------- 81

Query: 143 VLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKN 202
                           H+AAKK   +  + LL                            
Sbjct: 82  ----------------HLAAKKGHYEVVQYLLS-------------------------NG 100

Query: 203 EHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIV 262
           + + +     G+TP+  A+ Y +  +  +LL K +D+N         LH A+F GC++I 
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160

Query: 263 IYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKL 322
             LL    +     + G++PLH+AAR N+ D + + L   + V  + +EG T L  A   
Sbjct: 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220

Query: 323 GYISVEESL 331
             +     +
Sbjct: 221 SQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  170 bits (434), Expect = 6e-50
 Identities = 60/287 (20%), Positives = 104/287 (36%), Gaps = 62/287 (21%)

Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
           N  +  ++  +PLH A+  G+  + ++L+   A+++  ++   TPL  A+    +  V Y
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ-VDARAREGHTALSIAQKLG 323
           L++  A  D     G T LHLAA+    ++++ LL NG   V+ +   G T +  A    
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA---- 118

Query: 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKH 382
                                  H                    + + L+    D   + 
Sbjct: 119 -------------------TEYKH------------------VDLVKLLLSKGSDINIRD 141

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
                 LH  A    V +AE+LL                         +A ++ G +PLH
Sbjct: 142 NEENICLHWAAFSGCVDIAEILL-------------------AAKCDLHAVNIHGDSPLH 182

Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           ++A E   D   + L   +DV+   KEG T L  A     +     +
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  161 bits (411), Expect = 1e-46
 Identities = 65/279 (23%), Positives = 105/279 (37%), Gaps = 63/279 (22%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
              +    AA AGH+D I   L +   +I+T + +    L  A+++ HL  V  L+  GA
Sbjct: 10  NKRSPLHAAAEAGHVD-ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
            VD    +G+T LH+A+                          ++GH +VV  LL N   
Sbjct: 69  LVDPKDAEGSTCLHLAA--------------------------KKGHYEVVQYLLSNGQM 102

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKL 172
             + +   G+TP+  A +  H  +V +LL      + R       LH AA       A++
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162

Query: 173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL 232
           LL   C                          +    +  G +PLHIA+         + 
Sbjct: 163 LLAAKC--------------------------DLHAVNIHGDSPLHIAARENRYDCVVLF 196

Query: 233 LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           L + +DV    K G TPL  AS    +   + + +   +
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  188 bits (481), Expect = 4e-56
 Identities = 58/316 (18%), Positives = 112/316 (35%), Gaps = 42/316 (13%)

Query: 160 IAAKKDDTKAAKLLLEVSCTVDPASVLSSTT------GNAATGGYLIKNEHNPDVTSKSG 213
           + +       +  L+     +                G     G  +   +     + S 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRL-LSNPLMGDAVSD 59

Query: 214 FTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
           ++P+H A+ +G++     L+ +   VN      ++PLH A   G ++ V  LL++ A  +
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119

Query: 274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL-- 331
             T    TPL  A  +   D + +LL++GA V     +  + +  A + G++    SL  
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIA 178

Query: 332 -GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLH 390
            G      +  +     T L +A +          +   + L+ +  D  + K   +PLH
Sbjct: 179 YGG----NIDHKISHLGTPLYLACENQQ-------RACVKKLLESGADVNQGKGQDSPLH 227

Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA 450
              +     +A L                   L+++GA   A++  G  P+ L   E   
Sbjct: 228 AVVRTASEELACL-------------------LMDFGADTQAKNAEGKRPVELVPPESPL 268

Query: 451 DMSAMLLEHGADVSHA 466
                L   GA +   
Sbjct: 269 AQ-LFLEREGASLPKP 283

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  186 bits (476), Expect = 2e-55
 Identities = 65/378 (17%), Positives = 107/378 (28%), Gaps = 99/378 (26%)

Query: 43  LASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAV 102
           + S   H H  + L+ RG+++ S   K                         DG  P   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGM---------------------DGSKPAGP 39

Query: 103 AMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPAL 158
               G   +   L+ +       ++P+  A   GH   +  L+      +      +  L
Sbjct: 40  RDFPGIRLLSNPLMGDA---VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPL 96

Query: 159 HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLH 218
           H A         K+LL+                               +  +    TPL 
Sbjct: 97  HEACLGGHLSCVKILLKHGA--------------------------QVNGVTADWHTPLF 130

Query: 219 IASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR 278
            A   G+    N+LL   A V        +P+H A+  G +  V  L+    N D     
Sbjct: 131 NACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH 189

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
             TPL+LA    Q   ++ LL +GA V+   +   + L                      
Sbjct: 190 LGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAV------------------- 229

Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
                R                     + +   L+    D   K+  G  P+ L   E  
Sbjct: 230 ----VRTAS------------------EELACLLMDFGADTQAKNAEGKRPVELVPPESP 267

Query: 398 VGVAELLLKNNAQVDTPT 415
           +     L +  A +  P 
Sbjct: 268 L-AQLFLEREGASLPKPK 284

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  181 bits (461), Expect = 3e-53
 Identities = 57/314 (18%), Positives = 96/314 (30%), Gaps = 74/314 (23%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
           G          G    ++ +      +     +  + +H A+  GH   +  L+S+G  V
Sbjct: 33  GSKPAGPRDFPGIR--LLSN-----PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85

Query: 64  DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----D 119
           +  T    + LH A                             GH   V +LL++    +
Sbjct: 86  NIITADHVSPLHEAC--------------------------LGGHLSCVKILLKHGAQVN 119

Query: 120 TRGKDGFTPLAVAMQQGHDKVVAVLLEN------DTRGKVRLPALHIAAKKDDTKAAKLL 173
               D  TPL  A   G    V +LL++      ++        +H AA++   +    L
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS---PIHEAARRGHVECVNSL 176

Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
           +                              N D       TPL++A           LL
Sbjct: 177 IAYGG--------------------------NIDHKISHLGTPLYLACENQQRACVKKLL 210

Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD 293
           +  ADVN   K   +PLH         +   L+   A+       G+ P+ L    +   
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA 269

Query: 294 IIRILLRNGAQVDA 307
            +  L R GA +  
Sbjct: 270 QL-FLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  159 bits (406), Expect = 3e-45
 Identities = 55/279 (19%), Positives = 91/279 (32%), Gaps = 46/279 (16%)

Query: 219 IASHYGNEGVANILLDKRADVN-----FSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
           + S + +   ++ L+ + + +           G  P     F G     I LL N    D
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG-----IRLLSNPLMGD 55

Query: 274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL-- 331
              V   +P+H AA       +R L+  G  V+    +  + L  A   G++S  + L  
Sbjct: 56  --AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113

Query: 332 -GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLH 390
            GA    Q+     + HT L  A   G              L+      +   +  +P+H
Sbjct: 114 HGA----QVNGVTADWHTPLFNACVSGS-------WDCVNLLLQHGASVQPESDLASPIH 162

Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA 450
             A+   V     L+                    YG   + +     TPL+L+      
Sbjct: 163 EAARRGHVECVNSLI-------------------AYGGNIDHKISHLGTPLYLACENQQR 203

Query: 451 DMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
                LLE GADV +  K   + L    +     +   L
Sbjct: 204 ACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
              T    A         ++ L ++  D+N       + LH   +     +   L+  GA
Sbjct: 189 HLGTPLYLACENQQRA-CVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGA 246

Query: 62  NVDSATKKGNTALHIAS 78
           +  +   +G   + +  
Sbjct: 247 DTQAKNAEGKRPVELVP 263

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  186 bits (476), Expect = 2e-55
 Identities = 48/333 (14%), Positives = 99/333 (29%), Gaps = 73/333 (21%)

Query: 9   LRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATK 68
           L         K ++   ++ D   A+ +G +A + A  D ++ +V  LL+ GA  +    
Sbjct: 4   LSRINTWK-SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN--LL 60

Query: 69  KGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKD 124
           +    LH A+                               K+V +LL +          
Sbjct: 61  ENEFPLHQAA--------------------------TLEDTKIVKILLFSGLDDSQFDDK 94

Query: 125 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLP-ALHIAAKKDDTKAAKLLLEVSCT 179
           G T L  A+  G+ + V + ++        GK     + + A   +D       L     
Sbjct: 95  GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS---- 150

Query: 180 VDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV 239
                                  E           + +HI    G+  +  +LLD     
Sbjct: 151 -----------------------EIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST 187

Query: 240 NFSAKSGLTP-LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
           N +      P + +A     + ++  L + D N         +        +  +I +++
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMI 240

Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           +    +  + +      +    KL  I  +   
Sbjct: 241 IEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKE 273

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  186 bits (474), Expect = 3e-55
 Identities = 38/306 (12%), Positives = 83/306 (27%), Gaps = 64/306 (20%)

Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
              +  +       G +  + A    N  +   LL+  A  N        PLH A+ +  
Sbjct: 17  SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN--LLENEFPLHQAATLED 74

Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
             IV  LL +  +      +G T L+ A  +     +++ ++   ++    + G      
Sbjct: 75  TKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG------ 128

Query: 319 AQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD 378
                                        T+   A  L           +    +     
Sbjct: 129 ---------------------------WKTSFYHAVMLND-------VSIVSYFLSEIPS 154

Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK---------------MDIATTL 423
                  L+ +H+  +   V +  LLL      +T                  +++   L
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYI 483
            +Y            +    +     A+++ M++E   +    +      +    KL  I
Sbjct: 215 FKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267

Query: 484 SVEESL 489
             +   
Sbjct: 268 ISKNKE 273

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  151 bits (383), Expect = 5e-42
 Identities = 48/322 (14%), Positives = 92/322 (28%), Gaps = 58/322 (18%)

Query: 96  GFTPLAVAMQQGHDKVVAVLLEN---DTRGKDGFTPLAVAMQQGHDKVVAVLLE-----N 147
           G     +       K +   L +         G +    A+   + ++V  LL      N
Sbjct: 1   GMDLSRIN--TWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN 58

Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
               +     LH AA  +DTK  K+LL                              +  
Sbjct: 59  LLENEF---PLHQAATLEDTKIVKILLFSGL--------------------------DDS 89

Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL-TPLHVASFMGCMNIVIYLL 266
                G T L+ A   GN     + + K   + F  K+G  T  + A  +  ++IV Y L
Sbjct: 90  QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149

Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHT-ALSIAQKLGYI 325
               +         + +H+  +    D++ +LL      +          + +A     I
Sbjct: 150 SEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI 208

Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKN 384
            + +         L K     ++A      L           + + +I    +       
Sbjct: 209 EMLQ--------ALFKYDINIYSANLENVLLDD-------AEIAKMIIEKHVEYKSDSYT 253

Query: 385 GLTPLHLCAQEDRVGVAELLLK 406
               +    + D +      L+
Sbjct: 254 KDLDIVKNNKLDEIISKNKELR 275

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  119 bits (301), Expect = 1e-30
 Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 42/250 (16%)

Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
           G+    + +     +  +    +  +     V G +  + A   N   ++  LL  GA  
Sbjct: 1   GMDLSRINT---WKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 306 DARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVE 362
           +    E    L  A  L    + + L   G        +   +G+TAL  A   G     
Sbjct: 58  N--LLENEFPLHQAATLEDTKIVKILLFSGL----DDSQFDDKGNTALYYAVDSGN---- 107

Query: 363 ESLKGVTETLIIAKGD-GEKHKNGL-TPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA 420
                  +  +          K G  T  +     + V +    L               
Sbjct: 108 ---MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP----------- 153

Query: 421 TTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHT-ALSIAQK 479
                       +     + +H++   GH DM  +LL++    +          + +A  
Sbjct: 154 ---------STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID 204

Query: 480 LGYISVEESL 489
              I + ++L
Sbjct: 205 NKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (256), Expect = 2e-24
 Identities = 25/258 (9%), Positives = 69/258 (26%), Gaps = 95/258 (36%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLN-ALHLASKDGHLHVVTELLSRG 60
           +G+T+   A  +G++   ++   K N  +      G   + + A     + +V+  LS  
Sbjct: 94  KGNTALYYAVDSGNMQ-TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152

Query: 61  ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
            +         + +HI                            + GH  ++ +LL+   
Sbjct: 153 PSTF-DLAILLSCIHITI--------------------------KNGHVDMMILLLDYMT 185

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
             +T     F                             P + +A    D +  + L   
Sbjct: 186 STNTNNSLLFI----------------------------PDIKLAIDNKDIEMLQALF-- 215

Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
                                     +++ ++      +         +  +A ++++K 
Sbjct: 216 --------------------------KYDINIY-----SANLENVLLDDAEIAKMIIEKH 244

Query: 237 ADVNFSAKSGLTPLHVAS 254
            +    + +    +   +
Sbjct: 245 VEYKSDSYTKDLDIVKNN 262

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  183 bits (468), Expect = 7e-55
 Identities = 63/290 (21%), Positives = 102/290 (35%), Gaps = 67/290 (23%)

Query: 30  INTANANGLNALHLASKDGHLHVVTELLSR----GANVDSATKKGNTALHIASLGEFLVP 85
              A+ +G   LH+A   G+L  V  L++     G  +D       T LH+A        
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV------- 54

Query: 86  VWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVV 141
                                    VV +L+          + G T   +A +      +
Sbjct: 55  -------------------ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCL 95

Query: 142 AVLLEN--------DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNA 193
             LL++        + R    L ALH+A   +  +  +LLLE    +D            
Sbjct: 96  RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID------------ 143

Query: 194 ATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
                   +        KSG +PL  A    +  +  +LL   A+VN    SG + LH A
Sbjct: 144 ------AVD-------IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

Query: 254 SFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           S  G + +V  L+++ A+  +     +TPL +A      DI+R      A
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  160 bits (408), Expect = 3e-46
 Identities = 61/289 (21%), Positives = 103/289 (35%), Gaps = 70/289 (24%)

Query: 211 KSGFTPLHIASHYGNEGVANILLDKR----ADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           + G TPLHIA   GN    + L++       +++       TPLH+A      ++V  L+
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66

Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ----VDARAREGHTALSIAQKL 322
              A+P      G+T  HLA        +R LL + A     ++AR  +G TAL +A   
Sbjct: 67  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA--- 123

Query: 323 GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEK- 381
                                                      +   + L+    D +  
Sbjct: 124 --------------------VNTEC------------------QETVQLLLERGADIDAV 145

Query: 382 -HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
             K+G +PL    + + + + +LLL++                   GA  NA+  +G + 
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQH-------------------GANVNAQMYSGSSA 186

Query: 441 LHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           LH ++  G   +   L+  GAD S       T L +A+    I +    
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  158 bits (401), Expect = 4e-45
 Identities = 57/287 (19%), Positives = 94/287 (32%), Gaps = 71/287 (24%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-----KNNVDINTANANGLNALHLASKDGHLHVVTELL 57
           +G T    A   G+L   +  L     +   +++  N      LHLA       VV  L+
Sbjct: 8   DGDTPLHIAVVQGNLP-AVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66

Query: 58  SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE 117
           + GA+  +  + G TA H+A                           +      +  LL+
Sbjct: 67  TAGASPMALDRHGQTAAHLAC--------------------------EHRSPTCLRALLD 100

Query: 118 N--------DTRGKDGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKK 164
           +        + R  DG T L VA+     + V +LLE     +    K     L  A + 
Sbjct: 101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160

Query: 165 DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYG 224
           +     +LL                          +++  N +    SG + LH AS  G
Sbjct: 161 NSLSMVQLL--------------------------LQHGANVNAQMYSGSSALHSASGRG 194

Query: 225 NEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
              +   L+   AD +       TPL VA     ++I+       A+
Sbjct: 195 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 71.7 bits (177), Expect = 2e-14
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
              ++G TPLH+   +  +     L+                   + G + +  +    T
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVN---------------LFQQGGRELDIYNNLRQT 48

Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           PLHL+       +  +L+  GA      + G TA  +A +    +   +L
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  177 bits (452), Expect = 1e-52
 Identities = 59/289 (20%), Positives = 93/289 (32%), Gaps = 63/289 (21%)

Query: 30  INTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLG 89
           +   +      +  A++ G      EL+  G +V    K+  T LH A+           
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAA----------- 50

Query: 90  DFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKD-GFTPLAVAMQQGHDKVVAVL 144
                                +V   +      D  G D   TPL  A +QGH  +V  L
Sbjct: 51  ---------------INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95

Query: 145 LEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLI 200
           ++               +H+AA+   T                              YLI
Sbjct: 96  MKYGADPSLIDGEGCSCIHLAAQFGHTSIVA--------------------------YLI 129

Query: 201 KNEHNPDVTSKSGFTPLHIASHYGNEG-VANILLDKRADVNFSAKS-GLTPLHVASFMGC 258
               + D+  ++G TPL  A++  +      +LL     VN   K    T LH A   G 
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189

Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
             ++  LL+  AN D   ++GE+ L LA +     +I  L         
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  167 bits (427), Expect = 7e-49
 Identities = 66/306 (21%), Positives = 101/306 (33%), Gaps = 73/306 (23%)

Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
           +           +  A+ YG       L++   DV    K  +T LH A+    +++V Y
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 265 LLQNDANPDIPTV-RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
            +   A  D        TPLH A R     ++  L++ GA       EG + + +A    
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA---- 116

Query: 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG---DGE 380
                               + GH   SI   L                 IAKG   D  
Sbjct: 117 -------------------AQFGH--TSIVAYL-----------------IAKGQDVD-M 137

Query: 381 KHKNGLTPLHLCAQE-DRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
             +NG+TPL   A     V    LLL  N  V+   K                      T
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYH------------------KNT 179

Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIA 499
            LH +   G+  + ++LLE GA+V     +G +AL +A++            +   L  A
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN-------VWMINHLQEA 232

Query: 500 KGDGEK 505
           +     
Sbjct: 233 RQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  154 bits (392), Expect = 7e-44
 Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 63/281 (22%)

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
           ++          +  A+                          Q G  +    L+E    
Sbjct: 1   HMTHIDDYSTWDIVKAT--------------------------QYGIYERCRELVEAGYD 34

Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKKDDTKAAKL 172
                K+  T L  A       +V   +      +   G +    LH A ++        
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV- 93

Query: 173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL 232
                                     L+K   +P +    G + +H+A+ +G+  +   L
Sbjct: 94  -------------------------QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128

Query: 233 LDKRADVNFSAKSGLTPLHVASFMG-CMNIVIYLLQNDANPDIPT-VRGETPLHLAARAN 290
           + K  DV+   ++G+TPL  A++    ++    LL  + + ++       T LH A  A 
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188

Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            T +I +LL  GA VDA+  +G +AL +A++   + +   L
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  146 bits (370), Expect = 9e-41
 Identities = 52/262 (19%), Positives = 87/262 (33%), Gaps = 42/262 (16%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            +  A +    +  + L+E                             +     K   T 
Sbjct: 12  DIVKATQYGIYERCRELVEAGY--------------------------DVRQPDKENVTL 45

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAK-SGLTPLHVASFMGCMNIVIYLLQNDANPDIP 275
           LH A+      +    + K A V+        TPLH A+  G +++V+ L++  A+P + 
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 276 TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA-QKLGYISVEESL--- 331
              G + +HLAA+   T I+  L+  G  VD   + G T L  A  +   +     L   
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLH 390
                S         +TAL  A   G          V   L+ A  +   ++  G + L 
Sbjct: 166 NV---SVNLGDKYHKNTALHWAVLAGN-------TTVISLLLEAGANVDAQNIKGESALD 215

Query: 391 LCAQEDRVGVAELLLKNNAQVD 412
           L  Q   V +   L +      
Sbjct: 216 LAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  134 bits (341), Expect = 1e-36
 Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 86/277 (31%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANAN-GLNALHLASKDGHLHVVTELLSRG 60
           E  T    AA    +D ++++       ++    +     LH A++ GHL +V +L+  G
Sbjct: 41  ENVTLLHWAAINNRID-LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99

Query: 61  ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
           A+      +G + +H+A+                          Q GH  +VA L+    
Sbjct: 100 ADPSLIDGEGCSCIHLAA--------------------------QFGHTSIVAYLIAKGQ 133

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
             D   ++G TPL  A  + H                                 +LLL  
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDP----------------------------TRLLLTF 165

Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
           + +V+                  + ++++         T LH A   GN  V ++LL+  
Sbjct: 166 NVSVN------------------LGDKYH-------KNTALHWAVLAGNTTVISLLLEAG 200

Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
           A+V+     G + L +A     + ++ +L +      
Sbjct: 201 ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  178 bits (453), Expect = 4e-52
 Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 57/314 (18%)

Query: 33  ANANGLNALHLASKDGHLHVVTELLSRGANVDSATKK-GNTALHIASLGEFLVPVWLGDF 91
           A     + L  A ++  + +V +LL  GANV+   ++ G T LH A              
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV------------- 47

Query: 92  KQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
                        Q   + +V +LL +      R K+G TP  +A   G  K++ + L  
Sbjct: 48  -------------QMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94

Query: 148 ----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNE 203
               +        A   AA     KA K L +    V+                   K +
Sbjct: 95  GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR----------------KTK 138

Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFMGCMN-- 260
            + +   K G T L  A+  G+  V  ILLD+  ADVN     G   L  A      +  
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 261 --IVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALS 317
             I   LL + A+ ++   RG+TPL LA       +++ LL +   +++    +G TAL 
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 318 IAQKLGYISVEESL 331
           +A +L    + E L
Sbjct: 259 LAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  175 bits (447), Expect = 3e-51
 Identities = 66/321 (20%), Positives = 113/321 (35%), Gaps = 63/321 (19%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKS---G 213
            L  A + +D    + LLE                               +V  +    G
Sbjct: 8   LLIKAVQNEDVDLVQQLLE----------------------------GGANVNFQEEEGG 39

Query: 214 FTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
           +TPLH A     E +  +LL   AD     K+G TP  +A+  G + ++   L   A+ +
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99

Query: 274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDAR----------AREGHTALSIAQKLG 323
                G T    AA   +   ++ L + GA V+ R           + G TAL  A + G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKH 382
           ++ V + L     + +      G  AL  A        +  ++ +T  L+    D   + 
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSD---DSDVEAITHLLLDHGADVNVRG 216

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
           + G TPL L  ++  +G+ + LL+                      + N     G T L 
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQ------------------EHIEINDTDSDGKTALL 258

Query: 443 LSASEGHADMSAMLLEHGADV 463
           L+       ++ +L + GA  
Sbjct: 259 LAVELKLKKIAELLCKRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  174 bits (445), Expect = 5e-51
 Identities = 69/331 (20%), Positives = 111/331 (33%), Gaps = 77/331 (23%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANAN-GLNALHLASKDGHLHVVTELLSRG 60
           E +   ++A +   +D +++ L +   ++N      G   LH A +     +V  LL  G
Sbjct: 4   EDNHLLIKAVQNEDVD-LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 61  ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
           A+     K G T   +A+                            G  K++ + L    
Sbjct: 63  ADPVLRKKNGATPFLLAA--------------------------IAGSVKLLKLFLSKGA 96

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLP----------ALHIAA 162
             +     GFT    A   G  K +  L +     + R K +            AL  AA
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

Query: 163 KKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH 222
           +K   +  K+LL                G A           + +     G   L  A  
Sbjct: 157 EKGHVEVLKILL-------------DEMG-A-----------DVNACDNMGRNALIHALL 191

Query: 223 YGNEG----VANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL-QNDANPDIPTV 277
             ++     + ++LLD  ADVN   + G TPL +A     + +V  LL Q     +    
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDAR 308
            G+T L LA       I  +L + GA  D  
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  159 bits (405), Expect = 3e-45
 Identities = 71/315 (22%), Positives = 112/315 (35%), Gaps = 62/315 (19%)

Query: 123 KDGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKKDDTKAAKLLLEVS 177
            +    L  A+Q     +V  LLE     N    +     LH A +       +      
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE------ 56

Query: 178 CTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
                                L+++  +P +  K+G TP  +A+  G+  +  + L K A
Sbjct: 57  --------------------LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96

Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI----------PTVRGETPLHLAA 287
           DVN     G T    A+  G +  + +L +  AN ++              G T L  AA
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

Query: 288 RANQTDIIRILLRN-GAQVDARAREGHTALSIAQKLGYISVEE-------SLGAAERSQL 339
                ++++ILL   GA V+A    G  AL  A      S  E         GA     +
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DV 212

Query: 340 KKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG--EKHKNGLTPLHLCAQEDR 397
             RG  G T L +A +  +        G+ + L+  +     +   +G T L L  +   
Sbjct: 213 NVRGERGKTPLILAVEKKH-------LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265

Query: 398 VGVAELLLKNNAQVD 412
             +AELL K  A  D
Sbjct: 266 KKIAELLCKRGASTD 280

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  153 bits (388), Expect = 1e-42
 Identities = 69/299 (23%), Positives = 105/299 (35%), Gaps = 64/299 (21%)

Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS-GLTPLHVASFMGCMNIVIYLLQN 268
           +      L  A    +  +   LL+  A+VNF  +  G TPLH A  M   +IV  LL++
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
            A+P +    G TP  LAA A    ++++ L  GA V+     G TA   A   G +   
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKG--VTETLIIAKGDGEKHKNGL 386
           + L                                  +G  V       +      K G 
Sbjct: 122 KFL---------------------------YK-----RGANVNLRRKTKEDQERLRKGGA 149

Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSAS 446
           T L   A++  V V ++LL                   E GA  NA    G   L  +  
Sbjct: 150 TALMDAAEKGHVEVLKILLD------------------EMGADVNACDNMGRNALIHALL 191

Query: 447 EGHADMSA----MLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKG 501
                       +LL+HGADV+   + G T L +A +  +        G+ + L+  + 
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-------LGLVQRLLEQEH 243

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  168 bits (429), Expect = 4e-49
 Identities = 67/282 (23%), Positives = 103/282 (36%), Gaps = 53/282 (18%)

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
           +V+     G T L IAS               G G        ++    V++  +     
Sbjct: 2   DVNVRGPDGFTPLMIAS-------------CSGGGLETGNSEEEEDAPAVISDFIYQGAS 48

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKA 169
             +   + G T L +A +         LLE        D  G+     LH A   D    
Sbjct: 49  LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT---PLHAAVSADAQGV 105

Query: 170 AKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA 229
            ++L+                 N AT         + D     G TPL +A+    EG+ 
Sbjct: 106 FQILIR----------------NRAT---------DLDARMHDGTTPLILAARLAVEGML 140

Query: 230 NILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA 289
             L++  ADVN     G + LH A+ +  ++  + LL+N AN D+   R ETPL LAAR 
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE 200

Query: 290 NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
              +  ++LL + A  D           IAQ+  +  +   L
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  168 bits (427), Expect = 9e-49
 Identities = 65/280 (23%), Positives = 106/280 (37%), Gaps = 49/280 (17%)

Query: 205 NPDVTSKSGFTPLHIASHYGNEG-------------VANILLDKRADV-NFSAKSGLTPL 250
           + +V    GFTPL IAS  G                V +  + + A + N + ++G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ-VDARA 309
           H+A+     +    LL+  A+ +I    G TPLH A  A+   + +IL+RN A  +DAR 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 310 REGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLK 366
            +G T L +A +L    + E L    A     +      G +AL  A  +          
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHA----DVNAVDDLGKSALHWAAAVNN-------V 170

Query: 367 GVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLE 425
                L+    +   ++    TPL L A+E     A++LL                   +
Sbjct: 171 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL-------------------D 211

Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
           + A  +        P  ++    H D+  +L        H
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH 251

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  148 bits (376), Expect = 2e-41
 Identities = 60/285 (21%), Positives = 93/285 (32%), Gaps = 70/285 (24%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHL-KNNVDI-NTANANGLNALHLASKDGHLHVVTELLSR 59
           G G  +            +I         + N  +  G  ALHLA++         LL  
Sbjct: 21  GGGLETGNSEEEEDAPA-VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 79

Query: 60  GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN- 118
            A+ +     G T LH A                                 V  +L+ N 
Sbjct: 80  SADANIQDNMGRTPLHAAV--------------------------SADAQGVFQILIRNR 113

Query: 119 ----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDT 167
               D R  DG TPL +A +   + ++  L+ +       D  GK    ALH AA  ++ 
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS---ALHWAAAVNNV 170

Query: 168 KAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEG 227
            AA +L                          +KN  N D+ +    TPL +A+  G+  
Sbjct: 171 DAAVVL--------------------------LKNGANKDMQNNREETPLFLAAREGSYE 204

Query: 228 VANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
            A +LLD  A+ + +      P  +A      +IV  L     + 
Sbjct: 205 TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  114 bits (289), Expect = 3e-29
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 63/247 (25%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA- 61
           G T+   AAR    D   + L + + D N  +  G   LH A       V   L+   A 
Sbjct: 57  GETALHLAARYSRSD-AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
           ++D+    G T L +A+                          +   + ++  L+ +   
Sbjct: 116 DLDARMHDGTTPLILAA--------------------------RLAVEGMLEDLINSHAD 149

Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
            +     G + L  A    +     VLL+N    D +       L +AA++   + AK+L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
           L+                + A          N D+T      P  IA    +  +  +L 
Sbjct: 210 LD----------------HFA----------NRDITDHMDRLPRDIAQERMHHDIVRLLD 243

Query: 234 DKRADVN 240
            +    +
Sbjct: 244 LEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.5 bits (192), Expect = 3e-16
 Identities = 44/166 (26%), Positives = 62/166 (37%), Gaps = 35/166 (21%)

Query: 341 KRGREGHTALSIA------QKLGYISVEESLKGVTETLII--AKGDGEKHKNGLTPLHLC 392
            RG +G T L IA       + G    EE    V    I   A    +  + G T LHL 
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 393 AQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM 452
           A+  R   A+ LL                   E  A  N +   G TPLH + S     +
Sbjct: 65  ARYSRSDAAKRLL-------------------EASADANIQDNMGRTPLHAAVSADAQGV 105

Query: 453 SAMLLEHGA-DVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
             +L+ + A D+     +G T L +A +L         +G+ E LI
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAV-------EGMLEDLI 144

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  102 bits (256), Expect = 6e-25
 Identities = 47/263 (17%), Positives = 80/263 (30%), Gaps = 68/263 (25%)

Query: 246 GLTPLHVASFMGCMNIVI-YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
             +PL +A+    +  +   L             GET LH+AA  +  +   +L+    +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 305 V-----DARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKL 356
           +      +   EG TAL IA     +++  +L   GA                       
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA----------------------- 99

Query: 357 GYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK 416
              SV     G     +           G  PL   A      +  LL+           
Sbjct: 100 ---SVSARATG----SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI----------- 141

Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSA----MLLEHGADVSHAA----- 467
                   E+GA   A+   G T LH+   + +   +     +LL +       +     
Sbjct: 142 --------EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP 193

Query: 468 -KEGHTALSIAQKLGYISVEESL 489
             +G T   +A   G I + + L
Sbjct: 194 NNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 99.6 bits (249), Expect = 6e-24
 Identities = 44/220 (20%), Positives = 71/220 (32%), Gaps = 45/220 (20%)

Query: 279 GETPLHLAARANQTDII-RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
            E+PL LAA+ N    + ++L   G +V  R   G TAL IA     +     L      
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL------ 56

Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR 397
                                +             ++ +    +   G T LH+      
Sbjct: 57  ---------------------ME-----AAPE---LVFEPMTSELYEGQTALHIAVINQN 87

Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
           V +   LL   A V              +  +P+     G  PL  +A  G  ++  +L+
Sbjct: 88  VNLVRALLARGASVSARATGS------VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
           EHGAD+      G+T L I         +     +   L+
Sbjct: 142 EHGADIRAQDSLGNTVLHILILQPN---KTFACQMYNLLL 178

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 32/147 (21%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDIN-------------TANANGLNALHLASKDG 48
           EG T+   A    +++ ++  L      ++                  G + L  A+  G
Sbjct: 74  EGQTALHIAVINQNVN-LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132

Query: 49  HLHVVTELLSRGANVDSATKKGNTALHIAS----------LGEFLV-------PVWLGDF 91
              +V  L+  GA++ +    GNT LHI            +   L+          L   
Sbjct: 133 SEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELV 192

Query: 92  KQGDGFTPLAVAMQQGHDKVVAVLLEN 118
               G TP  +A  +G+  +   L++ 
Sbjct: 193 PNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  156 bits (396), Expect = 2e-44
 Identities = 58/285 (20%), Positives = 93/285 (32%), Gaps = 62/285 (21%)

Query: 210 SKSGFTPLHIASHYGNEG----VANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
           ++ G + LH+A  +  +     V   +    A +NF      TPLH+A       I   L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
           L    +P++   RG TPLHLA        + +L ++       +                
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS---------------- 108

Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG---DGEKH 382
                        LK     GHT L +A   GY+ + E L        ++ G   + ++ 
Sbjct: 109 ------------ILKATNYNGHTCLHLASIHGYLGIVELL--------VSLGADVNAQEP 148

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
            NG T LHL        +  LLLK                    GA  N  +  G++P  
Sbjct: 149 CNGRTALHLAVDLQNPDLVSLLLKC-------------------GADVNRVTYQGYSPYQ 189

Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEE 487
           L+       +   L +   +      E     S   +  +    E
Sbjct: 190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  153 bits (390), Expect = 1e-43
 Identities = 57/303 (18%), Positives = 94/303 (31%), Gaps = 84/303 (27%)

Query: 36  NGLNALHLASKDGHLHVVTE----LLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDF 91
           +G + LHLA       +  E    +    A ++       T LH+A              
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV------------- 53

Query: 92  KQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
                             ++   LL      + R   G TPL +A +QG    V VL ++
Sbjct: 54  -------------ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100

Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
                                               +    +   A              
Sbjct: 101 C----------------------------------TTPHLHSILKATN------------ 114

Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK-SGLTPLHVASFMGCMNIVIYLL 266
               +G T LH+AS +G  G+  +L+   ADVN     +G T LH+A  +   ++V  LL
Sbjct: 115 ---YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171

Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYIS 326
           +  A+ +  T +G +P  L      T I + L +   +      E     S   +  +  
Sbjct: 172 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE 231

Query: 327 VEE 329
             E
Sbjct: 232 FTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  143 bits (362), Expect = 1e-39
 Identities = 51/296 (17%), Positives = 81/296 (27%), Gaps = 74/296 (25%)

Query: 3   EGHTSFLRAARAGHLDK---IIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLS 58
           +G +    A           +I  +  +   +N  N      LHLA       +   LL 
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 59  RGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
            G + +    +GNT LH+A                           +QG    V VL ++
Sbjct: 67  AGCDPELRDFRGNTPLHLAC--------------------------EQGCLASVGVLTQS 100

Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSC 178
                       +                +  G      LH+A+        +LL+ +  
Sbjct: 101 ---CTTPHLHSILKAT-------------NYNGH---TCLHLASIHGYLGIVELLVSLGA 141

Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
            V           NA                  +G T LH+A    N  + ++LL   AD
Sbjct: 142 DV-----------NAQEP--------------CNGRTALHLAVDLQNPDLVSLLLKCGAD 176

Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
           VN     G +P  +        I   L Q            E        +  T+ 
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  131 bits (331), Expect = 3e-35
 Identities = 50/338 (14%), Positives = 85/338 (25%), Gaps = 117/338 (34%)

Query: 123 KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDP 182
           +DG +                              LH+A   ++      ++        
Sbjct: 6   EDGDSF-----------------------------LHLAIIHEEKALTMEVIR------- 29

Query: 183 ASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS 242
                           +  +    +  +    TPLH+A       +A  LL    D    
Sbjct: 30  ---------------QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV------RGETPLHLAARANQTDIIR 296
              G TPLH+A   GC+  V  L Q+   P + ++       G T LHLA+      I+ 
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKL 356
           +L+  GA V+A                                 +    G TAL +A  L
Sbjct: 135 LLVSLGADVNA---------------------------------QEPCNGRTALHLAVDL 161

Query: 357 GYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPT 415
                      +   L+    D       G +P  L        + +             
Sbjct: 162 QN-------PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ------------ 202

Query: 416 KMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
                  L +   +                     + +
Sbjct: 203 -------LGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 15/110 (13%)

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
           +  ++G + LHL    +   +                M++   +    A  N ++    T
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALT---------------MEVIRQVKGDLAFLNFQNNLQQT 47

Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           PLHL+      +++  LL  G D       G+T L +A + G ++    L
Sbjct: 48  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  154 bits (392), Expect = 4e-44
 Identities = 56/299 (18%), Positives = 82/299 (27%), Gaps = 89/299 (29%)

Query: 14  AGHLDKIIEHL-KNNVDI-NTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGN 71
                 +I         + N  +  G  ALHLA++         LL   A+ +     G 
Sbjct: 1   GDAPA-VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 59

Query: 72  TALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-----DTRGKDGF 126
           T LH A                                 V  +L+ N     D R  DG 
Sbjct: 60  TPLHAAV--------------------------SADAQGVFQILIRNRATDLDARMHDGT 93

Query: 127 TPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVL 186
           TPL                              +AA+       + L             
Sbjct: 94  TPL-----------------------------ILAARLAVEGMLEDL------------- 111

Query: 187 SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSG 246
                        I +  + +     G + LH A+   N   A +LL   A+ +      
Sbjct: 112 -------------INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158

Query: 247 LTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
            TPL +A+  G       LL + AN DI       P  +A      DI+R+L       
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  153 bits (389), Expect = 1e-43
 Identities = 57/270 (21%), Positives = 89/270 (32%), Gaps = 63/270 (23%)

Query: 198 YLIKNEHN-PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFM 256
             I    +  + T ++G T LH+A+ Y     A  LL+  AD N     G TPLH A   
Sbjct: 9   DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 68

Query: 257 GCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA 315
               +   L++N A + D     G TPL LAAR     ++  L+ + A V+A    G +A
Sbjct: 69  DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 316 LSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIA 375
           L  A                           +                        L+  
Sbjct: 129 LHWA-----------------------AAVNN------------------VDAAVVLLKN 147

Query: 376 KGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES 434
             +   ++    TPL L A+E     A++LL +                    A  +   
Sbjct: 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDH-------------------FANRDITD 188

Query: 435 VAGFTPLHLSASEGHADMSAMLLEHGADVS 464
                P  ++    H D+  +L E+    S
Sbjct: 189 HMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  147 bits (374), Expect = 2e-41
 Identities = 64/269 (23%), Positives = 103/269 (38%), Gaps = 63/269 (23%)

Query: 224 GNEGVANILLDKRADV-NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP 282
               V +  + + A + N + ++G T LH+A+     +    LL+  A+ +I    G TP
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 283 LHLAARANQTDIIRILLRNGAQ-VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKK 341
           LH A  A+   + +IL+RN A  +DAR  +G T L +A +L                   
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV----------------- 104

Query: 342 RGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGV 400
                                   +G+ E LI +  D       G + LH  A  + V  
Sbjct: 105 ------------------------EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140

Query: 401 AELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
           A +LLKN                   GA  + ++    TPL L+A EG  + + +LL+H 
Sbjct: 141 AVVLLKN-------------------GANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 461 ADVSHAAKEGHTALSIAQKLGYISVEESL 489
           A+             IAQ+  +  +   L
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  145 bits (368), Expect = 1e-40
 Identities = 64/289 (22%), Positives = 102/289 (35%), Gaps = 85/289 (29%)

Query: 48  GHLHVVTELLSRGANVDSAT-KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQ 106
               V+++ + +GA++ + T + G TALH+A+                          + 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAA--------------------------RY 35

Query: 107 GHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAA 162
                   LLE     + +   G TPL                             H A 
Sbjct: 36  SRSDAAKRLLEASADANIQDNMGRTPL-----------------------------HAAV 66

Query: 163 KKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH 222
             D     ++L+                 N AT         + D     G TPL +A+ 
Sbjct: 67  SADAQGVFQILIR----------------NRAT---------DLDARMHDGTTPLILAAR 101

Query: 223 YGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP 282
              EG+   L++  ADVN     G + LH A+ +  ++  + LL+N AN D+   R ETP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161

Query: 283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           L LAAR    +  ++LL + A  D           IAQ+  +  +   L
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  144 bits (366), Expect = 2e-40
 Identities = 52/286 (18%), Positives = 92/286 (32%), Gaps = 74/286 (25%)

Query: 136 GHDKVVAVLLEN-----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTT 190
               V++  +       +   +    ALH+AA+   + AAK L                 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL----------------- 44

Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAKSGLTP 249
                    ++   + ++    G TPLH A     +GV  IL+  RA D++     G TP
Sbjct: 45  ---------LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 95

Query: 250 LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
           L +A+ +    ++  L+ + A+ +     G++ LH AA  N  D   +LL+NGA  D + 
Sbjct: 96  LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155

Query: 310 REGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT 369
               T L +A + G                                              
Sbjct: 156 NREETPLFLAAREGS-----------------------------------------YETA 174

Query: 370 ETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP 414
           + L+    +          P  +  +     +  LL + N      
Sbjct: 175 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (289), Expect = 2e-29
 Identities = 47/259 (18%), Positives = 82/259 (31%), Gaps = 70/259 (27%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
            G T+   AAR    D   + L + + D N  +  G   LH A       V   L+   A
Sbjct: 24  TGETALHLAARYSRSD-AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82

Query: 62  -NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
            ++D+    G T L +A+                          +   + ++  L+ +  
Sbjct: 83  TDLDARMHDGTTPLILAA--------------------------RLAVEGMLEDLINSHA 116

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKL 172
             +     G + L  A    +     VLL+N    D +       L +AA++   + AK+
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176

Query: 173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL 232
           LL+                + A          N D+T      P  IA    +  +  +L
Sbjct: 177 LLD----------------HFA----------NRDITDHMDRLPRDIAQERMHHDIVRLL 210

Query: 233 LDKRADVNFSAKSGLTPLH 251
            +     +         LH
Sbjct: 211 DEYNLVRS-------PQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  110 bits (278), Expect = 5e-28
 Identities = 48/244 (19%), Positives = 80/244 (32%), Gaps = 70/244 (28%)

Query: 257 GCMNIVIYLLQNDAN-PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA 315
               ++   +   A+  +     GET LHLAAR +++D  + LL   A  + +   G T 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 316 LSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIA 375
           L  A                                              +GV + LI  
Sbjct: 62  LHAAVSADA-----------------------------------------QGVFQILIRN 80

Query: 376 KGDG--EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAE 433
           +      +  +G TPL L A+    G+ E L+                      A  NA 
Sbjct: 81  RATDLDARMHDGTTPLILAARLAVEGMLEDLI-------------------NSHADVNAV 121

Query: 434 SVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVT 493
              G + LH +A+  + D + +LL++GA+         T L +A + G            
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS-------YETA 174

Query: 494 ETLI 497
           + L+
Sbjct: 175 KVLL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  152 bits (388), Expect = 2e-43
 Identities = 51/290 (17%), Positives = 84/290 (28%), Gaps = 89/290 (30%)

Query: 40  ALHLASKDGHLHVVTELL-SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFT 98
            LH A  +     V ELL S+ + +    + G   LH +                     
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV-------------------- 44

Query: 99  PLAVAMQQGHDKVVAVLLEN-------DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
                      ++ + LL         D     G+TP                       
Sbjct: 45  ------SFQAHEITSFLLSKMENVNLDDYPDDSGWTPF---------------------- 76

Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
                  HIA    + +  K L                               + +  + 
Sbjct: 77  -------HIACSVGNLEVVKSLY-------------DRPLKP-----------DLNKITN 105

Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
            G T LH+A       V+  L++  A V    K    PLH A+ +G + ++  L     +
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165

Query: 272 P-DIPTVRGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIA 319
             +    +G TPL  A      D   +L+ + GA+ D    +G  A  +A
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  151 bits (385), Expect = 5e-43
 Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 23/220 (10%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN---FSAKSGLTPLHVAS 254
            L           + G  PLH +  +    + + LL K  +VN   +   SG TP H+A 
Sbjct: 21  LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80

Query: 255 FMGCMNIVIYLLQNDANPDI--PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREG 312
            +G + +V  L      PD+   T +G T LHLA      ++ + L+ NGA V  + +  
Sbjct: 81  SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140

Query: 313 HTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT 369
              L  A  +G + + E L   G +    +  + ++G T L  A   G+           
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSA---VNWQDKQGWTPLFHALAEGH-------GDAA 190

Query: 370 ETLIIAKG--DGEKHKNGLTPLHLCAQEDRVGVAELLLKN 407
             L+   G         G     +   E    V +  L N
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  146 bits (372), Expect = 4e-41
 Identities = 56/310 (18%), Positives = 94/310 (30%), Gaps = 96/310 (30%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNN-VDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
            +    +A       K+ E L +    +   + +G   LH +       + + LLS+  N
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 63  V---DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN- 118
           V   D     G T  HIA                             G+ +VV  L +  
Sbjct: 62  VNLDDYPDDSGWTPFHIAC--------------------------SVGNLEVVKSLYDRP 95

Query: 119 -----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLL 173
                +     G T                              LH+A  K   + ++ L
Sbjct: 96  LKPDLNKITNQGVTC-----------------------------LHLAVGKKWFEVSQFL 126

Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
           +E   +V                   IK+        K    PLH A+  G+  +  +L 
Sbjct: 127 IENGASVR------------------IKD--------KFNQIPLHRAASVGSLKLIELLC 160

Query: 234 DK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND-ANPDIPTVRGETPLHLAARANQ 291
              ++ VN+  K G TPL  A   G  +  + L++   A  D+   +G     +A     
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---N 217

Query: 292 TDIIRILLRN 301
             + +  L N
Sbjct: 218 EQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  120 bits (303), Expect = 2e-31
 Identities = 49/262 (18%), Positives = 73/262 (27%), Gaps = 71/262 (27%)

Query: 246 GLTPLHVASFMGCMNIVI-YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
              PLH A        V   L    +        G  PLH +      +I   LL     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
           V+                                       G T   IA  +G + V +S
Sbjct: 62  VNLD-------------------------------DYPDDSGWTPFHIACSVGNLEVVKS 90

Query: 365 LKGVTETLIIAKGDG----EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA 420
           L          +       +    G+T LHL   +    V++ L++N             
Sbjct: 91  L--------YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN------------- 129

Query: 421 TTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG-ADVSHAAKEGHTALSIAQK 479
                 GA    +      PLH +AS G   +  +L   G + V+   K+G T L  A  
Sbjct: 130 ------GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183

Query: 480 LGYISVEESLKGVTETLIIAKG 501
            G+             L+   G
Sbjct: 184 EGH-------GDAAVLLVEKYG 198

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  102 bits (257), Expect = 5e-25
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL---KNNVDINTANANGLNALHLASKDGHLHVVTELLSR 59
            G T F  A   G+L+ +++ L       D+N     G+  LHLA       V   L+  
Sbjct: 71  SGWTPFHIACSVGNLE-VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129

Query: 60  GANVDSATKKGNTALHIASLG------EFLVPVWLGD--FKQGDGFTPLAVAMQQGHDKV 111
           GA+V    K     LH A+        E L  +      ++   G+TPL  A+ +GH   
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189

Query: 112 VAVLLEN-----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
             +L+E      D     G     VA+   +++V    L N
Sbjct: 190 AVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  150 bits (381), Expect = 1e-42
 Identities = 40/290 (13%), Positives = 77/290 (26%), Gaps = 83/290 (28%)

Query: 31  NTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGD 90
                 G   +  A          EL     ++   T   +T     +            
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT------------ 53

Query: 91  FKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTR 150
                          +G   ++      + + +    PL                     
Sbjct: 54  --------------SKGRTGLIPSNYVAE-QAESIDNPL--------------------- 77

Query: 151 GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS 210
                   H AAK+ +    +                            + N    +   
Sbjct: 78  --------HEAAKRGNLSWLR--------------------------ECLDNRVGVNGLD 103

Query: 211 KSGFTPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
           K+G T L+ A H G++ +  +L  +   ++N   K G T LH A++ G  +IV  LL   
Sbjct: 104 KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163

Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           A  D+  +  +    +A  A    +++      A       E +     +
Sbjct: 164 ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  149 bits (378), Expect = 3e-42
 Identities = 41/274 (14%), Positives = 75/274 (27%), Gaps = 67/274 (24%)

Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
           P    K G   +  A +       + L  +  D+ +      T     +  G   ++   
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
              +          + PLH AA+      +R  L N   V+   + G TAL  A      
Sbjct: 65  YVAEQAES-----IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA------ 113

Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG--EKHK 383
                               GH                  K + E L         +++K
Sbjct: 114 -----------------CHGGH------------------KDIVEMLFTQPNIELNQQNK 138

Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
            G T LH  A +    + +LLL                     GA+ +  ++       +
Sbjct: 139 LGDTALHAAAWKGYADIVQLLLAK-------------------GARTDLRNIEKKLAFDM 179

Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
           + +   A +        A  + +  E +     +
Sbjct: 180 ATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  125 bits (316), Expect = 2e-33
 Identities = 39/263 (14%), Positives = 62/263 (23%), Gaps = 66/263 (25%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
           G     RA          E      DI              +  G        L     V
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-----GLIPSNYV 66

Query: 64  DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----D 119
               +  +  LH A+                          ++G+   +   L+N    +
Sbjct: 67  AEQAESIDNPLHEAA--------------------------KRGNLSWLRECLDNRVGVN 100

Query: 120 TRGKDGFTPLAVAMQQGHDKVVAVLLEN-----DTRGKVRLPALHIAAKKDDTKAAKLLL 174
              K G T L  A   GH  +V +L        + + K+   ALH AA K      +LLL
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160

Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
                              A            D+ +        +A++     +      
Sbjct: 161 A----------------KGA----------RTDLRNIEKKLAFDMATNAACASLLKKKQG 194

Query: 235 KRADVNFSAKSGLTPLHVASFMG 257
             A    S          +    
Sbjct: 195 TDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  118 bits (299), Expect = 6e-31
 Identities = 40/235 (17%), Positives = 65/235 (27%), Gaps = 36/235 (15%)

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           P  P   G+  +  A    +      L      +        T        G   +  S 
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG--EKHKNGLTPL 389
                  + ++       L  A K G +S             +    G     K G T L
Sbjct: 65  ------YVAEQAESIDNPLHEAAKRGNLSWLREC--------LDNRVGVNGLDKAGSTAL 110

Query: 390 HLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
           +         + E+L                        + N ++  G T LH +A +G+
Sbjct: 111 YWACHGGHKDIVEMLFTQ------------------PNIELNQQNKLGDTALHAAAWKGY 152

Query: 450 ADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL--KGVTETLIIAKGD 502
           AD+  +LL  GA       E   A  +A      S+ +         TL  A+  
Sbjct: 153 ADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  102 bits (257), Expect = 3e-25
 Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 66/231 (28%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
              T++ +    G        L  +  +     +  N LH A+K G+L  + E L     
Sbjct: 44  MSDTNWWKGTSKGRTG-----LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG 98

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
           V+   K G+TAL+ A                             GH  +V +L       
Sbjct: 99  VNGLDKAGSTALYWAC--------------------------HGGHKDIVEMLFTQPNIE 132

Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
            + + K G T L  A  +G+  +V +LL      D R   +  A  +A         K  
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLK-- 190

Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYG 224
                                        +    +++   +     +    
Sbjct: 191 ------------------------KKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.5 bits (202), Expect = 7e-18
 Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 33/141 (23%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL--KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
            G T+   A   GH D I+E L  + N+++N  N  G  ALH A+  G+  +V  LL++G
Sbjct: 105 AGSTALYWACHGGHKD-IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163

Query: 61  ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDT 120
           A  D    +   A  +A+                                ++      D 
Sbjct: 164 ARTDLRNIEKKLAFDMAT--------------------------NAACASLLKKKQGTDA 197

Query: 121 ----RGKDGFTPLAVAMQQGH 137
                  + +     +  + H
Sbjct: 198 VRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 8/49 (16%), Positives = 15/49 (30%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLH 51
           E   +F  A  A     + +    +     +NA        +  + H H
Sbjct: 172 EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  148 bits (374), Expect = 2e-41
 Identities = 56/254 (22%), Positives = 92/254 (36%), Gaps = 32/254 (12%)

Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           S     ++A     + +   +L  ++    + +   T LH A   G   IV +LLQ    
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            +     G +PLH+AA A   +I++ LL  GA V+A  + G T L  A       +   L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD--GEKHKNGLTPL 389
                +    +     TA+  A   G + +          +++        +   G TPL
Sbjct: 126 -LEGGANPDAKDHYDATAMHRAAAKGNLKMVH--------ILLFYKASTNIQDTEGNTPL 176

Query: 390 HLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
           HL   E+RV  A+ L+                     GA    E+    TPL ++   G 
Sbjct: 177 HLACDEERVEEAKFLV-------------------TQGASIYIENKEEKTPLQVAK--GG 215

Query: 450 ADMSAMLLEHGADV 463
             +    L  G + 
Sbjct: 216 LGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  131 bits (331), Expect = 2e-35
 Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 35/258 (13%)

Query: 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
           +   ++A      +  +                           ++ ++     T +   
Sbjct: 8   IMICNLAYSGKLDELKE--------------------------RILADKSLATRTDQDSR 41

Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           T LH A   G+  +   LL     VN    +G +PLH+A+  G   IV  LL   A+ + 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101

Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
               G TPLH AA  N+ +I  +LL  GA  DA+     TA+  A   G + +   L   
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL-LF 160

Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQ 394
            ++    +  EG+T L +A     +   + L     ++        ++K   TPL +   
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI------YIENKEEKTPLQVAK- 213

Query: 395 EDRVGVAELLLKNNAQVD 412
              +G+    L    +  
Sbjct: 214 -GGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  131 bits (330), Expect = 3e-35
 Identities = 58/281 (20%), Positives = 96/281 (34%), Gaps = 62/281 (22%)

Query: 34  NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQ 93
             + +   +LA       +   +L+  +      +   TALH A                
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC--------------- 48

Query: 94  GDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-- 147
                        GH ++V  LL+     + +   G++PL +A   G D++V  LL    
Sbjct: 49  -----------SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97

Query: 148 --DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHN 205
             +   +     LH AA K+  + A                            L++   N
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAV--------------------------MLLEGGAN 131

Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
           PD       T +H A+  GN  + +ILL  +A  N     G TPLH+A     +    +L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
           +   A+  I     +TPL +A       +I   L  G +  
Sbjct: 192 VTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  128 bits (323), Expect = 3e-34
 Identities = 59/278 (21%), Positives = 96/278 (34%), Gaps = 63/278 (22%)

Query: 6   TSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVD 64
                 A +G LD++ E +  +       + +   ALH A   GH  +V  LL  G  V+
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 65  SATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DT 120
                G + LHIA+                            G D++V  LL      + 
Sbjct: 68  DKDDAGWSPLHIAA--------------------------SAGXDEIVKALLVKGAHVNA 101

Query: 121 RGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
             ++G TPL  A  +   ++  +LLE     D +      A+H AA K + K        
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH----- 156

Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
                                 L+  + + ++    G TPLH+A        A  L+ + 
Sbjct: 157 ---------------------ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195

Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           A +    K   TPL VA   G + +++  L       +
Sbjct: 196 ASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 97.2 bits (242), Expect = 4e-23
 Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 34/215 (15%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAE 335
                +LA      ++   +L + +      ++  TAL  A   G+  + E L   G   
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV-- 64

Query: 336 RSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQ 394
              +  +   G + L IA              + + L++        ++NG TPLH  A 
Sbjct: 65  --PVNDKDDAGWSPLHIA-------ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115

Query: 395 EDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSA 454
           ++R  +A +LL                   E GA P+A+     T +H +A++G+  M  
Sbjct: 116 KNRHEIAVMLL-------------------EGGANPDAKDHYDATAMHRAAAKGNLKMVH 156

Query: 455 MLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           +LL + A  +    EG+T L +A     +   + L
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLE 425
           E   + +   +L        + E +L + +      +               +I   LL+
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61

Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
            G   N +  AG++PLH++AS G  ++   LL  GA V+   + G T L  A       +
Sbjct: 62  LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121

Query: 486 EESL 489
              L
Sbjct: 122 AVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 13/155 (8%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
           G +    AA AG  + +   L     +N  N NG   LH A+      +   LL  GAN 
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 64  DSATKKGNTALHIASLGEFLVPVWL-------GDFKQGDGFTPLAVAMQQGHDKVVAVLL 116
           D+      TA+H A+    L  V +        + +  +G TPL +A  +   +    L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 117 EN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
                     K+  TPL VA  +G   ++   L  
Sbjct: 193 TQGASIYIENKEEKTPLQVA--KGGLGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 20/76 (26%), Positives = 33/76 (43%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
              T+  RAA  G+L  +   L      N  +  G   LHLA  +  +     L+++GA+
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197

Query: 63  VDSATKKGNTALHIAS 78
           +    K+  T L +A 
Sbjct: 198 IYIENKEEKTPLQVAK 213

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  145 bits (368), Expect = 3e-41
 Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 29/196 (14%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            +    ++ +  A +L L+                           E++ +     GF+P
Sbjct: 8   DIFTQCREGNAVAVRLWLD-------------------------NTENDLNQGDDHGFSP 42

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH A   G   V  +L+ + A +N   +   TPLH+A+  G  +IV  LLQ  A+ +   
Sbjct: 43  LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 102

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GA 333
             G  PLH A    Q  +   L+ NGA V    + G   +  A+      + E     G 
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

Query: 334 -AERSQLKKRGREGHT 348
              R   K    +G T
Sbjct: 163 NLNRIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  126 bits (320), Expect = 3e-34
 Identities = 46/242 (19%), Positives = 67/242 (27%), Gaps = 68/242 (28%)

Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
           S      +      GN     + LD    D+N     G +PLH A   G   +V  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
            A  ++     +TPLHLAA     DI++ LL+  A ++A    G+  L  A         
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA--------- 112

Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLT 387
                            G                     V E L+         +K G  
Sbjct: 113 --------------CFWGQDQ------------------VAEDLVANGALVSICNKYGEM 140

Query: 388 PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE 447
           P+       R  + E   K                    G   N        P   +  +
Sbjct: 141 PVDKAKAPLRELLRERAEKM-------------------GQNLNR------IPYKDTFWK 175

Query: 448 GH 449
           G 
Sbjct: 176 GT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  120 bits (304), Expect = 4e-32
 Identities = 44/260 (16%), Positives = 72/260 (27%), Gaps = 92/260 (35%)

Query: 33  ANANGLNALHLASKDGHLHVVTELLSRGAN-VDSATKKGNTALHIASLGEFLVPVWLGDF 91
            +   ++ +    ++G+   V   L    N ++     G + LH A              
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC------------- 47

Query: 92  KQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
                        ++G   VV +L+      +   +   TPL +A   GH  +V  LL+ 
Sbjct: 48  -------------REGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94

Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
                                              A +      NA        NEH   
Sbjct: 95  K----------------------------------ADI------NA-------VNEH--- 104

Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ 267
                G  PLH A  +G + VA  L+   A V+   K G  P+  A       +     +
Sbjct: 105 -----GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159

Query: 268 NDANPDIPTVRGETPLHLAA 287
              N +        P     
Sbjct: 160 MGQNLN------RIPYKDTF 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  116 bits (294), Expect = 9e-31
 Identities = 39/234 (16%), Positives = 73/234 (31%), Gaps = 67/234 (28%)

Query: 246 GLTPLHVASFMGCMNIVIYLLQNDAN-PDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
            +  +      G    V   L N  N  +     G +PLH A R  ++ ++ +L+  GA+
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64

Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
           ++   R   T L +A                          GH                 
Sbjct: 65  INVMNRGDDTPLHLA-----------------------ASHGH----------------- 84

Query: 365 LKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTL 423
            + + + L+  K D    +++G  PLH      +  VAE L+ N                
Sbjct: 85  -RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN---------------- 127

Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH-----AAKEGHT 472
              GA  +  +  G  P+  + +     +     + G +++         +G T
Sbjct: 128 ---GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  105 bits (266), Expect = 6e-27
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 28/165 (16%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL--KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
           E         R G+    +         D+N  + +G + LH A ++G   VV  L+ RG
Sbjct: 4   EFMDDIFTQCREGNAV-AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 61  ANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQ 106
           A ++   +  +T LH+A+        + L+       +           G  PL  A   
Sbjct: 63  ARINVMNRGDDTPLHLAASHGHRDIVQKLL-------QYKADINAVNEHGNVPLHYACFW 115

Query: 107 GHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
           G D+V   L+ N        K G  P+  A     + +     + 
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.5 bits (192), Expect = 8e-17
 Identities = 28/138 (20%), Positives = 43/138 (31%), Gaps = 32/138 (23%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
             T    AA  GH D I++ L +   DIN  N +G   LH A   G   V  +L++ GA 
Sbjct: 72  DDTPLHLAASHGHRD-IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRG 122
           V    K G   +  A                               + +     +    G
Sbjct: 131 VSICNKYGEMPVDKAK--------------------------APLRELLRERAEKM---G 161

Query: 123 KD-GFTPLAVAMQQGHDK 139
           ++    P      +G  +
Sbjct: 162 QNLNRIPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.2 bits (173), Expect = 3e-14
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 18/107 (16%)

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
              +  +    +E       L L N                       N     GF+PLH
Sbjct: 3   PEFMDDIFTQCREGNAVAVRLWLDNTE------------------NDLNQGDDHGFSPLH 44

Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
            +  EG + +  ML+  GA ++   +   T L +A   G+  + + L
Sbjct: 45  WACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  144 bits (365), Expect = 5e-40
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 22/242 (9%)

Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
           P+    +G   L            +  +     V F+    L  L  +S  G  ++V  +
Sbjct: 1   PE---ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRI 56

Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
           +    +P +P   G T LH A  A  T+I++ L++ G  V+A   +G T L  A     +
Sbjct: 57  IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV 116

Query: 326 SVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEK 381
            V + L   GAA  +       +         + GY          ++ L   +   G  
Sbjct: 117 QVCKFLVESGAAVFAMTYS-DMQTAADKCEEMEEGY-------TQCSQFLYGVQEKMGIM 168

Query: 382 HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPL 441
           +K  +  L     +      EL +K    +    + D       +    + E   G+ P 
Sbjct: 169 NKGVIYALWDYEPQ---NDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKE---GYVPR 222

Query: 442 HL 443
           +L
Sbjct: 223 NL 224

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  131 bits (331), Expect = 3e-35
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 34/239 (14%)

Query: 123 KDGFTPLAVAMQQGHDKVVAVLLENDTR---GKVRLPALHIAAKKDDTKAAKLLLEVSCT 179
             G   L    +    K  +  + +  R     + L  L  ++ + +    +        
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQ-------- 54

Query: 180 VDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV 239
                              +I    +P + +  G T LH A   G+  +   L+    +V
Sbjct: 55  ------------------RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96

Query: 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE---TPLHLAARANQTDIIR 296
           N +   G TPLH A+    + +  +L+++ A     T                  T   +
Sbjct: 97  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156

Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
            L     ++    +    AL   +       E  +   +   +  R  E       A+ 
Sbjct: 157 FLYGVQEKMGIMNKGVIYALWDYEPQNDD--ELPMKEGDCMTIIHREDEDEIEWWWARL 213

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  118 bits (299), Expect = 9e-31
 Identities = 39/262 (14%), Positives = 67/262 (25%), Gaps = 61/262 (23%)

Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
            +G   L               + +              L  ++   + D+++ ++    
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
                  EG TAL  A                          GH                
Sbjct: 62  DPSLPNDEGITALHNA-----------------------VCAGH---------------- 82

Query: 364 SLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATT 422
               + + L+    +      +G TPLH  A  + V V + L+++ A V   T  D+ T 
Sbjct: 83  --TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT- 139

Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
                                   EG+   S  L      +    K    AL   +    
Sbjct: 140 ---------------AADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND 184

Query: 483 ISVEESLKGVTETLIIAKGDGE 504
              E  +K      II + D +
Sbjct: 185 D--ELPMKEGDCMTIIHREDED 204

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  116 bits (293), Expect = 6e-30
 Identities = 35/296 (11%), Positives = 76/296 (25%), Gaps = 86/296 (29%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNN-VDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           G  S     R             + + +   N   L  L  +S +G   +V  ++    +
Sbjct: 5   GQVSLPPGKRTNLRK-TGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
                 +G TALH A                             GH ++V  L++     
Sbjct: 63  PSLPNDEGITALHNAV--------------------------CAGHTEIVKFLVQFGVNV 96

Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKAAK 171
           +    DG+TPL  A    + +V   L+E+                      ++  T+ ++
Sbjct: 97  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156

Query: 172 LLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI 231
                                     +L   +    + +K     L        +    +
Sbjct: 157 --------------------------FLYGVQEKMGIMNKGVIYALWDYEP---QNDDEL 187

Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA 287
            + +   +    +               + + +      + +     G  P +L  
Sbjct: 188 PMKEGDCMTIIHREDE------------DEIEWWWARLNDKE-----GYVPRNLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  111 bits (280), Expect = 3e-28
 Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 23/183 (12%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
                 L ++  G  D +++ +     D +  N  G+ ALH A   GH  +V  L+  G 
Sbjct: 36  LPLALLLDSSLEGEFD-LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94

Query: 62  NVDSATKKGNTALHIASLG------EFLV----PVWLGDFKQGDGFTPLAVAMQQGHDKV 111
           NV++A   G T LH A+        +FLV     V+   +            M++G+ + 
Sbjct: 95  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

Query: 112 VAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDT-----RGKVRLPALHIAA 162
              L           K     L     Q  D++   + E D      R          A 
Sbjct: 155 SQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL--PMKEGDCMTIIHREDEDEIEWWWAR 212

Query: 163 KKD 165
             D
Sbjct: 213 LND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  110 bits (277), Expect = 8e-28
 Identities = 34/273 (12%), Positives = 67/273 (24%), Gaps = 77/273 (28%)

Query: 36  NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
            G  +L    +       +E ++ G  V          L  +S                 
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRV-KFNPLPLALLLDSS----------------- 45

Query: 96  GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN---- 147
                     +G   +V  ++           +G T L  A+  GH ++V  L++     
Sbjct: 46  ---------LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96

Query: 148 ---DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEH 204
              D+ G      LH AA  ++ +  K L+E    V            A           
Sbjct: 97  NAADSDGW---TPLHCAASCNNVQVCKFLVESGAAV-----------FAM---------- 132

Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
               +              G    +  L   +  +    K  +  L          + + 
Sbjct: 133 --TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMK 190

Query: 265 ------LLQNDANPDIPTVRGETPLHLAARANQ 291
                 ++  +          E     A   ++
Sbjct: 191 EGDCMTIIHREDE-------DEIEWWWARLNDK 216

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  140 bits (354), Expect = 2e-38
 Identities = 52/293 (17%), Positives = 97/293 (33%), Gaps = 56/293 (19%)

Query: 112 VAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDT 167
           V  ++ + T   +G     +  + GH               +  +        AA+K D 
Sbjct: 3   VNKIIGSRT-AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADE 58

Query: 168 KAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEG 227
           +A   LLE                +            + D   ++G T L   +  G++ 
Sbjct: 59  QALSQLLE----------------DR-----------DVDAVDENGRTALLFVAGLGSDK 91

Query: 228 VANILLDKRADVNF-SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
              +L +  AD++    + GLT LH+A+      +V  L++  A+ ++   RG T L LA
Sbjct: 92  CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151

Query: 287 ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREG 346
               +T      ++ G ++     E    +   Q   Y  V+E         ++KRG +G
Sbjct: 152 REILKTTPKGNPMQFGRRIGL---EKVINVLEGQVFEYAEVDE--------IVEKRG-KG 199

Query: 347 HTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG 399
                + +       E                 +  K+    L     E  +G
Sbjct: 200 KDVEYLVRWKDGGDCEWVK--------GVHVAEDVAKDYEDGLEYAVAESVIG 244

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  135 bits (341), Expect = 1e-36
 Identities = 55/297 (18%), Positives = 102/297 (34%), Gaps = 62/297 (20%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
              I ++     A + L+E               G++ +           DV S+   TP
Sbjct: 4   NKIIGSRTAGEGAMEYLIE------------WKDGHSPSWVPSS--YIAADVVSE-YETP 48

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
              A+   +E   + LL +  DV+   ++G T L   + +G    V  L +  A+ D   
Sbjct: 49  WWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107

Query: 277 VR-GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---G 332
           +R G T LH+AA   + +++  L+  GA ++     G TAL +A+++   + + +    G
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 167

Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLC 392
                   + G E    +   Q   Y  V+E +              EK   G    +L 
Sbjct: 168 R-------RIGLEKVINVLEGQVFEYAEVDEIV--------------EKRGKGKDVEYLV 206

Query: 393 AQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
             +D      +   +                    A+  A+       L  + +E  
Sbjct: 207 RWKDGGDCEWVKGVH-------------------VAEDVAK--DYEDGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  129 bits (327), Expect = 1e-34
 Identities = 44/298 (14%), Positives = 83/298 (27%), Gaps = 76/298 (25%)

Query: 30  INTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLG 89
            +     G     +  KDGH           A+V     +  T    A+           
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAA----------- 53

Query: 90  DFKQGDGFTPLAVAMQQGHDKVVAVLLEN---DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
                          ++  ++ ++ LLE+   D   ++G T L      G DK V +L E
Sbjct: 54  ---------------RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98

Query: 147 -----NDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIK 201
                +    +  L ALH+AA     +  + L+E                  A       
Sbjct: 99  AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE----------------LGA------- 135

Query: 202 NEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNI 261
              + +V  + G T L +A            +     +       +  +          +
Sbjct: 136 ---DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEV 189

Query: 262 VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
              + +           G+   +L    +  D   +   + A+  A+  E    L  A
Sbjct: 190 DEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  129 bits (327), Expect = 1e-34
 Identities = 47/269 (17%), Positives = 74/269 (27%), Gaps = 50/269 (18%)

Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
           G     I    G+           ADV        TP   A+       +  LL+ D + 
Sbjct: 15  GAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDV 70

Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332
           D     G T L   A       +R+L   GA +D R   G                    
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-------------------- 110

Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHL 391
                        G TAL +A              V E L+    D   + + GLT L L
Sbjct: 111 -------------GLTALHMAAGYVR-------PEVVEALVELGADIEVEDERGLTALEL 150

Query: 392 CAQEDRVGVAELLLKNNAQV---DTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
             +  +       ++   ++        ++          +   +   G    +L   + 
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210

Query: 449 HADMSAMLLEHGADVSHAAKEGHTALSIA 477
             D   +   H A+    AK+    L  A
Sbjct: 211 GGDCEWVKGVHVAEDV--AKDYEDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  118 bits (297), Expect = 2e-30
 Identities = 44/271 (16%), Positives = 76/271 (28%), Gaps = 51/271 (18%)

Query: 1   SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
           +GEG   +L   + GH    +       D+    +        A++      +++LL   
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-D 67

Query: 61  ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE--- 117
            +VD+  + G TAL   +                            G DK V +L E   
Sbjct: 68  RDVDAVDENGRTALLFVA--------------------------GLGSDKCVRLLAEAGA 101

Query: 118 --NDTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTK 168
             +    + G T L +A      +VV  L+E        D RG     AL +A +   T 
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL---TALELAREILKTT 158

Query: 169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV 228
                ++    +     L           +              G    ++         
Sbjct: 159 PKGNPMQFGRRIG----LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214

Query: 229 ANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
             +     A+    AK     L  A     +
Sbjct: 215 EWVKGVHVAEDV--AKDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  108 bits (272), Expect = 4e-27
 Identities = 55/298 (18%), Positives = 71/298 (23%), Gaps = 94/298 (31%)

Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
           G     I S    EG                        +    G     +      A+ 
Sbjct: 1   GEVNKIIGSRTAGEGA-------------------MEYLIEWKDGHSPSWVPSSYIAADV 41

Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332
                  ETP   AAR      +  LL     VDA    G TAL     LG       L 
Sbjct: 42  V---SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL- 96

Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG---DGEKHKNGLTPL 389
                                                       G   D    + GLT L
Sbjct: 97  -----------------------------------------AEAGADLDHRDMRGGLTAL 115

Query: 390 HLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
           H+ A   R  V E L+                   E GA    E   G T L L+     
Sbjct: 116 HMAAGYVRPEVVEALV-------------------ELGADIEVEDERGLTALELAREILK 156

Query: 450 ADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL----KGVTETLIIAKGDG 503
                  ++ G  +     E    +   Q   Y  V+E +    KG     ++   DG
Sbjct: 157 TTPKGNPMQFGRRIGL---EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDG 211

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  136 bits (344), Expect = 8e-38
 Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 26/163 (15%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNNVD-INTANANGLNALHLASKDGHLHVVTELLSRGAN 62
              S  + A  G LD++ EHL+   + +N  +  G   L  AS  G +  V  LL  GA+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 63  VDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQGH 108
                K+  +AL +AS G        L+       ++         +G TPL  A++  H
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLL-------ERDVDINIYDWNGGTPLLYAVRGNH 114

Query: 109 DKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
            K V  LL       T    G+TP+ +A+  G+ KV  V+  +
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  130 bits (331), Expect = 5e-36
 Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 32/195 (16%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
           ++H  A + +    K  L                          K ++  +   + GFTP
Sbjct: 5   SIHQLAAQGELDQLKEHLR-------------------------KGDNLVNKPDERGFTP 39

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           L  AS +G       LL+  AD +  AK   + L +AS  G  +IV  LL+ D + +I  
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GA 333
             G TPL  A R N    +  LL  GA +   A  G+T + +A  LGY  V++ +     
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

Query: 334 AERSQLKKRGREGHT 348
               +L +       
Sbjct: 160 ----KLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  129 bits (326), Expect = 3e-35
 Identities = 44/230 (19%), Positives = 68/230 (29%), Gaps = 62/230 (26%)

Query: 213 GFTPLHIASHYGNEGVANILLDKRAD-VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
               +H  +  G        L K  + VN   + G TPL  AS  G +  V +LL+  A+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           P I     E+ L LA+    TDI+ +LL     ++     G T L  A            
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA------------ 109

Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLH 390
                       R  H                      E L+    D   +  +G TP+ 
Sbjct: 110 -----------VRGNHVK------------------CVEALLARGADLTTEADSGYTPMD 140

Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
           L        V +++                     +  K    ++    P
Sbjct: 141 LAVALGYRKVQQVIE-------------------NHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  127 bits (322), Expect = 8e-35
 Identities = 43/248 (17%), Positives = 71/248 (28%), Gaps = 86/248 (34%)

Query: 40  ALHLASKDGHLHVVTELLSRGAN-VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFT 98
           ++H  +  G L  + E L +G N V+   ++G T L  AS                    
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS-------------------- 44

Query: 99  PLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVR 154
                   G  + V  LLE         K+  + L                         
Sbjct: 45  ------AFGEIETVRFLLEWGADPHILAKERESAL------------------------- 73

Query: 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
                +A+    T    LLLE                +            + ++   +G 
Sbjct: 74  ----SLASTGGYTDIVGLLLER---------------DV-----------DINIYDWNGG 103

Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
           TPL  A    +      LL + AD+   A SG TP+ +A  +G   +   +  +      
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ 163

Query: 275 PTVRGETP 282
             +    P
Sbjct: 164 SNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  125 bits (318), Expect = 3e-34
 Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 62/229 (27%)

Query: 246 GLTPLHVASFMGCMNIVIYLLQNDAN-PDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
               +H  +  G ++ +   L+   N  + P  RG TPL  A+   + + +R LL  GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
               A+E  +ALS+A                          G+T                
Sbjct: 62  PHILAKERESALSLA-----------------------STGGYTD--------------- 83

Query: 365 LKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTL 423
              +   L+    D      NG TPL    + + V   E LL                  
Sbjct: 84  ---IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR---------------- 124

Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHT 472
              GA    E+ +G+TP+ L+ + G+  +  ++  H   +  +      
Sbjct: 125 ---GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 95.2 bits (238), Expect = 4e-23
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 32/131 (24%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           E  ++   A+  G+ D I+  L + +VDIN  + NG   L  A +  H+  V  LL+RGA
Sbjct: 68  ERESALSLASTGGYTD-IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
           ++ +    G T + +A                             G+ KV  V+  +   
Sbjct: 127 DLTTEADSGYTPMDLAV--------------------------ALGYRKVQQVIENHILK 160

Query: 119 -DTRGKDGFTP 128
                     P
Sbjct: 161 LFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 18/101 (17%)

Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
               +H  A +  +   +  L+                        N     GFTPL  +
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDN------------------LVNKPDERGFTPLIWA 43

Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
           ++ G  +    LLE GAD    AKE  +ALS+A   GY  +
Sbjct: 44  SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDI 84

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  135 bits (342), Expect = 1e-37
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 42/206 (20%)

Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +    +H  +  G        +++   +N + + G TPL  A+  G + +V +LLQN A+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           P +     E+ L LA     TDI+++LL  G  V+     G T L  A            
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA------------ 109

Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLH 390
                          H                      + L+ +  D   +  +G   + 
Sbjct: 110 -----------VHGNHVK------------------CVKMLLESGADPTIETDSGYNSMD 140

Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTK 416
           L        V +++  +  ++    K
Sbjct: 141 LAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  134 bits (341), Expect = 2e-37
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 25/164 (15%)

Query: 2   GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G    S  + A  G +  +   ++    IN  +  G   L  A+  G + VV  LL  GA
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 62  NVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQG 107
           +     K   +AL +A         + L+         G        +G TPL  A+   
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKMLL-------DCGVDVNEYDWNGGTPLLYAVHGN 113

Query: 108 HDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
           H K V +LLE+          G+  + +A+  G+  V  V+  +
Sbjct: 114 HVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  131 bits (333), Expect = 3e-36
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 26/175 (14%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
           ++H  A + +       +E                               + T + GFTP
Sbjct: 6   SVHQLAAQGEMLYLATRIEQEN--------------------------VINHTDEEGFTP 39

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           L  A+ +G   V   LL   AD     K   + L +A   G  +IV  LL    + +   
Sbjct: 40  LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
             G TPL  A   N    +++LL +GA        G+ ++ +A  LGY SV++ +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  127 bits (321), Expect = 1e-34
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 61/226 (26%)

Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
           +    +H  +  G M  +   ++ +   +     G TPL  AA   Q  ++  LL+NGA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
                +   +ALS+A                         +G+                 
Sbjct: 62  PQLLGKGRESALSLA-----------------------CSKGY----------------- 81

Query: 365 LKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTL 423
              + + L+    D  E   NG TPL      + V   ++LL++                
Sbjct: 82  -TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES---------------- 124

Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKE 469
              GA P  E+ +G+  + L+ + G+  +  ++  H   +    KE
Sbjct: 125 ---GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  126 bits (319), Expect = 3e-34
 Identities = 34/242 (14%), Positives = 63/242 (26%), Gaps = 85/242 (35%)

Query: 36  NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
               ++H  +  G +  +   + +   ++   ++G T L  A+                 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA----------------- 44

Query: 96  GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
                      G   VV  LL+N       GK   + L                      
Sbjct: 45  ---------AHGQIAVVEFLLQNGADPQLLGKGRESAL---------------------- 73

Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
                   +A  K  T   K                           L+    + +    
Sbjct: 74  -------SLACSKGYTDIVK--------------------------MLLDCGVDVNEYDW 100

Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +G TPL  A H  +     +LL+  AD      SG   + +A  +G  ++   +  +   
Sbjct: 101 NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160

Query: 272 PD 273
             
Sbjct: 161 LL 162

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  112 bits (283), Expect = 2e-29
 Identities = 39/213 (18%), Positives = 60/213 (28%), Gaps = 61/213 (28%)

Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
                +H  A   +   +   +     ++    EG T L  A                  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA------------------ 43

Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQED 396
                   G  A                  V E L+    D     K   + L L   + 
Sbjct: 44  -----AAHGQIA------------------VVEFLLQNGADPQLLGKGRESALSLACSKG 80

Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
              + ++LL                     G   N     G TPL  +    H     ML
Sbjct: 81  YTDIVKMLLDC-------------------GVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 457 LEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           LE GAD +     G+ ++ +A  LGY SV++ +
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.8 bits (154), Expect = 7e-12
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
            G T  L A    H+   ++ L ++  D      +G N++ LA   G+  V   + S   
Sbjct: 101 NGGTPLLYAVHGNHVK-CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159

Query: 62  NVDSATKK 69
            +    K+
Sbjct: 160 KLLQNIKE 167

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  141 bits (357), Expect = 1e-37
 Identities = 45/323 (13%), Positives = 89/323 (27%), Gaps = 58/323 (17%)

Query: 3   EGHTSFLRAARAGH---LDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSR 59
           +       AA  G    LD +   L ++  +    A    A  LA+++GHLHV+  L   
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150

Query: 60  GANVDSATK--KGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE 117
                 A    +   A  +A+                          + GH  V+  L E
Sbjct: 151 APTEIMAMIQAENYHAFRLAA--------------------------ENGHLHVLNRLCE 184

Query: 118 -------NDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
                     + ++ +     A+ +GH  V+  LL+          A     +  +    
Sbjct: 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY---AEIHEFEYGEKYVN 241

Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
             +      V+    +      +   G       +       GF  L       +E + +
Sbjct: 242 PFIA---RHVNRLKEMHDAFKLSNPDGVFDLVTKSE---CLQGFYMLRNLIRRNDEVLLD 295

Query: 231 IL--------LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP 282
            +        +   A            L +A  +G       LL   +   +        
Sbjct: 296 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL---TKANN 352

Query: 283 LHLAARANQTDIIRILLRNGAQV 305
            ++     + D+  + L +    
Sbjct: 353 YYINETGGRLDLRAVALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  117 bits (294), Expect = 5e-29
 Identities = 35/300 (11%), Positives = 77/300 (25%), Gaps = 38/300 (12%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
            L  + H   + S+       I           +LL     V            +A+  G
Sbjct: 80  QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139

Query: 258 CMNIVIYLLQNDANPDIPTVR--GETPLHLAARANQTDIIRILLRNGAQV---DARAREG 312
            ++++  L +      +  ++        LAA      ++  L            +A   
Sbjct: 140 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 199

Query: 313 HTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT 369
           +     A   G+ +V   L                 G   +              LK + 
Sbjct: 200 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV----NPFIARHVNRLKEMH 255

Query: 370 ETLIIAKGDG-------EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATT 422
           +   ++  DG        +   G   L    + +   + + +           +  ++  
Sbjct: 256 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI-----------RFLLSIP 304

Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS--------HAAKEGHTAL 474
            ++  A            L L+   G+    A+LL   + ++             G   L
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  116 bits (292), Expect = 8e-29
 Identities = 41/368 (11%), Positives = 99/368 (26%), Gaps = 71/368 (19%)

Query: 133 MQQGHDKVVAVLLE--NDTRGKVRLPALHIAA-KKDDTKAAKLLLEVSCTVDPASVLSST 189
           M   + + + + L    +     +L  L+ A   ++  +      +     +    +++ 
Sbjct: 42  MTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI 101

Query: 190 TGNAATGG-----YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
                +        L+ ++    V     +    +A+  G+  V N L +       +  
Sbjct: 102 --TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159

Query: 245 S--GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR--GETPLHLAARAN-QTDIIRILL 299
                    +A+  G ++++  L +         ++         AA      ++I  LL
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 219

Query: 300 RNGAQVD----------------------ARAREGHTALSIAQKLGYISVEESLGAAERS 337
                +                        R +E H A  ++   G   +          
Sbjct: 220 DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT-------- 271

Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG--DGEKHKNGLTPLHLCAQE 395
             K    +G   L    +     + + ++ +     I           +    L L  + 
Sbjct: 272 --KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 329

Query: 396 DRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
              G   LLL   + +                              +++ + G  D+ A+
Sbjct: 330 GNQGACALLLSIPSVLALTKA----------------------NNYYINETGGRLDLRAV 367

Query: 456 LLEHGADV 463
            LEH    
Sbjct: 368 ALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (253), Expect = 1e-23
 Identities = 37/275 (13%), Positives = 74/275 (26%), Gaps = 64/275 (23%)

Query: 1   SGEGHTSFLRAARAGHLDKIIEHL---KNNVDINTANANGLNALHLAS-KDGHLHVVTEL 56
             E + +F  AA  GHL  ++  L             A    A   A+   GH +V+  L
Sbjct: 160 QAENYHAFRLAAENGHLH-VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218

Query: 57  LSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLL 116
           L     +  A                   V     +  +    +  A +  +   V  L+
Sbjct: 219 LDCPVMLAYAEIHEFEYGEKY--------VNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 270

Query: 117 ENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
                   GF  L   +++  + ++  +                          + LL +
Sbjct: 271 TKSE-CLQGFYMLRNLIRRNDEVLLDDI--------------------------RFLLSI 303

Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
                                  IK               L +A   GN+G   +LL   
Sbjct: 304 P---------------------GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342

Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           + +  +        ++    G +++    L++  +
Sbjct: 343 SVLALTKA---NNYYINETGGRLDLRAVALEHHHH 374

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  134 bits (339), Expect = 8e-37
 Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 10/206 (4%)

Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ 267
           + +      L  A+    + V  IL D    V+     G TPL++A     + I   L+ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 268 NDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ-VDARAREGHTALSIAQKLGYIS 326
             A+ ++     ++P   A    +T+I+  +L++    ++   R G  AL  A + G+I 
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 327 VEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKH 382
             + L   G  +   +  +   G+TAL  A  L      +  + + + L+    D   K 
Sbjct: 121 NVKLLLEDGRED---IDFQNDFGYTALIEAVGLR--EGNQLYQDIVKLLMENGADQSIKD 175

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNN 408
            +G T +    Q+    ++++L + N
Sbjct: 176 NSGRTAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  129 bits (327), Expect = 5e-35
 Identities = 48/276 (17%), Positives = 82/276 (29%), Gaps = 90/276 (32%)

Query: 34  NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQ 93
                  L  A++     V   L      VD    +GNT L+IA                
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV--------------- 47

Query: 94  GDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDT 149
                           ++   L++     + +     +P   A  QG  +++A +L++  
Sbjct: 48  -----------HNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH-- 94

Query: 150 RGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT 209
                                                               N+HN    
Sbjct: 95  -----------------------------------------------ATPDLNKHN---- 103

Query: 210 SKSGFTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFM-----GCMNIVI 263
            + G   L  A+  G+     +LL+  R D++F    G T L  A  +        +IV 
Sbjct: 104 -RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162

Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
            L++N A+  I    G T +  A +   T+I +IL 
Sbjct: 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  122 bits (310), Expect = 1e-32
 Identities = 46/222 (20%), Positives = 81/222 (36%), Gaps = 37/222 (16%)

Query: 121 RGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
           +  +    L  A Q+   KV  +L +     D         L+IA   +D + AK L++ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
                           A           + ++ +    +P   A   G   +   +L   
Sbjct: 62  ---------------GA-----------DINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95

Query: 237 A-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAARANQ--- 291
             D+N   + G   L  A+  G ++ V  LL++   + D     G T L  A    +   
Sbjct: 96  TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155

Query: 292 --TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
              DI+++L+ NGA    +   G TA+  A + GY  + + L
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  120 bits (304), Expect = 8e-32
 Identities = 43/278 (15%), Positives = 79/278 (28%), Gaps = 92/278 (33%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           E       A +      + E L      ++  +  G   L++A  +  + +   L+ RGA
Sbjct: 5   EVGALLEAANQRDTKK-VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
           +++      ++    A                            QG  +++A +L++   
Sbjct: 64  DINLQNSISDSPYLYAG--------------------------AQGRTEILAYMLKHATP 97

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
             +   + G                                L  AA+K      KLLLE 
Sbjct: 98  DLNKHNRYGGNA-----------------------------LIPAAEKGHIDNVKLLLED 128

Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEG-----VANI 231
                         G             + D  +  G+T L  A            +  +
Sbjct: 129 --------------GRE-----------DIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163

Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
           L++  AD +    SG T +  A+  G   I   L Q +
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  118 bits (299), Expect = 3e-31
 Identities = 40/254 (15%), Positives = 80/254 (31%), Gaps = 68/254 (26%)

Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
                 L  A+      +   L       D     G TPL++A   N  +I + L+  GA
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
            ++ +     +    A                       G +G                 
Sbjct: 64  DINLQNSISDSPYLYA-----------------------GAQGR---------------- 84

Query: 364 SLKGVTETLIIAKGDG---EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA 420
               +   ++         + ++ G   L   A++  +   +LLL++             
Sbjct: 85  --TEILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR----------- 130

Query: 421 TTLLEYGAKPNAESVAGFTPLHLSA-----SEGHADMSAMLLEHGADVSHAAKEGHTALS 475
                     + ++  G+T L  +      ++ + D+  +L+E+GAD S     G TA+ 
Sbjct: 131 -------EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183

Query: 476 IAQKLGYISVEESL 489
            A + GY  + + L
Sbjct: 184 YANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 75.9 bits (188), Expect = 4e-16
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 22/132 (16%)

Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEY 426
           K       L    Q D   V E+L     QVD                  ++IA  L++ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTALSIAQKLGYISV 485
           GA  N ++    +P   + ++G  ++ A +L+H   D++   + G  AL  A + G+   
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH--- 118

Query: 486 EESLKGVTETLI 497
                   + L+
Sbjct: 119 ----IDNVKLLL 126

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  129 bits (327), Expect = 2e-34
 Identities = 53/301 (17%), Positives = 85/301 (28%), Gaps = 65/301 (21%)

Query: 202 NEHNPDVTSKSGFTPLHIASHYGNEGVANILLD-------KRADVNFS-AKSGLTPLHVA 253
            E  P          +  A    N      LL        +  D  F   ++G T L  A
Sbjct: 5   GEKPPR---LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 254 SF---MGCMNIVIYLLQNDANPDIPT-----------VRGETPLHLAARANQTDIIRILL 299
                 G  + +  LL      D               +G+T LH+A       ++ +L+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 300 RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI 359
            NGA V A A       +  +   Y                     G   LS+A     +
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFY--------------------FGELPLSLAACTNQL 161

Query: 360 SVEESLKGVTETLIIAKGDG-----EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP 414
           ++ + L        +           +   G T LH   +     V       +   +  
Sbjct: 162 AIVKFL--------LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI- 212

Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS----HAAKEG 470
             + +   L          +  G TPL L+AS G   + A +L+           AA   
Sbjct: 213 --LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270

Query: 471 H 471
           H
Sbjct: 271 H 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  128 bits (324), Expect = 6e-34
 Identities = 60/327 (18%), Positives = 97/327 (29%), Gaps = 101/327 (30%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT-SKSGFT 215
           ++  A  + + +  + LL                          K   + +    ++G T
Sbjct: 16  SIFDAVAQSNCQELESLLPF-------------------LQRSKKRLTDSEFKDPETGKT 56

Query: 216 PLHIAS---HYGNEGVANILLDKRADVNF-----------SAKSGLTPLHVASFMGCMNI 261
            L  A    H G      +LLD     +            S   G T LH+A     M +
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 262 VIYLLQNDAN--------------PDIPTVRGETPLHLAARANQTDIIRILLRNG---AQ 304
           V  L++N A+                     GE PL LAA  NQ  I++ LL+N    A 
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
           + AR   G+T L    ++   +V+                   T    +     + +   
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDN------------------TKFVTSMYNEILILGAK 218

Query: 365 LKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLL 424
           L    +   I       ++ GLTPL L A   ++GV   +L+                  
Sbjct: 219 LHPTLKLEEI------TNRKGLTPLALAASSGKIGVLAYILQREIH-------------- 258

Query: 425 EYGAKPNAESVAGFTPLHLSASEGHAD 451
                            H +A   H  
Sbjct: 259 ------------EPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  122 bits (308), Expect = 1e-31
 Identities = 49/279 (17%), Positives = 77/279 (27%), Gaps = 67/279 (24%)

Query: 11  AARAGHLDKIIEHLKNNVDIN-TANANGLNALHLAS---KDGHLHVVTELLSRGANVDSA 66
                 L  +    K   D        G   L  A     +G    +  LL      DS 
Sbjct: 27  QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86

Query: 67  TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-------- 118
            +  N +                      G T L +A+++ +  +V +L+EN        
Sbjct: 87  KQFVNASYTD---------------SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131

Query: 119 ----------DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----------DTRGKVRLPAL 158
                           G  PL++A       +V  LL+N          D+ G      L
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT---VL 188

Query: 159 HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLH 218
           H   +  D                  V S        G  L       ++T++ G TPL 
Sbjct: 189 HALVEVADNTVDNTKF----------VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238

Query: 219 IASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
           +A+  G  GV   +L +               H A+   
Sbjct: 239 LAASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  114 bits (287), Expect = 7e-29
 Identities = 55/318 (17%), Positives = 89/318 (27%), Gaps = 83/318 (26%)

Query: 29  DINTANANGLNALHLASKDGHLHVVTELL-------SRGANVD-SATKKGNTALHIASLG 80
                      ++  A    +   +  LL        R  + +    + G T L  A L 
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64

Query: 81  EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKV 140
                                     G +  +A+LL+   R  D               V
Sbjct: 65  L-----------------------HNGQNDTIALLLDVA-RKTDSLKQF----------V 90

Query: 141 VAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLI 200
            A   ++  +G+    ALHIA ++ +     LL+E       A V       AA  G   
Sbjct: 91  NASYTDSYYKGQT---ALHIAIERRNMTLVTLLVENG-----ADV------QAAANGDFF 136

Query: 201 KNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK---RADVNFSAKSGLTPLHVASFMG 257
           K           G  PL +A+      +   LL      AD++     G T LH    + 
Sbjct: 137 KK-TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195

Query: 258 CMNIVI----------------YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN 301
              +                   L       +I   +G TPL LAA + +  ++  +L+ 
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 302 GAQVDARAREGHTALSIA 319
                            A
Sbjct: 256 EIH-------EPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 95.2 bits (237), Expect = 4e-22
 Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 36/209 (17%)

Query: 27  NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPV 86
           N     +   G  ALH+A +  ++ +VT L+  GA+V +A             G +    
Sbjct: 91  NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY---- 146

Query: 87  WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKDGFTPLAVAMQQGHDK 139
                    G  PL++A       +V  LL+N         R   G T L   ++   + 
Sbjct: 147 --------FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNT 198

Query: 140 VVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLS--STTGNAATGG 197
           V                 + I   K         LE        + L+  +++G      
Sbjct: 199 VDNTKFVTSMYN-----EILILGAKLHPTLK---LEEITNRKGLTPLALAASSGKIGVLA 250

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNE 226
           Y+++ E              H A+H+ + 
Sbjct: 251 YILQRE-------IHEPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 83.7 bits (207), Expect = 3e-18
 Identities = 49/289 (16%), Positives = 81/289 (28%), Gaps = 74/289 (25%)

Query: 236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ-------NDANPDIP-TVRGETPLHLA- 286
            A            +  A        +  LL           + +      G+T L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 287 --ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGR 344
                 Q D I +LL    + D+                   +++ + A           
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDS-------------------LKQFVNA----SYTDSYY 99

Query: 345 EGHTALSIAQKLGYISVEESL--KGV------TETLIIAKGDGEKHKNGLTPLHLCAQED 396
           +G TAL IA +   +++   L   G                       G  PL L A  +
Sbjct: 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159

Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH------- 449
           ++ + + LL+N+ Q                 A  +A    G T LH              
Sbjct: 160 QLAIVKFLLQNSWQ----------------PADISARDSVGNTVLHALVEVADNTVDNTK 203

Query: 450 --ADMSAMLLEHGADVSHAA-------KEGHTALSIAQKLGYISVEESL 489
               M   +L  GA +           ++G T L++A   G I V   +
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 68.3 bits (167), Expect = 6e-13
 Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 31/179 (17%)

Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLI--IAKGDGEKHKNGLT 387
           S+ A E+   +   R    ++  A         ESL    +     +   + +  + G T
Sbjct: 1   SVSAGEKPP-RLYDR---RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKT 56

Query: 388 PLHLCAQEDRVG---VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
            L         G      LLL    + D+  +           A        G T LH++
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF--------VNASYTDSYYKGQTALHIA 108

Query: 445 ASEGHADMSAMLLEHGADVSHAAKE--------------GHTALSIAQKLGYISVEESL 489
               +  +  +L+E+GADV  AA                G   LS+A     +++ + L
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 7/73 (9%)

Query: 6   TSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDS 65
           T F+ +     L    +           N  GL  L LA+  G + V+  +L R  +   
Sbjct: 202 TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--- 258

Query: 66  ATKKGNTALHIAS 78
                    H A+
Sbjct: 259 ----EPECRHAAA 267

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  125 bits (318), Expect = 3e-34
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 26/175 (14%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            L  AAK  D +  K L  V                +           N         TP
Sbjct: 11  QLLEAAKAGDVETVKKLCTV---------------QSV----------NCRDIEGRQSTP 45

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH A+ Y    V   LL   ADV+   K GL PLH A   G   +   L+++ A  ++  
Sbjct: 46  LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           +   TPLH AA   + +I ++LL++GA    + R+G+T L + +  G   +++ L
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  108 bits (273), Expect = 6e-28
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 44/201 (21%)

Query: 211 KSGFTPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
                 L  A+  G+      L   +  +         TPLH A+    +++V YLLQ+ 
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
           A+       G  PLH A      ++  +L+++GA V+       T L  A          
Sbjct: 66  ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA---------- 115

Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTP 388
                          +G                     + + L+    D  +K+++G TP
Sbjct: 116 -------------AAKGK------------------YEICKLLLQHGADPTKKNRDGNTP 144

Query: 389 LHLCAQEDRVGVAELLLKNNA 409
           L L  ++    + +LL  + A
Sbjct: 145 LDL-VKDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  101 bits (254), Expect = 3e-25
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 29/165 (17%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL--KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
           E     L AA+AG ++  ++ L    +V+           LH A+    + VV  LL  G
Sbjct: 7   EADRQLLEAAKAGDVE-TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 61  ANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQ 106
           A+V +  K G   LH A         E LV       K G          FTPL  A  +
Sbjct: 66  ADVHAKDKGGLVPLHNACSYGHYEVAELLV-------KHGAVVNVADLWKFTPLHEAAAK 118

Query: 107 GHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
           G  ++  +LL++      + +DG TPL +  + G   +  +L  +
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 46/242 (19%), Positives = 69/242 (28%), Gaps = 87/242 (35%)

Query: 34  NANGLNALHLASKDGHLHVVTELLSR-GANVDSATKKGNTALHIASLGEFLVPVWLGDFK 92
           N+     L  A+K G +  V +L +    N      + +T LH A+              
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA-------------- 50

Query: 93  QGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEND 148
                             VV  LL++      + K G  P                    
Sbjct: 51  ------------GYNRVSVVEYLLQHGADVHAKDKGGLVP-------------------- 78

Query: 149 TRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDV 208
                    LH A      + A+L                          L+K+    +V
Sbjct: 79  ---------LHNACSYGHYEVAEL--------------------------LVKHGAVVNV 103

Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
                FTPLH A+  G   +  +LL   AD     + G TPL +    G  +I   L  +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162

Query: 269 DA 270
            A
Sbjct: 163 AA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 95.5 bits (239), Expect = 3e-23
 Identities = 46/213 (21%), Positives = 71/213 (33%), Gaps = 63/213 (29%)

Query: 279 GETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
            +  L  AA+A   + ++ L                T L  A                  
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA------------------ 49

Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQED 396
                                         V E L+    D   K K GL PLH      
Sbjct: 50  -----AGYNR------------------VSVVEYLLQHGADVHAKDKGGLVPLHNACSYG 86

Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
              VAELL+K+                   GA  N   +  FTPLH +A++G  ++  +L
Sbjct: 87  HYEVAELLVKH-------------------GAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

Query: 457 LEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           L+HGAD +   ++G+T L + +  G   +++ L
Sbjct: 128 LQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.1 bits (103), Expect = 4e-05
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
             T    AA  G  + I + L ++  D    N +G   L L    G   +   L    A
Sbjct: 108 KFTPLHEAAAKGKYE-ICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  124 bits (313), Expect = 2e-33
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVS 177
             +G     +  + GH               +  +        AA+K D +A   LLE  
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLLE-- 65

Query: 178 CTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
                         +            + D   ++G T L   +  G++    +L +  A
Sbjct: 66  --------------DR-----------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100

Query: 238 DVNF-SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
           D++    + GLT LH+A+      +V  L++  A+ ++   RG T L LA    +T    
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 160

Query: 297 ILLRNGAQVDA 307
             ++ G ++  
Sbjct: 161 NPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  112 bits (282), Expect = 4e-29
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 32/192 (16%)

Query: 141 VAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLI 200
           V  ++ + T G+  +    I  K   + +                               
Sbjct: 2   VNKIIGSRTAGEGAME-YLIEWKDGHSPSWVPSSY------------------------- 35

Query: 201 KNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMN 260
                 DV S+   TP   A+   +E   + LL +  DV+   ++G T L   + +G   
Sbjct: 36  ---IAADVVSE-YETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDK 90

Query: 261 IVIYLLQNDANPDIPTVR-GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            V  L +  A+ D   +R G T LH+AA   + +++  L+  GA ++     G TAL +A
Sbjct: 91  CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150

Query: 320 QKLGYISVEESL 331
           +++   + + + 
Sbjct: 151 REILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  108 bits (272), Expect = 1e-27
 Identities = 42/281 (14%), Positives = 71/281 (25%), Gaps = 109/281 (38%)

Query: 25  KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLV 84
            N +  +     G     +  KDGH           A+V     +  T    A+      
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAA------ 52

Query: 85  PVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---DTRGKDGFTPLAVAMQQGHDKVV 141
                               ++  ++ ++ LLE+   D   ++G T L            
Sbjct: 53  --------------------RKADEQALSQLLEDRDVDAVDENGRTAL------------ 80

Query: 142 AVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIK 201
                               A     K  +LL E                          
Sbjct: 81  -----------------LFVAGLGSDKCVRLLAE-------------------------- 97

Query: 202 NEHNPDV---TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
                D+     + G T LH+A+ Y    V   L++  AD+    + GLT L +A  +  
Sbjct: 98  --AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 155

Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
                                  P+    R     +I +L 
Sbjct: 156 TTPK-----------------GNPMQFGRRIGLEKVINVLE 179

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 99.9 bits (250), Expect = 1e-24
 Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 43/194 (22%)

Query: 1   SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
           +GEG   +L   + GH    +       D+    +        A++      +++LL   
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-D 66

Query: 61  ANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG---------DGFTPLAVAMQ 105
            +VD+  + G TAL   +          L        + G          G T L +A  
Sbjct: 67  RDVDAVDENGRTALLFVAGLGSDKCVRLLA-------EAGADLDHRDMRGGLTALHMAAG 119

Query: 106 QGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIA 161
               +VV  L+E     +   + G T L +A +          ++               
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF-------------G 166

Query: 162 AKKDDTKAAKLLLE 175
            +    K   +L  
Sbjct: 167 RRIGLEKVINVLEG 180

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.2 bits (230), Expect = 7e-22
 Identities = 33/212 (15%), Positives = 56/212 (26%), Gaps = 62/212 (29%)

Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
            G     +  +   +          A V +   E  T    A +         L      
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQL------ 63

Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR 397
                                      L+           D    +NG T L   A    
Sbjct: 64  ---------------------------LED-------RDVD-AVDENGRTALLFVAGLGS 88

Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
                LL +  A +D                        G T LH++A     ++   L+
Sbjct: 89  DKCVRLLAEAGADLDHRDMRG------------------GLTALHMAAGYVRPEVVEALV 130

Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           E GAD+    + G TAL +A+++   + + + 
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.4 bits (215), Expect = 6e-20
 Identities = 42/228 (18%), Positives = 62/228 (27%), Gaps = 52/228 (22%)

Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
            +   + +A  G     +    G     +      A+        ETP   AAR      
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQA 59

Query: 295 IRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ 354
           +  LL     VDA    G TAL     LG       L                       
Sbjct: 60  LSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL----------------------- 95

Query: 355 KLGYISVEESLKGVTETLIIAKG---DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQV 411
                                 G   D    + GLT LH+ A   R  V E L++  A +
Sbjct: 96  -------------------AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136

Query: 412 DTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
           +   + +   T LE   +    +  G  P+      G   +  +L   
Sbjct: 137 EV--EDERGLTALELAREILKTTPKG-NPMQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 72.9 bits (180), Expect = 3e-15
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANAN-GLNALHLASKDGHLHVVTELLSRG 60
            G T+ L  A  G     +  L +   D++  +   GL ALH+A+      VV  L+  G
Sbjct: 75  NGRTALLFVAGLGSDK-CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133

Query: 61  ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
           A+++   ++G TAL +A       P             P+    + G +KV+ VL   
Sbjct: 134 ADIEVEDERGLTALELAREILKTTPKGN----------PMQFGRRIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.1 bits (170), Expect = 8e-14
 Identities = 28/122 (22%), Positives = 38/122 (31%), Gaps = 13/122 (10%)

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD----TP-------TKMDIATTLLEYGA 428
                G     +  ++             A V     TP             + LLE   
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DR 67

Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA-AKEGHTALSIAQKLGYISVEE 487
             +A    G T L   A  G      +L E GAD+ H   + G TAL +A       V E
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 488 SL 489
           +L
Sbjct: 128 AL 129

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 3/59 (5%)

Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           +  +  G     +   +GH+          ADV     E  T    A +         L
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQL 63

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  122 bits (310), Expect = 3e-33
 Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 29/176 (16%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDV-TSKSGFT 215
            L  AA+       ++L+                             +     T   G +
Sbjct: 5   KLLEAARAGQDDEVRILMA----------------------------NGAPFTTDWLGTS 36

Query: 216 PLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIP 275
           PLH+A+ YG+     +LL      +   K   TPLH+A+  G  NIV  LL++ A+ +  
Sbjct: 37  PLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96

Query: 276 TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            +   T LH A   N  +++ +L++ GA V  +++   TA  I+   G   + E L
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  114 bits (287), Expect = 5e-30
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
               L  A+  G +    IL+   A    +   G +PLH+A+  G  +    LL+   + 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL- 331
           D  T    TPLH+AA     +I+ +LL++GA V+A+     TAL  A +  +  V E L 
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 332 --GAAERSQLKKRGREGHTALSIAQKLGYISVEESLK 366
             GA     +  + +   TA  I+   G   + E L+
Sbjct: 121 KYGA----DVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  102 bits (257), Expect = 7e-26
 Identities = 53/213 (24%), Positives = 77/213 (36%), Gaps = 62/213 (29%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
               L  AARA Q D +RIL+ NGA        G + L +A                   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPLHLA------------------- 41

Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
                + GH                     TE L+ A      + K   TPLH+ A E  
Sbjct: 42  ----AQYGH------------------FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79

Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
             + E+LLK+                   GA  NA+ +   T LH +    H ++  +L+
Sbjct: 80  ANIVEVLLKH-------------------GADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           ++GADV   +K   TA  I+   G   + E L+
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 99.8 bits (250), Expect = 6e-25
 Identities = 45/236 (19%), Positives = 71/236 (30%), Gaps = 90/236 (38%)

Query: 36  NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
           +    L  A++ G    V  L++ GA        G + LH+A+                 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAA----------------- 42

Query: 96  GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
                    Q GH     VLL      D R K   TP                       
Sbjct: 43  ---------QYGHFSTTEVLLRAGVSRDARTKVDRTP----------------------- 70

Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
                 LH+AA +      ++LL                            +H  DV +K
Sbjct: 71  ------LHMAASEGHANIVEVLL----------------------------KHGADVNAK 96

Query: 212 S--GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
                T LH A+ + ++ V  +L+   ADV+  +K   T   ++   G  ++   L
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 99.8 bits (250), Expect = 6e-25
 Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 28/161 (17%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           +     L AARAG  D  +  L  N       +  G + LHLA++ GH      LL  G 
Sbjct: 1   DLGKKLLEAARAGQDD-EVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 62  NVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQG 107
           + D+ TK   T LH+A+        E L+       K G           T L  A +  
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLL-------KHGADVNAKDMLKMTALHWATEHN 111

Query: 108 HDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVL 144
           H +VV +L++      T+ K   T   +++  G++ +  +L
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  122 bits (309), Expect = 4e-33
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 2/130 (1%)

Query: 203 EHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIV 262
           E     + +     L  A+  G       LL+  A+ N     G  P+ V   MG   + 
Sbjct: 2   EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVA 60

Query: 263 IYLLQNDANPDIPTVRGET-PLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
             LL + A P+       T P+H AAR    D + +L R GA++D R   G   + +A++
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120

Query: 322 LGYISVEESL 331
           LG+  V   L
Sbjct: 121 LGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  111 bits (281), Expect = 3e-29
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 34/165 (20%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            L  AA +   +  + LLE                             NP+  +  G  P
Sbjct: 15  WLATAAARGRVEEVRALLEAGA--------------------------NPNAPNSYGRRP 48

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLT-PLHVASFMGCMNIVIYLLQNDANPDIP 275
           + +    G+  VA +LL   A+ N +  + LT P+H A+  G ++ ++ L +  A  D+ 
Sbjct: 49  IQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR 107

Query: 276 TVRGETPLHLAARANQTDIIRILLRNGAQVDAR------AREGHT 314
              G  P+ LA      D+ R L                A EG +
Sbjct: 108 DAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 99.9 bits (250), Expect = 5e-25
 Identities = 35/221 (15%), Positives = 57/221 (25%), Gaps = 70/221 (31%)

Query: 233 LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT 292
           ++  A  +   +     L  A+  G +  V  LL+  ANP+ P   G  P+ +       
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 293 DIIRILLRNGAQVDARAREGHT-ALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALS 351
            +  +LL +GA+ +       T  +  A                        REG     
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDA-----------------------AREGF---- 90

Query: 352 IAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQ 410
                               L  A      +   G  P+ L  +     VA  L      
Sbjct: 91  --------------LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136

Query: 411 VDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
                                     G     + A+EG +D
Sbjct: 137 TR------------------------GSNHARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 97.5 bits (244), Expect = 4e-24
 Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 24  LKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG--- 80
           ++     +       + L  A+  G +  V  LL  GAN ++    G   + +  +G   
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR 58

Query: 81  --EFLVPVWLG---DFKQGDGFT-PLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLA 130
             E L+    G   +       T P+  A ++G    + VL       D R   G  P+ 
Sbjct: 59  VAELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116

Query: 131 VAMQQGHDKVVAVLLEN--DTRGKVRLPALHIAAKK 164
           +A + GH  V   L      TRG        I A +
Sbjct: 117 LAEELGHRDVARYLRAAAGGTRGSN---HARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.4 bits (241), Expect = 9e-24
 Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 71/215 (33%)

Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
           ++  A   +        L  AA   + + +R LL  GA  +A    G   + +       
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---- 54

Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE-KHKN 384
                               G                     V E L++   +       
Sbjct: 55  --------------------GSAR------------------VAELLLLHGAEPNCADPA 76

Query: 385 GLT-PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
            LT P+H  A+E  +    +L                      GA+ +     G  P+ L
Sbjct: 77  TLTRPVHDAAREGFLDTLVVLH-------------------RAGARLDVRDAWGRLPVDL 117

Query: 444 SASEGHADMSAMLLEHGADV------SHAAKEGHT 472
           +   GH D++  L                A EG +
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 90.2 bits (225), Expect = 2e-21
 Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 374 IAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK-------------MDIA 420
           +    G   +     L   A   RV     LL+  A  + P                 +A
Sbjct: 1   MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVA 60

Query: 421 TTLLEYGAKPNAESVAGFT-PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
             LL +GA+PN    A  T P+H +A EG  D   +L   GA +      G   + +A++
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120

Query: 480 LGYISVEESL 489
           LG+  V   L
Sbjct: 121 LGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 79.1 bits (196), Expect = 1e-17
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 31/141 (21%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGL-NALHLASKDGHLHVVTELLSRG 60
            G          G    + E L  +  + N A+   L   +H A+++G L  +  L   G
Sbjct: 44  YGRRPIQVMMM-GSAR-VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101

Query: 61  ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDT 120
           A +D     G   + +A                           + GH  V   L     
Sbjct: 102 ARLDVRDAWGRLPVDLAE--------------------------ELGHRDVARYLRAAAG 135

Query: 121 RGKDGFTPLAVAMQQGHDKVV 141
            G  G     +   +G   + 
Sbjct: 136 -GTRGSNHARIDAAEGPSDIP 155

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  123 bits (312), Expect = 5e-33
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 30/210 (14%)

Query: 123 KDGFTPLAVAMQQGHDKVVAVLL-ENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVD 181
           K+G     +  ++  ++ +  L    D+  +     L +A       A            
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRNYRDSYNRT---PLMVACMLGMENAID---------- 52

Query: 182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNF 241
                            L++N    +     G T L  A      G+A  LL K ++VN 
Sbjct: 53  ----------------KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96

Query: 242 SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN 301
              SG TPL  +   G   +  +LL++ AN +   + GETPL +A++  +++I++ LL  
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156

Query: 302 GAQVDARAREGHTALSIAQKLGYISVEESL 331
           GA + AR   G TA + A+  G   V +  
Sbjct: 157 GADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  119 bits (302), Expect = 1e-31
 Identities = 49/215 (22%), Positives = 78/215 (36%), Gaps = 32/215 (14%)

Query: 89  GDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEN- 147
           G     +G     +  ++  ++ +  L     R     TPL VA   G +  +  L+EN 
Sbjct: 1   GSHMDKNGEIVEKIKDEKSINQNLDFLRN--YRDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 148 ---DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEH 204
              + +      AL  A K +    A+                           L+    
Sbjct: 59  DKLEDKDIEGSTALIWAVKNNRLGIAE--------------------------KLLSKGS 92

Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
           N +    SG TPL  +  +G   ++  LL+  A+VN     G TPL VAS  G   IV  
Sbjct: 93  NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152

Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
           LL+  A+     + G T    A    + ++I+I  
Sbjct: 153 LLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  118 bits (298), Expect = 4e-31
 Identities = 45/253 (17%), Positives = 78/253 (30%), Gaps = 67/253 (26%)

Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
            K+G     I          + L + R           TPL VA  +G  N +  L++N 
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNYRD------SYNRTPLMVACMLGMENAIDKLVENF 58

Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
              +   + G T L  A + N+  I   LL  G+ V+ +   G T L  +   GY     
Sbjct: 59  DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY----- 113

Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTP 388
                                                 ++  L+    +  +++  G TP
Sbjct: 114 ------------------------------------SEMSYFLLEHGANVNDRNLEGETP 137

Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
           L + ++  R  + + LL                   E GA  +A  + G T    +   G
Sbjct: 138 LIVASKYGRSEIVKKLL-------------------ELGADISARDLTGLTAEASARIFG 178

Query: 449 HADMSAMLLEHGA 461
             ++  +  E   
Sbjct: 179 RQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  103 bits (259), Expect = 9e-26
 Identities = 48/247 (19%), Positives = 81/247 (32%), Gaps = 67/247 (27%)

Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           K+G     +         + +L  N  +         TPL +A      + I  L+ N  
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLR-NYRDSY-----NRTPLMVACMLGMENAIDKLVENFD 59

Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
           +++ +  EG TAL  A                        +                   
Sbjct: 60  KLEDKDIEGSTALIWA-----------------------VKNNR---------------- 80

Query: 364 SLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATT 422
              G+ E L+    +   K  +G TPL          ++  LL++               
Sbjct: 81  --LGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH--------------- 123

Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
               GA  N  ++ G TPL +++  G +++   LLE GAD+S     G TA + A+  G 
Sbjct: 124 ----GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179

Query: 483 ISVEESL 489
             V +  
Sbjct: 180 QEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  102 bits (257), Expect = 2e-25
 Identities = 38/250 (15%), Positives = 75/250 (30%), Gaps = 76/250 (30%)

Query: 1   SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
              G               +      +   N  ++     L +A   G  + + +L+   
Sbjct: 5   DKNGEIVEKIKDEKSINQNL------DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 61  ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
             ++    +G+TAL  A                           +     +   LL    
Sbjct: 59  DKLEDKDIEGSTALIWAV--------------------------KNNRLGIAEKLLSKGS 92

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKA 169
             +T+   G TPL  ++  G+ ++   LLE+       +  G+     L +A+K   ++ 
Sbjct: 93  NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE---TPLIVASKYGRSEI 149

Query: 170 AKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK--SGFTPLHIASHYGNEG 227
            K LLE                               D++++  +G T    A  +G + 
Sbjct: 150 VKKLLE----------------------------LGADISARDLTGLTAEASARIFGRQE 181

Query: 228 VANILLDKRA 237
           V  I  + R 
Sbjct: 182 VIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 66.6 bits (164), Expect = 6e-13
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 17/127 (13%)

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLL--KNNAQVDTP-------TKMDIATTLLEYGAKP 430
              KNG     +  ++      + L   +++    TP          +    L+E   K 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNYRDS-YNRTPLMVACMLGMENAIDKLVENFDKL 61

Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
             + + G T L  +       ++  LL  G++V+     G T L  +   GY        
Sbjct: 62  EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY-------S 114

Query: 491 GVTETLI 497
            ++  L+
Sbjct: 115 EMSYFLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  120 bits (305), Expect = 6e-33
 Identities = 48/120 (40%), Positives = 75/120 (62%)

Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +G TPLH+A+  G+  V  +LL+  ADVN   K+G TPLH+A+  G + +V  LL+  A+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            +     G TPLHLAAR    +++++LL  GA V+A+ + G T L +A + G++ V + L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  109 bits (275), Expect = 1e-28
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 26/147 (17%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            LH+AA+    +  KLLLE                             + +   K+G TP
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGA--------------------------DVNAKDKNGRTP 38

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH+A+  G+  V  +LL+  ADVN   K+G TPLH+A+  G + +V  LL+  A+ +   
Sbjct: 39  LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98

Query: 277 VRGETPLHLAARANQTDIIRILLRNGA 303
             G TPLHLAAR    +++++LL  GA
Sbjct: 99  KNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  100 bits (253), Expect = 1e-25
 Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 32/149 (21%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           G T    AAR GHL+ +++ L +   D+N  + NG   LHLA+++GHL VV  LL  GA+
Sbjct: 2   GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
           V++  K G T LH+A+                          + GH +VV +LLE     
Sbjct: 61  VNAKDKNGRTPLHLAA--------------------------RNGHLEVVKLLLEAGADV 94

Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
           + + K+G TPL +A + GH +VV +LLE 
Sbjct: 95  NAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 89.3 bits (223), Expect = 2e-21
 Identities = 58/184 (31%), Positives = 78/184 (42%), Gaps = 61/184 (33%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
           G TPLHLAAR    +++++LL  GA V+A+ + G T L +A                   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA------------------- 42

Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
                R GH                    V + L+ A  D   K KNG TPLHL A+   
Sbjct: 43  ----ARNGH------------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80

Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
           + V +LLL+                    GA  NA+   G TPLHL+A  GH ++  +LL
Sbjct: 81  LEVVKLLLEA-------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 458 EHGA 461
           E GA
Sbjct: 122 EAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 83.9 bits (209), Expect = 1e-19
 Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 14/120 (11%)

Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAK 429
           NG TPLHL A+   + V +LLL+  A V+   K              +++   LLE GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
            NA+   G TPLHL+A  GH ++  +LLE GADV+   K G T L +A + G++ V + L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.9 bits (196), Expect = 6e-18
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 34/151 (22%)

Query: 95  DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN--- 147
           +G TPL +A + GH +VV +LLE     + + K+G TPL +A + GH +VV +LLE    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 148 -DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNP 206
            + + K     LH+AA+    +  K                           L++   + 
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVK--------------------------LLLEAGADV 94

Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
           +   K+G TPLH+A+  G+  V  +LL+  A
Sbjct: 95  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.9 bits (196), Expect = 7e-18
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
            G T    AAR GHL+ +++ L +   D+N  + NG   LHLA+++GHL VV  LL  GA
Sbjct: 34  NGRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

Query: 62  NVDSATKKGNTALHIAS 78
           +V++  K G T LH+A+
Sbjct: 93  DVNAKDKNGRTPLHLAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 55.4 bits (135), Expect = 1e-09
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           G T    AAR GHL+ +++ L +   D+N  + NG   LHLA+++GHL VV  LL  GA
Sbjct: 68  GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  124 bits (313), Expect = 7e-33
 Identities = 46/213 (21%), Positives = 73/213 (34%), Gaps = 22/213 (10%)

Query: 198 YLIKNEHNPDVTSKSGFTP---LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVAS 254
            +++   +P    ++   P   L  A+  G   V    + +  D +   + G+T LH A 
Sbjct: 3   SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62

Query: 255 FMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDAR-AREGH 313
                +IV +L+   AN + P   G TPLH AA  N T I   L+++GA + A    +G 
Sbjct: 63  CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122

Query: 314 TALSIAQKL--GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTET 371
           TA         GY        A     +         AL             S +   E 
Sbjct: 123 TAFEKCDPYREGYADCAT-YLADVEQSMGLMNSGAVYALWDY----------SAEFGDEL 171

Query: 372 LIIAKGDG----EKHKNGLTPLHLCAQEDRVGV 400
               +G+      +     T     A   + G 
Sbjct: 172 SFR-EGESVTVLRRDGPEETDWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  113 bits (285), Expect = 6e-29
 Identities = 45/298 (15%), Positives = 71/298 (23%), Gaps = 91/298 (30%)

Query: 24  LKNNVDINTAN---ANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG 80
           L+       A     N L  L  A+  G L VV + +    +     ++G TALH A   
Sbjct: 5   LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI-- 62

Query: 81  EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQG 136
                                      +  +V  L+      ++    G+TPL       
Sbjct: 63  ------------------------CGANYSIVDFLITAGANVNSPDSHGWTPL------- 91

Query: 137 HDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATG 196
                                 H AA  +DT     L++    +                
Sbjct: 92  ----------------------HCAASCNDTVICMALVQHGAAIF--------------- 114

Query: 197 GYLIKNEHNPDVTSKSGFTPLHIASHY--GNEGVANILLDKRADVNFSAKSGLTPLHVAS 254
                       T   G T       Y  G    A  L D    +       +  L   S
Sbjct: 115 ----------ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164

Query: 255 FMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII-RILLRNGAQVDARARE 311
                + + +               ET    AA   Q   + R       +V  +  +
Sbjct: 165 -AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSK 221

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  111 bits (279), Expect = 4e-28
 Identities = 44/263 (16%), Positives = 72/263 (27%), Gaps = 71/263 (26%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
                L AA  G L+ +++   K   D +  N  G+ ALH A    +  +V  L++ GAN
Sbjct: 21  PLVLLLDAALTGELE-VVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN 79

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE----- 117
           V+S    G T LH A+                                +   L++     
Sbjct: 80  VNSPDSHGWTPLHCAA--------------------------SCNDTVICMALVQHGAAI 113

Query: 118 NDTRGKDGFTPL--AVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAK 171
             T   DG T        ++G+      L +            + AL   + +       
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF------ 167

Query: 172 LLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK--SGFTPLHIASHYGNEG-V 228
              E+                        +   +  V  +     T    A+ +G EG V
Sbjct: 168 -GDEL----------------------SFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

Query: 229 ANILLDKRADVNFSAKSGLTPLH 251
                     V           H
Sbjct: 205 PRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 33/224 (14%), Positives = 60/224 (26%), Gaps = 65/224 (29%)

Query: 262 VIYLLQNDANPDIPT---VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
           +  +L+   +P       +     L  AA   + ++++  ++          EG TAL  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 319 AQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD 378
           A                           +                    + + LI A  +
Sbjct: 61  A-----------------------ICGAN------------------YSIVDFLITAGAN 79

Query: 379 -GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAG 437
                 +G TPLH  A  +   +   L+++ A +   T  D                  G
Sbjct: 80  VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD------------------G 121

Query: 438 FTPLHL--SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
            T         EG+AD +  L +    +         AL     
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA 165

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 19/110 (17%)

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
               N L  L   A    + V +  +K                       P+  +  G T
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVKE-------------------MNDPSQPNEEGIT 56

Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
            LH +    +  +   L+  GA+V+     G T L  A       +  +L
Sbjct: 57  ALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 20/124 (16%), Positives = 31/124 (25%), Gaps = 11/124 (8%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANAN-GLNALHLAS--KDGHLHVVTELLS 58
            G T    AA       I   L ++   I     + G  A       ++G+    T L  
Sbjct: 86  HGWTPLHCAASCNDTV-ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144

Query: 59  RGANVDSATKKGNTALHIASLGEFLVPVWL------GDFKQGDGFTPLAVAMQQGHDKVV 112
              ++         AL   S        +          + G   T    A   G +  V
Sbjct: 145 VEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

Query: 113 AVLL 116
               
Sbjct: 205 PRNY 208

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  122 bits (308), Expect = 7e-33
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 26/175 (14%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            L  AA+       +                           L+ N  + +    SG+TP
Sbjct: 17  KLLEAARAGRDDEVR--------------------------ILMANGADVNAEDASGWTP 50

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH+A+  G+  +  +LL   ADVN    +G+TPL +A+  G + IV  LL+N A+ +   
Sbjct: 51  LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           + G TPLHLAA     +I+ +LL+NGA V+A+ + G TA  I+   G   + E L
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  121 bits (306), Expect = 2e-32
 Identities = 60/210 (28%), Positives = 82/210 (39%), Gaps = 47/210 (22%)

Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
             + H  D         L  A+  G +    IL+   ADVN    SG TPLH+A+F G +
Sbjct: 6   HHHHHGSD-----LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHL 60

Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            IV  LL+N A+ +     G TPL LAA     +I+ +LL+NGA V+A   EGHT L +A
Sbjct: 61  EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120

Query: 320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD- 378
                                     GH                    + E L+    D 
Sbjct: 121 -----------------------AMFGH------------------LEIVEVLLKNGADV 139

Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNN 408
             + K G T   +        +AE+L K N
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  115 bits (290), Expect = 3e-30
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 30/186 (16%)

Query: 118 NDTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
           +   G D    L  A + G D  V +L+ N    +         LH+AA     +  +  
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE-- 64

Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
                                    L+KN  + +    +G TPL +A+ +G+  +  +LL
Sbjct: 65  ------------------------VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL 100

Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD 293
              ADVN +   G TPLH+A+  G + IV  LL+N A+ +     G+T   ++      D
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160

Query: 294 IIRILL 299
           +  IL 
Sbjct: 161 LAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  114 bits (289), Expect = 4e-30
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 27/164 (16%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
                L AARAG  D  +  L  N  D+N  +A+G   LHLA+ +GHL +V  LL  GA+
Sbjct: 14  LGKKLLEAARAGRDD-EVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 63  VDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQGH 108
           V++    G T L +A+L       E L+       K G        +G TPL +A   GH
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLL-------KNGADVNANDMEGHTPLHLAAMFGH 125

Query: 109 DKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEND 148
            ++V VLL+N    + + K G T   +++  G++ +  +L + +
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  113 bits (287), Expect = 8e-30
 Identities = 47/246 (19%), Positives = 82/246 (33%), Gaps = 86/246 (34%)

Query: 29  DINTAN-ANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVW 87
             +  + ++    L  A++ G    V  L++ GA+V++    G T LH+A+         
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAA--------- 55

Query: 88  LGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAV 143
                              GH ++V VLL+N    +     G TPL              
Sbjct: 56  -----------------FNGHLEIVEVLLKNGADVNAVDHAGMTPL-------------- 84

Query: 144 LLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNE 203
                           +AA     +  +                           L+KN 
Sbjct: 85  ---------------RLAALFGHLEIVE--------------------------VLLKNG 103

Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI 263
            + +     G TPLH+A+ +G+  +  +LL   ADVN   K G T   ++   G  ++  
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163

Query: 264 YLLQND 269
            L + +
Sbjct: 164 ILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  105 bits (265), Expect = 8e-27
 Identities = 55/232 (23%), Positives = 82/232 (35%), Gaps = 68/232 (29%)

Query: 229 ANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAAR 288
           ++      +D+          L  A+  G  + V  L+ N A+ +     G TPLHLAA 
Sbjct: 4   SHHHHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF 56

Query: 289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHT 348
               +I+ +LL+NGA V+A    G T L +A                          GH 
Sbjct: 57  NGHLEIVEVLLKNGADVNAVDHAGMTPLRLA-----------------------ALFGH- 92

Query: 349 ALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKN 407
                              + E L+    D       G TPLHL A    + + E+LLKN
Sbjct: 93  -----------------LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

Query: 408 NAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
                              GA  NA+   G T   +S   G+ D++ +L + 
Sbjct: 136 -------------------GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  105 bits (264), Expect = 1e-26
 Identities = 61/212 (28%), Positives = 82/212 (38%), Gaps = 61/212 (28%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
               L  AARA + D +RIL+ NGA V+A    G T L +A                   
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA------------------- 54

Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
                  GH                    + E L+    D       G+TPL L A    
Sbjct: 55  ----AFNGH------------------LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92

Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
           + + E+LLKN                   GA  NA  + G TPLHL+A  GH ++  +LL
Sbjct: 93  LEIVEVLLKN-------------------GADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133

Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           ++GADV+   K G TA  I+   G   + E L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  120 bits (303), Expect = 9e-33
 Identities = 42/110 (38%), Positives = 57/110 (51%)

Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
              SK G TPLH A+  G+      LL K ADVN  +K G TPLH+A+  G   IV  LL
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
              A+ +  +  G TP HLA +    +I+++L   GA V+AR+       
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 90.5 bits (226), Expect = 4e-22
 Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 26/128 (20%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            LH AAK    +  K                           L+    + +  SK G TP
Sbjct: 12  PLHNAAKNGHAEEVK--------------------------KLLSKGADVNARSKDGNTP 45

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH+A+  G+  +  +LL K ADVN  +K G TP H+A   G   IV  L    A+ +  +
Sbjct: 46  LHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

Query: 277 VRGETPLH 284
                  H
Sbjct: 106 WGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 83.2 bits (207), Expect = 2e-19
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 32/132 (24%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           +G+T    AA+ GH +  ++ L     D+N  + +G   LHLA+K+GH  +V  LL++GA
Sbjct: 8   DGNTPLHNAAKNGHAE-EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
           +V++ +K GNT  H+A                           + GH ++V +L      
Sbjct: 67  DVNARSKDGNTPEHLAK--------------------------KNGHHEIVKLLDAKGAD 100

Query: 119 -DTRGKDGFTPL 129
            + R        
Sbjct: 101 VNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
                 +K G TPLH A+  G    V  LL   A+ +  +  G TPLHLAA+    +I++
Sbjct: 2   HMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59

Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTAL 350
           +LL  GA V+AR+++G+T   +A+K G+  + + L   GA     +  R        
Sbjct: 60  LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA----DVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.8 bits (193), Expect = 1e-17
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 14/106 (13%)

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGA 428
           K+G TPLH  A+       + LL   A V+  +K               +I   LL  GA
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
             NA S  G TP HL+   GH ++  +L   GADV+  +       
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.1 bits (173), Expect = 7e-15
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           G+T    AA+ GH + I++ L     D+N  + +G    HLA K+GH  +V  L ++GA+
Sbjct: 42  GNTPLHLAAKNGHAE-IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

Query: 63  VDSATKKGNTALH 75
           V++ +   +   H
Sbjct: 101 VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 68.2 bits (168), Expect = 3e-14
 Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 61/165 (36%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
           G TPLH AA+    + ++ LL  GA V+AR+++G+T L +A                   
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA------------------- 49

Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
                + GH                    + + L+    D   + K+G TP HL  +   
Sbjct: 50  ----AKNGH------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87

Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
             + +LL                      GA  NA S       H
Sbjct: 88  HEIVKLLDAK-------------------GADVNARSWGSSHHHH 113

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  121 bits (307), Expect = 9e-33
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 45/196 (22%)

Query: 213 GFTPLHIASHYGN-EGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
               L  A+  G+ + V  +L  +    +   + G T L V  F G   I + LL+  A+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           P++    G +P+H AAR    D +++L+ +GA V+     G   + +A            
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA------------ 108

Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLH 390
                       +EGH                    V    + A+ D   +   GLTPL 
Sbjct: 109 -----------VQEGH------------------TAVVS-FLAAESDLHRRDARGLTPLE 138

Query: 391 LCAQEDRVGVAELLLK 406
           L  Q     + ++L  
Sbjct: 139 LALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  120 bits (305), Expect = 2e-32
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            L  AA + D +  + LL                          +   +PD  ++ G T 
Sbjct: 5   RLSGAAARGDVQEVRRLL-------------------------HRELVHPDALNRFGKTA 39

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           L +   +G+  +A  LL + A  N    SG +P+H A+  G ++ +  L+++ A+ ++P 
Sbjct: 40  LQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
             G  P+HLA +   T ++  L    + +  R   G T L +A + G   + + L
Sbjct: 99  GTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  112 bits (282), Expect = 3e-29
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 26/161 (16%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
                  AA  G + ++   L +  V  +  N  G  AL +    G   +  ELL +GA+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 63  VDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQGH 108
            +     G + +H A+        + LV       + G         G  P+ +A+Q+GH
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLV-------EHGADVNVPDGTGALPIHLAVQEGH 113

Query: 109 DKVVAVLLEN---DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
             VV+ L        R   G TPL +A+Q+G   +V +L  
Sbjct: 114 TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  104 bits (261), Expect = 2e-26
 Identities = 39/235 (16%), Positives = 69/235 (29%), Gaps = 88/235 (37%)

Query: 37  GLNALHLASKDGHLHVVTELL-SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
             + L  A+  G +  V  LL     + D+  + G TAL +                   
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM----------------- 44

Query: 96  GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
                      G   +   LL+     + +   G +P+                      
Sbjct: 45  ----------FGSTAIALELLKQGASPNVQDTSGTSPV---------------------- 72

Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
                  H AA+       K                           L+++  + +V   
Sbjct: 73  -------HDAARTGFLDTLK--------------------------VLVEHGADVNVPDG 99

Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           +G  P+H+A   G+  V + L    +D++     GLTPL +A   G  ++V  L 
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  104 bits (261), Expect = 2e-26
 Identities = 43/214 (20%), Positives = 67/214 (31%), Gaps = 64/214 (29%)

Query: 278 RGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAER 336
           R    L  AA       +R LL R     DA  R G TAL +                  
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM---------------- 44

Query: 337 SQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQE 395
                    G TA                  +   L+        +  +G +P+H  A+ 
Sbjct: 45  --------FGSTA------------------IALELLKQGASPNVQDTSGTSPVHDAART 78

Query: 396 DRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
             +   ++L+                   E+GA  N     G  P+HL+  EGH  + + 
Sbjct: 79  GFLDTLKVLV-------------------EHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           L    +D+      G T L +A + G   + + L
Sbjct: 120 LAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  100 bits (253), Expect = 2e-25
 Identities = 40/216 (18%), Positives = 59/216 (27%), Gaps = 64/216 (29%)

Query: 246 GLTPLHVASFMGCMNIVIYLL-QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
               L  A+  G +  V  LL +   +PD     G+T L +      T I   LL+ GA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
            + +   G + +  A                        R G                  
Sbjct: 61  PNVQDTSGTSPVHDA-----------------------ARTGF----------------- 80

Query: 365 LKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTL 423
                + L+    D       G  P+HL  QE    V   L                   
Sbjct: 81  -LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA----------------- 122

Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
               +  +     G TPL L+   G  D+  +L  H
Sbjct: 123 ---ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  119 bits (300), Expect = 4e-32
 Identities = 39/123 (31%), Positives = 57/123 (46%)

Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
           T+  G T LHIAS  G+      LL   +D N    +G TPLH A   G + +V  LLQ+
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
            A  +    + ++PLH AA+    DI+++LL  GA  +A    G   +         S+ 
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125

Query: 329 ESL 331
              
Sbjct: 126 LLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  116 bits (294), Expect = 3e-31
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 26/147 (17%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            LHIA+ K D  + +                          YL++N  +P+V   +G+TP
Sbjct: 13  LLHIASIKGDIPSVE--------------------------YLLQNGSDPNVKDHAGWTP 46

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH A ++G+  V  +LL  +A VN +     +PLH A+  G ++IV  LL   A+ +   
Sbjct: 47  LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

Query: 277 VRGETPLHLAARANQTDIIRILLRNGA 303
           + G  P+      +   ++ +  +N +
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  101 bits (254), Expect = 1e-25
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 26/139 (18%)

Query: 28  VDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG------E 81
           +D  T N  G   LH+AS  G +  V  LL  G++ +     G T LH A         E
Sbjct: 2   IDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 82  FLVPVWLGDFKQG--------DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPL 129
            L+       +             +PL  A + GH  +V +LL      +     G  P+
Sbjct: 61  LLL-------QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

Query: 130 AVAMQQGHDKVVAVLLEND 148
                +    ++ +  +N+
Sbjct: 114 DYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 90.2 bits (225), Expect = 8e-22
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 30/153 (19%)

Query: 123 KDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSC 178
             G T L +A  +G    V  LL+N    + +       LH A      K  +       
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE------- 60

Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
                               L++++   + T     +PLH A+  G+  +  +LL   A 
Sbjct: 61  -------------------LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
            N     GL P+         ++++   +N+++
Sbjct: 102 RNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 89.8 bits (224), Expect = 1e-21
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 14/126 (11%)

Query: 378 DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKM--------------DIATTL 423
           D   +  G T LH+ + +  +   E LL+N +  +                    +   L
Sbjct: 3   DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYI 483
           L++ A  N       +PLH +A  GH D+  +LL +GA  +     G   +         
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122

Query: 484 SVEESL 489
           S+    
Sbjct: 123 SLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 85.6 bits (213), Expect = 4e-20
 Identities = 40/188 (21%), Positives = 58/188 (30%), Gaps = 62/188 (32%)

Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
           RGET LH+A+       +  LL+NG+  + +   G T L  A                  
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA------------------ 50

Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQED 396
                   GH                    V E L+  K           +PLH  A+  
Sbjct: 51  -----CNHGH------------------LKVVELLLQHKALVNTTGYQNDSPLHDAAKNG 87

Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
            V + +LLL                    YGA  NA ++ G  P+  +  E    +  +L
Sbjct: 88  HVDIVKLLL-------------------SYGASRNAVNIFGLRPVDYTDDESMKSL-LLL 127

Query: 457 LEHGADVS 464
            E     S
Sbjct: 128 PEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 76.7 bits (190), Expect = 6e-17
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           G T    A   GHL  ++E L ++   +NT      + LH A+K+GH+ +V  LLS GA+
Sbjct: 43  GWTPLHEACNHGHLK-VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

Query: 63  VDSATKKGNTALHIAS 78
            ++    G   +    
Sbjct: 102 RNAVNIFGLRPVDYTD 117

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           +  +    AA+ GH+D I++ L       N  N  GL  +     +    ++  L  +  
Sbjct: 75  QNDSPLHDAAKNGHVD-IVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL-LLPEKNE 132

Query: 62  NVDSA 66
           +  ++
Sbjct: 133 SSSAS 137

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  120 bits (303), Expect = 3e-31
 Identities = 54/296 (18%), Positives = 87/296 (29%), Gaps = 77/296 (26%)

Query: 39  NALHLASKDGHLHVVTELL--------SRGANVDSATKKGNTALHIASLGEFLVPVWLGD 90
           + L      G    +T LL            +  +    G T L  A             
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA------------- 50

Query: 91  FKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTR 150
                      + +Q G +  +  LL+                      V A   +   +
Sbjct: 51  ----------VLNLQDGVNACIMPLLQI-----------DKDSGNPKPLVNAQCTDEFYQ 89

Query: 151 GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS 210
           G     ALHIA +K   +  KLL+E    V           +    G   +   +     
Sbjct: 90  GHS---ALHIAIEKRSLQCVKLLVENGADV-----------HLRACGRFFQ--KHQGTCF 133

Query: 211 KSGFTPLHIASHYGNEGVANILLDK---RADVNFSAKSGLTPLH---------------- 251
             G  PL +A+      V   LL+     A +  +   G T LH                
Sbjct: 134 YFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALV 193

Query: 252 VASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
           +  + G + +   L       +I   +G TPL LAA+  + +I R +L+      A
Sbjct: 194 IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  116 bits (292), Expect = 1e-29
 Identities = 55/346 (15%), Positives = 85/346 (24%), Gaps = 124/346 (35%)

Query: 156 PALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFT 215
             L     +   +    LLE                      YL  + +       +G T
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLR---------------WNSKYLTDSAYTEG---STGKT 45

Query: 216 PLHIA---SHYGNEGVANILLDKR-----------ADVNFSAKSGLTPLHVASFMGCMNI 261
            L  A      G       LL              A        G + LH+A     +  
Sbjct: 46  CLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQC 105

Query: 262 VIYLLQNDANPDI-------------PTVRGETPLHLAARANQTDIIRILLRNG---AQV 305
           V  L++N A+  +                 GE PL LAA   Q D++  LL N    A +
Sbjct: 106 VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165

Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL 365
           +A    G+T L                              H  + IA            
Sbjct: 166 EATDSLGNTVL------------------------------HALVMIADN---------- 185

Query: 366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLE 425
                                + L +   +  + +   L       +             
Sbjct: 186 -----------------SPENSALVIHMYDGLLQMGARLCPTVQLEEISNH--------- 219

Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471
                      G TPL L+A EG  ++   +L+     + A    H
Sbjct: 220 ----------QGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 89.5 bits (222), Expect = 3e-20
 Identities = 48/261 (18%), Positives = 76/261 (29%), Gaps = 43/261 (16%)

Query: 248 TPLHVASFMGCMNIVIYLLQ--------NDANPDIPTVRGETPLHLAA---RANQTDIIR 296
             L      G    +  LL+           +       G+T L  A    +      I 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKL 356
            LL+                           +  + A    Q      +GH+AL IA + 
Sbjct: 64  PLLQIDKDSGN-------------------PKPLVNA----QCTDEFYQGHSALHIAIEK 100

Query: 357 GYISVEESL--KG-----VTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNA 409
             +   + L   G             K  G     G  PL L A   +  V   LL+N  
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160

Query: 410 QV-DTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAK 468
           Q         +  T+L +     A++    + L +   +G   M A L         +  
Sbjct: 161 QPASLEATDSLGNTVL-HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219

Query: 469 EGHTALSIAQKLGYISVEESL 489
           +G T L +A K G I +   +
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 13/69 (18%), Positives = 26/69 (37%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
             +++ +     G L               +N  GL  L LA+K+G + +   +L R  +
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246

Query: 63  VDSATKKGN 71
             +A    +
Sbjct: 247 GAAAHHHHH 255

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  116 bits (292), Expect = 5e-31
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI 263
               +   S    L  A+  G       LL+  AD N   + G  P+ V   MG   +  
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAE 61

Query: 264 YLLQNDANPDIPTVRGET-PLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKL 322
            LL + A P+       T P+H AAR    D + +L R GA++D     G   + +A++ 
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121

Query: 323 GYISVEESL 331
           G+  +   L
Sbjct: 122 GHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  103 bits (260), Expect = 1e-26
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 25/137 (18%)

Query: 29  DINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG-----EFL 83
            I+    +    L  A+  G +  V +LL  GA+ ++  + G   + +  +G     E L
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELL 63

Query: 84  VPVWLGDFKQG--------DGFT-PLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLA 130
           +         G           T P+  A ++G    + VL       D     G  P+ 
Sbjct: 64  L-------LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVD 116

Query: 131 VAMQQGHDKVVAVLLEN 147
           +A +QGH  +   L   
Sbjct: 117 LAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  102 bits (257), Expect = 4e-26
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLT-PLHVASFM 256
            L++   +P+  ++ G  P+ +    G+  VA +LL   A+ N +  + LT P+H A+  
Sbjct: 30  QLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAARE 88

Query: 257 GCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
           G ++ ++ L +  A  D+    G  P+ LA      DI R L     
Sbjct: 89  GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 93.3 bits (233), Expect = 7e-23
 Identities = 27/175 (15%), Positives = 46/175 (26%), Gaps = 44/175 (25%)

Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
             ++    S    L  A+  G +  V  LL+  A+P+     G  P+ +        +  
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAE 61

Query: 297 ILLRNGAQVDARAREGHT-ALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
           +LL +GA+ +       T  +  A                        REG         
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDA-----------------------AREGF-------- 90

Query: 356 LGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNA 409
                           L  A          G  P+ L  ++    +A  L     
Sbjct: 91  ----------LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.9 bits (232), Expect = 1e-22
 Identities = 33/195 (16%), Positives = 55/195 (28%), Gaps = 63/195 (32%)

Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
               +     +  L  AA   Q + +R LL  GA  +A  R G   + +           
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-------- 54

Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLT- 387
                           G                     V E L++   +        LT 
Sbjct: 55  ----------------GSAQ------------------VAELLLLHGAEPNCADPATLTR 80

Query: 388 PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE 447
           P+H  A+E  +    +L +                    GA+ +     G  P+ L+  +
Sbjct: 81  PVHDAAREGFLDTLVVLHRA-------------------GARLDVCDAWGRLPVDLAEEQ 121

Query: 448 GHADMSAMLLEHGAD 462
           GH D++  L     D
Sbjct: 122 GHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 91.0 bits (227), Expect = 5e-22
 Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 32/158 (20%)

Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLL 174
              G      LA A  +G  + V  LLE     +   +     + +              
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM----------- 54

Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFT-PLHIASHYGNEGVANILL 233
                           G+A     L+ +   P+    +  T P+H A+  G      +L 
Sbjct: 55  ----------------GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98

Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
              A ++     G  P+ +A   G  +I  YL     +
Sbjct: 99  RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.8 bits (211), Expect = 7e-20
 Identities = 31/190 (16%), Positives = 50/190 (26%), Gaps = 66/190 (34%)

Query: 60  GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN- 118
              +       +  L  A+                           +G  + V  LLE  
Sbjct: 2   SPGIHMLGGSSDAGLATAA--------------------------ARGQVETVRQLLEAG 35

Query: 119 ---DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTK 168
              +   + G  P+ V M  G  +V  +LL +       D         +H AA++    
Sbjct: 36  ADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLT--RPVHDAARE---- 88

Query: 169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV 228
                                 G   T   L +     DV    G  P+ +A   G+  +
Sbjct: 89  ----------------------GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126

Query: 229 ANILLDKRAD 238
           A  L     D
Sbjct: 127 ARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
               +    +    L  +A+ G  +    LLE GAD +   + G   + + 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM 52

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.9 bits (136), Expect = 8e-10
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 3   EGHTSFL-RAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
              T  +  AAR G LD  +  L +    ++  +A G   + LA + GH  +   L +  
Sbjct: 76  ATLTRPVHDAAREGFLD-TLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

Query: 61  AN 62
            +
Sbjct: 135 GD 136

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  115 bits (292), Expect = 1e-30
 Identities = 48/203 (23%), Positives = 65/203 (32%), Gaps = 46/203 (22%)

Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
           ++     L  A+  G+      LL    +VN     G T L V    G   I   LL   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60

Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
           ANPD+    G   +H AARA   D ++ LL   A V+    EG+  L +A          
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA---------- 110

Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG---EKHKNGL 386
                         +EGH                    V E L +         ++  G 
Sbjct: 111 -------------AKEGH------------------LRVVEFL-VKHTASNVGHRNHKGD 138

Query: 387 TPLHLCAQEDRVGVAELLLKNNA 409
           T   L     R  V  L+  N A
Sbjct: 139 TACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  114 bits (287), Expect = 7e-30
 Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 31/182 (17%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            L  AA + D +                              L++N  N +  +  G T 
Sbjct: 8   ELASAAARGDLEQLT--------------------------SLLQNNVNVNAQNGFGRTA 41

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           L +    GN  +A  LL + A+ +   ++G   +H A+  G ++ +  LL+  A+ +I  
Sbjct: 42  LQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQ-VDARAREGHTALSIAQKLGYISVEESL---G 332
             G  PLHLAA+     ++  L+++ A  V  R  +G TA  +A+  G   V   +   G
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

Query: 333 AA 334
           A 
Sbjct: 161 AG 162

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  102 bits (258), Expect = 7e-26
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 29/165 (17%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
                   AA  G L+  +  L +NNV++N  N  G  AL +    G+  +   LL RGA
Sbjct: 4   PWGNELASAAARGDLE-QLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61

Query: 62  NVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQG 107
           N D   + G   +H A+        + L+       +          +G  PL +A ++G
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLL-------EFQADVNIEDNEGNLPLHLAAKEG 114

Query: 108 HDKVVAVLLEN-----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
           H +VV  L+++       R   G T   +A   G ++VV+++  N
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  102 bits (256), Expect = 1e-25
 Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 60/210 (28%)

Query: 36  NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
              N L  A+  G L  +T LL    NV++    G TAL +                   
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK----------------- 46

Query: 96  GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN---- 147
                      G+ ++   LL      D + + GF  +  A + G    +  LLE     
Sbjct: 47  ----------LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96

Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
           +         LH+AAK+   +  + L++                             N  
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVK-------------------------HTASNVG 131

Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRA 237
             +  G T   +A  YG   V +++    A
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  100 bits (252), Expect = 4e-25
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 34/188 (18%)

Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAA 334
                L  AA     + +  LL+N   V+A+   G TAL + +  G   +   L   GA 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA- 61

Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCA 393
                  + R G   +  A + G+           +TL+  + D   +   G  PLHL A
Sbjct: 62  ---NPDLKDRTGFAVIHDAARAGF-------LDTLQTLLEFQADVNIEDNEGNLPLHLAA 111

Query: 394 QEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
           +E  + V E L+K+ A        ++              +  G T   L+   G  ++ 
Sbjct: 112 KEGHLRVVEFLVKHTAS-------NV-----------GHRNHKGDTACDLARLYGRNEVV 153

Query: 454 AMLLEHGA 461
           +++  +GA
Sbjct: 154 SLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 89.7 bits (224), Expect = 3e-21
 Identities = 36/216 (16%), Positives = 65/216 (30%), Gaps = 68/216 (31%)

Query: 67  TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRG 122
            +     L  A+                           +G  + +  LL+N    + + 
Sbjct: 2   AEPWGNELASAA--------------------------ARGDLEQLTSLLQNNVNVNAQN 35

Query: 123 KDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKAAKLLLE 175
             G T L V  + G+ ++   LL         D  G      +H AA+       +    
Sbjct: 36  GFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFA---VIHDAARAGFLDTLQ---- 87

Query: 176 VSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235
                                  L++ + + ++    G  PLH+A+  G+  V   L+  
Sbjct: 88  ----------------------TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

Query: 236 RA-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270
            A +V      G T   +A   G   +V  +  N A
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 77.8 bits (193), Expect = 4e-17
 Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK-------------MDIATTLLEYGAKP 430
                L   A    +     LL+NN  V+                  +IA  LL  GA P
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANP 63

Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           + +   GF  +H +A  G  D    LLE  ADV+    EG+  L +A K G++ V E L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 49.3 bits (119), Expect = 3e-07
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNN--VDINTANANGLNALHLASKDGHLHVVTELLSRG 60
           EG+     AA+ GHL  ++E L  +   ++   N  G  A  LA   G   VV+ + + G
Sbjct: 102 EGNLPLHLAAKEGHLR-VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

Query: 61  A 61
           A
Sbjct: 161 A 161

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  114 bits (287), Expect = 2e-30
 Identities = 28/117 (23%), Positives = 45/117 (38%)

Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270
                    A   G+       + K  DVN + + G  PLH A+  G + I+ +LL   A
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 271 NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISV 327
           + + P     TPL  A        +++LL  GA    +  +G TA          ++
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 99.4 bits (249), Expect = 4e-25
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 25/126 (19%)

Query: 34  NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG------EFLVPVW 87
            +        A K+G L  V + +++G +V+   + G   LH A+        EFL+   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL--- 60

Query: 88  LGDFKQG--------DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQ 135
                +G           TPL  A+ +GH   V +LL        +G DG T       Q
Sbjct: 61  ----LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116

Query: 136 GHDKVV 141
               ++
Sbjct: 117 AIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 98.6 bits (247), Expect = 7e-25
 Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
               A K  D    K                            +    + + T + G  P
Sbjct: 10  EFMWALKNGDLDEVK--------------------------DYVAKGEDVNRTLEGGRKP 43

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH A+  G   +   LL K AD+N   K  +TPL  A + G ++ V  LL   A+  +  
Sbjct: 44  LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103

Query: 277 VRGETPLHLAARANQTDIIR 296
             G T            +++
Sbjct: 104 PDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 81.7 bits (203), Expect = 6e-19
 Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 14/121 (11%)

Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLL 424
           G              +   +   +  +     V+   +              ++I   LL
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 425 EYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYIS 484
             GA  NA      TPL  +  EGH     +LL  GAD +    +G TA          +
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120

Query: 485 V 485
           +
Sbjct: 121 L 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.4 bits (197), Expect = 4e-18
 Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 30/145 (20%)

Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVS 177
           G         A++ G    V   +      +   +     LH AA     +  +      
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE------ 57

Query: 178 CTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
                               +L+    + +   K   TPL  A + G+     +LL K A
Sbjct: 58  --------------------FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97

Query: 238 DVNFSAKSGLTPLHVASFMGCMNIV 262
           D       GLT            ++
Sbjct: 98  DKTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 76.7 bits (190), Expect = 4e-17
 Identities = 30/162 (18%), Positives = 46/162 (28%), Gaps = 45/162 (27%)

Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
                    A   G ++ V   +    + +     G  PLH AA   Q +I+  LL  GA
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
            ++A  +   T L  A                         EGH +              
Sbjct: 65  DINAPDKHHITPLLSA-----------------------VYEGHVS-------------- 87

Query: 364 SLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
                 + L+    D   K  +GLT       +    +  LL
Sbjct: 88  ----CVKLLLSKGADKTVKGPDGLTAFEATDNQ---AIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 76.3 bits (189), Expect = 5e-17
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           G      AA  G L+ I+E L     DIN  + + +  L  A  +GH+  V  LLS+GA+
Sbjct: 40  GRKPLHYAADCGQLE-ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98

Query: 63  VDSATKKGNTALHIAS 78
                  G TA     
Sbjct: 99  KTVKGPDGLTAFEATD 114

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 66.3 bits (163), Expect = 2e-13
 Identities = 18/138 (13%), Positives = 32/138 (23%), Gaps = 34/138 (24%)

Query: 95  DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN--- 147
                   A++ G    V   +      +   + G  PL  A   G  +++  LL     
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 148 -DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNP 206
            +   K  +  L  A  +      K                           L+    + 
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVK--------------------------LLLSKGADK 99

Query: 207 DVTSKSGFTPLHIASHYG 224
            V    G T      +  
Sbjct: 100 TVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVV 53
             T  L A   GH+   ++ L     D      +GL A           ++
Sbjct: 73  HITPLLSAVYEGHVS-CVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  117 bits (296), Expect = 3e-30
 Identities = 50/291 (17%), Positives = 80/291 (27%), Gaps = 72/291 (24%)

Query: 215 TPLHIASHYGN----EGVANILLDKRADVN----FSAKSGLTPLHVASFM---GCMNIVI 263
             L      G+    EG+ + LL  +  +         +G T L  A      G  + + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 264 YLLQNDANPDIPTV-----------RGETPLHLAARANQTDIIRILLRNGAQVDARAREG 312
            LL                      RG+T LH+A        + +L+  GA V A+AR  
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 313 HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372
                      Y                     G   LS+A       +   L       
Sbjct: 127 FFQPKDEGGYFY--------------------FGELPLSLAACTNQPHIVHYL------- 159

Query: 373 IIAKGDG-----EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYG 427
               G        +   G T LH                +N + +T     +   LL   
Sbjct: 160 -TENGHKQADLRRQDSRGNTVLHALVAI----------ADNTRENTKFVTKMYDLLLIKC 208

Query: 428 AKPNAESVA-------GFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471
           AK   ++         G +PL ++A  G   +   ++      + A    H
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  112 bits (283), Expect = 2e-28
 Identities = 48/299 (16%), Positives = 92/299 (30%), Gaps = 72/299 (24%)

Query: 38  LNALHLASKDGHLHVVTELLSRGANVDS----ATKKGNTALHIASLGEFLVPVWLGDFKQ 93
            + +   S DG   +++ LL+    +          G T L  A                
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA---------------- 53

Query: 94  GDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKV 153
                   + +  G +  + +LL+   +  +             + + +   +   RG+ 
Sbjct: 54  -------LLNLSAGRNDTIPILLDIAEKTGN-----------MREFINSPFRDVYYRGQT 95

Query: 154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSG 213
              ALHIA ++      +LL+E    V           +A   G   +   +       G
Sbjct: 96  ---ALHIAIERRCKHYVELLVEKGADV-----------HAQARGRFFQP-KDEGGYFYFG 140

Query: 214 FTPLHIASHYGNEGVANILLDK---RADVNFSAKSGLTPLHVASFMG---------CMNI 261
             PL +A+      + + L +    +AD+      G T LH    +             +
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 262 VIYLLQNDAN-------PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH 313
              LL   A          +    G +PL +AA+  +  I + ++R      A     H
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  102 bits (256), Expect = 8e-25
 Identities = 49/302 (16%), Positives = 91/302 (30%), Gaps = 72/302 (23%)

Query: 126 FTPLAVAMQQGHDKVVAVLLEN--------DTRGKVRLPALHIAA---KKDDTKAAKLLL 174
           F  ++     G + +++ LL +                  L  A             +LL
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69

Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
           +++          ++                       G T LHIA     +    +L++
Sbjct: 70  DIAEKTGNMREFINSPFRDVY---------------YRGQTALHIAIERRCKHYVELLVE 114

Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
           K ADV+  A+                          +       GE PL LAA  NQ  I
Sbjct: 115 KGADVHAQARGRFFQPK-------------------DEGGYFYFGELPLSLAACTNQPHI 155

Query: 295 IRILLRNG---AQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALS 351
           +  L  NG   A +  +   G+T L     +   + E +    +              L 
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM---------YDLLLI 206

Query: 352 IAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQV 411
              KL   +  E+L                + +GL+PL + A+  ++G+ + +++     
Sbjct: 207 KCAKLFPDTNLEAL---------------LNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

Query: 412 DT 413
             
Sbjct: 252 AA 253

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 89.5 bits (222), Expect = 3e-20
 Identities = 43/258 (16%), Positives = 72/258 (27%), Gaps = 72/258 (27%)

Query: 4   GHTSFLRAA---RAGHLDKI---IEHLKN--------NVDINTANANGLNALHLASKDGH 49
           G T   +A     AG  D I   ++  +         N         G  ALH+A +   
Sbjct: 46  GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

Query: 50  LHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHD 109
            H V  L+ +GA+V +  +             +             G  PL++A      
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFY------------FGELPLSLAACTNQP 153

Query: 110 KVVAVLLEN-------DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAA 162
            +V  L EN         +   G T L   +    +                        
Sbjct: 154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN--------------------TREN 193

Query: 163 KKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH 222
            K  TK   LLL                        L  + +   + +  G +PL +A+ 
Sbjct: 194 TKFVTKMYDLLLIK-------------------CAKLFPDTNLEALLNNDGLSPLMMAAK 234

Query: 223 YGNEGVANILLDKRADVN 240
            G  G+   ++ +     
Sbjct: 235 TGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 79.1 bits (195), Expect = 1e-16
 Identities = 51/277 (18%), Positives = 81/277 (29%), Gaps = 74/277 (26%)

Query: 248 TPLHVASFMGCMN----IVIYLLQNDANPDIPTVR----GETPLHLAA---RANQTDIIR 296
             L      G  +    ++ +LL +         R    G+T L  A     A + D I 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKL 356
           ILL    +                     ++ E + +  R    +    G TAL IA + 
Sbjct: 67  ILLDIAEKTG-------------------NMREFINSPFRDVYYR----GQTALHIAIER 103

Query: 357 GYISVEESL--KGV------TETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNN 408
                 E L  KG              K +G     G  PL L A  ++  +   L +N 
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163

Query: 409 AQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH---------ADMSAMLLEH 459
            +                 A    +   G T LH   +              M  +LL  
Sbjct: 164 HK----------------QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK 207

Query: 460 GADVSHAA-------KEGHTALSIAQKLGYISVEESL 489
            A +            +G + L +A K G I + + +
Sbjct: 208 CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 16  HLDKIIEHLKN----NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGN 71
             D ++                N +GL+ L +A+K G + +   ++ R     +A    +
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  111 bits (279), Expect = 1e-28
 Identities = 26/205 (12%), Positives = 58/205 (28%), Gaps = 38/205 (18%)

Query: 120 TRGKDGFTPLAVAMQQGHDKVVAVLLEN---DTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
           +     +  ++ A   G  +    L E    D    ++   L+   + ++ +A   +   
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM- 59

Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN------ 230
                                +LI    +    +K G T        G   +        
Sbjct: 60  ---------------------FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK 98

Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIV-------IYLLQNDANPDIPTVRGETPL 283
           I L+K AD+    K     +    F   ++         +   Q+     I    G T L
Sbjct: 99  IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158

Query: 284 HLAARANQTDIIRILLRNGAQVDAR 308
               R  +   ++++     + + +
Sbjct: 159 EFVKRCQKPIALKMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  100 bits (250), Expect = 1e-24
 Identities = 28/214 (13%), Positives = 57/214 (26%), Gaps = 46/214 (21%)

Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSA---KSGLTPLHVASFMGCMNIVIYLL 266
           + S +  +  A+  G       L +K  +   S          L   +      I ++L+
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 267 QNDANPDIPTVRGETPLHLAARANQTDI------IRILLRNGAQVDARAREGHTALSIAQ 320
              A+    T  G T      +    DI       +I L  GA + A  +     +    
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

Query: 321 KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG- 379
              ++   E                                   +  + + +    G   
Sbjct: 123 FNYFVDENE-----------------------------------MIPLYKLIFSQSGLQL 147

Query: 380 -EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD 412
             K K GLT L    +  +    +++     + +
Sbjct: 148 LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 94.7 bits (236), Expect = 9e-23
 Identities = 26/226 (11%), Positives = 54/226 (23%), Gaps = 53/226 (23%)

Query: 243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR---GETPLHLAARANQTDIIRILL 299
           A S    +  A+ +G     + L +         ++       L       +  I   L+
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 300 RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI 359
             GA + +R +EG T      + G   +  +    +                        
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK------------------------ 98

Query: 360 SVEESLKGVTETLIIAKG-D-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKM 417
                       + + KG D    +K     +        V   E++             
Sbjct: 99  ------------IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL----------- 135

Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV 463
                  + G +   +   G T L             M+ ++    
Sbjct: 136 -YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 93.6 bits (233), Expect = 2e-22
 Identities = 24/251 (9%), Positives = 53/251 (21%), Gaps = 87/251 (34%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANAN---GLNALHLASKDGHLHVVTELLSR 59
             + +   AA  G  +  +E  +   +   +        + L   + +    +   L+++
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 60  GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVA------ 113
           GA++ S TK+G T                                Q G + +        
Sbjct: 65  GADIKSRTKEGTTLFFPLF--------------------------QGGGNDITGTTELCK 98

Query: 114 VLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKA 169
           + LE         K                                  +           
Sbjct: 99  IFLEKGADITALYKPYKIV-----------------------------VFKNIFNYFVDE 129

Query: 170 AKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA 229
            +++                           ++     +  K G T L            
Sbjct: 130 NEMIPLYKL-------------------IFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170

Query: 230 NILLDKRADVN 240
            ++ D     N
Sbjct: 171 KMMEDYIKKYN 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 86.7 bits (215), Expect = 6e-20
 Identities = 27/220 (12%), Positives = 48/220 (21%), Gaps = 61/220 (27%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
               +  AA     +    L   G   + +     + +                      
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNI---------------------- 41

Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG-D-GEKHKNGLTPLHLCAQED 396
                   +  L          +   L        I KG D   + K G T      Q  
Sbjct: 42  -------LYDVLRNNNDEARYKISMFL--------INKGADIKSRTKEGTTLFFPLFQGG 86

Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM- 455
              +                 ++    LE GA   A        +  +      D + M 
Sbjct: 87  GNDITGTT-------------ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI 133

Query: 456 ------LLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
                   + G  +    K G TAL   ++       + +
Sbjct: 134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 29/164 (17%)

Query: 344 REGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL 403
              +  +S A  LG       L          KG  +K     + +              
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLEL--------FEKGYEDKESVLKSNILYDV---------- 45

Query: 404 LLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM------LL 457
            L+NN       +  I+  L+  GA   + +  G T        G  D++         L
Sbjct: 46  -LRNNND---EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101

Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKG 501
           E GAD++   K     +       ++   E +  + + +    G
Sbjct: 102 EKGADITALYKPYKIVVFKNIFNYFVDENE-MIPLYKLIFSQSG 144

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  105 bits (264), Expect = 4e-27
 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
             + H  D         L  A+  G +    IL+   ADVN   + GLTPL++A+  G +
Sbjct: 6   HHHHHGSD-----LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHL 60

Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
            IV  LL+N A+ +     G TPLHLAA     +I  +LL++GA V+A+ + G TA  I+
Sbjct: 61  EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

Query: 320 QKLGYISVEESL 331
              G   + E L
Sbjct: 121 IGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.8 bits (232), Expect = 9e-23
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 26/143 (18%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            L  AA+       +                           L+ N  + +   + G TP
Sbjct: 17  KLLEAARAGQDDEVR--------------------------ILMANGADVNAKDEYGLTP 50

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           L++A+ +G+  +  +LL   ADVN     G TPLH+A+F+G + I   LL++ A+ +   
Sbjct: 51  LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110

Query: 277 VRGETPLHLAARANQTDIIRILL 299
             G+T   ++      D+  IL 
Sbjct: 111 KFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 88.6 bits (221), Expect = 4e-21
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 32/150 (21%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
                L AARAG  D  +  L  N  D+N  +  GL  L+LA+  GHL +V  LL  GA+
Sbjct: 14  LGKKLLEAARAGQDD-EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
           V++    G T LH+A+                            GH ++  VLL++    
Sbjct: 73  VNAVDAIGFTPLHLAA--------------------------FIGHLEIAEVLLKHGADV 106

Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLEND 148
           + + K G T   +++  G++ +  +L + +
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 83.2 bits (207), Expect = 3e-19
 Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 49/181 (27%)

Query: 229 ANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAAR 288
           ++      +D+          L  A+  G  + V  L+ N A+ +     G TPL+LA  
Sbjct: 4   SHHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56

Query: 289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHT 348
               +I+ +LL+NGA V+A    G T L +A                          GH 
Sbjct: 57  HGHLEIVEVLLKNGADVNAVDAIGFTPLHLA-----------------------AFIGH- 92

Query: 349 ALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKN 407
                              + E L+    D   + K G T   +        +AE+L K 
Sbjct: 93  -----------------LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

Query: 408 N 408
           N
Sbjct: 136 N 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 81.7 bits (203), Expect = 9e-19
 Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 36/155 (23%)

Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKAAKLLL 174
           G D    L  A + G D  V +L+ N       D  G      L++A      +  ++L 
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLT---PLYLATAHGHLEIVEVL- 66

Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
                                    +KN  + +     GFTPLH+A+  G+  +A +LL 
Sbjct: 67  -------------------------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101

Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
             ADVN   K G T   ++   G  ++   L + +
Sbjct: 102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 46/197 (23%), Positives = 68/197 (34%), Gaps = 68/197 (34%)

Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
           +   + ++           L  AARA Q D +RIL+ NGA V+A+   G T L +A    
Sbjct: 6   HHHHHGSD-------LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA---- 54

Query: 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKH 382
                                 GH                    + E L+    D     
Sbjct: 55  -------------------TAHGH------------------LEIVEVLLKNGADVNAVD 77

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
             G TPLHL A    + +AE+LLK+                   GA  NA+   G T   
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKH-------------------GADVNAQDKFGKTAFD 118

Query: 443 LSASEGHADMSAMLLEH 459
           +S   G+ D++ +L + 
Sbjct: 119 ISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 14/120 (11%)

Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAK 429
           +    L   A+  +     +L+ N A V+   +              ++I   LL+ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
            NA    GFTPLHL+A  GH +++ +LL+HGADV+   K G TA  I+   G   + E L
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  102 bits (257), Expect = 1e-26
 Identities = 39/92 (42%), Positives = 58/92 (63%)

Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           +G TPLH+A+  G+  V  +LL+  ADVN   K+G TPLH+A+  G + +V  LL+  A+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
            +     G TPLHLAAR    +++++LL  GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 85.5 bits (213), Expect = 1e-20
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 30/116 (25%)

Query: 36  NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
           NG   LHLA+++GHL VV  LL  GA+V++  K G T LH+A+                 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----------------- 43

Query: 96  GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
                    + GH +VV +LLE     + + K+G TPL +A + GH +VV +LLE 
Sbjct: 44  ---------RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 33/87 (37%), Positives = 54/87 (62%)

Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
           +G TPLH+A+  G + +V  LL+  A+ +     G TPLHLAAR    +++++LL  GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 305 VDARAREGHTALSIAQKLGYISVEESL 331
           V+A+ + G T L +A + G++ V + L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.2 bits (194), Expect = 5e-18
 Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 28/116 (24%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           G T    AAR GHL+ +++ L +   D+N  + NG   LHLA+++GHL VV  LL  GA+
Sbjct: 2   GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
           V++  K G T LH+A+                          + GH +VV +LLE 
Sbjct: 61  VNAKDKNGRTPLHLAA--------------------------RNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.9 bits (188), Expect = 4e-17
 Identities = 28/73 (38%), Positives = 44/73 (60%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
            L++   + +   K+G TPLH+A+  G+  V  +LL+  ADVN   K+G TPLH+A+  G
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79

Query: 258 CMNIVIYLLQNDA 270
            + +V  LL+  A
Sbjct: 80  HLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.4 bits (179), Expect = 5e-16
 Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 19/106 (17%)

Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
           NG TPLHL A+   + V +LLL+                    GA  NA+   G TPLHL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-------------------GADVNAKDKNGRTPLHL 41

Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           +A  GH ++  +LLE GADV+   K G T L +A + G++ V + L
Sbjct: 42  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.5 bits (130), Expect = 2e-09
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 4  GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
          G T    AAR GHL+ +++ L +   D+N  + NG   LHLA+++GHL VV  LL  GA
Sbjct: 35 GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  101 bits (252), Expect = 9e-24
 Identities = 41/286 (14%), Positives = 85/286 (29%), Gaps = 51/286 (17%)

Query: 199 LIKNEHNPDVTSKSGFTPL-HIASHYGNEGVANILLDKRADVNFSA-KSGLTPLHVASFM 256
           L  +  N +    S      H++     + V +   + + ++N    + G TPLH  + +
Sbjct: 82  LNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI 141

Query: 257 GCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN----QTDIIRILLRNGAQVDARAREG 312
             + +V +L+++ +N       GE+ L  A ++           +L      +       
Sbjct: 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 201

Query: 313 HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372
            T L                              H  ++        + +  L  +   +
Sbjct: 202 RTILH-----------------------------HIIITSGMTGCSAAAKYYLDILMGWI 232

Query: 373 IIAKG-DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPN 431
           +  +    +   N           +R       L                         N
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL---------------KWIIANMLN 277

Query: 432 AESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
           A+   G T L+++A  G+  +   LL++GAD   A K G   +   
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 99.7 bits (248), Expect = 3e-23
 Identities = 43/290 (14%), Positives = 88/290 (30%), Gaps = 67/290 (23%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKN-NVDINTA-NANGLNALHLASKDGHLHVVTELLSRGA 61
            +      +    L ++ +   N  +++N   + +G   LH  +   +L +V  L+  G+
Sbjct: 96  SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 155

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR 121
           N       G + L  A        V   +      F  L   +   +  +          
Sbjct: 156 NRLYGDNMGESCLVKA--------VKSVNNYDSGTFEAL---LDYLYPCL-------ILE 197

Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVD 181
                T L       H                    +  +     + AAK  L++     
Sbjct: 198 DSMNRTIL-------HH------------------IIITSGMTGCSAAAKYYLDILM--- 229

Query: 182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGN----EGVANILLDKRA 237
                          G+++K ++ P  +  +         +           ++      
Sbjct: 230 ---------------GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274

Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA 287
            +N    +G T L++A+ +G ++IV  LL   A+P I    G  P+   A
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 86.2 bits (213), Expect = 1e-18
 Identities = 41/339 (12%), Positives = 84/339 (24%), Gaps = 99/339 (29%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELL-SRGA 61
           +      R       +       ++ + N+   +        S D  L  V +   +   
Sbjct: 62  KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 121

Query: 62  NVDSAT-KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
           N++    + GNT LH  +                             + ++V  L+++  
Sbjct: 122 NLNIPVDEHGNTPLHWLT--------------------------SIANLELVKHLVKHGS 155

Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
                   G + L  A++  ++                           D+   + LL+ 
Sbjct: 156 NRLYGDNMGESCLVKAVKSVNNY--------------------------DSGTFEALLD- 188

Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIA------------SHYG 224
                                YL       D       T LH              + Y 
Sbjct: 189 ---------------------YLYPCLILED---SMNRTILHHIIITSGMTGCSAAAKYY 224

Query: 225 NEGVANILLDKRADVNFSAKSGLTPLHVA----SFMGCMNIVIYLLQNDANPDIPTVRGE 280
            + +   ++ K+     S  +                 +  +          +     G+
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 284

Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           T L++AAR     I+  LL  GA      + G   +   
Sbjct: 285 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 82.4 bits (203), Expect = 2e-17
 Identities = 31/220 (14%), Positives = 63/220 (28%), Gaps = 28/220 (12%)

Query: 198 YLIKNEHNPDVTS-KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFM 256
                + N ++   + G TPLH  +   N  +   L+   ++  +    G + L  A   
Sbjct: 115 AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS 174

Query: 257 G----CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD------------IIRILLR 300
                       L        +      T LH     +               ++  +++
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 301 NGAQVDARAREGHTALSIAQKLGYISVEE---SLGAAERSQLKKRGREGHTALSIAQKLG 357
              +          +    +             L     + L  +   G T L+IA +LG
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

Query: 358 YISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQED 396
                     + + L+    D    +K+GL P+   A  +
Sbjct: 295 N-------ISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 82.0 bits (202), Expect = 2e-17
 Identities = 41/294 (13%), Positives = 79/294 (26%), Gaps = 49/294 (16%)

Query: 202 NEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM-N 260
              N +         L        + +   L +  ++ N    S        SF   +  
Sbjct: 52  PVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE 111

Query: 261 IVIYLLQNDANPDIPT-VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           +         N +IP    G TPLH        ++++ L+++G+        G + L   
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCL--- 168

Query: 320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG 379
                                        A+         + E  L  +   LI      
Sbjct: 169 ---------------------------VKAVKSVNNYDSGTFEALLDYLYPCLI------ 195

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
            +     T LH       +       K    +       +   +++   +P         
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDI-------LMGWIVKKQNRPIQSGTNEKE 248

Query: 440 PLHLSASEGHADMSAMLLEH----GADVSHAAKEGHTALSIAQKLGYISVEESL 489
                 +    D     L+        ++     G T L+IA +LG IS+ ++L
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 92.6 bits (231), Expect = 7e-23
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
            S + +   ++ L+ + + +          L  A+  G  + V  L+ N A+       G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            TPLHLAAR    +++++LL  GA V A+ + G TA  I+   G   + E L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 86.9 bits (216), Expect = 7e-21
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
            L+       + S      L  A+  G +    IL+   ADV    K+G TPLH+A+  G
Sbjct: 12  GLV--PRGSHMGSD-LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68

Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
            + +V  LL+  A+       G+T   ++      D+  IL
Sbjct: 69  HLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.9 bits (203), Expect = 5e-19
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 35/139 (25%)

Query: 11  AARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKK 69
            +   H       L      +    ++    L  A++ G    V  L++ GA+V +  K 
Sbjct: 1   GSSHHHHH-HSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 70  GNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDG 125
           G+T LH+A+                          + GH +VV +LLE       + K G
Sbjct: 57  GSTPLHLAA--------------------------RNGHLEVVKLLLEAGADVXAQDKFG 90

Query: 126 FTPLAVAMQQGHDKVVAVL 144
            T   +++  G++ +  +L
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.5 bits (184), Expect = 2e-16
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 21/125 (16%)

Query: 366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLE 425
              +  L+  +G      +    L   A+  +     +L+ N                  
Sbjct: 7   HHHSSGLV-PRG-SHMGSDLGKKLLEAARAGQDDEVRILMAN------------------ 46

Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
            GA   A+   G TPLHL+A  GH ++  +LLE GADV    K G TA  I+   G   +
Sbjct: 47  -GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105

Query: 486 EESLK 490
            E L+
Sbjct: 106 AEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.0 bits (180), Expect = 5e-16
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 37/138 (26%)

Query: 44  ASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVA 103
            S   H H  + L+ RG+++          L  A+                         
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAA------------------------- 32

Query: 104 MQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRL 155
            + G D  V +L+ N      + K+G TPL +A + GH +VV +LLE       + K   
Sbjct: 33  -RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91

Query: 156 PALHIAAKKDDTKAAKLL 173
            A  I+    +   A++L
Sbjct: 92  TAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 69.9 bits (172), Expect = 5e-15
 Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 4  GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
               L AARAG  D  +  L  N  D+   + NG   LHLA+++GHL VV  LL  GA+
Sbjct: 24 LGKKLLEAARAGQDD-EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82

Query: 63 VDSATKKGNTALHIAS 78
          V +  K G TA  I+ 
Sbjct: 83 VXAQDKFGKTAFDISI 98

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 33/138 (23%)

Query: 132 AMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLS 187
                H    + L+       +        L  AA+       +                
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLGK---KLLEAARAGQDDEVR---------------- 41

Query: 188 STTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL 247
                      L+ N  +     K+G TPLH+A+  G+  V  +LL+  ADV    K G 
Sbjct: 42  ----------ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91

Query: 248 TPLHVASFMGCMNIVIYL 265
           T   ++   G  ++   L
Sbjct: 92  TAFDISIDNGNEDLAEIL 109

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 88.1 bits (218), Expect = 2e-19
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 218 HIASHYGNEGVANILLDKRADVNFSAK------SGLTPLHVASFMG---CMNIVIYLLQN 268
             A    +            D                 LH+A  +     + +V +++QN
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
             + D     G T LH AA  NQ D +++LL+  A V      G TAL IA+K  +   E
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

Query: 329 ESLGAAERSQL 339
           E L  A+    
Sbjct: 276 ELLEQAQAGTF 286

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.5 bits (167), Expect = 7e-13
 Identities = 30/111 (27%), Positives = 47/111 (42%)

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
           E   NG          D     EL+L    +V     + +   +++ G   +A++  G T
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228

Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
            LH +A     D   +LL+  A V    + G TAL IA+K  +   EE L+
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.8 bits (142), Expect = 9e-10
 Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 41/166 (24%)

Query: 8   FLRAARAGHLDKIIEHLKNNVDIN------TANANGLNALHLASKDGH---LHVVTELLS 58
              A     L  ++E   N  D         A A     LHLA K  +   L +V  ++ 
Sbjct: 155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 214

Query: 59  RGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
            G ++D+    GNTALH A+                                 + +LL+ 
Sbjct: 215 NGGHLDAKAADGNTALHYAA--------------------------LYNQPDCLKLLLKG 248

Query: 119 ----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHI 160
                T  + G T L +A ++ H +    LLE    G    P LH+
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEE-LLEQAQAGTFAFP-LHV 292

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 1   SGEGHTSFLRAARAGHLDK--IIEHLK-NNVDINTANANGLNALHLASKDGHLHVVTELL 57
                     A +  +     +++ +  N   ++   A+G  ALH A+       +  LL
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 58  SRGANVDSATKKGNTALHIA 77
              A V +  + G TAL IA
Sbjct: 247 KGRALVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.8 bits (129), Expect = 5e-08
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
           ++I+N  + D  +  G T LH A+ Y       +LL  RA V    ++G T L +A    
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270

Query: 258 CMNIVIYLLQNDAN 271
                  L Q  A 
Sbjct: 271 HKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 17/99 (17%)

Query: 377 GDGEKHKNGLTPLHL---CAQEDRVGVAELLLKNNAQVDTPT--------------KMDI 419
              +        LHL    A +  + + + +++N   +D                 + D 
Sbjct: 182 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 241

Query: 420 ATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE 458
              LL+  A     + AG T L ++  + H +   +L +
Sbjct: 242 LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 87.0 bits (215), Expect = 3e-19
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 248 TPLHVASFMG---CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
           T LH+A        ++IV +L+QN  N D  T +G T LH     +  + +++LLR  A 
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
           ++     G T L IA++L +   EE L  A   + 
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.8 bits (186), Expect = 2e-15
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 204 HNPDVTSKSGFTPLHIASHYGNEG---VANILLDKRADVNFSAKSGLTPLHVASFMGCMN 260
                  +   T LH+A    +     + + L+    +++     G T LH         
Sbjct: 160 IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219

Query: 261 IVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
            +  LL+  A+ +I    GETPL +A R        +L 
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.5 bits (167), Expect = 6e-13
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 16/108 (14%)

Query: 382 HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPL 441
           H+   T LHL  +                    T + I   L++     + ++  G T L
Sbjct: 166 HEPDETALHLAVR----------------SVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209

Query: 442 HLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           H      +A+   +LL   A +  A + G T L IA++L +   EE L
Sbjct: 210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 39/153 (25%)

Query: 7   SFLRAARAGHLDKIIEHLKNNVDIN------TANANGLNALHLASKDG---HLHVVTELL 57
           S   A +   +  +++   + VD+         +     ALHLA +      LH+V  L+
Sbjct: 133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 192

Query: 58  SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE 117
               N+D  T KG+TALH                                + + + +LL 
Sbjct: 193 QNSGNLDKQTGKGSTALHYCC--------------------------LTDNAECLKLLLR 226

Query: 118 N----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
                +   + G TPL +A +  H+    +L +
Sbjct: 227 GKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCA 393
           E+  L        TAL +A +      + +   + + L+   G+  ++   G T LH C 
Sbjct: 158 EKIPLANGHEPDETALHLAVRSV----DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC 213

Query: 394 QEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
             D     +LLL+                     A     + +G TPL ++    H    
Sbjct: 214 LTDNAECLKLLLRG-------------------KASIEIANESGETPLDIAKRLKHEHCE 254

Query: 454 AMLLE 458
            +L +
Sbjct: 255 ELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 1   SGEGHTSFLRAARAGHLDK--IIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELL 57
                T+   A R+       I++ L +N+ +++     G  ALH      +   +  LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 58  SRGANVDSATKKGNTALHIA 77
              A+++ A + G T L IA
Sbjct: 226 RGKASIEIANESGETPLDIA 245

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 24/97 (24%), Positives = 39/97 (40%)

Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
           E   T    +V S    +     +L++N  N D  +  G T LH      N     +LL 
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
            +A +  + +SG TPL +A  +   +    L Q  + 
Sbjct: 227 GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 86.4 bits (213), Expect = 1e-18
 Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 2/180 (1%)

Query: 161 AAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIA 220
             K  + +  +          P     S      +     +       +   G      +
Sbjct: 148 LTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRAS 207

Query: 221 SHYGNEGVANILLDKRADVNF--SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR 278
            H  +       L   ADVN+    +   TPL  A+    +    +LLQN AN +     
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
           G  PLH A     T +  + L+ GA + AR  EG   L+IA +     +   L  A+  +
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 64.4 bits (156), Expect = 2e-11
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 19/109 (17%)

Query: 382 HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPL 441
            ++  TPL      + +   E LL+N A V+                        G  PL
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSA-------------------GRGPL 272

Query: 442 HLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           H +   GH  ++ + L+ GAD+     EG   L+IA +     +   L+
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 11  AARAGHLDKIIEHLKNNVDINTANAN--GLNALHLASKDGHLHVVTELLSRGANVDSATK 68
           +     L  + + L +  D+N  N        L  A+    L     LL  GANV+ A  
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266

Query: 69  KGNTALHIASLGEFLVPVWL-------GDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR 121
            G   LH A++        L          +  +G  PL +AM+  +  +V +L     R
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326

Query: 122 GKDGF 126
             +  
Sbjct: 327 EAEAA 331

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 21/88 (23%), Positives = 37/88 (42%)

Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
            ++   +     +L++N  N +    +G  PLH A+  G+ G+A + L + AD+      
Sbjct: 241 QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 300

Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPD 273
           G  PL +A      +IV  L        
Sbjct: 301 GRDPLTIAMETANADIVTLLRLAKMREA 328

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 22/77 (28%), Positives = 36/77 (46%)

Query: 1   SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
             +  T  ++A  A  L      L+N  ++N A++ G   LH A+  GH  +    L RG
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291

Query: 61  ANVDSATKKGNTALHIA 77
           A++ +   +G   L IA
Sbjct: 292 ADLGARDSEGRDPLTIA 308

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIA---SHYGNEGVA 229
           L    C  D  SVL      A   G                   LH+A   ++  +  + 
Sbjct: 136 LWTAICNRDLLSVLE-----AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 230 NILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA 289
           + ++     ++  A  G T LH A+     + +  LL+  A        GET L +A + 
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 290 NQTDIIRIL 298
           +  +   +L
Sbjct: 251 HHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 2   GEGHTSFLRAARAGHLDK--IIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLS 58
                    A +  +     +++ + +N   ++   A+G  ALH A+       +  LL 
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228

Query: 59  RGANVDSATKKGNTALHIAS 78
             A V +  + G TAL IA 
Sbjct: 229 GRALVGTVNEAGETALDIAR 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 55/392 (14%), Positives = 107/392 (27%), Gaps = 139/392 (35%)

Query: 17  LD-----KIIEHLKNNVDI-----NTANANGLNAL---HLASKDGHLHVVTE-----LLS 58
           L      K       +  I          + L+A    H++    H   +T      LL 
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLL 308

Query: 59  RGANVD-----SATKKGNTALHIASLGEFL---VPVWLGDFKQGDGFTPLAVAMQQGHDK 110
           +  +             N    ++ + E +   +  W  D  +      L   ++     
Sbjct: 309 KYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIESS--- 362

Query: 111 VVAVLLENDTRGKDGFTPLAV--------------------------AMQQGHDKVVAVL 144
            + VL   + R    F  L+V                           + + H    +++
Sbjct: 363 -LNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLV 417

Query: 145 LENDTRGKVRLPALHIAAK-KDDTKAA--KLLLEVSCTVDPASVLSSTTGNAATGGYLIK 201
            +      + +P++++  K K + + A  + +++                      Y I 
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVD---------------------HYNIP 456

Query: 202 NEHNPDVTSKSGFTPL--------HIASHYGNEGVA-------NILLDKRADVNF-SAKS 245
              + D        P         HI  H  N            + LD R    F   K 
Sbjct: 457 KTFDSD-----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR----FLEQKI 507

Query: 246 GLTPLHVASFMGCMNIVI-------YLLQNDANPD---------IPTVRGETPLHLAARA 289
                   +    +N +        Y+  ND   +         +P +  E  L     +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI--EENLI---CS 562

Query: 290 NQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
             TD++RI L    + +A   E   A    Q+
Sbjct: 563 KYTDLLRIALMA--EDEAIFEE---AHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	529
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9e-65  Score=495.36  Aligned_cols=409  Identities=34%  Similarity=0.546  Sum_probs=294.2

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      ..|.||||.||..|++++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.          
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~----------   81 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ----------   81 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC----------
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC----------
Confidence            5789999999999999999999999999999999999999999999999999999999999987766554          


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA  157 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  157 (529)
                                      |||++|+..|+.+++++|++++++    +..|.|||++|+..|+.+++++|++.+..       
T Consensus        82 ----------------t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-------  138 (437)
T 1n11_A           82 ----------------TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-------  138 (437)
T ss_dssp             ----------------CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-------
T ss_pred             ----------------CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-------
Confidence                            455567889999999999998765    66788888888888888888888876543       


Q ss_pred             HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy2356         158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA  237 (529)
Q Consensus       158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  237 (529)
                                                                      .+..+..|.||||+|+..|+.+++++|+++|+
T Consensus       139 ------------------------------------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  170 (437)
T 1n11_A          139 ------------------------------------------------QACMTKKGFTPLHVAAKYGKVRVAELLLERDA  170 (437)
T ss_dssp             ------------------------------------------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ------------------------------------------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence                                                            12233345556666666666666666666666


Q ss_pred             CCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHH
Q psy2356         238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALS  317 (529)
Q Consensus       238 ~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  317 (529)
                      +++..+..|.|||+.|+..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus       171 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  250 (437)
T 1n11_A          171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH  250 (437)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            55555555666666666666666666666665555555555566666666666666666666666655555555666666


Q ss_pred             HHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCC
Q psy2356         318 IAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR  397 (529)
Q Consensus       318 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  397 (529)
                      +|+..|+.+++++|++. ..+.+..+..|.||||+|+..++.+++++|.+      .....+..+..|.||||+|+..|+
T Consensus       251 ~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~~g~  323 (437)
T 1n11_A          251 LAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIK------HGVMVDATTRMGYTPLHVASHYGN  323 (437)
T ss_dssp             HHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH------HTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             HHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh------CCccCCCCCCCCCCHHHHHHHcCc
Confidence            66666666666655543 33445555556666666666666666665522      122335667789999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHH
Q psy2356         398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA  477 (529)
Q Consensus       398 ~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  477 (529)
                      .+++++|+++                   |+++|.++..|+||||+|+++|+.++|++|+++|++++.+|..|.||+++|
T Consensus       324 ~~~v~~Ll~~-------------------gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A  384 (437)
T 1n11_A          324 IKLVKFLLQH-------------------QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA  384 (437)
T ss_dssp             SHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             HHHHHHHHhc-------------------CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            9988888876                   556788888999999999999999999999999999999999999999999


Q ss_pred             HHhCCchHHHHhhcccchhhhccCCCCccccchhhhhhhcc
Q psy2356         478 QKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETF  518 (529)
Q Consensus       478 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (529)
                      .+.|+.+++++|........... .....+...|+.+.+.+
T Consensus       385 ~~~g~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  424 (437)
T 1n11_A          385 KRLGYISVTDVLKVVTDETSFVL-VSDKHRMSFPETVDEIL  424 (437)
T ss_dssp             HHTTCHHHHHHHHHHCCCCSSCC-----CCCCCCCCCCC--
T ss_pred             HHcCcHHHHHHHHhccccccccc-cchhcccCCccccchhh
Confidence            99999999999987765433221 12223334455555443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-59  Score=458.03  Aligned_cols=378  Identities=35%  Similarity=0.509  Sum_probs=329.9

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccccCCCCCHHHHHHH
Q psy2356          26 NNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQ  105 (529)
Q Consensus        26 ~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~  105 (529)
                      .|++++..+..|+||||+||..|+.++|++|+++|++++..+..+.                          |||++|+.
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~--------------------------t~L~~A~~   56 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE--------------------------TPLHMAAR   56 (437)
T ss_dssp             ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC--------------------------CHHHHHHH
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC--------------------------CHHHHHHH
Confidence            5788899999999999999999999999999999999987665544                          55667788


Q ss_pred             cCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHHHhccCCCC
Q psy2356         106 QGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVD  181 (529)
Q Consensus       106 ~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  181 (529)
                      .|+.+++++|++.+++    +..+.|||++|+..|+.+++++|++++                                 
T Consensus        57 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---------------------------------  103 (437)
T 1n11_A           57 AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN---------------------------------  103 (437)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT---------------------------------
T ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC---------------------------------
Confidence            9999999999998765    566778888888888777777776533                                 


Q ss_pred             CCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy2356         182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNI  261 (529)
Q Consensus       182 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~  261 (529)
                                            .+++..+..|.||||+|+..|+.+++++|++.+++.+..+..|.|||++|+..|+.++
T Consensus       104 ----------------------a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~  161 (437)
T 1n11_A          104 ----------------------ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV  161 (437)
T ss_dssp             ----------------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ----------------------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence                                  3445667789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhccccccc
Q psy2356         262 VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKK  341 (529)
Q Consensus       262 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  341 (529)
                      +++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.. .+++.
T Consensus       162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~  240 (437)
T 1n11_A          162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANA  240 (437)
T ss_dssp             HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998654 56788


Q ss_pred             CCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHH
Q psy2356         342 RGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIAT  421 (529)
Q Consensus       342 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  421 (529)
                      .+..|.||||+|+..++.+++++|.+.      ..+.+..+..|.||||+|+..|+.+++++|+++              
T Consensus       241 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--------------  300 (437)
T 1n11_A          241 ESVQGVTPLHLAAQEGHAEMVALLLSK------QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH--------------  300 (437)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--------------
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--------------
Confidence            889999999999999999999999432      233467788999999999999999998888876              


Q ss_pred             HHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhccC
Q psy2356         422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKG  501 (529)
Q Consensus       422 ~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~  501 (529)
                           |++++.++..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|++++.++...+.
T Consensus       301 -----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~  375 (437)
T 1n11_A          301 -----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  375 (437)
T ss_dssp             -----TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             -----CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCC
Confidence                 556788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccch
Q psy2356         502 DGEKHKVVA  510 (529)
Q Consensus       502 ~~~~~~~~~  510 (529)
                      .|++...+.
T Consensus       376 ~g~t~l~~A  384 (437)
T 1n11_A          376 DGTTPLAIA  384 (437)
T ss_dssp             SSCCHHHHH
T ss_pred             CCCCHHHHH
Confidence            998877765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.8e-46  Score=351.44  Aligned_cols=296  Identities=26%  Similarity=0.333  Sum_probs=202.8

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANA-NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      +|+|+|+.||+.|++++|++|+++|+++|..+. .|+||||+||..|+.++|++|+++|++++..+..+.+         
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~---------   94 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT---------   94 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC---------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc---------
Confidence            589999999999999999999999999998765 5999999999999999999999999999887766555         


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA  157 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  157 (529)
                                       +++.++..+...++..++..+.+    +..|.||+++|+..|+.+++++|++.+.+.....  
T Consensus        95 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~--  155 (337)
T 4g8k_A           95 -----------------PFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR--  155 (337)
T ss_dssp             -----------------HHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC--
T ss_pred             -----------------hhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh--
Confidence                             45566778888999999888655    6677888888888888888887777655432110  


Q ss_pred             HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh-CC
Q psy2356         158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD-KR  236 (529)
Q Consensus       158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g  236 (529)
                                                                 .........+..|.||||+|+..|+.+++++|++ .|
T Consensus       156 -------------------------------------------~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~g  192 (337)
T 4g8k_A          156 -------------------------------------------KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  192 (337)
T ss_dssp             -------------------------------------------CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSC
T ss_pred             -------------------------------------------ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccC
Confidence                                                       1111222344456666666666666666666664 46


Q ss_pred             CCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccccccc
Q psy2356         237 ADVNFSAKSGLTPLHVASFMGC----MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN-GAQVDARARE  311 (529)
Q Consensus       237 ~~~~~~~~~~~~~l~~a~~~~~----~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~  311 (529)
                      ++++..+..|.++++.++..+.    .+++++|+++|++++.++..|.||||+|+..|+.+++++|++. |++++.+   
T Consensus       193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~---  269 (337)
T 4g8k_A          193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT---  269 (337)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCB---
T ss_pred             CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCc---
Confidence            6666666666666665544332    2344555555555555555555555555555555555555542 3444333   


Q ss_pred             CCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHH
Q psy2356         312 GHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL  391 (529)
Q Consensus       312 g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~  391 (529)
                                                                                            +..|.||||+
T Consensus       270 ----------------------------------------------------------------------d~~G~TpL~~  279 (337)
T 4g8k_A          270 ----------------------------------------------------------------------DSDGKTALLL  279 (337)
T ss_dssp             ----------------------------------------------------------------------CTTSCBHHHH
T ss_pred             ----------------------------------------------------------------------CCCCCCHHHH
Confidence                                                                                  3345566666


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcch
Q psy2356         392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA  466 (529)
Q Consensus       392 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  466 (529)
                      |+..|+.+++++|+++|+++                   |     +.+|||+|+++|+.++|++|+++||+++..
T Consensus       280 A~~~g~~~iv~~Ll~~GAd~-------------------n-----~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          280 AVELKLKKIAELLCKRGAST-------------------D-----CGDLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HHHTTCHHHHHHHHTTSCSS-------------------T-----TCCHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             HHHcCCHHHHHHHHHCCCCC-------------------C-----CCCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            67777777777777765543                   3     346899999999999999999999988753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.5e-43  Score=331.28  Aligned_cols=289  Identities=24%  Similarity=0.268  Sum_probs=255.9

Q ss_pred             cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHH
Q psy2356         155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK-SGFTPLHIASHYGNEGVANILL  233 (529)
Q Consensus       155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll  233 (529)
                      .|+|+.|++.|+.++|++|++.|+                          +++.++. .|.||||+|+..|+.+++++|+
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Ga--------------------------dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll   79 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGA--------------------------NVNFQEEEGGWTPLHNAVQMSREDIVELLL   79 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTC--------------------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCC--------------------------CCCccCCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            468899999999999999996554                          4555554 5899999999999999999999


Q ss_pred             hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc-----
Q psy2356         234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDAR-----  308 (529)
Q Consensus       234 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-----  308 (529)
                      ++|++++..+..+.++++.++..+....+..+++.+.+++..+..|.||+|+|+..|+.+++++|+++|++++..     
T Consensus        80 ~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~  159 (337)
T 4g8k_A           80 RHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE  159 (337)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-
T ss_pred             HcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987654     


Q ss_pred             -----cccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchh----HHHHhhhhhhHHHHhhcCC
Q psy2356         309 -----AREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYIS----VEESLKGVTETLIIAKGDG  379 (529)
Q Consensus       309 -----~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~----~~~~l~~~~~~~~~~~~~~  379 (529)
                           +..|.||||+|+..|+.+++++|+...+.+++..+..|.++++.++..+...    ++++|      +....+.+
T Consensus       160 ~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL------l~~gad~n  233 (337)
T 4g8k_A          160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL------LDHGADVN  233 (337)
T ss_dssp             ----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH------HHTTCCTT
T ss_pred             ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHH------HHCCCCCC
Confidence                 4468999999999999999999998888999999999999999988766543    44554      11223447


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2356         380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH  459 (529)
Q Consensus       380 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  459 (529)
                      ..+..|.||||+|+..|+.+++++|++.                  .|++++.+|..|+||||+|++.|+.++|++|+++
T Consensus       234 ~~d~~g~t~L~~a~~~~~~~~v~~Ll~~------------------~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          234 VRGERGKTPLILAVEKKHLGLVQRLLEQ------------------EHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             CCCGGGCCHHHHHHHTTCHHHHHHHHTS------------------TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHhhhhHHHHHHHHh------------------cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            7888999999999999999999998874                  3678899999999999999999999999999999


Q ss_pred             CCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhh
Q psy2356         460 GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLII  498 (529)
Q Consensus       460 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~  498 (529)
                      |++++.     .+||++|++.|+.++|++|+++++++.+
T Consensus       296 GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          296 GASTDC-----GDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             SCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             CCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            999875     4699999999999999999999998764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.5e-43  Score=331.80  Aligned_cols=316  Identities=26%  Similarity=0.306  Sum_probs=198.2

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKN-NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      .|.|+||.||+.|+.+.|+.++.. +.+++..|..|.||||+|+..|+.++|++|+++|++++.++..|.|         
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t---------   93 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV---------   93 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC---------
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc---------
Confidence            578999999999999999999975 8899999999999999999999999999999999999887766554         


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCC----CC
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRG----KV  153 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~----~~  153 (529)
                                       |||+|+..|+.+++++|++++.+    +..|.|||++|+..|+.+++++|++++.+.    ..
T Consensus        94 -----------------~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  156 (351)
T 3utm_A           94 -----------------PLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH  156 (351)
T ss_dssp             -----------------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             -----------------HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence                             55567889999999999999765    566788888888888888888888765432    23


Q ss_pred             CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356         154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL  233 (529)
Q Consensus       154 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  233 (529)
                      +.++++.++..+..+.+.+...                                      ..++..++..++.+.++.++
T Consensus       157 g~~~l~~a~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~l  198 (351)
T 3utm_A          157 GKSAVDMAPTPELRERLTYEFK--------------------------------------GHSLLQAAREADLAKVKKTL  198 (351)
T ss_dssp             SCCHHHHCSSHHHHHHHHHHHH--------------------------------------HHHHHHHHHTTCHHHHHHHT
T ss_pred             CCcchHHHhhhhhHHHHHhhhc--------------------------------------ccHHHHHHHhccHHHHHHHH
Confidence            3455555555444444444332                                      13444455555555555555


Q ss_pred             hCCCCCcccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccc
Q psy2356         234 DKRADVNFSAKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR  310 (529)
Q Consensus       234 ~~g~~~~~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  310 (529)
                      ..+......+..+.||||+|+..   +..+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus       199 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~  278 (351)
T 3utm_A          199 ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS  278 (351)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            44443333444455555555555   334455555555555555555555555555555555555555555554444333


Q ss_pred             cCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHH
Q psy2356         311 EGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLH  390 (529)
Q Consensus       311 ~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~  390 (529)
                                                                                               .|.||||
T Consensus       279 -------------------------------------------------------------------------~g~t~L~  285 (351)
T 3utm_A          279 -------------------------------------------------------------------------LGQTALH  285 (351)
T ss_dssp             -------------------------------------------------------------------------TSCCHHH
T ss_pred             -------------------------------------------------------------------------CCCCHHH
Confidence                                                                                     3445555


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcC
Q psy2356         391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEG  470 (529)
Q Consensus       391 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  470 (529)
                      +|+..|+.+++++|+++                   |++++.++..|+||+++|    ..+++++|.+.+..   ....+
T Consensus       286 ~A~~~~~~~~v~~Ll~~-------------------gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~  339 (351)
T 3utm_A          286 RAALAGHLQTCRLLLSY-------------------GSDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDV  339 (351)
T ss_dssp             HHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHS----CHHHHHHHHHC-----------
T ss_pred             HHHHcCcHHHHHHHHHc-------------------CCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcc
Confidence            55555655555555554                   445566777777777776    45677777776432   23456


Q ss_pred             CCHHHHHHHhC
Q psy2356         471 HTALSIAQKLG  481 (529)
Q Consensus       471 ~t~l~~A~~~~  481 (529)
                      .+++..|++.|
T Consensus       340 ~~~l~~A~~~g  350 (351)
T 3utm_A          340 DYRLLEASKAG  350 (351)
T ss_dssp             -----------
T ss_pred             eeehhhhhccC
Confidence            66777777665

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-42  Score=318.34  Aligned_cols=255  Identities=26%  Similarity=0.339  Sum_probs=170.5

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhc
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTA-NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG   80 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~   80 (529)
                      .+|+|+|+.||+.|++++|++|++.|.+++.. +..|+||||+|+..|+.+++++|+++|++++..+..|.         
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~---------   73 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA---------   73 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC---------
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC---------
Confidence            36899999999999999999999999999977 88899999999999999999999999999987665544         


Q ss_pred             CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCC---
Q psy2356          81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKV---  153 (529)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~---  153 (529)
                                       |||++|+..|+.+++++|++++.+    +..|.|||++|+..|+.+++++|++.+.+...   
T Consensus        74 -----------------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  136 (285)
T 1wdy_A           74 -----------------TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK  136 (285)
T ss_dssp             -----------------CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             -----------------CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccc
Confidence                             556677889999999999999766    66788999999999999999999988765332   


Q ss_pred             -----------CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHH
Q psy2356         154 -----------RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH  222 (529)
Q Consensus       154 -----------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~  222 (529)
                                 +.++|+.|+..++.+++++|++                         ..+.+++..+..|.||||+|+.
T Consensus       137 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------------------------~~~~~~~~~~~~g~t~l~~a~~  191 (285)
T 1wdy_A          137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLD-------------------------EMGADVNACDNMGRNALIHALL  191 (285)
T ss_dssp             CCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH-------------------------TSCCCTTCCCTTSCCHHHHHHH
T ss_pred             cHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH-------------------------hcCCCCCccCCCCCCHHHHHHH
Confidence                       3344444444444444444443                         1123333344444444444444


Q ss_pred             cCC----HHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy2356         223 YGN----EGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ-NDANPDIPTVRGETPLHLAARANQTDIIRI  297 (529)
Q Consensus       223 ~~~----~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~  297 (529)
                      .++    .+++++|+++|++++..+..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|++.|+.+++++
T Consensus       192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~  271 (285)
T 1wdy_A          192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHH
Confidence            444    444444444444444444444444444444444444444444 344444444444444444444444444444


Q ss_pred             HHHCCCCccc
Q psy2356         298 LLRNGAQVDA  307 (529)
Q Consensus       298 Ll~~g~~~~~  307 (529)
                      |+++|++++.
T Consensus       272 Ll~~Ga~~~~  281 (285)
T 1wdy_A          272 LCKRGASTDC  281 (285)
T ss_dssp             HHHHSSCSCC
T ss_pred             HHHcCCCCCc
Confidence            4444444443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.4e-42  Score=313.67  Aligned_cols=262  Identities=26%  Similarity=0.327  Sum_probs=184.2

Q ss_pred             cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356         155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT-SKSGFTPLHIASHYGNEGVANILL  233 (529)
Q Consensus       155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~t~l~~A~~~~~~~~v~~Ll  233 (529)
                      .++|+.|+..|+.+++++|++.|.+                          ++.. +..|.||||+|+..|+.+++++|+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~--------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll   59 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGAN--------------------------VNFQEEEGGWTPLHNAVQMSREDIVELLL   59 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCC--------------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCC--------------------------cccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3566666666666666666654432                          3333 445667777777777777777777


Q ss_pred             hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc-----
Q psy2356         234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDAR-----  308 (529)
Q Consensus       234 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-----  308 (529)
                      ++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..     
T Consensus        60 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~  139 (285)
T 1wdy_A           60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE  139 (285)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH
Confidence            777777766677777777777777777777777777777776777777777777777777777777777666655     


Q ss_pred             -----cccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCC
Q psy2356         309 -----AREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHK  383 (529)
Q Consensus       309 -----~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  383 (529)
                           +..|.||||+|+..|+.+++++|++..+.++                                       +..+.
T Consensus       140 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------------------------------------~~~~~  180 (285)
T 1wdy_A          140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV---------------------------------------NACDN  180 (285)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT---------------------------------------TCCCT
T ss_pred             HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC---------------------------------------CccCC
Confidence                 3444455555555555555555544333333                                       44455


Q ss_pred             CCchHHHHHHHcCC----HHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHh-
Q psy2356         384 NGLTPLHLCAQEDR----VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE-  458 (529)
Q Consensus       384 ~g~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-  458 (529)
                      .|.||||+|+..++    .+++++|++                   +|++++.++..|.||||+|+..|+.+++++|++ 
T Consensus       181 ~g~t~l~~a~~~~~~~~~~~i~~~Ll~-------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  241 (285)
T 1wdy_A          181 MGRNALIHALLSSDDSDVEAITHLLLD-------------------HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             TSCCHHHHHHHCSCTTTHHHHHHHHHH-------------------TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             CCCCHHHHHHHccccchHHHHHHHHHH-------------------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            66677777777766    555555554                   466778888889999999999999999999998 


Q ss_pred             CCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhcc
Q psy2356         459 HGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAK  500 (529)
Q Consensus       459 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  500 (529)
                      +|++++.+|..|.|||++|++.|+.+++++|+++++++...+
T Consensus       242 ~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            799999999999999999999999999999999998877543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-43  Score=334.75  Aligned_cols=318  Identities=20%  Similarity=0.223  Sum_probs=189.4

Q ss_pred             CHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHHHhcc
Q psy2356          98 TPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVS  177 (529)
Q Consensus        98 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  177 (529)
                      .+|..|+..|+.+.+..++++...-....+++.-+...|+.+++++++... .+..+.|+||.|+..+. +++++|+.  
T Consensus        39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~t~L~~Aa~~~~-~~~~~L~~--  114 (373)
T 2fo1_E           39 HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEPESPIKLHTEAAGSY-AITEPITR--  114 (373)
T ss_dssp             --------------------------------------------------------CCCHHHHHHHSSS-CCCSCCST--
T ss_pred             cccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccC-CCCCCccHHHHHhcCCc-hHHHHhcc--
Confidence            456666677777777777776554333344555666667777777766543 34455677777777443 44444332  


Q ss_pred             CCCCCCcccccccCCchhhHHHHhCCCCCCcCC-CCCCCHHHHHHHcCCHHHHHHHH--------hCCCCCcccCCCCCc
Q psy2356         178 CTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS-KSGFTPLHIASHYGNEGVANILL--------DKRADVNFSAKSGLT  248 (529)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~Ll--------~~g~~~~~~~~~~~~  248 (529)
                                                .+++..+ ..|.||||+|+..|+.+++++|+        +.|++++..+..|.|
T Consensus       115 --------------------------~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~T  168 (373)
T 2fo1_E          115 --------------------------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT  168 (373)
T ss_dssp             --------------------------TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC
T ss_pred             --------------------------ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence                                      2334444 46777777777777766665554        566666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCcccccccCCcHHHHHHHcC--
Q psy2356         249 PLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNG---AQVDARAREGHTALSIAQKLG--  323 (529)
Q Consensus       249 ~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~a~~~~--  323 (529)
                      |||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++   ++++..+..|.||||+|+..+  
T Consensus       169 pL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~  248 (373)
T 2fo1_E          169 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR  248 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred             HHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCc
Confidence            666666666666666666666666666666666666666666666666666665   566666666666666666665  


Q ss_pred             -ChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHH
Q psy2356         324 -YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAE  402 (529)
Q Consensus       324 -~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  402 (529)
                       +.+++++|++.. .+++..+                               .......+..|.||||+|+..|+.++++
T Consensus       249 ~~~~~v~~Ll~~g-~~~~~~~-------------------------------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~  296 (373)
T 2fo1_E          249 DQVASAKLLVEKG-AKVDYDG-------------------------------AARKDSEKYKGRTALHYAAQVSNMPIVK  296 (373)
T ss_dssp             THHHHHHHHHHHT-CCSSCCS-------------------------------GGGTSSSSCCCCCTHHHHHSSCCHHHHH
T ss_pred             chHHHHHHHHHCC-CCccccc-------------------------------ccccCcccccCCCHHHHHHHhCCHHHHH
Confidence             566666665432 1111110                               0011345678999999999999999999


Q ss_pred             HHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCC
Q psy2356         403 LLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY  482 (529)
Q Consensus       403 ~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  482 (529)
                      +|++++                  |++++.++..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+
T Consensus       297 ~Ll~~~------------------~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          297 YLVGEK------------------GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             HHHHHS------------------CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             HHHHhc------------------CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence            998753                  46788999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHhhcccch
Q psy2356         483 ISVEESLKGVTET  495 (529)
Q Consensus       483 ~~~~~~L~~~~~~  495 (529)
                      .+++++|++++++
T Consensus       359 ~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          359 HNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHHHTTC--
T ss_pred             HHHHHHHHhcCcc
Confidence            9999999998764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.7e-41  Score=321.51  Aligned_cols=293  Identities=26%  Similarity=0.279  Sum_probs=195.0

Q ss_pred             cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy2356         155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD  234 (529)
Q Consensus       155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  234 (529)
                      .++|+.|+..|+.+.++.++.                         ..+.+++..+..|.||||+|+..|+.+++++|++
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~-------------------------~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   79 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLT-------------------------PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ   79 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCC-------------------------TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHH-------------------------hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            356777777777777777664                         4566778888999999999999999999999999


Q ss_pred             CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCc
Q psy2356         235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHT  314 (529)
Q Consensus       235 ~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  314 (529)
                      +|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.+
T Consensus        80 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~  159 (351)
T 3utm_A           80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS  159 (351)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHH
Q psy2356         315 ALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQ  394 (529)
Q Consensus       315 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  394 (529)
                      |+++|+..+..+.+.+....             .++..++..+..+.+..+....      ......+..|.||||+|+.
T Consensus       160 ~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~t~L~~A~~  220 (351)
T 3utm_A          160 AVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALE------IINFKQPQSHETALHCAVA  220 (351)
T ss_dssp             HHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTC------CTTCCCTTTCCCHHHHHHH
T ss_pred             chHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhh------cccccCCCCCCCHHHHHHH
Confidence            99887666555555554321             2333444444444433331110      0112233344455555544


Q ss_pred             cC---CHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCC
Q psy2356         395 ED---RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH  471 (529)
Q Consensus       395 ~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  471 (529)
                      .+   +.+++++|++                   .|++++.++..|+||||+|+.+|+.++|++|+++|++++.+|..|.
T Consensus       221 ~~~~~~~~~~~~Ll~-------------------~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~  281 (351)
T 3utm_A          221 SLHPKRKQVAELLLR-------------------KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ  281 (351)
T ss_dssp             CCSTTHHHHHHHHHH-------------------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HhCccHHHHHHHHHH-------------------cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            42   2233333332                   2333344444444444444444444444444444444444444444


Q ss_pred             CHHHHHHHhCCchHHHHhhcccchhhhccCCCCccccch
Q psy2356         472 TALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVA  510 (529)
Q Consensus       472 t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  510 (529)
                      ||||+|+..|+.+++++|+++++++.+.+..+++.....
T Consensus       282 t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          282 TALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence            444444444444444444444444444444444444333

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.8e-42  Score=325.39  Aligned_cols=283  Identities=19%  Similarity=0.245  Sum_probs=205.1

Q ss_pred             HHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCC---CCCCcCHHHHHhhCCChHHHHHHHhccCC
Q psy2356         103 AMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTR---GKVRLPALHIAAKKDDTKAAKLLLEVSCT  179 (529)
Q Consensus       103 A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  179 (529)
                      +...|+.+++++++... .+..|.||||.|+..+. +++++|+.....   ...+.|+||+|+..|+.+++++|+..   
T Consensus        73 ~~~~g~~~~~~~~~~~~-~~~~g~t~L~~Aa~~~~-~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~---  147 (373)
T 2fo1_E           73 NDFLGDFNHTNLQIPTE-PEPESPIKLHTEAAGSY-AITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH---  147 (373)
T ss_dssp             ----------------------CCCHHHHHHHSSS-CCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHH---
T ss_pred             CCccccccccccccccC-CCCCCccHHHHHhcCCc-hHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHH---
Confidence            34445555555554432 23445566666655332 455555443211   23455666666666666666666531   


Q ss_pred             CCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCH
Q psy2356         180 VDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM  259 (529)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~  259 (529)
                                     ..+.+++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus       148 ---------------~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~  212 (373)
T 2fo1_E          148 ---------------EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF  212 (373)
T ss_dssp             ---------------HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCH
T ss_pred             ---------------HHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCH
Confidence                           23455678888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCC---CCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCccc--------ccccCCcHHHHHHHcCCh
Q psy2356         260 NIVIYLLQND---ANPDIPTVRGETPLHLAARAN---QTDIIRILLRNGAQVDA--------RAREGHTALSIAQKLGYI  325 (529)
Q Consensus       260 ~~v~~Ll~~g---~~~~~~~~~~~t~l~~a~~~~---~~~~~~~Ll~~g~~~~~--------~~~~g~t~l~~a~~~~~~  325 (529)
                      +++++|++.+   .+++..+..|.||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.
T Consensus       213 ~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  292 (373)
T 2fo1_E          213 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM  292 (373)
T ss_dssp             HHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH
T ss_pred             HHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCH
Confidence            9999999998   799999999999999999998   89999999999999876        344566666666666666


Q ss_pred             hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2356         326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL  405 (529)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  405 (529)
                      +++++|++..+.++                                       +..+..|.||||+|+..|+.+++++|+
T Consensus       293 ~~v~~Ll~~~~~~~---------------------------------------n~~d~~g~TpL~~A~~~g~~~iv~~Ll  333 (373)
T 2fo1_E          293 PIVKYLVGEKGSNK---------------------------------------DKQDEDGKTPIMLAAQEGRIEVVMYLI  333 (373)
T ss_dssp             HHHHHHHHHSCCCT---------------------------------------TCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCc---------------------------------------cCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            66666654433333                                       445667888888888888888888888


Q ss_pred             hcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q psy2356         406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV  463 (529)
Q Consensus       406 ~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  463 (529)
                      ++                   |++++.+|..|+|||++|+.+|+.++|++|+++|++.
T Consensus       334 ~~-------------------gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          334 QQ-------------------GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HT-------------------TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             Hc-------------------CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            76                   5667888999999999999999999999999998763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-40  Score=302.29  Aligned_cols=229  Identities=23%  Similarity=0.279  Sum_probs=200.5

Q ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy2356         206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHL  285 (529)
Q Consensus       206 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  285 (529)
                      .+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~  131 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN  131 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356         286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL  365 (529)
Q Consensus       286 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  365 (529)
                      |+..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|++..                              
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g------------------------------  180 (285)
T 3d9h_A          132 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG------------------------------  180 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTT------------------------------
T ss_pred             HHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC------------------------------
Confidence            999999999999999999987544 4888999998888888888886532                              


Q ss_pred             hhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHH
Q psy2356         366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSA  445 (529)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~  445 (529)
                                .+.+..+..|.||||+|+..|+.+++++|+++|++                   ++ .+..|.||||+|+
T Consensus       181 ----------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------------------~~-~~~~g~t~L~~A~  230 (285)
T 3d9h_A          181 ----------GNIDHKISHLGTPLYLACENQQRACVKKLLESGAD-------------------VN-QGKGQDSPLHAVV  230 (285)
T ss_dssp             ----------CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-------------------TT-CCBTTBCHHHHHH
T ss_pred             ----------CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-------------------CC-CCCCCCCHHHHHH
Confidence                      12244566788999999999999999988887554                   45 3667999999999


Q ss_pred             HcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcc-cchhh
Q psy2356         446 SEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV-TETLI  497 (529)
Q Consensus       446 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-~~~~~  497 (529)
                      ..|+.+++++|+++|++++.+|..|.|||++|+  ++.+++++|+++ +.+++
T Consensus       231 ~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          231 RTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            999999999999999999999999999999999  567999999998 55555

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-40  Score=301.43  Aligned_cols=255  Identities=22%  Similarity=0.245  Sum_probs=191.7

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcC-----------CCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNN-----------VDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKG   70 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~-----------~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~   70 (529)
                      +.|.|+||+||..|+.+.+..++..+           ..++..+..|+||||+|+..|+.++|++|++.|++++.++..|
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g   92 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH   92 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            57899999999999988888866532           2246678899999999999999999999999999998766655


Q ss_pred             CchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHh
Q psy2356          71 NTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLE  146 (529)
Q Consensus        71 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~  146 (529)
                      .                          |||++|+..|+.+++++|++.+.+    +..|.|||++|+..|+.+++++|++
T Consensus        93 ~--------------------------t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  146 (285)
T 3d9h_A           93 V--------------------------SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ  146 (285)
T ss_dssp             C--------------------------CHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             C--------------------------CHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHH
Confidence            4                          555567889999999999998765    6677888888888888888877776


Q ss_pred             cCCCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCH
Q psy2356         147 NDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNE  226 (529)
Q Consensus       147 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~  226 (529)
                      .+.+.                                                       +. +..|.||||+|+..|+.
T Consensus       147 ~g~~~-------------------------------------------------------~~-~~~g~t~L~~A~~~g~~  170 (285)
T 3d9h_A          147 HGASV-------------------------------------------------------QP-ESDLASPIHEAARRGHV  170 (285)
T ss_dssp             TTCCS-------------------------------------------------------SC-SCTTSCHHHHHHHHTCH
T ss_pred             CCCCC-------------------------------------------------------CC-CCCCCCHHHHHHHcCCH
Confidence            54321                                                       11 22478999999999999


Q ss_pred             HHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc
Q psy2356         227 GVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD  306 (529)
Q Consensus       227 ~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  306 (529)
                      +++++|++.|++++..+..|.|||++|+..|+.+++++|++.|++++. +..|.||||+|+..++.+++++|+++|++++
T Consensus       171 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  249 (285)
T 3d9h_A          171 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQ  249 (285)
T ss_dssp             HHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            999999999999999999999999999999999999999999999985 7889999999999999999999999999999


Q ss_pred             cccccCCcHHHHHHHcCChhHHHHhhhhccccccc
Q psy2356         307 ARAREGHTALSIAQKLGYISVEESLGAAERSQLKK  341 (529)
Q Consensus       307 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  341 (529)
                      .+|..|.||+++|+  ++.+++++|++.....+..
T Consensus       250 ~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          250 AKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             CCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             CcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence            99999999999998  5578999998876655543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.2e-40  Score=294.55  Aligned_cols=234  Identities=30%  Similarity=0.370  Sum_probs=143.2

Q ss_pred             CCCcCCCCCCCHHHHHHHcC-------------CHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy2356         205 NPDVTSKSGFTPLHIASHYG-------------NEGVANILLDKRADVNF-SAKSGLTPLHVASFMGCMNIVIYLLQNDA  270 (529)
Q Consensus       205 ~~~~~~~~~~t~l~~A~~~~-------------~~~~v~~Ll~~g~~~~~-~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~  270 (529)
                      +++.++..|.||||+|+..|             +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            46677778888888888876             55666666666665533 35556666666666666666666666666


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcH
Q psy2356         271 NPDIPTVRGETPLHLAARANQTDIIRILLRNGA-QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTA  349 (529)
Q Consensus       271 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (529)
                      +++..+..|.||||+|+..|+.+++++|+++|. +++..+..|.||||+|+..|+.+++++|++.               
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------  146 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS---------------  146 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT---------------
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc---------------
Confidence            666666666666666666666666666666554 5555555555555555555555555555432               


Q ss_pred             HHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCC
Q psy2356         350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAK  429 (529)
Q Consensus       350 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~  429 (529)
                                               ..+.+..+..|.||||+|+..|+.+++++|+++                   |++
T Consensus       147 -------------------------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------ga~  182 (253)
T 1yyh_A          147 -------------------------HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-------------------GAN  182 (253)
T ss_dssp             -------------------------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-------------------TCC
T ss_pred             -------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCC
Confidence                                     122345667789999999999999888888876                   556


Q ss_pred             CCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       430 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.|+.+|+++|........
T Consensus       183 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~~  250 (253)
T 1yyh_A          183 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH  250 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC------
T ss_pred             CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhcc
Confidence            68888899999999999999999999999999999999999999999999999999999998876554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.5e-40  Score=314.39  Aligned_cols=245  Identities=21%  Similarity=0.290  Sum_probs=146.1

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      .+|.||||.||..|+.++|++|++.|++++..|..|.||||+|+..|+.++|++|+++|++.+..               
T Consensus        18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---------------   82 (364)
T 3ljn_A           18 DENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW---------------   82 (364)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB---------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc---------------
Confidence            46899999999999999999999999999999999999999999999999999999999966532               


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHH
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIA  161 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a  161 (529)
                                   .|.|||++|+..|+.+++++|++.+....  ..+-..........+..  +.....+..+.|+|++|
T Consensus        83 -------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~g~t~L~~A  145 (364)
T 3ljn_A           83 -------------HGQKPIHLAVMANKTDLVVALVEGAKERG--QMPESLLNECDEREVNE--IGSHVKHCKGQTALHWC  145 (364)
T ss_dssp             -------------TTBCHHHHHHHTTCHHHHHHHHHHHHHHT--CCHHHHHTCCCCCCEEE--ETTEEEEESCCCHHHHH
T ss_pred             -------------CCCCHHHHHHHcCCHHHHHHHHHhccccC--CCHHHHHhhcchHhhhh--hccccCCCCCCCHHHHH
Confidence                         25677778899999999999998732100  01100000000000000  00000111233344444


Q ss_pred             hhCC--ChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-
Q psy2356         162 AKKD--DTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD-  238 (529)
Q Consensus       162 ~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~-  238 (529)
                      +..|  +.+++++|++.                          |.+++..+..|.||||+|+..|+.+++++|+++|++ 
T Consensus       146 ~~~g~~~~~~v~~Ll~~--------------------------ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  199 (364)
T 3ljn_A          146 VGLGPEYLEMIKILVQL--------------------------GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK  199 (364)
T ss_dssp             HHSCGGGHHHHHHHHHH--------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS
T ss_pred             HHcCCchHHHHHHHHHc--------------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Confidence            4443  33444444422                          223334444455555555555555555555555554 


Q ss_pred             ----CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy2356         239 ----VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ  304 (529)
Q Consensus       239 ----~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  304 (529)
                          ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       200 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred             ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence                555555555555555555555555555555555555555555555555555555555555555443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.2e-39  Score=296.91  Aligned_cols=260  Identities=22%  Similarity=0.239  Sum_probs=190.2

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHH
Q psy2356           1 SGEGHTSFLRAARAGHLDKIIEHLKNNVD---INTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIA   77 (529)
Q Consensus         1 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a   77 (529)
                      +++|.||||.||..|+.++|++|++.|.+   ++..+..|+||||+|+..|+.++|++|+++|++++.++..|.|     
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-----   80 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT-----   80 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC-----
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-----
Confidence            46899999999999999999999999888   7889999999999999999999999999999999887766555     


Q ss_pred             hhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356          78 SLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA  157 (529)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  157 (529)
                                           ||++|+..|+.+++++|+++++..............            .........++
T Consensus        81 ---------------------pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~  127 (282)
T 1oy3_D           81 ---------------------ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS------------QDCTPDTSHAP  127 (282)
T ss_dssp             ---------------------HHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------
T ss_pred             ---------------------HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcc------------cccCcchhcch
Confidence                                 555667899999999999998774332221111100            00111122233


Q ss_pred             HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy2356         158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA  237 (529)
Q Consensus       158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  237 (529)
                      +..++..+.......                         .+...+.+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus       128 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  182 (282)
T 1oy3_D          128 AAVDSQPNPENEEEP-------------------------RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA  182 (282)
T ss_dssp             -----------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hhhccccccchhhhh-------------------------hhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence            333333322221111                         1123445667788899999999999999999999999999


Q ss_pred             CCcccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHH
Q psy2356         238 DVNFSAKS-GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL  316 (529)
Q Consensus       238 ~~~~~~~~-~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  316 (529)
                      +++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||+
T Consensus       183 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  262 (282)
T 1oy3_D          183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC  262 (282)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------
T ss_pred             CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccc
Confidence            99998854 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcC
Q psy2356         317 SIAQKLG  323 (529)
Q Consensus       317 ~~a~~~~  323 (529)
                      ++|....
T Consensus       263 ~~a~~~~  269 (282)
T 1oy3_D          263 SSSGSDS  269 (282)
T ss_dssp             -------
T ss_pred             cccCCcc
Confidence            9987654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.5e-39  Score=287.91  Aligned_cols=231  Identities=28%  Similarity=0.389  Sum_probs=165.8

Q ss_pred             CCCCCCCCCCChHHHHHHHcC-------------ChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccccC
Q psy2356          28 VDINTANANGLNALHLASKDG-------------HLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQG   94 (529)
Q Consensus        28 ~~~~~~~~~g~t~L~~A~~~g-------------~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~   94 (529)
                      +|+|.+|..|+||||+|+..|             +.+++++|++.|++++..                         .+.
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~-------------------------~d~   55 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-------------------------TDR   55 (253)
T ss_dssp             ---------------------------------------------------C-------------------------CCT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccc-------------------------cCC
Confidence            367888889999999999877             899999999999887532                         233


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHH
Q psy2356          95 DGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA  170 (529)
Q Consensus        95 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~  170 (529)
                      .|.||||+|+..|+.+++++|++.+++    +..|.|||++|+..|+.+++++|++.+.                     
T Consensus        56 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~---------------------  114 (253)
T 1yyh_A           56 TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA---------------------  114 (253)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT---------------------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---------------------
Confidence            455667777889999999999988765    5667788888888777777777776432                     


Q ss_pred             HHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHH
Q psy2356         171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL  250 (529)
Q Consensus       171 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l  250 (529)
                                                       .+++..+..|.||||+|+..++.+++++|++.|++++..+..|.|||
T Consensus       115 ---------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L  161 (253)
T 1yyh_A          115 ---------------------------------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL  161 (253)
T ss_dssp             ---------------------------------SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             ---------------------------------CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence                                             13455677889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHH
Q psy2356         251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEES  330 (529)
Q Consensus       251 ~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  330 (529)
                      |+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..|+.+++++
T Consensus       162 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~  241 (253)
T 1yyh_A          162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL  241 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccc
Q psy2356         331 LGAAERS  337 (529)
Q Consensus       331 l~~~~~~  337 (529)
                      |....+.
T Consensus       242 l~~~~~~  248 (253)
T 1yyh_A          242 LDLEHHH  248 (253)
T ss_dssp             HHC----
T ss_pred             HHHHhhh
Confidence            9765543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4e-38  Score=280.44  Aligned_cols=228  Identities=26%  Similarity=0.345  Sum_probs=190.3

Q ss_pred             CCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356         205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLH  284 (529)
Q Consensus       205 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  284 (529)
                      +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.|++++..+..|.||||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            45667778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHCC-CCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHH
Q psy2356         285 LAARANQTDIIRILLRNG-AQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE  363 (529)
Q Consensus       285 ~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  363 (529)
                      +|+..|+.+++++|+++| .+++..+..|.||+|+|+..++.+++++|++.. .                          
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~--------------------------  135 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-S--------------------------  135 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C--------------------------
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-C--------------------------
Confidence            888888888888888887 777777788888888888888888888876532 1                          


Q ss_pred             HhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHH
Q psy2356         364 SLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL  443 (529)
Q Consensus       364 ~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~  443 (529)
                                   +.+..+..|.||||+|+..|+.+++++|+++                   |++++.++..|.||||+
T Consensus       136 -------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------------------g~~~~~~~~~g~t~L~~  183 (237)
T 3b7b_A          136 -------------DINIRDNEENICLHWAAFSGCVDIAEILLAA-------------------KCDLHAVNIHGDSPLHI  183 (237)
T ss_dssp             -------------CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT-------------------TCCTTCCCTTCCCHHHH
T ss_pred             -------------CCCccCCCCCCHHHHHHHCCCHHHHHHHHHc-------------------CCCCCCcCCCCCCHHHH
Confidence                         1234566788999999999999888888876                   45668888889999999


Q ss_pred             HHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhc
Q psy2356         444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG  491 (529)
Q Consensus       444 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  491 (529)
                      |+..|+.+++++|+++|++++.+|..|.|||++|+..++.+.+..+++
T Consensus       184 A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999866555544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.1e-38  Score=285.05  Aligned_cols=229  Identities=26%  Similarity=0.335  Sum_probs=187.0

Q ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy2356         207 DVTSKSGFTPLHIASHYGNEGVANILLD----KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP  282 (529)
Q Consensus       207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  282 (529)
                      +.++..|.||||+|+..|+.+++++|++    .|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            3466788889999999898888888886    788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHCCC----CcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCc
Q psy2356         283 LHLAARANQTDIIRILLRNGA----QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY  358 (529)
Q Consensus       283 l~~a~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  358 (529)
                      ||+|+..|+.+++++|++++.    +++..+..|.||||+|+..|+.+++++|++...                      
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------------------  140 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA----------------------  140 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----------------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC----------------------
Confidence            888888888888888888876    677777777788888887777777777755321                      


Q ss_pred             hhHHHHhhhhhhHHHHhhcCCCCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCC
Q psy2356         359 ISVEESLKGVTETLIIAKGDGEKH-KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAG  437 (529)
Q Consensus       359 ~~~~~~l~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g  437 (529)
                                        +.+..+ ..|.||||+|+..|+.+++++|+++                   |++++.++..|
T Consensus       141 ------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------g~~~~~~~~~g  183 (241)
T 1k1a_A          141 ------------------DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-------------------GANVNAQMYSG  183 (241)
T ss_dssp             ------------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCBCTTS
T ss_pred             ------------------CcccccccCCCcHHHHHHHcCCHHHHHHHHHc-------------------CCCCCCcCCCC
Confidence                              112233 5688999999999999988888876                   55668888899


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356         438 FTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE  494 (529)
Q Consensus       438 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  494 (529)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.++++.|.+.+.
T Consensus       184 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            999999999999999999999999999999999999999999999999999987654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.4e-38  Score=290.08  Aligned_cols=248  Identities=26%  Similarity=0.310  Sum_probs=146.3

Q ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356         207 DVTSKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL  283 (529)
Q Consensus       207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  283 (529)
                      +..+..|.||||+|+..|+.+++++|++.|++   ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            56788999999999999999999999999988   788889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCccccc-------------ccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHH
Q psy2356         284 HLAARANQTDIIRILLRNGAQVDARA-------------REGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL  350 (529)
Q Consensus       284 ~~a~~~~~~~~~~~Ll~~g~~~~~~~-------------~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  350 (529)
                      |+|+..|+.+++++|+++|++.....             ..+.++++.+...+.......++......++..+..|.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            99999999999999999987753322             12333444444433333333333333444444555555555


Q ss_pred             HHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCC
Q psy2356         351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAK  429 (529)
Q Consensus       351 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~  429 (529)
                      |+|+..|+.+++++|.+.      ..+.+..+. .|.||||+|+..|+.+++++|+++                   |++
T Consensus       163 ~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-------------------gad  217 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDA------GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-------------------GAD  217 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-------------------TCC
T ss_pred             HHHHHcCCHHHHHHHHHc------CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-------------------CCC
Confidence            555555555555544211      111122222 255555555555555444444443                   233


Q ss_pred             CCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHH
Q psy2356         430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK  479 (529)
Q Consensus       430 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  479 (529)
                      ++.++..|+||||+|+.+|+.+++++|+++|++++.+|..|.||+++|..
T Consensus       218 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            34444445555555555555555555555555555555555555555443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.4e-39  Score=307.57  Aligned_cols=271  Identities=20%  Similarity=0.216  Sum_probs=230.1

Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356         204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL  283 (529)
Q Consensus       204 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  283 (529)
                      .+.+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  ..|.|||
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L   88 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPI   88 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHH
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHH
Confidence            34456677889999999999999999999999999999999999999999999999999999999995554  5789999


Q ss_pred             HHHHHcCCHHHHHHHHHC----CCCccc-----------------ccccCCcHHHHHHHcC--ChhHHHHhhhhcccccc
Q psy2356         284 HLAARANQTDIIRILLRN----GAQVDA-----------------RAREGHTALSIAQKLG--YISVEESLGAAERSQLK  340 (529)
Q Consensus       284 ~~a~~~~~~~~~~~Ll~~----g~~~~~-----------------~~~~g~t~l~~a~~~~--~~~~~~~l~~~~~~~~~  340 (529)
                      |+|+..|+.+++++|+++    |++++.                 .+..|.||||+|+..|  +.+++++|++. +.+++
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~  167 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPT  167 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTT
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCc
Confidence            999999999999999998    888777                 8889999999999999  99999999887 67888


Q ss_pred             cCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHH
Q psy2356         341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA  420 (529)
Q Consensus       341 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  420 (529)
                      ..+..|.||||+|+..|+.+++++|.+..... .....+..+..|.||||+|+..|+.+++++|+++             
T Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------------  233 (364)
T 3ljn_A          168 AKDKADETPLMRAMEFRNREALDLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-------------  233 (364)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-------------
Confidence            99999999999999999999999993321100 0001456788899999999999999999888876             


Q ss_pred             HHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcc------------hhhcCCCHHHHHHHhCCchHHHH
Q psy2356         421 TTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH------------AAKEGHTALSIAQKLGYISVEES  488 (529)
Q Consensus       421 ~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------~~~~g~t~l~~A~~~~~~~~~~~  488 (529)
                            |+|++.++..|.||||+|+..|+.++|++|+++|++++.            .+..++|+++.|+..++.+.+..
T Consensus       234 ------gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~  307 (364)
T 3ljn_A          234 ------GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ  307 (364)
T ss_dssp             ------TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred             ------CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence                  556688888999999999999999999999999877533            56678999999999887777776


Q ss_pred             hhcccchhh
Q psy2356         489 LKGVTETLI  497 (529)
Q Consensus       489 L~~~~~~~~  497 (529)
                      |+....+..
T Consensus       308 ll~~~~~~~  316 (364)
T 3ljn_A          308 LLQEKLDEV  316 (364)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.7e-38  Score=282.47  Aligned_cols=227  Identities=24%  Similarity=0.335  Sum_probs=182.1

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHH
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLK----NNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIA   77 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a   77 (529)
                      ++|.||||.||..|+.++|++|++    .|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|     
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-----   81 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-----   81 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-----
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-----
Confidence            678999999999999999999987    68888988999999999999999999999999999888766544333     


Q ss_pred             hhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356          78 SLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA  157 (529)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  157 (529)
                                           ||++|+..|+.+++++|++.+...                                   
T Consensus        82 ---------------------~l~~A~~~~~~~~~~~Ll~~~~~~-----------------------------------  105 (241)
T 1k1a_A           82 ---------------------AAHLACEHRSPTCLRALLDSAAPG-----------------------------------  105 (241)
T ss_dssp             ---------------------HHHHHHHTTCHHHHHHHHHHSCTT-----------------------------------
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHcCCCc-----------------------------------
Confidence                                 344445566666666666554311                                   


Q ss_pred             HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy2356         158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA  237 (529)
Q Consensus       158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~  237 (529)
                                                                   +.+++..+..|.||||+|+..|+.+++++|++.|+
T Consensus       106 ---------------------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  140 (241)
T 1k1a_A          106 ---------------------------------------------TLDLEARNYDGLTALHVAVNTECQETVQLLLERGA  140 (241)
T ss_dssp             ---------------------------------------------SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ---------------------------------------------cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence                                                         11234455677888888888888888888888888


Q ss_pred             CCcccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHH
Q psy2356         238 DVNFSA-KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL  316 (529)
Q Consensus       238 ~~~~~~-~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  316 (529)
                      +++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+
T Consensus       141 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  220 (241)
T 1k1a_A          141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL  220 (241)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             CcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHH
Confidence            888877 7788899999888899999999988888888888888999999988999999999999988888888888898


Q ss_pred             HHHHHcCChhHHHHhhhh
Q psy2356         317 SIAQKLGYISVEESLGAA  334 (529)
Q Consensus       317 ~~a~~~~~~~~~~~l~~~  334 (529)
                      ++|+..|+.++++.|.++
T Consensus       221 ~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          221 MVARSRRVIDILRGKATR  238 (241)
T ss_dssp             TTCSSHHHHHHHTC----
T ss_pred             HHHHhcCcHHHHhhhccC
Confidence            888888888888888654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.3e-37  Score=277.17  Aligned_cols=126  Identities=28%  Similarity=0.490  Sum_probs=110.1

Q ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy2356         207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA  286 (529)
Q Consensus       207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  286 (529)
                      +..+..|.||||+|+..++.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|
T Consensus       105 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  184 (237)
T 3b7b_A          105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA  184 (237)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            44556778899999999999999999999999888888899999999999999999999999999998888899999999


Q ss_pred             HHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhh
Q psy2356         287 ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG  332 (529)
Q Consensus       287 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~  332 (529)
                      ++.++.+++++|+++|++++.++..|.||+++|+..++...+..+.
T Consensus       185 ~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988999999999998888886666553

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.4e-38  Score=277.19  Aligned_cols=226  Identities=24%  Similarity=0.272  Sum_probs=203.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356         212 SGFTPLHIASHYGNEGVANILLDKRAD-VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN  290 (529)
Q Consensus       212 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  290 (529)
                      .+.++|+.|+..|+.+.+++|++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence            467999999999999999999987654 5777889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhh
Q psy2356         291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTE  370 (529)
Q Consensus       291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  370 (529)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|++.. .                                 
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~---------------------------------  130 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-A---------------------------------  130 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C---------------------------------
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-C---------------------------------
Confidence            999999999999999999999999999999999999999996532 1                                 


Q ss_pred             HHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcH
Q psy2356         371 TLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA  450 (529)
Q Consensus       371 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~  450 (529)
                            +.+..+..|.||||+|+..|+.+++++|+++                   |++++.++..|+||||+|+..|+.
T Consensus       131 ------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~  185 (231)
T 3aji_A          131 ------NPDAKDHYDATAMHRAAAKGNLKMVHILLFY-------------------KASTNIQDTEGNTPLHLACDEERV  185 (231)
T ss_dssp             ------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-------------------TCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             ------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-------------------CCCccccCCCCCCHHHHHHHCCCH
Confidence                  1234456788999999999999888888876                   556688888999999999999999


Q ss_pred             HHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchh
Q psy2356         451 DMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETL  496 (529)
Q Consensus       451 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  496 (529)
                      +++++|+++|++++.+|..|.||+++|...++.+++++|+++++++
T Consensus       186 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          186 EEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            9999999999999999999999999999999999999999987754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=8e-39  Score=295.64  Aligned_cols=237  Identities=28%  Similarity=0.360  Sum_probs=204.1

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356         211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN  290 (529)
Q Consensus       211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  290 (529)
                      ..+.|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhh
Q psy2356         291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTE  370 (529)
Q Consensus       291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  370 (529)
                      +.+++++|+++|++++..+..|.||+++|+..++.+++++++...+.+++.....+.+++...+       ..++     
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-------~~~l-----  185 (299)
T 1s70_B          118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA-------RQWL-----  185 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH-------HHHH-----
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHH-------HHHH-----
Confidence            9999999999999999999999999999999999999999987766554433222222222111       1111     


Q ss_pred             HHHHh-hcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCc
Q psy2356         371 TLIIA-KGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH  449 (529)
Q Consensus       371 ~~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~  449 (529)
                        ... ......+..|.||||+|+..|+.+++++|+++                   |++++.++..|.||||+|+..|+
T Consensus       186 --~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------g~d~~~~d~~g~tpL~~A~~~~~  244 (299)
T 1s70_B          186 --NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-------------------RYDVNIKDYDGWTPLHAAAHWGK  244 (299)
T ss_dssp             --HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-------------------TCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             --hccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-------------------CCCCCCcCCCCCcHHHHHHhcCC
Confidence              111 11234567899999999999999999988886                   55668888899999999999999


Q ss_pred             HHHHHHHHhCCCCCcchhhcCCCHHHHHHHh
Q psy2356         450 ADMSAMLLEHGADVSHAAKEGHTALSIAQKL  480 (529)
Q Consensus       450 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  480 (529)
                      .++|++|+++|++++.+|..|.||+++|.+.
T Consensus       245 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          245 EEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            9999999999999999999999999999764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.5e-37  Score=271.46  Aligned_cols=221  Identities=26%  Similarity=0.384  Sum_probs=146.0

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNV-DINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      .+.|+||.||..|+++.++++++.+. .++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|         
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t---------   75 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS---------   75 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC---------
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCC---------
Confidence            57899999999999999999998754 46788999999999999999999999999999998876654443         


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHH
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIA  161 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a  161 (529)
                                       ||++|+..|+.+++++|++++.+                                        
T Consensus        76 -----------------~L~~A~~~~~~~~v~~Ll~~g~~----------------------------------------   98 (231)
T 3aji_A           76 -----------------PLHIAASAGXDEIVKALLVKGAH----------------------------------------   98 (231)
T ss_dssp             -----------------HHHHHHHHTCHHHHHHHHHTTCC----------------------------------------
T ss_pred             -----------------HHHHHHHcCHHHHHHHHHHcCCC----------------------------------------
Confidence                             44455667777777777766543                                        


Q ss_pred             hhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcc
Q psy2356         162 AKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNF  241 (529)
Q Consensus       162 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  241 (529)
                                                                  ++..+..|.||||+|+..++.+++++|++.|++++.
T Consensus        99 --------------------------------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  134 (231)
T 3aji_A           99 --------------------------------------------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA  134 (231)
T ss_dssp             --------------------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             --------------------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence                                                        112233445555555555555555555555555555


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHH
Q psy2356         242 SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK  321 (529)
Q Consensus       242 ~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~  321 (529)
                      .+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+.
T Consensus       135 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCChhHHHHhhh
Q psy2356         322 LGYISVEESLGA  333 (529)
Q Consensus       322 ~~~~~~~~~l~~  333 (529)
                      .++.+++++|.+
T Consensus       215 ~~~~~i~~lL~~  226 (231)
T 3aji_A          215 GLGLILKRLAEG  226 (231)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcc
Confidence            555555555543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=285.43  Aligned_cols=228  Identities=25%  Similarity=0.307  Sum_probs=165.9

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--------CcccCCCCCcHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCC
Q psy2356         209 TSKSGFTPLHIASHYGNEGVANILLDKRAD--------VNFSAKSGLTPLHVASFMGCM-NIVIYLLQNDANPDIPTVRG  279 (529)
Q Consensus       209 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~--------~~~~~~~~~~~l~~a~~~~~~-~~v~~Ll~~g~~~~~~~~~~  279 (529)
                      ++..+.++|+.|+..|+.++|++|++.|.+        ++..+..+.|||+.|+..+.. .++++|++.|++++..+..|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G   86 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG   86 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence            444567899999999999999999998875        345667788999999887765 47899999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCch
Q psy2356         280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI  359 (529)
Q Consensus       280 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  359 (529)
                      .||||+|+..|+.+++++|+++|++++..+..|.||++.|+..++.+++++|++.. .+                     
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~---------------------  144 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN-AK---------------------  144 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CC---------------------
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCC-CC---------------------
Confidence            99999999999999999999999999999999999999999999999999886532 22                     


Q ss_pred             hHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCC
Q psy2356         360 SVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT  439 (529)
Q Consensus       360 ~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t  439 (529)
                                        .+..+..|.||||+|+..|+.+++++|+++                   |+|+|.++..|+|
T Consensus       145 ------------------~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-------------------gadvn~~~~~g~t  187 (269)
T 4b93_B          145 ------------------PNKKDLSGNTPLIYACSGGHHELVALLLQH-------------------GASINASNNKGNT  187 (269)
T ss_dssp             ------------------SCCCCTTCCCHHHHHHHTTCGGGHHHHHHT-------------------TCCTTCBCTTSCB
T ss_pred             ------------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-------------------CCCCCccccCCCc
Confidence                              244566788888888888888888888776                   5567888889999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       440 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      |||+|+..|+.++|++|+++|+|++.+|..|+|||++|++.+  +++++|........
T Consensus       188 ~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~--~i~~lL~~l~~~~~  243 (269)
T 4b93_B          188 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS--KIMELLQVVPSCVA  243 (269)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC--HHHHHTTC------
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC--cHHHHHHHHHHhch
Confidence            999999999999999999999999999999999999998765  46666655444433

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.4e-37  Score=282.15  Aligned_cols=225  Identities=17%  Similarity=0.148  Sum_probs=191.9

Q ss_pred             CCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356         205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLH  284 (529)
Q Consensus       205 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  284 (529)
                      +++.++..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence            467788889999999999999999999999999888774  889999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCcccccccC-CcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHH
Q psy2356         285 LAARANQTDIIRILLRNGAQVDARAREG-HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE  363 (529)
Q Consensus       285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g-~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  363 (529)
                      +|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|++....                          
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------------  154 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--------------------------  154 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT--------------------------
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc--------------------------
Confidence            9999999999999999999999988888 7999999999999999988654321                          


Q ss_pred             HhhhhhhHHHHhhcCCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCH-H
Q psy2356         364 SLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP-L  441 (529)
Q Consensus       364 ~l~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~-L  441 (529)
                                      ..+. .|.||||+|+..|+.+++++|+++                   |++++.++..|+|| |
T Consensus       155 ----------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------gad~n~~~~~g~t~~L  199 (285)
T 3kea_A          155 ----------------TFDLAILLSCIHITIKNGHVDMMILLLDY-------------------MTSTNTNNSLLFIPDI  199 (285)
T ss_dssp             ----------------TCCCSTHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHTCTTCCCBCCTTH
T ss_pred             ----------------cccccCCccHHHHHHHcChHHHHHHHHHc-------------------CCCCCcccCCCCChHH
Confidence                            1122 677889999999988888888775                   45667888889897 9


Q ss_pred             HHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhc
Q psy2356         442 HLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIA  499 (529)
Q Consensus       442 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~  499 (529)
                      |+|+..|+.+++++|+++|++++..|.       .|+..|+.+++++|++++.++...
T Consensus       200 ~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          200 KLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             HHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCc
Confidence            999999999999999999999988773       557788999999999998877643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.8e-36  Score=268.42  Aligned_cols=232  Identities=25%  Similarity=0.297  Sum_probs=197.1

Q ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHH
Q psy2356         207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV-RGETPLHL  285 (529)
Q Consensus       207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~~~t~l~~  285 (529)
                      +..+..+.++|+.|+..|+.+++++|++.|++++..+..|.|||+.|+..|+.+++++|++.|.+++.... .|.||||+
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            34566788999999999999999999999999999999999999999999999999999999998876554 48999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356         286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL  365 (529)
Q Consensus       286 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  365 (529)
                      |+..|+.+++++|+++|++++..+..|.||+++|+..|+.+++++|++.. .++                          
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~--------------------------  135 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDV--------------------------  135 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCT--------------------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCc--------------------------
Confidence            99999999999999999999999999999999999999999999997542 222                          


Q ss_pred             hhhhhHHHHhhcCCCCCCCCchHHHHHHHcCC-HHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCccc-CCCCHHHH
Q psy2356         366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR-VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV-AGFTPLHL  443 (529)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~-~g~t~L~~  443 (529)
                                   +..+..|.||||+|+..++ .+++++|+++                   |++++..+. .|.||||+
T Consensus       136 -------------~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~-------------------~~~~~~~~~~~g~t~L~~  183 (240)
T 3eu9_A          136 -------------DMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-------------------NVSVNLGDKYHKNTALHW  183 (240)
T ss_dssp             -------------TCCCTTSCCHHHHHHHHCCSSTTHHHHHHT-------------------TCCTTCCCTTTCCCHHHH
T ss_pred             -------------cccCCCCCcHHHHHHHhCChHHHHHHHHhc-------------------CCCcchhhccCCCcHHHH
Confidence                         3345566777777775554 5666666655                   556677665 79999999


Q ss_pred             HHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       444 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      |+..|+.+++++|+++|++++..|..|.|||++|++.|+.+++++|++.+....
T Consensus       184 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            999999999999999999999999999999999999999999999999876543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=264.55  Aligned_cols=223  Identities=26%  Similarity=0.369  Sum_probs=139.8

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      +.|.|+|+.||+.|+++++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++...              
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------   72 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG--------------   72 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB--------------
T ss_pred             cccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc--------------
Confidence            568889999999999999999999998888888889999999999999999999999888776432              


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA  157 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  157 (529)
                                 +..+.|||++|+..|+.+++++|++.+.+    +..+.|||+.|+..|+.+++++|++.          
T Consensus        73 -----------~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~----------  131 (240)
T 3eu9_A           73 -----------GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK----------  131 (240)
T ss_dssp             -----------TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----------
T ss_pred             -----------CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc----------
Confidence                       22244555566666777777777666543    23333444444444443333333321          


Q ss_pred             HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCC-HHHHHHHHhCC
Q psy2356         158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGN-EGVANILLDKR  236 (529)
Q Consensus       158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~-~~~v~~Ll~~g  236 (529)
                                                                   +.+++..+..|.||||+|+..++ .+++++|++.|
T Consensus       132 ---------------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  166 (240)
T 3eu9_A          132 ---------------------------------------------GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN  166 (240)
T ss_dssp             ---------------------------------------------TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred             ---------------------------------------------CCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence                                                         22233344455566666554443 55555566666


Q ss_pred             CCCcccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy2356         237 ADVNFSAK-SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ  304 (529)
Q Consensus       237 ~~~~~~~~-~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  304 (529)
                      ++++..+. .|.||||.|+..|+.+++++|++.|++++..+..|.||+++|++.|+.+++++|++++.+
T Consensus       167 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            55555554 555566666666666666666655555555555556666666666666666666555543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.7e-36  Score=262.98  Aligned_cols=212  Identities=30%  Similarity=0.360  Sum_probs=147.3

Q ss_pred             CchhhHHHHhCCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy2356         192 NAATGGYLIKNEHNPDVT-SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA  270 (529)
Q Consensus       192 ~~~~~~~l~~~~~~~~~~-~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~  270 (529)
                      +.++++++++.+.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+.
T Consensus         3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   82 (223)
T 2f8y_A            3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA   82 (223)
T ss_dssp             --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred             cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            445556666666666554 6677788888888888888888888888777777777888888888888888888887765


Q ss_pred             -CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcH
Q psy2356         271 -NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTA  349 (529)
Q Consensus       271 -~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (529)
                       +++..+..|.||||+|+..++.+++++|+++|++++..+..|.||                                  
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~----------------------------------  128 (223)
T 2f8y_A           83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA----------------------------------  128 (223)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH----------------------------------
T ss_pred             CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcH----------------------------------
Confidence             677777777788888888888888888887777766655555444                                  


Q ss_pred             HHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCC
Q psy2356         350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAK  429 (529)
Q Consensus       350 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~  429 (529)
                                                             ||+|+..|+.+++++|+++                   |++
T Consensus       129 ---------------------------------------L~~A~~~~~~~~v~~Ll~~-------------------g~~  150 (223)
T 2f8y_A          129 ---------------------------------------LHWAAAVNNVDAAVVLLKN-------------------GAN  150 (223)
T ss_dssp             ---------------------------------------HHHHHHTTCHHHHHHHHHT-------------------TCC
T ss_pred             ---------------------------------------HHHHHHcCCHHHHHHHHHc-------------------CCC
Confidence                                                   4444455555555544443                   344


Q ss_pred             CCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccch
Q psy2356         430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTET  495 (529)
Q Consensus       430 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  495 (529)
                      ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.++.+++++|++++..
T Consensus       151 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          151 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            556666677777777777777777777777777777777777777777777777777777766554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6.6e-36  Score=264.47  Aligned_cols=221  Identities=23%  Similarity=0.291  Sum_probs=177.5

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           4 GHTSFLRAARAGHLDKIIEHLKNNVDIN-TANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      |+||||.||+.|+.++|++|++.+.++. ..+..|+||||+|+..|+.+++++|+++|++++...               
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------   66 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD---------------   66 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG---------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc---------------
Confidence            7899999999999999999999887754 488999999999999999999999999996654321               


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHh
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAA  162 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~  162 (529)
                              ..                             +..|.|||++|+..|+.+++++|++.+..            
T Consensus        67 --------~~-----------------------------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------   97 (228)
T 2dzn_A           67 --------YP-----------------------------DDSGWTPFHIACSVGNLEVVKSLYDRPLK------------   97 (228)
T ss_dssp             --------CC-----------------------------CTTSCCHHHHHHHHCCHHHHHHHHSSSSC------------
T ss_pred             --------cC-----------------------------CCCCCCHHHHHHHcCCHHHHHHHHhCCCC------------
Confidence                    01                             22334444444444444444444432210            


Q ss_pred             hCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccc
Q psy2356         163 KKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS  242 (529)
Q Consensus       163 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  242 (529)
                                                               .+++..+..|.||||+|+..++.+++++|+++|++++..
T Consensus        98 -----------------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  136 (228)
T 2dzn_A           98 -----------------------------------------PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK  136 (228)
T ss_dssp             -----------------------------------------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             -----------------------------------------cccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcccc
Confidence                                                     123445667889999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCcccccccCCcHHHHHH
Q psy2356         243 AKSGLTPLHVASFMGCMNIVIYLLQND-ANPDIPTVRGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQ  320 (529)
Q Consensus       243 ~~~~~~~l~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~  320 (529)
                      +..|.||||+|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|+ ++|++++..+..|.||+++|.
T Consensus       137 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence            999999999999999999999999998 999999999999999999999999999999 889999999999999999986


Q ss_pred             HcCChhHHHHhh
Q psy2356         321 KLGYISVEESLG  332 (529)
Q Consensus       321 ~~~~~~~~~~l~  332 (529)
                      ..   +++++|.
T Consensus       217 ~~---~~~~~l~  225 (228)
T 2dzn_A          217 NE---QVKKFFL  225 (228)
T ss_dssp             ST---THHHHHH
T ss_pred             HH---HHHHHHH
Confidence            54   4555553

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-37  Score=276.11  Aligned_cols=208  Identities=26%  Similarity=0.364  Sum_probs=107.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCC--------CCCCCCCCChHHHHHHHcCCh-hHHHHHHHCCCCCCCCCCCCCch
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVD--------INTANANGLNALHLASKDGHL-HVVTELLSRGANVDSATKKGNTA   73 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~--------~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~ga~~~~~~~~~~~~   73 (529)
                      ++.|+|+.||..|++++|++|++.|.+        ++..+..|.|||++|+..++. .++++|++.|++++.++..|.||
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~Tp   89 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSP   89 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCH
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            467999999999999999999998765        455677899999999988775 58899999999998876655444


Q ss_pred             HHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCC
Q psy2356          74 LHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDT  149 (529)
Q Consensus        74 l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~  149 (529)
                                                ||+|+..|+.++|++|++.+++    +..|.||++.|+..++.+++++|++   
T Consensus        90 --------------------------Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~---  140 (269)
T 4b93_B           90 --------------------------LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD---  140 (269)
T ss_dssp             --------------------------HHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH---
T ss_pred             --------------------------HHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH---
Confidence                                      4455677777777777776544    3334444444444444444443332   


Q ss_pred             CCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHH
Q psy2356         150 RGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA  229 (529)
Q Consensus       150 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v  229 (529)
                                                                          .|.+++.++..|.||||+|+..|+.+++
T Consensus       141 ----------------------------------------------------~g~~~n~~d~~g~TpL~~A~~~g~~~~v  168 (269)
T 4b93_B          141 ----------------------------------------------------SNAKPNKKDLSGNTPLIYACSGGHHELV  168 (269)
T ss_dssp             ----------------------------------------------------TTCCSCCCCTTCCCHHHHHHHTTCGGGH
T ss_pred             ----------------------------------------------------CCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence                                                                1223334444555555555555555555


Q ss_pred             HHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2356         230 NILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ  291 (529)
Q Consensus       230 ~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  291 (529)
                      ++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++++
T Consensus       169 ~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          169 ALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            55555555555555555555555555555555555555555555555555555555555443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-37  Score=289.54  Aligned_cols=259  Identities=17%  Similarity=0.099  Sum_probs=208.8

Q ss_pred             CCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccc-----------------CCCCCcHHHHH
Q psy2356         191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS-----------------AKSGLTPLHVA  253 (529)
Q Consensus       191 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-----------------~~~~~~~l~~a  253 (529)
                      ...++++++++.|.+++..+..|.++++     |+.+++++|+++|++++..                 .....+..+.+
T Consensus        30 ~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a  104 (327)
T 1sw6_A           30 FTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS  104 (327)
T ss_dssp             CCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------C
T ss_pred             hcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHH
Confidence            4556677888999999999999999977     9999999999999876541                 11112334677


Q ss_pred             HHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCC---hhHHH
Q psy2356         254 SFMGCMNIVIYLLQNDANPDI-PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY---ISVEE  329 (529)
Q Consensus       254 ~~~~~~~~v~~Ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~---~~~~~  329 (529)
                      +..+..+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+   .++++
T Consensus       105 ~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~  184 (327)
T 1sw6_A          105 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE  184 (327)
T ss_dssp             HHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred             HHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHH
Confidence            777888999999999999999 89999999999999999999999999999999999999999999999999   78888


Q ss_pred             HhhhhcccccccCCCCCCcHHHHHHH----hCchhHHHHhhhhhhHHHH--------------hhcCCCCCCCCchHHHH
Q psy2356         330 SLGAAERSQLKKRGREGHTALSIAQK----LGYISVEESLKGVTETLII--------------AKGDGEKHKNGLTPLHL  391 (529)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~g~t~L~~  391 (529)
                      .|++....+++..+..|.||||+|+.    .++.++++++.+....+..              ..+.+..+..|.||||.
T Consensus       185 ~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~  264 (327)
T 1sw6_A          185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE  264 (327)
T ss_dssp             HHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHH
T ss_pred             HHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHH
Confidence            88887777889999999999999999    8999999999777554433              33446778889999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCC
Q psy2356         392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH  471 (529)
Q Consensus       392 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  471 (529)
                      |+.      +++|+++                     +++.++..|+||||+|+..|+.++|++|+++|++++.+|..|.
T Consensus       265 a~~------~~~Ll~~---------------------~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~  317 (327)
T 1sw6_A          265 NLD------LKWIIAN---------------------MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL  317 (327)
T ss_dssp             HCS------HHHHHHH---------------------TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HHH------HHHHHHh---------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            985      6666654                     4688899999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhC
Q psy2356         472 TALSIAQKLG  481 (529)
Q Consensus       472 t~l~~A~~~~  481 (529)
                      ||||+|++.|
T Consensus       318 TpL~~A~~~g  327 (327)
T 1sw6_A          318 RPVDFGAGLE  327 (327)
T ss_dssp             CGGGGTCC--
T ss_pred             CHHHHHHhcC
Confidence            9999998654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.5e-36  Score=263.44  Aligned_cols=219  Identities=24%  Similarity=0.311  Sum_probs=183.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCCC-CCCCCCcHHHHHHH
Q psy2356         213 GFTPLHIASHYGNEGVANILLDKRADVNF-SAKSGLTPLHVASFMGCMNIVIYLLQND--ANPDI-PTVRGETPLHLAAR  288 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~l~~a~~~~~~~~v~~Ll~~g--~~~~~-~~~~~~t~l~~a~~  288 (529)
                      |.||||.|+..|+.+++++|++.+.++.. .+..|.||||+|+..|+.+++++|++.|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            57899999999999999999988877644 7888899999999999999999999998  44444 67788999999999


Q ss_pred             cCCHHHHHHHHHCC--CCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhh
Q psy2356         289 ANQTDIIRILLRNG--AQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLK  366 (529)
Q Consensus       289 ~~~~~~~~~Ll~~g--~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~  366 (529)
                      .|+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|++.. .+                            
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~----------------------------  132 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-AS----------------------------  132 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CC----------------------------
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CC----------------------------
Confidence            99999999999988  788888888888888888888888888886532 22                            


Q ss_pred             hhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHH
Q psy2356         367 GVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSAS  446 (529)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~  446 (529)
                                 .+..+..|.||||+|+..|+.+++++|+++|.                  ++++.++..|+||||+|+.
T Consensus       133 -----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------------~~~~~~d~~g~t~L~~A~~  183 (228)
T 2dzn_A          133 -----------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK------------------SAVNWQDKQGWTPLFHALA  183 (228)
T ss_dssp             -----------SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC------------------CCSCCCCTTSCCHHHHHHH
T ss_pred             -----------ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCc------------------ccccCcCCCCCCHHHHHHH
Confidence                       24456678888999999999988888887641                  5678888999999999999


Q ss_pred             cCcHHHHHHHH-hCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356         447 EGHADMSAMLL-EHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV  492 (529)
Q Consensus       447 ~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  492 (529)
                      .|+.+++++|+ ++|++++.+|..|.||+++|.+   .+++++|+++
T Consensus       184 ~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~---~~~~~~l~~~  227 (228)
T 2dzn_A          184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNN  227 (228)
T ss_dssp             TTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS---TTHHHHHHTT
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH---HHHHHHHHhc
Confidence            99999999999 8899999999999999999964   4777877764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-35  Score=273.45  Aligned_cols=231  Identities=27%  Similarity=0.391  Sum_probs=152.1

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      +|.|+|+.||..|++++|++|++.|++++..+..|.||||+|+..|+.++|++|+++|++++..+..|.|          
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t----------  108 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI----------  108 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC----------
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc----------
Confidence            5789999999999999999999999999999999999999999999999999999999999877765554          


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHH
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPAL  158 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l  158 (529)
                                      |||+|+..|+.+++++|++++++    +..|.|||++|+..++.+++++++.......   ...
T Consensus       109 ----------------pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~---~~~  169 (299)
T 1s70_B          109 ----------------PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI---EAA  169 (299)
T ss_dssp             ----------------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH---HHH
T ss_pred             ----------------HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCc---hhh
Confidence                            55567889999999999999766    6778999999999999999998886432110   000


Q ss_pred             HHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy2356         159 HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD  238 (529)
Q Consensus       159 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  238 (529)
                      ...........+..++.                         .........+..|.||||+|+..|+.+++++|+++|++
T Consensus       170 ~~~~~~~~~~~~~~~l~-------------------------~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d  224 (299)
T 1s70_B          170 RKEEERIMLRDARQWLN-------------------------SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (299)
T ss_dssp             HHHHHHHHHHHHHHHHH-------------------------HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             hhhhhhHHHHHHHHHHh-------------------------ccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence            00000000011111111                         11111222333444555555555555555555555555


Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356         239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA  287 (529)
Q Consensus       239 ~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  287 (529)
                      ++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||+++|+
T Consensus       225 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            5555445555555555555555555555555555555555555555443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.3e-35  Score=258.19  Aligned_cols=210  Identities=24%  Similarity=0.332  Sum_probs=160.2

Q ss_pred             CCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcccccccccccc
Q psy2356          15 GHLDKIIEHLKNNVDINTA-NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQ   93 (529)
Q Consensus        15 g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~   93 (529)
                      |+.+++++|++.|.+++.. |..|.||||+|+..|+.+++++|+++|++++..+..|.                      
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~----------------------   59 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR----------------------   59 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC----------------------
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC----------------------
Confidence            6888999999999998765 89999999999999999999999999999987665544                      


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHhhcCCC-----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChH
Q psy2356          94 GDGFTPLAVAMQQGHDKVVAVLLENDTR-----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTK  168 (529)
Q Consensus        94 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~  168 (529)
                          |||++|+..|+.+++++|++.+..     +..+.|||++|+..|+.+++++|++.                     
T Consensus        60 ----t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---------------------  114 (223)
T 2f8y_A           60 ----TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS---------------------  114 (223)
T ss_dssp             ----CHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---------------------
T ss_pred             ----CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc---------------------
Confidence                455566788888899988887652     44556666666666666555555542                     


Q ss_pred             HHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCc
Q psy2356         169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLT  248 (529)
Q Consensus       169 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  248 (529)
                                                        +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus       115 ----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  160 (223)
T 2f8y_A          115 ----------------------------------HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET  160 (223)
T ss_dssp             ----------------------------------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             ----------------------------------CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence                                              2234455566778888888888888888888888888777777888


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc
Q psy2356         249 PLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV  305 (529)
Q Consensus       249 ~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  305 (529)
                      ||++|+..|+.+++++|+++|++++..+..|.||+++|++.++.+++++|+++|+..
T Consensus       161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            888888888888888888888888777777888888888888888888888877754

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.7e-35  Score=269.84  Aligned_cols=233  Identities=18%  Similarity=0.187  Sum_probs=175.7

Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccc
Q psy2356          11 AARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGD   90 (529)
Q Consensus        11 A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   90 (529)
                      +++..+.+.+..++..+ +++..|..|+||||+|+..|+.++|++|+++|++++..+                       
T Consensus         6 ~i~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------------   61 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-----------------------   61 (285)
T ss_dssp             TGGGCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT-----------------------
T ss_pred             HHHhcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-----------------------
Confidence            34566777777777665 788999999999999999999999999999999987653                       


Q ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCC
Q psy2356          91 FKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDD  166 (529)
Q Consensus        91 ~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~  166 (529)
                           |.||||+|+..|+.+++++|++++++    +..|.|||++|+..|+.+++++|++.++                 
T Consensus        62 -----g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----------------  119 (285)
T 3kea_A           62 -----NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-----------------  119 (285)
T ss_dssp             -----TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCG-----------------
T ss_pred             -----CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC-----------------
Confidence                 45667777889999999999998766    5667788888888888888777776543                 


Q ss_pred             hHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCcccCCC
Q psy2356         167 TKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSG-FTPLHIASHYGNEGVANILLDKRADVNFSAKS  245 (529)
Q Consensus       167 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  245 (529)
                                                            +++..+..| .||||+|+..|+.+++++|+++|++.... ..
T Consensus       120 --------------------------------------~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~  160 (285)
T 3kea_A          120 --------------------------------------RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AI  160 (285)
T ss_dssp             --------------------------------------GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-ST
T ss_pred             --------------------------------------CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cC
Confidence                                                  333455556 57777777777777777777777665222 25


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCC
Q psy2356         246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP-LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY  324 (529)
Q Consensus       246 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  324 (529)
                      |.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..|+.+++++|+++|++++..+.       .|+..|+
T Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~  233 (285)
T 3kea_A          161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDD  233 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTC
T ss_pred             CccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCC
Confidence            6777777777777777777777777777777777776 7777777777777777777777776653       3455777


Q ss_pred             hhHHHHhhhhc
Q psy2356         325 ISVEESLGAAE  335 (529)
Q Consensus       325 ~~~~~~l~~~~  335 (529)
                      .+++++|++..
T Consensus       234 ~~iv~~Ll~~g  244 (285)
T 3kea_A          234 AEIAKMIIEKH  244 (285)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcC
Confidence            77777776554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-36  Score=283.26  Aligned_cols=198  Identities=19%  Similarity=0.199  Sum_probs=109.6

Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---HH
Q psy2356         218 HIASHYGNEGVANILLDKRADVNF-SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ---TD  293 (529)
Q Consensus       218 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~---~~  293 (529)
                      |.|+..+..+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+   .+
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~  181 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG  181 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHH
Confidence            334444444444444444444444 44444455555555555555555555454444444444555555554444   34


Q ss_pred             HHHHHHHCC-CCcccccccCCcHHHHHHH----cCChhHHHHhhhhc-------------------ccccccCCCCCCcH
Q psy2356         294 IIRILLRNG-AQVDARAREGHTALSIAQK----LGYISVEESLGAAE-------------------RSQLKKRGREGHTA  349 (529)
Q Consensus       294 ~~~~Ll~~g-~~~~~~~~~g~t~l~~a~~----~~~~~~~~~l~~~~-------------------~~~~~~~~~~~~~~  349 (529)
                      +++.|++.+ ++++..+..|.||||+|+.    .|+.+++++|++..                   +.+++..+..|.||
T Consensus       182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~  261 (327)
T 1sw6_A          182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS  261 (327)
T ss_dssp             CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred             HHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence            444444433 3444444445555555544    44445555444332                   55666777778888


Q ss_pred             HHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCC
Q psy2356         350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAK  429 (529)
Q Consensus       350 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~  429 (529)
                      ||.|+.      +++|        ...+.+..+..|.||||+|+..|+.+++++|+++                   |+|
T Consensus       262 L~~a~~------~~~L--------l~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-------------------Gad  308 (327)
T 1sw6_A          262 ILENLD------LKWI--------IANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-------------------GAD  308 (327)
T ss_dssp             HHHHCS------HHHH--------HHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-------------------TCC
T ss_pred             hHHHHH------HHHH--------HHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCC
Confidence            887774      4555        3335688889999999999999999999988886                   566


Q ss_pred             CCCcccCCCCHHHHHHHcC
Q psy2356         430 PNAESVAGFTPLHLSASEG  448 (529)
Q Consensus       430 ~~~~~~~g~t~L~~A~~~~  448 (529)
                      ++.+|..|+||||+|+++|
T Consensus       309 ~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          309 PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTCCCTTSCCGGGGTCC--
T ss_pred             CcccCCCCCCHHHHHHhcC
Confidence            7889999999999998765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.2e-34  Score=254.76  Aligned_cols=203  Identities=27%  Similarity=0.368  Sum_probs=148.2

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356         209 TSKSGFTPLHIASHYGNEGVANILLDKRA----DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLH  284 (529)
Q Consensus       209 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  284 (529)
                      .+..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            45567777777777777777777776654    56667777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHH
Q psy2356         285 LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES  364 (529)
Q Consensus       285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  364 (529)
                      +|+..|+.+++++|+++|++.+...                            .+                         
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~----------------------------~~-------------------------  110 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHS----------------------------IL-------------------------  110 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSC----------------------------GG-------------------------
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHH----------------------------Hh-------------------------
Confidence            7777777777777777765532100                            00                         


Q ss_pred             hhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCccc-CCCCHHHH
Q psy2356         365 LKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV-AGFTPLHL  443 (529)
Q Consensus       365 l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~-~g~t~L~~  443 (529)
                                    +..+..|.||||+|+..|+.+++++|+++                   |++++.++. .|.||||+
T Consensus       111 --------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------g~~~~~~~~~~g~tpL~~  157 (236)
T 1ikn_D          111 --------------KATNYNGHTCLHLASIHGYLGIVELLVSL-------------------GADVNAQEPCNGRTALHL  157 (236)
T ss_dssp             --------------GCCCTTCCCHHHHHHHTTCHHHHHHHHHH-------------------TCCTTCCCTTTCCCHHHH
T ss_pred             --------------hccCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCCCCCCCCCCCCCHHHH
Confidence                          22345577788888888887777777765                   445566665 78888888


Q ss_pred             HHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356         444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI  497 (529)
Q Consensus       444 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  497 (529)
                      |+..|+.++|++|+++|++++..|..|.|||++|+..|+.+++++|++++++..
T Consensus       158 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            888888888888888888888888888888888888888888888888888766

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.3e-34  Score=255.72  Aligned_cols=215  Identities=26%  Similarity=0.256  Sum_probs=173.4

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHH
Q psy2356           1 SGEGHTSFLRAARAGHLDKIIEHLKNNV----DINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHI   76 (529)
Q Consensus         1 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~----~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~   76 (529)
                      +++|.||||.||..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.|    
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t----   80 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNT----   80 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCC----
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC----
Confidence            3689999999999999999999987654    68888999999999999999999999999999998876655444    


Q ss_pred             HhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcC
Q psy2356          77 ASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLP  156 (529)
Q Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  156 (529)
                                            |||+|+..|+.+++++|++.+.....                                
T Consensus        81 ----------------------~L~~A~~~~~~~~v~~Ll~~~~~~~~--------------------------------  106 (236)
T 1ikn_D           81 ----------------------PLHLACEQGCLASVGVLTQSCTTPHL--------------------------------  106 (236)
T ss_dssp             ----------------------HHHHHHHHTCHHHHHHHHHSTTTTSS--------------------------------
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHhcccchhH--------------------------------
Confidence                                  44455666677777777666543110                                


Q ss_pred             HHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy2356         157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR  236 (529)
Q Consensus       157 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  236 (529)
                                                                    ...++..+..|.||||+|+..|+.+++++|+++|
T Consensus       107 ----------------------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  140 (236)
T 1ikn_D          107 ----------------------------------------------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLG  140 (236)
T ss_dssp             ----------------------------------------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ----------------------------------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                                                          0011345567889999999999999999999999


Q ss_pred             CCCcccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc--cccccCC
Q psy2356         237 ADVNFSAK-SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD--ARAREGH  313 (529)
Q Consensus       237 ~~~~~~~~-~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~--~~~~~g~  313 (529)
                      ++++..+. .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++..  ..+..+.
T Consensus       141 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~  220 (236)
T 1ikn_D          141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE  220 (236)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTT
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchH
Confidence            99999887 89999999999999999999999999999999999999999999999999999999999765  5666677


Q ss_pred             cHHHHH
Q psy2356         314 TALSIA  319 (529)
Q Consensus       314 t~l~~a  319 (529)
                      |+...+
T Consensus       221 ~~~~~~  226 (236)
T 1ikn_D          221 ESYDTE  226 (236)
T ss_dssp             TCCCCC
T ss_pred             HHHhhh
Confidence            665433

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.9e-32  Score=236.96  Aligned_cols=192  Identities=22%  Similarity=0.304  Sum_probs=132.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcC
Q psy2356         245 SGLTPLHVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG  323 (529)
Q Consensus       245 ~~~~~l~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  323 (529)
                      .+.|||+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+|+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            34556666666666666665555543 55555666666666666666666666666666666666666666666666666


Q ss_pred             ChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy2356         324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL  403 (529)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  403 (529)
                      +.+++++|++....+++.                                       .+..|.||||+|+..|+.+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~---------------------------------------~~~~g~t~L~~A~~~~~~~~v~~  124 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNK---------------------------------------HNRYGGNALIPAAEKGHIDNVKL  124 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTC---------------------------------------CCTTSCCSHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHhccCccccc---------------------------------------ccCCCCcHHHHHHHcCCHHHHHH
Confidence            666666665433333222                                       33445666667777777777777


Q ss_pred             HHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCc-----HHHHHHHHhCCCCCcchhhcCCCHHHHHH
Q psy2356         404 LLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH-----ADMSAMLLEHGADVSHAAKEGHTALSIAQ  478 (529)
Q Consensus       404 Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  478 (529)
                      |+++|                  +++++.++..|.||||+|+..++     .+++++|+++|++++.+|..|.|||++|+
T Consensus       125 Ll~~g------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  186 (201)
T 3hra_A          125 LLEDG------------------REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN  186 (201)
T ss_dssp             HHHHC------------------CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHcC------------------CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Confidence            76653                  15667888889999999998887     89999999999999999999999999999


Q ss_pred             HhCCchHHHHhhccc
Q psy2356         479 KLGYISVEESLKGVT  493 (529)
Q Consensus       479 ~~~~~~~~~~L~~~~  493 (529)
                      +.|+.+++++|++++
T Consensus       187 ~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          187 QKGYTEISKILAQYN  201 (201)
T ss_dssp             HHTCHHHHHHHHTCC
T ss_pred             HcCCHhHHHHHHhcC
Confidence            999999999998864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.6e-32  Score=226.23  Aligned_cols=158  Identities=34%  Similarity=0.531  Sum_probs=109.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy2356         216 PLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII  295 (529)
Q Consensus       216 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  295 (529)
                      +|+.|++.|+.++|++|++.|++++.++..|.|||++|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v   86 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV   86 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence            56777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHh
Q psy2356         296 RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIA  375 (529)
Q Consensus       296 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~  375 (529)
                      ++|+++|++++.++..|                                                               
T Consensus        87 ~~Ll~~gadvn~~d~~G---------------------------------------------------------------  103 (169)
T 4gpm_A           87 KLLISKGADVNAKDSDG---------------------------------------------------------------  103 (169)
T ss_dssp             HHHHHTTCCTTCCCTTS---------------------------------------------------------------
T ss_pred             HHHHHCcCCCCCCCCCC---------------------------------------------------------------
Confidence            77777777766554444                                                               


Q ss_pred             hcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHH
Q psy2356         376 KGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM  455 (529)
Q Consensus       376 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  455 (529)
                                .||||+|+..|+.+++++|+++                   |+|++.++..|+|||++|+++|+.+++++
T Consensus       104 ----------~TpLh~A~~~g~~~~v~~Ll~~-------------------gad~~~~d~~G~TpL~~A~~~g~~~iv~~  154 (169)
T 4gpm_A          104 ----------RTPLHHAAENGHKEVVKLLISK-------------------GADVNTSDSDGRTPLDLAREHGNEEVVKL  154 (169)
T ss_dssp             ----------CCHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ----------CCHHHHHHHcCCHHHHHHHHHc-------------------CCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                      3445555555555555555554                   55667777788888888888888888888


Q ss_pred             HHhCCCCCcc
Q psy2356         456 LLEHGADVSH  465 (529)
Q Consensus       456 Ll~~g~~~~~  465 (529)
                      |+++|++++.
T Consensus       155 Ll~~GA~ie~  164 (169)
T 4gpm_A          155 LEKQGGWLEH  164 (169)
T ss_dssp             HHTC------
T ss_pred             HHHCCCCcCC
Confidence            8888888753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4e-32  Score=225.10  Aligned_cols=157  Identities=34%  Similarity=0.516  Sum_probs=123.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHH
Q psy2356         249 PLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE  328 (529)
Q Consensus       249 ~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  328 (529)
                      +|+.|+..|+.++|++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..                 
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~-----------------   69 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD-----------------   69 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccC-----------------
Confidence            566777777777777777777777777777777777777777777777777777766554444                 


Q ss_pred             HHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q psy2356         329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNN  408 (529)
Q Consensus       329 ~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  408 (529)
                                                                              |.||||+|+..|+.+++++|+++ 
T Consensus        70 --------------------------------------------------------g~TpLh~A~~~g~~~~v~~Ll~~-   92 (169)
T 4gpm_A           70 --------------------------------------------------------GRTPLHHAAENGHKEVVKLLISK-   92 (169)
T ss_dssp             --------------------------------------------------------SCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred             --------------------------------------------------------CCCHHHHHHHcCCHHHHHHHHHC-
Confidence                                                                    45666666666777666666665 


Q ss_pred             CCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHH
Q psy2356         409 AQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES  488 (529)
Q Consensus       409 ~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  488 (529)
                                        |+|+|.++..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|++.|+.+++++
T Consensus        93 ------------------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~  154 (169)
T 4gpm_A           93 ------------------GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL  154 (169)
T ss_dssp             ------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ------------------cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                              56778899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccchhh
Q psy2356         489 LKGVTETLI  497 (529)
Q Consensus       489 L~~~~~~~~  497 (529)
                      |++.++++.
T Consensus       155 Ll~~GA~ie  163 (169)
T 4gpm_A          155 LEKQGGWLE  163 (169)
T ss_dssp             HHTC-----
T ss_pred             HHHCCCCcC
Confidence            999999876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.7e-31  Score=231.00  Aligned_cols=192  Identities=20%  Similarity=0.262  Sum_probs=168.5

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCC-CCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy2356         211 KSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA  289 (529)
Q Consensus       211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~  289 (529)
                      ..+.|||+.|+..|+.+.++.|+..+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            356899999999999999999999877 8999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHH-HCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhh
Q psy2356         290 NQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGV  368 (529)
Q Consensus       290 ~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  368 (529)
                      |+.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|++....+++..+..                       
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-----------------------  139 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF-----------------------  139 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT-----------------------
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC-----------------------
Confidence            9999999999 5678999999999999999999999999999987765655555544                       


Q ss_pred             hhHHHHhhcCCCCCCCCchHHHHHHHcCC-----HHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHH
Q psy2356         369 TETLIIAKGDGEKHKNGLTPLHLCAQEDR-----VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL  443 (529)
Q Consensus       369 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~  443 (529)
                                      |.||||+|+..++     .+++++|++                   +|++++.++..|+|||++
T Consensus       140 ----------------g~t~L~~A~~~~~~~~~~~~~v~~Ll~-------------------~ga~~~~~~~~g~t~l~~  184 (201)
T 3hra_A          140 ----------------GYTALIEAVGLREGNQLYQDIVKLLME-------------------NGADQSIKDNSGRTAMDY  184 (201)
T ss_dssp             ----------------SCCHHHHHHHSSCCSHHHHHHHHHHHH-------------------TTCCTTCCCTTSCCHHHH
T ss_pred             ----------------CCCHHHHHHHhccchhhHHHHHHHHHH-------------------CCCCCCccCCCCCCHHHH
Confidence                            5555555555554     555555555                   567778899999999999


Q ss_pred             HHHcCcHHHHHHHHhCC
Q psy2356         444 SASEGHADMSAMLLEHG  460 (529)
Q Consensus       444 A~~~~~~~~v~~Ll~~g  460 (529)
                      |+..|+.+++++|+++|
T Consensus       185 A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          185 ANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTCHHHHHHHHTCC
T ss_pred             HHHcCCHhHHHHHHhcC
Confidence            99999999999999987

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.4e-33  Score=251.42  Aligned_cols=213  Identities=25%  Similarity=0.252  Sum_probs=178.6

Q ss_pred             CCCHHHHHHHcCCHH----HHHHHHhCCCCCcc----cCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCC------
Q psy2356         213 GFTPLHIASHYGNEG----VANILLDKRADVNF----SAKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIP------  275 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~----~v~~Ll~~g~~~~~----~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~------  275 (529)
                      |.||||.|+..|+.+    ++++|++.|++++.    .+..|.||||+|+..   |+.+++++|++.|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            678999999999987    66777788999988    788999999999999   9999999999988776633      


Q ss_pred             -----CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHH
Q psy2356         276 -----TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL  350 (529)
Q Consensus       276 -----~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  350 (529)
                           +..|.||||+|+..|+.+++++|+++|++++..+..+..+                                   
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-----------------------------------  126 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ-----------------------------------  126 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS-----------------------------------
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc-----------------------------------
Confidence                 3678999999999999999999999999988877654310                                   


Q ss_pred             HHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCC
Q psy2356         351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKP  430 (529)
Q Consensus       351 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~  430 (529)
                                               ......+..|.||||+|+..|+.+++++|++++                ..|+++
T Consensus       127 -------------------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~----------------~~ga~~  165 (256)
T 2etb_A          127 -------------------------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENP----------------HQPASL  165 (256)
T ss_dssp             -------------------------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS----------------SCCCCT
T ss_pred             -------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhcc----------------ccCCCc
Confidence                                     011233456889999999999999988888821                025677


Q ss_pred             CCcccCCCCHHHHHHH--cCcHH-------HHHHHHhCCCCC-------cchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356         431 NAESVAGFTPLHLSAS--EGHAD-------MSAMLLEHGADV-------SHAAKEGHTALSIAQKLGYISVEESLKGVTE  494 (529)
Q Consensus       431 ~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  494 (529)
                      +.++..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+|++.|+.+++++|++++.
T Consensus       166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            8889999999999999  78888       999999999999       8999999999999999999999999999998


Q ss_pred             hhhhccC
Q psy2356         495 TLIIAKG  501 (529)
Q Consensus       495 ~~~~~~~  501 (529)
                      .......
T Consensus       246 ~~~~~~~  252 (256)
T 2etb_A          246 SGAAAHH  252 (256)
T ss_dssp             HHHHHHC
T ss_pred             CCCCccc
Confidence            8775443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2e-32  Score=248.83  Aligned_cols=227  Identities=19%  Similarity=0.224  Sum_probs=161.4

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHH----cCCCCC----CCCCCCChHHHHHHHc---CChhHHHHHHHCCCCCCCCCCCC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLK----NNVDIN----TANANGLNALHLASKD---GHLHVVTELLSRGANVDSATKKG   70 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~----~~~~~~----~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~~~~~~   70 (529)
                      .+|.|+||.||+.|++++|+.|++    .+.+++    ..+..|+||||+|+..   |+.++|++|++.|++...     
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~-----   85 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS-----   85 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC-----
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc-----
Confidence            578999999999999998888886    455555    3578899999999986   999999999998876542     


Q ss_pred             CchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCC--CCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356          71 NTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDT--RGKDGFTPLAVAMQQGHDKVVAVLLEND  148 (529)
Q Consensus        71 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  148 (529)
                                                               ++.+++...  .+..|.|||++|+..|+.+++++|++.+
T Consensus        86 -----------------------------------------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  124 (273)
T 2pnn_A           86 -----------------------------------------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG  124 (273)
T ss_dssp             -----------------------------------------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -----------------------------------------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                                                     112222221  1334555666666555555555555544


Q ss_pred             CCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHH
Q psy2356         149 TRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV  228 (529)
Q Consensus       149 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~  228 (529)
                      .+.......-              .                           .........+..|.||||+|+..|+.++
T Consensus       125 a~~~~~~~~~--------------~---------------------------~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A          125 ADVQAAANGD--------------F---------------------------FKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             CCTTCCBCSG--------------G---------------------------GSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             CCcCcccccc--------------c---------------------------cccccccccccCCCCHHHHHHHcCCHHH
Confidence            3322111000              0                           0001123345578999999999999999


Q ss_pred             HHHHHh---CCCCCcccCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCCC-------CCCCCCCcHHHHHHHc
Q psy2356         229 ANILLD---KRADVNFSAKSGLTPLHVASFMGC---------MNIVIYLLQNDANPD-------IPTVRGETPLHLAARA  289 (529)
Q Consensus       229 v~~Ll~---~g~~~~~~~~~~~~~l~~a~~~~~---------~~~v~~Ll~~g~~~~-------~~~~~~~t~l~~a~~~  289 (529)
                      +++|++   .|++++..+..|.||||+|+..++         .+++++|++.|++++       ..+..|.||||+|++.
T Consensus       164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            999999   899999999999999999999888         789999999998886       4888999999999999


Q ss_pred             CCHHHHHHHHHCCC-CcccccccCCcH
Q psy2356         290 NQTDIIRILLRNGA-QVDARAREGHTA  315 (529)
Q Consensus       290 ~~~~~~~~Ll~~g~-~~~~~~~~g~t~  315 (529)
                      |+.+++++|+++|+ ++......+.+|
T Consensus       244 g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          244 GKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             TCHHHHHHHHHHHTC------------
T ss_pred             ChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence            99999999999998 666655555544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.98  E-value=5.8e-32  Score=243.38  Aligned_cols=62  Identities=13%  Similarity=0.110  Sum_probs=54.9

Q ss_pred             chhHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCChHHHHHHHc---CChhHHHHHHHCCCCCCC
Q psy2356           4 GHTSFLRAARAGHLD----KIIEHLKNNVDINT----ANANGLNALHLASKD---GHLHVVTELLSRGANVDS   65 (529)
Q Consensus         4 g~t~L~~A~~~g~~~----~v~~ll~~~~~~~~----~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~   65 (529)
                      |.||||.||..|+.+    ++++|++.|++++.    .|..|+||||+|+..   |+.+++++|++.|++++.
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~   74 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN   74 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccc
Confidence            889999999999997    66777778999998    899999999999999   999999999998887764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=2.3e-32  Score=248.38  Aligned_cols=219  Identities=21%  Similarity=0.252  Sum_probs=152.8

Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCc----ccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCC
Q psy2356         204 HNPDVTSKSGFTPLHIASHYGNEGVANILLD----KRADVN----FSAKSGLTPLHVASFM---GCMNIVIYLLQNDANP  272 (529)
Q Consensus       204 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~----~g~~~~----~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~  272 (529)
                      ...+..+..|.|+||.|+..|+.++++.|++    .+.+++    ..+..|.||||+|+..   |+.+++++|++.|+++
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            3445677789999999999999998888876    566665    3578899999999987   9999999999987642


Q ss_pred             -------C----CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccc--------------cCCcHHHHHHHcCChhH
Q psy2356         273 -------D----IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR--------------EGHTALSIAQKLGYISV  327 (529)
Q Consensus       273 -------~----~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------~g~t~l~~a~~~~~~~~  327 (529)
                             +    ..+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.++
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                   2    2566899999999999999999999999999999887              57777777777777777


Q ss_pred             HHHhhhh--cccccccCCCCCCcHHHHHHHhCchh--HHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy2356         328 EESLGAA--ERSQLKKRGREGHTALSIAQKLGYIS--VEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL  403 (529)
Q Consensus       328 ~~~l~~~--~~~~~~~~~~~~~~~l~~a~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  403 (529)
                      +++|++.  .+.+++..+..|.||||+|+..++..  ..+++                                .+++++
T Consensus       164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~--------------------------------~~~v~~  211 (273)
T 2pnn_A          164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV--------------------------------TSMYNE  211 (273)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH--------------------------------HHHHHH
T ss_pred             HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH--------------------------------HHHHHH
Confidence            7777654  44555555555444444444433311  00000                                344555


Q ss_pred             HHhcCCCCCCCchhHHHHHHHHcCCCCC-------CcccCCCCHHHHHHHcCcHHHHHHHHhCCC-CCcchhhcCCCH
Q psy2356         404 LLKNNAQVDTPTKMDIATTLLEYGAKPN-------AESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTA  473 (529)
Q Consensus       404 Ll~~~~~~~~~~~~~~~~~L~~~g~~~~-------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~  473 (529)
                      |++                   +|++++       .++..|+||||+|+..|+.++|++|+++|+ |+......+.+|
T Consensus       212 Ll~-------------------~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          212 ILI-------------------LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHH-------------------HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred             HHH-------------------hhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence            554                   455555       488899999999999999999999999999 787776666554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.9e-31  Score=239.43  Aligned_cols=214  Identities=23%  Similarity=0.214  Sum_probs=171.4

Q ss_pred             CCCCCHHHHHHHcCCHHH----HHHHHhCCCCCcccC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCC--------
Q psy2356         211 KSGFTPLHIASHYGNEGV----ANILLDKRADVNFSA----KSGLTPLHVAS---FMGCMNIVIYLLQNDAN--------  271 (529)
Q Consensus       211 ~~~~t~l~~A~~~~~~~~----v~~Ll~~g~~~~~~~----~~~~~~l~~a~---~~~~~~~v~~Ll~~g~~--------  271 (529)
                      ..+.++||.|+..|+.+.    +++|++.|++++..+    ..|.||||+|+   ..|+.+++++|++.|++        
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            356789999999999885    455555888888665    66999999998   67999999999987643        


Q ss_pred             ---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCc
Q psy2356         272 ---PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHT  348 (529)
Q Consensus       272 ---~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  348 (529)
                         .+..+..|.||||+|+..|+.+++++|+++|++++..+..+..                                  
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~----------------------------------  128 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF----------------------------------  128 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC----------------------------------
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc----------------------------------
Confidence               3444457889999999999999999999999888876653100                                  


Q ss_pred             HHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCC
Q psy2356         349 ALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGA  428 (529)
Q Consensus       349 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~  428 (529)
                                               ...+....+..|.||||+|+..|+.+++++|++.|.                .|+
T Consensus       129 -------------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----------------~ga  167 (260)
T 3jxi_A          129 -------------------------QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH----------------KQA  167 (260)
T ss_dssp             -------------------------SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS----------------CCC
T ss_pred             -------------------------CcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc----------------cCC
Confidence                                     001113344678899999999999999888888210                256


Q ss_pred             CCCCcccCCCCHHHHHHHcCc---------HHHHHHHHhCCCCC-------cchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356         429 KPNAESVAGFTPLHLSASEGH---------ADMSAMLLEHGADV-------SHAAKEGHTALSIAQKLGYISVEESLKGV  492 (529)
Q Consensus       429 ~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  492 (529)
                      +++.++..|+||||+|+..++         .+++++|+++|+++       +..|..|.||||+|++.|+.+++++|+++
T Consensus       168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR  247 (260)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            778899999999999998887         79999999999998       67999999999999999999999999999


Q ss_pred             cchhhhc
Q psy2356         493 TETLIIA  499 (529)
Q Consensus       493 ~~~~~~~  499 (529)
                      +......
T Consensus       248 g~~~~~~  254 (260)
T 3jxi_A          248 EIADAAA  254 (260)
T ss_dssp             HHHHHC-
T ss_pred             CCCcccc
Confidence            9988744

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=1.8e-32  Score=256.51  Aligned_cols=249  Identities=15%  Similarity=0.065  Sum_probs=160.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCC---cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHH
Q psy2356         214 FTPLHIASHYGNEGVANILLDKRADV---NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP---DIPTVRGETPLHLAA  287 (529)
Q Consensus       214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~---~~~~~~~~t~l~~a~  287 (529)
                      .||||+|+..|+.+++++|++.|+..   +..+..+.||||+|+..|+.+++++|+++|+++   +..+.. .||||+|+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            48888888888888888888887622   123345667888888888888888888888642   222222 78888888


Q ss_pred             HcCCHHHHHHHHHCCCCccc--ccccCCcHHHHHH-HcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHH
Q psy2356         288 RANQTDIIRILLRNGAQVDA--RAREGHTALSIAQ-KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES  364 (529)
Q Consensus       288 ~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  364 (529)
                      ..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++...        .|.||++.|+..|+.+++++
T Consensus       172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~l  243 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPF  243 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHH
T ss_pred             HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHH
Confidence            88888888888888888776  7777888888888 8888888888876331        26788888888888888888


Q ss_pred             hhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHH------------HHHHHHhcCCCCCCCchhHHHHHHHHc------
Q psy2356         365 LKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG------------VAELLLKNNAQVDTPTKMDIATTLLEY------  426 (529)
Q Consensus       365 l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~~~~Ll~~~~~~~~~~~~~~~~~L~~~------  426 (529)
                      |.+.........          ++++.|+..|+.+            +++.|+..+.    ....+.+++|++.      
T Consensus       244 L~~~ga~~~~~~----------~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~----~~~~~~~~~Ll~~~~vk~l  309 (376)
T 2aja_A          244 IARHVNRLKEMH----------DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND----EVLLDDIRFLLSIPGIKAL  309 (376)
T ss_dssp             HHHHHHHHHHHH----------TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC----GGGHHHHHHHHTSTTTGGG
T ss_pred             HHhcCccccccc----------HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch----hhHHHHHHHHHhChhhhhh
Confidence            866544432221          2455555555554            3455666542    2345666666653      


Q ss_pred             ---CCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356         427 ---GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV  492 (529)
Q Consensus       427 ---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  492 (529)
                         |++++    .+.|||++|+..|+.++|++|++.|   ..++..++|++.+|...|+.++++.-+.+
T Consensus       310 ~~~g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          310 APTATIPG----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             SSCCSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC----------------------
T ss_pred             hccCCCCC----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHHH
Confidence               44443    4568999999999999999999875   66788899999999999999988765543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.6e-30  Score=232.30  Aligned_cols=218  Identities=17%  Similarity=0.186  Sum_probs=153.5

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHH----HcCCCCCCCC----CCCChHHHHHH---HcCChhHHHHHHHCCCCCCCCCCCC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHL----KNNVDINTAN----ANGLNALHLAS---KDGHLHVVTELLSRGANVDSATKKG   70 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll----~~~~~~~~~~----~~g~t~L~~A~---~~g~~~iv~~Ll~~ga~~~~~~~~~   70 (529)
                      .-|.|+||.||+.|+.+.|+.|+    +.|.+++..+    ..|+||||+|+   ..|+.+++++|++.|++.....   
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~---   79 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR---   79 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence            45789999999999999544444    4888888665    66999999998   6799999999999877654211   


Q ss_pred             CchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcC--CCCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356          71 NTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEND--TRGKDGFTPLAVAMQQGHDKVVAVLLEND  148 (529)
Q Consensus        71 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~  148 (529)
                                                                 .+++..  ..+..|.||||+|+..|+.+++++|++.+
T Consensus        80 -------------------------------------------~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  116 (260)
T 3jxi_A           80 -------------------------------------------EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG  116 (260)
T ss_dssp             -------------------------------------------HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -------------------------------------------hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence                                                       011111  11224455555555555555555555443


Q ss_pred             CCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHH
Q psy2356         149 TRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV  228 (529)
Q Consensus       149 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~  228 (529)
                      ++......                    +..                     ....+....+..|.||||+|+..|+.++
T Consensus       117 a~~~~~~~--------------------~~~---------------------~~~~~~~~~~~~g~tpL~~A~~~g~~~~  155 (260)
T 3jxi_A          117 ADVHAQAR--------------------GRF---------------------FQPKDEGGYFYFGELPLSLAACTNQPHI  155 (260)
T ss_dssp             CCTTCCCE--------------------ECC---------------------CSSSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred             CCcCcccc--------------------ccc---------------------cCcccccccccCCCCHHHHHHHcCCHHH
Confidence            32221100                    000                     0011222334578899999999999999


Q ss_pred             HHHHHh---CCCCCcccCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCC-------CCCCCCCCcHHHHHHHc
Q psy2356         229 ANILLD---KRADVNFSAKSGLTPLHVASFMGC---------MNIVIYLLQNDANP-------DIPTVRGETPLHLAARA  289 (529)
Q Consensus       229 v~~Ll~---~g~~~~~~~~~~~~~l~~a~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~~~t~l~~a~~~  289 (529)
                      +++|++   .|++++..+..|+||||+|+..++         .+++++|++.|+++       +..+..|.||||+|++.
T Consensus       156 v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence            999999   899999999999999999998777         68899999988887       56888899999999999


Q ss_pred             CCHHHHHHHHHCCCCcc
Q psy2356         290 NQTDIIRILLRNGAQVD  306 (529)
Q Consensus       290 ~~~~~~~~Ll~~g~~~~  306 (529)
                      |+.+++++|+++|.+..
T Consensus       236 g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          236 GKIGIFQHIIRREIADA  252 (260)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCcc
Confidence            99999999998876543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=5.4e-30  Score=232.14  Aligned_cols=186  Identities=23%  Similarity=0.293  Sum_probs=133.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CcccccccCCcHHHHHH-----
Q psy2356         249 PLHVASFMGCMNIVIYLLQNDAN--PDIPTVRGETPLHLAARANQTDIIRILLRNGA-QVDARAREGHTALSIAQ-----  320 (529)
Q Consensus       249 ~l~~a~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~a~-----  320 (529)
                      +++.|+..++.+.++.+++.+.+  ++..|..|.||||+|+..|+.+++++|+++|+ +++..+..|.||+++|+     
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~  158 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLK  158 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhh
Confidence            44555555555555555544333  45556666666666666666666666666665 66666666666666666     


Q ss_pred             HcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHH
Q psy2356         321 KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV  400 (529)
Q Consensus       321 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  400 (529)
                      ..++.+++++|++...                                        .....+..|.||||+|+..|+.++
T Consensus       159 ~~~~~~~v~~Ll~~g~----------------------------------------~~~~~~~~g~tpLh~A~~~g~~~~  198 (276)
T 4hbd_A          159 TQDDIETVLQLFRLGN----------------------------------------INAKASQAGQTALMLAVSHGRVDV  198 (276)
T ss_dssp             SHHHHHHHHHHHHHSC----------------------------------------TTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             hhhhHHHHHHHHHcCC----------------------------------------CccccCCCCCCHHHHHHHcCCHHH
Confidence            4455566666643221                                        112234457788888888888888


Q ss_pred             HHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHh-CCCCCcchhhcCCCHHHHHHH
Q psy2356         401 AELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE-HGADVSHAAKEGHTALSIAQK  479 (529)
Q Consensus       401 ~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~  479 (529)
                      +++|+++                   |+|+|.+|..|+||||+|+..|+.++|++|++ +|++++.+|..|.|||++|+.
T Consensus       199 v~~Ll~~-------------------gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~  259 (276)
T 4hbd_A          199 VKALLAC-------------------EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD  259 (276)
T ss_dssp             HHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHhC-------------------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH
Confidence            8877775                   55678888899999999999999999999999 899999999999999999999


Q ss_pred             hCCchHHHHhhccc
Q psy2356         480 LGYISVEESLKGVT  493 (529)
Q Consensus       480 ~~~~~~~~~L~~~~  493 (529)
                      .|+.+++++|++..
T Consensus       260 ~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          260 AGQSEIASMLYSRM  273 (276)
T ss_dssp             HTCHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHhcc
Confidence            99999999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=3.5e-29  Score=214.48  Aligned_cols=162  Identities=30%  Similarity=0.384  Sum_probs=110.1

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHH
Q psy2356         240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA  319 (529)
Q Consensus       240 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  319 (529)
                      +..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+.         
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------   99 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF---------   99 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT---------
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------
Confidence            34455566666666666666666666666666666666666666666666666666666666555544333         


Q ss_pred             HHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHH
Q psy2356         320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG  399 (529)
Q Consensus       320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  399 (529)
                                                                                      .|.||||+|+..|+.+
T Consensus       100 ----------------------------------------------------------------~g~t~L~~A~~~~~~~  115 (192)
T 2rfm_A          100 ----------------------------------------------------------------SGKTPLMWSIIFGYSE  115 (192)
T ss_dssp             ----------------------------------------------------------------TSCCHHHHHHHHTCHH
T ss_pred             ----------------------------------------------------------------CCCcHHHHHHHcCCHH
Confidence                                                                            3445555555556665


Q ss_pred             HHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHH
Q psy2356         400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK  479 (529)
Q Consensus       400 ~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  479 (529)
                      ++++|+++                   |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+.
T Consensus       116 ~v~~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  176 (192)
T 2rfm_A          116 MSYFLLEH-------------------GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI  176 (192)
T ss_dssp             HHHHHHHT-------------------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             HHHHHHHC-------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            55555554                   45567777778888888888888888888888888888888888888888888


Q ss_pred             hCCchHHHHhhccc
Q psy2356         480 LGYISVEESLKGVT  493 (529)
Q Consensus       480 ~~~~~~~~~L~~~~  493 (529)
                      .|+.+++++|++++
T Consensus       177 ~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          177 FGRQEVIKIFTEVR  190 (192)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHhcc
Confidence            88888888887764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=9.2e-29  Score=207.82  Aligned_cols=168  Identities=27%  Similarity=0.365  Sum_probs=109.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356         214 FTPLHIASHYGNEGVANILLDKRAD-VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT  292 (529)
Q Consensus       214 ~t~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~  292 (529)
                      .+|||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            4677777777777777777777665 566666677777777777777777777777777777776777777777777777


Q ss_pred             HHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHH
Q psy2356         293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL  372 (529)
Q Consensus       293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~  372 (529)
                      +++++|+++|++++..+..                                                             
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~-------------------------------------------------------------  101 (172)
T 3v30_A           83 DIVGLLLERDVDINIYDWN-------------------------------------------------------------  101 (172)
T ss_dssp             HHHHHHHTTTCCTTCCCTT-------------------------------------------------------------
T ss_pred             HHHHHHHHcCCCCCCCCCC-------------------------------------------------------------
Confidence            7777777666665544433                                                             


Q ss_pred             HHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHH
Q psy2356         373 IIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM  452 (529)
Q Consensus       373 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~  452 (529)
                                  |.||||+|+..|+.+++++|+++                   |++++.++..|.|||++|+..|+.++
T Consensus       102 ------------g~t~L~~A~~~~~~~~v~~Ll~~-------------------ga~~~~~~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A          102 ------------GGTPLLYAVRGNHVKCVEALLAR-------------------GADLTTEADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             ------------SCCHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             ------------CCCHHHHHHHcCCHHHHHHHHHc-------------------CCCccccCCCCCCHHHHHHHhCcHHH
Confidence                        34445555555555555555554                   44556677778888888888888888


Q ss_pred             HHHHHhCCCCCcchhhcCCCH
Q psy2356         453 SAMLLEHGADVSHAAKEGHTA  473 (529)
Q Consensus       453 v~~Ll~~g~~~~~~~~~g~t~  473 (529)
                      +++|+++|+++...+..|.||
T Consensus       151 ~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          151 QQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHHhcccCCCCCC
Confidence            888888877777766666665

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.8e-28  Score=204.94  Aligned_cols=160  Identities=26%  Similarity=0.348  Sum_probs=110.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCCh
Q psy2356         246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI  325 (529)
Q Consensus       246 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  325 (529)
                      |.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+.               
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------   67 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK---------------   67 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC---------------
Confidence            44555555555555555555555555555555555555555555555555555555555443333               


Q ss_pred             hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2356         326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL  405 (529)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  405 (529)
                                                                                .|.||||+|+..|+.+++++|+
T Consensus        68 ----------------------------------------------------------~g~t~L~~A~~~~~~~~v~~Ll   89 (167)
T 3v31_A           68 ----------------------------------------------------------GRESALSLACSKGYTDIVKMLL   89 (167)
T ss_dssp             ----------------------------------------------------------TCCCHHHHHHHHTCHHHHHHHH
T ss_pred             ----------------------------------------------------------CCCcHHHHHHHcCCHHHHHHHH
Confidence                                                                      3445555566666666666555


Q ss_pred             hcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchH
Q psy2356         406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV  485 (529)
Q Consensus       406 ~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  485 (529)
                      ++                   |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.++
T Consensus        90 ~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  150 (167)
T 3v31_A           90 DC-------------------GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSV  150 (167)
T ss_dssp             HH-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HC-------------------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            54                   45567777788899999998888999999999999888888889999999999999999


Q ss_pred             HHHhhcccchhh
Q psy2356         486 EESLKGVTETLI  497 (529)
Q Consensus       486 ~~~L~~~~~~~~  497 (529)
                      +++|+++...+.
T Consensus       151 ~~~L~~~~~~~~  162 (167)
T 3v31_A          151 QQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999888877665

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.5e-28  Score=203.39  Aligned_cols=67  Identities=40%  Similarity=0.587  Sum_probs=46.5

Q ss_pred             CCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhccc
Q psy2356         427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVT  493 (529)
Q Consensus       427 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  493 (529)
                      |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|++.|+.+++++|++++
T Consensus       103 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            3444555666777777777777777777777777777777777777777777777777777776653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=4.9e-29  Score=225.88  Aligned_cols=194  Identities=26%  Similarity=0.315  Sum_probs=148.8

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHHcCChhHHHHHHHCCC-CCCCCCCCCCchHHHHhhc
Q psy2356           4 GHTSFLRAARAGHLDKIIEHLKNNVD--INTANANGLNALHLASKDGHLHVVTELLSRGA-NVDSATKKGNTALHIASLG   80 (529)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~~~~~l~~a~~~   80 (529)
                      +.+++|.|+..|+++.++.+++.+.+  +|..|..|+||||+|+..|+.++|++|++.|+ +++..+..|.||+|+|+..
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            35677888899999999998887655  78888999999999999999999999999988 8887777766666655311


Q ss_pred             CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHH
Q psy2356          81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHI  160 (529)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~  160 (529)
                      ..                     ...++.+++++|++.+                                         
T Consensus       156 ~~---------------------~~~~~~~~v~~Ll~~g-----------------------------------------  173 (276)
T 4hbd_A          156 TL---------------------KTQDDIETVLQLFRLG-----------------------------------------  173 (276)
T ss_dssp             CC---------------------CSHHHHHHHHHHHHHS-----------------------------------------
T ss_pred             Hh---------------------hhhhhHHHHHHHHHcC-----------------------------------------
Confidence            00                     0122233333333222                                         


Q ss_pred             HhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Q psy2356         161 AAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN  240 (529)
Q Consensus       161 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  240 (529)
                                                                 ...+..+..|.||||+|+..|+.+++++|++.|++++
T Consensus       174 -------------------------------------------~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n  210 (276)
T 4hbd_A          174 -------------------------------------------NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN  210 (276)
T ss_dssp             -------------------------------------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             -------------------------------------------CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence                                                       2223445567888888888888888888888888888


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy2356         241 FSAKSGLTPLHVASFMGCMNIVIYLLQ-NDANPDIPTVRGETPLHLAARANQTDIIRILLRNG  302 (529)
Q Consensus       241 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  302 (529)
                      ..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++++
T Consensus       211 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          211 VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            888888888888888888888888888 78888888888888888888888888888888763

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=2.9e-32  Score=255.07  Aligned_cols=202  Identities=13%  Similarity=0.096  Sum_probs=129.4

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCcc--cCCCCCcHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356         214 FTPLHIASHYGNEGVANILLDKRADVNF--SAKSGLTPLHVAS-FMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN  290 (529)
Q Consensus       214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~~~~l~~a~-~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  290 (529)
                      .||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++.|.       .|.|||+.|+..|
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g  236 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYG  236 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCC
Confidence            6899999999999999999999999877  7888999999999 9999999999999774       2789999999999


Q ss_pred             CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHH---HhCchhHHHHhhh
Q psy2356         291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ---KLGYISVEESLKG  367 (529)
Q Consensus       291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~---~~~~~~~~~~l~~  367 (529)
                      +.+++++|+++|++++..+    ++++.|+..|+.+++........          ...+....   ..+..+.++++..
T Consensus       237 ~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~----------~~~~~~li~~~~~~~~~~~~~Ll~  302 (376)
T 2aja_A          237 EKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQG----------FYMLRNLIRRNDEVLLDDIRFLLS  302 (376)
T ss_dssp             TTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHH----------HHHHHHHHHHCCGGGHHHHHHHHT
T ss_pred             CHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhh----------HHHHHHHHHcchhhHHHHHHHHHh
Confidence            9999999999998876554    36778888888875532100000          00001111   1123445555533


Q ss_pred             hhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHc
Q psy2356         368 VTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE  447 (529)
Q Consensus       368 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~  447 (529)
                      ..... ...........+.|||++|+..|+.+++++|+++|                      ..++..++|++.+|-++
T Consensus       303 ~~~vk-~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----------------------~v~~~~~~~~~~~~~~~  359 (376)
T 2aja_A          303 IPGIK-ALAPTATIPGDANELLRLALRLGNQGACALLLSIP----------------------SVLALTKANNYYINETG  359 (376)
T ss_dssp             STTTG-GGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----------------------HHHHSCC----------
T ss_pred             Chhhh-hhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----------------------HHHHHHHHhcccccccc
Confidence            22110 01111334456779999999999999999999863                      34556699999999999


Q ss_pred             CcHHHHHHHHhC
Q psy2356         448 GHADMSAMLLEH  459 (529)
Q Consensus       448 ~~~~~v~~Ll~~  459 (529)
                      |..++++.-+++
T Consensus       360 ~~~~~~~~~~~~  371 (376)
T 2aja_A          360 GRLDLRAVALEH  371 (376)
T ss_dssp             ------------
T ss_pred             ccccHHHHHHHH
Confidence            999999887654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=2.8e-28  Score=202.74  Aligned_cols=112  Identities=32%  Similarity=0.345  Sum_probs=78.2

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356         213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT  292 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~  292 (529)
                      ..|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            3567777777777777777777777777777777777777777 777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCcccccccCCcHHHHHHHcCCh
Q psy2356         293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYI  325 (529)
Q Consensus       293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  325 (529)
                      +++++|+++|++++..+..|.||||+|+..|+.
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  116 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL  116 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            777777777777665555444444444333333

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=3.1e-28  Score=204.59  Aligned_cols=165  Identities=26%  Similarity=0.323  Sum_probs=120.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCCh
Q psy2356         247 LTPLHVASFMGCMNIVIYLLQNDAN-PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI  325 (529)
Q Consensus       247 ~~~l~~a~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  325 (529)
                      .+||+.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+                
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------   66 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA----------------   66 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC----------------
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhc----------------
Confidence            3455666666666666666555544 45555555566666665555556655555555544333                


Q ss_pred             hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2356         326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL  405 (529)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  405 (529)
                                                                               ..|.||||+|+..|+.+++++|+
T Consensus        67 ---------------------------------------------------------~~g~t~L~~A~~~~~~~~v~~Ll   89 (172)
T 3v30_A           67 ---------------------------------------------------------KERESALSLASTGGYTDIVGLLL   89 (172)
T ss_dssp             ---------------------------------------------------------TTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------------------------------------------ccCCCHHHHHHHCCCHHHHHHHH
Confidence                                                                     34556666777777777777776


Q ss_pred             hcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchH
Q psy2356         406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV  485 (529)
Q Consensus       406 ~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  485 (529)
                      ++                   |++++.++..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.++
T Consensus        90 ~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A           90 ER-------------------DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             TT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             Hc-------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHH
Confidence            65                   55678888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccchhhhccCCC
Q psy2356         486 EESLKGVTETLIIAKGDG  503 (529)
Q Consensus       486 ~~~L~~~~~~~~~~~~~~  503 (529)
                      +++|++++.++...+..+
T Consensus       151 ~~~L~~~~~~~~~~~~~~  168 (172)
T 3v30_A          151 QQVIENHILKLFQSNLVP  168 (172)
T ss_dssp             HHHHHHHHHHHSCC----
T ss_pred             HHHHHHHHHHHhcccCCC
Confidence            999999999887555443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.7e-28  Score=202.07  Aligned_cols=156  Identities=30%  Similarity=0.363  Sum_probs=102.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCCh
Q psy2356         246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI  325 (529)
Q Consensus       246 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  325 (529)
                      ..+||+.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|      
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A------   77 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDA------   77 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHH------
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH------
Confidence            4567777777777777777777777777777777777777777 777777777777777766555555444444      


Q ss_pred             hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2356         326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL  405 (529)
Q Consensus       326 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  405 (529)
                                                                                         +..|+.+++++|+
T Consensus        78 -------------------------------------------------------------------~~~~~~~~v~~Ll   90 (162)
T 1ihb_A           78 -------------------------------------------------------------------ARAGFLDTLQTLL   90 (162)
T ss_dssp             -------------------------------------------------------------------HHHTCHHHHHHHH
T ss_pred             -------------------------------------------------------------------HHcCCHHHHHHHH
Confidence                                                                               4444444444444


Q ss_pred             hcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCC-CcchhhcCCCHHHHHHHhCCch
Q psy2356         406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGAD-VSHAAKEGHTALSIAQKLGYIS  484 (529)
Q Consensus       406 ~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~  484 (529)
                      ++                   |++++.++..|+||||+|+..|+.+++++|+++|++ ++..|..|.|||++|+..|+.+
T Consensus        91 ~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~  151 (162)
T 1ihb_A           91 EF-------------------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  151 (162)
T ss_dssp             HT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             Hc-------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            43                   334455555666666666666666666666666665 4666666666666666666666


Q ss_pred             HHHHhhcccc
Q psy2356         485 VEESLKGVTE  494 (529)
Q Consensus       485 ~~~~L~~~~~  494 (529)
                      ++++|+++++
T Consensus       152 ~~~~Ll~~GA  161 (162)
T 1ihb_A          152 VVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHhCC
Confidence            6666666654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2.3e-27  Score=194.95  Aligned_cols=88  Identities=34%  Similarity=0.501  Sum_probs=71.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q psy2356         384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV  463 (529)
Q Consensus       384 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  463 (529)
                      .|.||||+|+..|+.+++++|+++                   |++++.++..|+||||+|+..|+.+++++|+++|+++
T Consensus        66 ~g~t~L~~A~~~~~~~~v~~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  126 (153)
T 1awc_B           66 VDRTPLHMAASEGHANIVEVLLKH-------------------GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV  126 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHc-------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            355666666666666666666665                   4556777788999999999999999999999999999


Q ss_pred             cchhhcCCCHHHHHHHhCCchHHHHhh
Q psy2356         464 SHAAKEGHTALSIAQKLGYISVEESLK  490 (529)
Q Consensus       464 ~~~~~~g~t~l~~A~~~~~~~~~~~L~  490 (529)
                      +.+|..|.|||++|+..|+.+++++|.
T Consensus       127 ~~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B          127 HTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence            999999999999999999999998873

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=2.7e-27  Score=202.71  Aligned_cols=161  Identities=25%  Similarity=0.278  Sum_probs=146.1

Q ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy2356         206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHL  285 (529)
Q Consensus       206 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  285 (529)
                      ++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356         286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL  365 (529)
Q Consensus       286 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  365 (529)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++. +.+++..+..|.||+++|+..++.+++++|
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L  186 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGRQEVIKIF  186 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999865 566667777777777777777777776666


Q ss_pred             hh
Q psy2356         366 KG  367 (529)
Q Consensus       366 ~~  367 (529)
                      .+
T Consensus       187 l~  188 (192)
T 2rfm_A          187 TE  188 (192)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2.7e-27  Score=200.09  Aligned_cols=167  Identities=25%  Similarity=0.313  Sum_probs=120.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356         212 SGFTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN  290 (529)
Q Consensus       212 ~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  290 (529)
                      .+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            345677777777777777777776 4556777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhh
Q psy2356         291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTE  370 (529)
Q Consensus       291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~  370 (529)
                      +.+++++|+++|++++..+..                                                           
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~-----------------------------------------------------------  104 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEH-----------------------------------------------------------  104 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTT-----------------------------------------------------------
T ss_pred             CHHHHHHHHHcCCCCCccCCC-----------------------------------------------------------
Confidence            777777777777766554443                                                           


Q ss_pred             HHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcH
Q psy2356         371 TLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA  450 (529)
Q Consensus       371 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~  450 (529)
                                    |.||||+|+..|+.+++++|+++                   |++++.++..|.|||++|+..++.
T Consensus       105 --------------g~t~L~~A~~~~~~~~v~~Ll~~-------------------ga~~~~~~~~g~tpl~~A~~~~~~  151 (179)
T 3f6q_A          105 --------------GNVPLHYACFWGQDQVAEDLVAN-------------------GALVSICNKYGEMPVDKAKAPLRE  151 (179)
T ss_dssp             --------------SCCHHHHHHHTTCHHHHHHHHHT-------------------TCCSSBCCTTSCCGGGGSCHHHHH
T ss_pred             --------------CCCHHHHHHHcCCHHHHHHHHHC-------------------CCCcchhccCCCCcHHHHHHHHHH
Confidence                          44555556666666666666554                   556678888899999999999999


Q ss_pred             HHHHHHHhCCCCCcchhhcC
Q psy2356         451 DMSAMLLEHGADVSHAAKEG  470 (529)
Q Consensus       451 ~~v~~Ll~~g~~~~~~~~~g  470 (529)
                      +++++|+++|++++..+..+
T Consensus       152 ~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          152 LLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHHHTTCCCSCBCCCC
T ss_pred             HHHHHHHHhhcCcccCCccc
Confidence            99999999999987765543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=8.3e-27  Score=194.82  Aligned_cols=156  Identities=26%  Similarity=0.349  Sum_probs=118.3

Q ss_pred             CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356         154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL  233 (529)
Q Consensus       154 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  233 (529)
                      +.|+|+.|+..|+.+++++|++.+                          .+++..+..|.||||+|+..|+.+++++|+
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~--------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   56 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQE--------------------------NVINHTDEEGFTPLMWAAAHGQIAVVEFLL   56 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHS--------------------------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcC--------------------------CCcCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            456777777777777777777533                          344556667778888888888888888888


Q ss_pred             hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCC
Q psy2356         234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH  313 (529)
Q Consensus       234 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~  313 (529)
                      ++|++++..+..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus        57 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  136 (167)
T 3v31_A           57 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY  136 (167)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            88777777777777888888888888888888887777777777778888888888888888888888887777777777


Q ss_pred             cHHHHHHHcCChhHHHHhhhhc
Q psy2356         314 TALSIAQKLGYISVEESLGAAE  335 (529)
Q Consensus       314 t~l~~a~~~~~~~~~~~l~~~~  335 (529)
                      ||+++|+..|+.+++++|++..
T Consensus       137 t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          137 NSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHHH
Confidence            8888888778877777776544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=9.8e-27  Score=194.55  Aligned_cols=153  Identities=35%  Similarity=0.543  Sum_probs=112.0

Q ss_pred             cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy2356         155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD  234 (529)
Q Consensus       155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  234 (529)
                      .++++.|+..|+.+++++|++.                          +.+++..+..|.||||+|+..|+.+++++|++
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~--------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   68 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMAN--------------------------GADVNAEDASGWTPLHLAAFNGHLEIVEVLLK   68 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT--------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHHcCCHHHHHHHHHC--------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3566777777777777777643                          33445566667777777777777777777777


Q ss_pred             CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCc
Q psy2356         235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHT  314 (529)
Q Consensus       235 ~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  314 (529)
                      +|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus        69 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  148 (169)
T 2y1l_E           69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT  148 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCChhHHHHhhh
Q psy2356         315 ALSIAQKLGYISVEESLGA  333 (529)
Q Consensus       315 ~l~~a~~~~~~~~~~~l~~  333 (529)
                      |+++|+..|+.+++++|++
T Consensus       149 ~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          149 AFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHH
Confidence            7777777777777777754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.8e-30  Score=226.55  Aligned_cols=191  Identities=23%  Similarity=0.208  Sum_probs=114.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356         213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT  292 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~  292 (529)
                      +.|+||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus        21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~  100 (229)
T 2vge_A           21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT  100 (229)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            34455556666666666666666666555555566666666666666666666666666655555566666666666666


Q ss_pred             HHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHH
Q psy2356         293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL  372 (529)
Q Consensus       293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~  372 (529)
                      +++++|+++|++++..+                                                               
T Consensus       101 ~~v~~Ll~~ga~~~~~~---------------------------------------------------------------  117 (229)
T 2vge_A          101 VICMALVQHGAAIFATT---------------------------------------------------------------  117 (229)
T ss_dssp             HHHHHHHTTTCCTTCCC---------------------------------------------------------------
T ss_pred             HHHHHHHHcCCCccccc---------------------------------------------------------------
Confidence            66666666555554443                                                               


Q ss_pred             HHhhcCCCCCCCCchHHHHH--HHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcH
Q psy2356         373 IIAKGDGEKHKNGLTPLHLC--AQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA  450 (529)
Q Consensus       373 ~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~  450 (529)
                               +..|.||||+|  +..|+.+++++|+++                   |++++.++..|.||++.++..+. 
T Consensus       118 ---------~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-------------------ga~~~~~~~~~~~~l~~~~~~~~-  168 (229)
T 2vge_A          118 ---------LSDGATAFEKCDPYREGYADCATYLADV-------------------EQSMGLMNSGAVYALWDYSAEFG-  168 (229)
T ss_dssp             ---------SSTTCCTGGGCCTTSTTHHHHHHHHHHH-------------------HHHTTTSGGGEEEESSCBCCSST-
T ss_pred             ---------CCCCCCHHHHHHHHhcChHHHHHHHHHc-------------------CCCcccccCCchHHHHHHhhccc-
Confidence                     12345555555  555666555555554                   34456666667777775544432 


Q ss_pred             HHHHHHHhCCCC--CcchhhcCCCHHHHHHHhCCchHHHH-hhcccchhh
Q psy2356         451 DMSAMLLEHGAD--VSHAAKEGHTALSIAQKLGYISVEES-LKGVTETLI  497 (529)
Q Consensus       451 ~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~-L~~~~~~~~  497 (529)
                        +++|++.|++  ++.+|..|.|||++|+..|+.++|+. +++..+.+.
T Consensus       169 --~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~~  216 (229)
T 2vge_A          169 --DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVK  216 (229)
T ss_dssp             --TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCCC
T ss_pred             --cccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCCC
Confidence              2566777777  55667778888888888888887764 444444444

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2.8e-27  Score=200.01  Aligned_cols=164  Identities=24%  Similarity=0.297  Sum_probs=129.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcC
Q psy2356         245 SGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG  323 (529)
Q Consensus       245 ~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  323 (529)
                      .+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+.             
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------------   70 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-------------   70 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-------------
Confidence            355677777777777777777776 556677777777777777777777777777777776655443             


Q ss_pred             ChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy2356         324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL  403 (529)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  403 (529)
                                                                                  .|.||||+|+..|+.+++++
T Consensus        71 ------------------------------------------------------------~g~t~L~~A~~~~~~~~v~~   90 (179)
T 3f6q_A           71 ------------------------------------------------------------GDDTPLHLAASHGHRDIVQK   90 (179)
T ss_dssp             ------------------------------------------------------------TCCCHHHHHHHTTCHHHHHH
T ss_pred             ------------------------------------------------------------CCCCHHHHHHHcCCHHHHHH
Confidence                                                                        34566666666677776666


Q ss_pred             HHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCc
Q psy2356         404 LLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYI  483 (529)
Q Consensus       404 Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  483 (529)
                      |+++                   |++++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||+++|+..++.
T Consensus        91 Ll~~-------------------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  151 (179)
T 3f6q_A           91 LLQY-------------------KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE  151 (179)
T ss_dssp             HHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHH
T ss_pred             HHHc-------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHH
Confidence            6665                   556788888999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcccchhhhcc
Q psy2356         484 SVEESLKGVTETLIIAK  500 (529)
Q Consensus       484 ~~~~~L~~~~~~~~~~~  500 (529)
                      +++++|++.+.++....
T Consensus       152 ~~~~~L~~~g~~~~~~~  168 (179)
T 3f6q_A          152 LLRERAEKMGQNLNRIP  168 (179)
T ss_dssp             HHHHHHHHTTCCCSCBC
T ss_pred             HHHHHHHHhhcCcccCC
Confidence            99999999999887543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.9e-27  Score=198.27  Aligned_cols=157  Identities=33%  Similarity=0.483  Sum_probs=87.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHc
Q psy2356         244 KSGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKL  322 (529)
Q Consensus       244 ~~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  322 (529)
                      ..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.         
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~---------   76 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL---------   76 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC---------
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCC---------
Confidence            3445566666666666666666553 444555555556666666666666666666666655554444333         


Q ss_pred             CChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHH
Q psy2356         323 GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAE  402 (529)
Q Consensus       323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  402 (529)
                                                                                      ||||+|+..|+.++++
T Consensus        77 ----------------------------------------------------------------t~L~~A~~~~~~~~v~   92 (165)
T 3twr_A           77 ----------------------------------------------------------------VPLHNACSYGHYEVAE   92 (165)
T ss_dssp             ----------------------------------------------------------------CHHHHHHHTTCHHHHH
T ss_pred             ----------------------------------------------------------------CHHHHHHHcCcHHHHH
Confidence                                                                            3333334444444444


Q ss_pred             HHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCC
Q psy2356         403 LLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY  482 (529)
Q Consensus       403 ~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  482 (529)
                      +|+++                   |++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|.+ ++
T Consensus        93 ~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~  152 (165)
T 3twr_A           93 LLVKH-------------------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GD  152 (165)
T ss_dssp             HHHHT-------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TC
T ss_pred             HHHhC-------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CC
Confidence            44333                   33445555556666666666666666666666666666666666666666554 55


Q ss_pred             chHHHHhhccc
Q psy2356         483 ISVEESLKGVT  493 (529)
Q Consensus       483 ~~~~~~L~~~~  493 (529)
                      .+++++|++.+
T Consensus       153 ~~i~~~L~~~g  163 (165)
T 3twr_A          153 TDIQDLLRGDA  163 (165)
T ss_dssp             HHHHHHHHTC-
T ss_pred             hHHHHHHhhcc
Confidence            56666665544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2e-26  Score=189.21  Aligned_cols=149  Identities=28%  Similarity=0.414  Sum_probs=129.6

Q ss_pred             CHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy2356         156 PALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK  235 (529)
Q Consensus       156 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  235 (529)
                      ++|+.|+..|+.+++++|++.|.+.                          + .+..|.||||+|+..|+.+++++|++.
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~--------------------------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   56 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPF--------------------------T-TDWLGTSPLHLAAQYGHFSTTEVLLRA   56 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC--------------------------C-CCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCC--------------------------C-cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            5788888888888888888765432                          2 355688999999999999999999999


Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcH
Q psy2356         236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA  315 (529)
Q Consensus       236 g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  315 (529)
                      |++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus        57 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  136 (153)
T 1awc_B           57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            99998888889999999999999999999999999999988899999999999999999999999999999888899999


Q ss_pred             HHHHHHcCChhHHHHh
Q psy2356         316 LSIAQKLGYISVEESL  331 (529)
Q Consensus       316 l~~a~~~~~~~~~~~l  331 (529)
                      +++|+..|+.+++++|
T Consensus       137 l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          137 FDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999988887

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=9.6e-26  Score=186.05  Aligned_cols=127  Identities=27%  Similarity=0.463  Sum_probs=83.1

Q ss_pred             CCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356         205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLH  284 (529)
Q Consensus       205 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  284 (529)
                      +++..+..|.||||+ +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH  106 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            444555566666666 6666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356         285 LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA  333 (529)
Q Consensus       285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  333 (529)
                      +|+..|+.+++++|+++ ++++..+..|.||+++|+..|+.+++++|++
T Consensus       107 ~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          107 LAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            66666666666666666 6666666666666666666666666666643

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=6.7e-26  Score=187.00  Aligned_cols=149  Identities=28%  Similarity=0.386  Sum_probs=134.8

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356         214 FTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT  292 (529)
Q Consensus       214 ~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~  292 (529)
                      .|+|+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            5899999999999999999998 44889999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356         293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL  365 (529)
Q Consensus       293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  365 (529)
                      +++++|+++|++++..+..|.||||+|+..|+.+++++|++.  .+++..+..|.|||++|+..++.+++++|
T Consensus        82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  152 (156)
T 1bd8_A           82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            999999999999999999999999999999999999999876  66677777777777777666666666666

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=3.6e-26  Score=190.52  Aligned_cols=155  Identities=30%  Similarity=0.406  Sum_probs=133.5

Q ss_pred             CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356         154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL  233 (529)
Q Consensus       154 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  233 (529)
                      +.++|+.|+..|+.+++++|++                         ..+.+++..+..|.||||+|+..|+.+++++|+
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~-------------------------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   62 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCT-------------------------VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL   62 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCC-------------------------TTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHHHHhCCHHHHHHHHH-------------------------cCCCCccccccCCCCHHHHHHHcChHHHHHHHH
Confidence            3456666777777777776665                         233445566777889999999999999999999


Q ss_pred             hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCC
Q psy2356         234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH  313 (529)
Q Consensus       234 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~  313 (529)
                      ++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        63 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  142 (165)
T 3twr_A           63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN  142 (165)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCChhHHHHhhhh
Q psy2356         314 TALSIAQKLGYISVEESLGAA  334 (529)
Q Consensus       314 t~l~~a~~~~~~~~~~~l~~~  334 (529)
                      ||+++|.. ++.+++++|++.
T Consensus       143 t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A          143 TPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             CTGGGSCT-TCHHHHHHHHTC
T ss_pred             ChhHhHhc-CChHHHHHHhhc
Confidence            99999766 888999999654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.8e-27  Score=211.01  Aligned_cols=187  Identities=23%  Similarity=0.289  Sum_probs=112.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2356         212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ  291 (529)
Q Consensus       212 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  291 (529)
                      .|.||||.|+..++.+.++.|+++|++++.. ..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            4667777777777777777777777777654 556777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhH
Q psy2356         292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTET  371 (529)
Q Consensus       292 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~  371 (529)
                      .+++++|+++|++++..+..                                                            
T Consensus        83 ~~~v~~Ll~~ga~~~~~d~~------------------------------------------------------------  102 (239)
T 1ycs_B           83 TEIVKFLVQFGVNVNAADSD------------------------------------------------------------  102 (239)
T ss_dssp             HHHHHHHHHHTCCTTCCCTT------------------------------------------------------------
T ss_pred             HHHHHHHHHcCCCCCccCCC------------------------------------------------------------
Confidence            77777777777776655444                                                            


Q ss_pred             HHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCC-CHHHHH--HHcC
Q psy2356         372 LIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF-TPLHLS--ASEG  448 (529)
Q Consensus       372 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~-t~L~~A--~~~~  448 (529)
                                   |.||||+|+..|+.+++++|+++                   |++++.++..|. ||||+|  +..|
T Consensus       103 -------------g~tpL~~A~~~~~~~~v~~Ll~~-------------------ga~~~~~~~~~~~t~l~~a~~~~~g  150 (239)
T 1ycs_B          103 -------------GWTPLHCAASCNNVQVCKFLVES-------------------GAAVFAMTYSDMQTAADKCEEMEEG  150 (239)
T ss_dssp             -------------CCCHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCCCSSSCCCHHHHCCSSSTT
T ss_pred             -------------CCCHHHHHHHcCCHHHHHHHHHc-------------------CCCcceecCCCCcchHHHHHHhhhc
Confidence                         44555666666666666666665                   556677777676 999999  7889


Q ss_pred             cHHHHHHHHhCCCCCcch---------hhcCCCHHHHHHHhCCchHHHHhhccc
Q psy2356         449 HADMSAMLLEHGADVSHA---------AKEGHTALSIAQKLGYISVEESLKGVT  493 (529)
Q Consensus       449 ~~~~v~~Ll~~g~~~~~~---------~~~g~t~l~~A~~~~~~~~~~~L~~~~  493 (529)
                      +.+++++|+++|++++..         +..+.+++++|.+.|.  +++.|....
T Consensus       151 ~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~  202 (239)
T 1ycs_B          151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED  202 (239)
T ss_dssp             CCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT
T ss_pred             cHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC
Confidence            999999999999988876         4457888888777665  344444443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.9e-28  Score=214.85  Aligned_cols=182  Identities=21%  Similarity=0.107  Sum_probs=150.8

Q ss_pred             cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy2356         155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD  234 (529)
Q Consensus       155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~  234 (529)
                      .|+|+.|+..|+.+++++|++.|                          .+++..+..|.||||+|+..|+.+++++|++
T Consensus        22 ~t~L~~A~~~g~~~~v~~Ll~~g--------------------------~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A           22 LVLLLDAALTGELEVVQQAVKEM--------------------------NDPSQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHS--------------------------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcC--------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45666677777777777776433                          4556678889999999999999999999999


Q ss_pred             CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHcCCHHHHHHHHHCCCCccccccc
Q psy2356         235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLA--ARANQTDIIRILLRNGAQVDARARE  311 (529)
Q Consensus       235 ~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~  311 (529)
                      .|++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|  +..|+.+++++|+++|++++..+..
T Consensus        76 ~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~  155 (229)
T 2vge_A           76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG  155 (229)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCC
Confidence            999999999999999999999999999999999999999987 5999999999  9999999999999999999999999


Q ss_pred             CCcHHHHHHHcCChhHHHHhhhhc-ccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356         312 GHTALSIAQKLGYISVEESLGAAE-RSQLKKRGREGHTALSIAQKLGYISVEESL  365 (529)
Q Consensus       312 g~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  365 (529)
                      |.++++.++..+..   +.++... ..+++..+..|+||||+|+..|+.++++..
T Consensus       156 ~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          156 AVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             EEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             chHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            99998865544433   3343332 223677788888888888888888877653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.7e-26  Score=194.67  Aligned_cols=165  Identities=16%  Similarity=0.149  Sum_probs=118.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCH----HHHHHHHHCCCCcccccccCCcHHHHHHH
Q psy2356         247 LTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLAARANQT----DIIRILLRNGAQVDARAREGHTALSIAQK  321 (529)
Q Consensus       247 ~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~  321 (529)
                      .++|+.|+..|+.+.++.+++.+.  +..+ ..|.||||+|+..++.    +++++|+++|++++.++..|+||||+|+.
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            456666777777776666666543  3333 4567777777777654    47777777777777777666666666655


Q ss_pred             cCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHH
Q psy2356         322 LGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVA  401 (529)
Q Consensus       322 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  401 (529)
                      .++.++.+.                                                                   .   
T Consensus        85 ~~~~~~~~~-------------------------------------------------------------------~---   94 (186)
T 3t8k_A           85 GGGNDITGT-------------------------------------------------------------------T---   94 (186)
T ss_dssp             HCTTCHHHH-------------------------------------------------------------------H---
T ss_pred             cCCcchhhH-------------------------------------------------------------------H---
Confidence            443322110                                                                   1   


Q ss_pred             HHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCC-CHHHHHHHcC-----cHHHHHHHHh-CCCCCcchhhcCCCHH
Q psy2356         402 ELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF-TPLHLSASEG-----HADMSAMLLE-HGADVSHAAKEGHTAL  474 (529)
Q Consensus       402 ~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~g~~~~~~~~~g~t~l  474 (529)
                                      +++++|+++|+|+|.+|..|+ ||||+|+..+     ..+++++|++ +|++++.+|..|.|||
T Consensus        95 ----------------~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL  158 (186)
T 3t8k_A           95 ----------------ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL  158 (186)
T ss_dssp             ----------------HHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             ----------------HHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence                            344555566778899999999 9999999843     4579999999 8999999999999999


Q ss_pred             HHHHHhCCchHHHHhhcccchhhhc
Q psy2356         475 SIAQKLGYISVEESLKGVTETLIIA  499 (529)
Q Consensus       475 ~~A~~~~~~~~~~~L~~~~~~~~~~  499 (529)
                      |+|++.|+.+++++|+++...+.+.
T Consensus       159 ~~A~~~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999887766543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=3.2e-26  Score=202.95  Aligned_cols=100  Identities=29%  Similarity=0.415  Sum_probs=85.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCC
Q psy2356         382 HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA  461 (529)
Q Consensus       382 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  461 (529)
                      +..|.||||+|+..|+.+++++|+++                   |++++.+|..|+||||+|+..|+.++|++|+++|+
T Consensus        67 d~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  127 (239)
T 1ycs_B           67 NDEGITALHNAVCAGHTEIVKFLVQF-------------------GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA  127 (239)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHH-------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34456666777777777777766665                   56778889999999999999999999999999999


Q ss_pred             CCcchhhcCC-CHHHHH--HHhCCchHHHHhhcccchhhhcc
Q psy2356         462 DVSHAAKEGH-TALSIA--QKLGYISVEESLKGVTETLIIAK  500 (529)
Q Consensus       462 ~~~~~~~~g~-t~l~~A--~~~~~~~~~~~L~~~~~~~~~~~  500 (529)
                      +++..+..|. |||++|  +..|+.+++++|++.++++...+
T Consensus       128 ~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~  169 (239)
T 1ycs_B          128 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN  169 (239)
T ss_dssp             CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred             CcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccc
Confidence            9999998877 999999  78899999999999999887653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=6.8e-25  Score=175.98  Aligned_cols=129  Identities=26%  Similarity=0.308  Sum_probs=77.6

Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcH
Q psy2356         204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR-GETP  282 (529)
Q Consensus       204 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-~~t~  282 (529)
                      .+++..+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+. ++.+++++|++.|++++..+.. |.||
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            3455555556666666666666666666666666666665666666666666 6666666666666666665555 5666


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356         283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA  333 (529)
Q Consensus       283 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  333 (529)
                      ||+|+..|+.+++++|+++|++++..+..|.||+++|+..++.+++++|++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            666666666666666666666665555555555555555555555555543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=4.4e-25  Score=181.70  Aligned_cols=142  Identities=23%  Similarity=0.323  Sum_probs=81.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHc
Q psy2356         243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKL  322 (529)
Q Consensus       243 ~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  322 (529)
                      +..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+ .|+.+++++|+++|++++..+..           
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~-----------   76 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA-----------   76 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT-----------
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCC-----------
Confidence            344555555555555555555555555555555555555555553 55555555555555555444333           


Q ss_pred             CChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCch-HHHHHHHcCCHHHH
Q psy2356         323 GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLT-PLHLCAQEDRVGVA  401 (529)
Q Consensus       323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~  401 (529)
                                                                                    |.| |||+|+..|+.+++
T Consensus        77 --------------------------------------------------------------g~ttpL~~A~~~~~~~~v   94 (156)
T 1bi7_B           77 --------------------------------------------------------------TLTRPVHDAAREGFLDTL   94 (156)
T ss_dssp             --------------------------------------------------------------TCCCHHHHHHHHTCHHHH
T ss_pred             --------------------------------------------------------------CCcHHHHHHHHCCCHHHH
Confidence                                                                          444 66666666666666


Q ss_pred             HHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHH
Q psy2356         402 ELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA  477 (529)
Q Consensus       402 ~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  477 (529)
                      ++|+++                   |++++.++..|+||||+|+..|+.+++++|+++|++++..+..|.||.+.+
T Consensus        95 ~~Ll~~-------------------ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           95 VVLHRA-------------------GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHH-------------------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHc-------------------CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            666654                   556678888899999999999999999999999999999999999987754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=1.5e-24  Score=173.98  Aligned_cols=131  Identities=18%  Similarity=0.250  Sum_probs=124.1

Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccccc-CCc
Q psy2356         236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARARE-GHT  314 (529)
Q Consensus       236 g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t  314 (529)
                      +++++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+. ++.+++++|+++|++++..+.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            46788999999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhh
Q psy2356         315 ALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGV  368 (529)
Q Consensus       315 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~  368 (529)
                      |||+|+..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|.+.
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999865 477889999999999999999999999998654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=4.4e-24  Score=175.71  Aligned_cols=144  Identities=26%  Similarity=0.304  Sum_probs=119.8

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-HHHHH
Q psy2356         208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET-PLHLA  286 (529)
Q Consensus       208 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t-~l~~a  286 (529)
                      ..+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|++.|++++..+..|.| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            45667899999999999999999999999999999999999999985 99999999999999999999999999 99999


Q ss_pred             HHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHH
Q psy2356         287 ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIA  353 (529)
Q Consensus       287 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a  353 (529)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++. +.+++..+..|.++.+.+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C-----------------
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccC
Confidence            999999999999999999999999999999999999999999999765 567788888888887643

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=2.3e-23  Score=166.96  Aligned_cols=121  Identities=32%  Similarity=0.503  Sum_probs=109.3

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      ..|.|+||.||..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.|         
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t---------   82 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFT---------   82 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC---------
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC---------
Confidence            46889999999999999999999999999999999999999999999999999999999999877766555         


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLEND  148 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~  148 (529)
                                       |||+|+..|+.+++++|++++++    +..|.|||++|+..|+.+++++|++.+
T Consensus        83 -----------------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           83 -----------------PLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             -----------------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             -----------------HHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                             55567889999999999999766    678899999999999999999998753

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=3.2e-23  Score=166.17  Aligned_cols=123  Identities=36%  Similarity=0.441  Sum_probs=119.0

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356         211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN  290 (529)
Q Consensus       211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  290 (529)
                      ..+.|+||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356         291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA  333 (529)
Q Consensus       291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  333 (529)
                      +.+++++|+++|++++..+..|.||+++|+..|+.+++++|++
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999975

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=5.7e-24  Score=179.27  Aligned_cols=156  Identities=15%  Similarity=0.092  Sum_probs=138.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356         213 GFTPLHIASHYGNEGVANILLDKRADVNFSA-KSGLTPLHVASFMGCM----NIVIYLLQNDANPDIPTVRGETPLHLAA  287 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~~~l~~a~~~~~~----~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  287 (529)
                      +.++|+.|+..|+.+.++.++..+.  +..+ ..|+||||+|+.+++.    +++++|++.|++++.++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            3588999999999999999998764  4444 6799999999999975    5999999999999999999999999999


Q ss_pred             HcCC------HHHHHHHHHCCCCcccccccCC-cHHHHHHHcCC-----hhHHHHhhhhcccccccCCCCCCcHHHHHHH
Q psy2356         288 RANQ------TDIIRILLRNGAQVDARAREGH-TALSIAQKLGY-----ISVEESLGAAERSQLKKRGREGHTALSIAQK  355 (529)
Q Consensus       288 ~~~~------~~~~~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~  355 (529)
                      ..++      .+++++|+++|++++.+|..|. ||||+|+..+.     .+++++|++..+.+++..+..|.||||+|++
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            9886      6899999999999999999999 99999999543     5689999887888999999999999999999


Q ss_pred             hCchhHHHHhhhhhh
Q psy2356         356 LGYISVEESLKGVTE  370 (529)
Q Consensus       356 ~~~~~~~~~l~~~~~  370 (529)
                      .++.++++.|.+...
T Consensus       164 ~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          164 CQKPIALKMMEDYIK  178 (186)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999999988866544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=6.5e-23  Score=162.38  Aligned_cols=121  Identities=44%  Similarity=0.678  Sum_probs=110.1

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      +|.||||.||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.           
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-----------   69 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-----------   69 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-----------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCC-----------
Confidence            699999999999999999999999999999999999999999999999999999999999987766554           


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCC
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDT  149 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~  149 (529)
                                     |||++|+..|+.+++++|++.+.+    +..|.||+++|+..|+.+++++|+++++
T Consensus        70 ---------------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           70 ---------------TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             ---------------CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ---------------cHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence                           555667889999999999999766    6778999999999999999999998765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.5e-22  Score=160.32  Aligned_cols=124  Identities=40%  Similarity=0.620  Sum_probs=119.3

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2356         212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ  291 (529)
Q Consensus       212 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  291 (529)
                      +|.||||.|+..|+.+++++|+++|++++..+..|.|||+.|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356         292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAE  335 (529)
Q Consensus       292 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  335 (529)
                      .+++++|+++|++++..+..|.||+++|+..|+.+++++|++..
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999997643

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.6e-23  Score=168.35  Aligned_cols=129  Identities=31%  Similarity=0.381  Sum_probs=119.4

Q ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356         204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL  283 (529)
Q Consensus       204 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  283 (529)
                      .++ .++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.|||
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL   80 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHH
Confidence            344 5778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356         284 HLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA  333 (529)
Q Consensus       284 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  333 (529)
                      |+|+..|+.+++++|+++|++++..+..|.||+++|+..+..++++++.+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            99999999999999999999999999999999999999888888887744

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.7e-23  Score=168.19  Aligned_cols=68  Identities=22%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             CCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356         427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE  494 (529)
Q Consensus       427 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  494 (529)
                      |++++.++..|+||||+|+..|+.+++++|+++|++++..|..|.||+++|+..+..+++++|.+...
T Consensus        66 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            44556666677788888888888888888888888888777888888888877777777777665543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=3.1e-23  Score=175.55  Aligned_cols=137  Identities=24%  Similarity=0.305  Sum_probs=121.6

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHH
Q psy2356         210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLAAR  288 (529)
Q Consensus       210 ~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~  288 (529)
                      +..|.||||.|+..|+.++++.|++ |++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3467899999999999999999999 99999999999999999999999999999999999999888 889999999999


Q ss_pred             cCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356         289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL  365 (529)
Q Consensus       289 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  365 (529)
                      .|+.+++++|+++|++++.++..|.||+++|+..++.                  ..+.+++++++..|..+++++|
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence            9999999999999999999999999999999874432                  2345677777777777777666

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=179.11  Aligned_cols=140  Identities=25%  Similarity=0.218  Sum_probs=122.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcc------cCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356         213 GFTPLHIASHYGNEGVANILLDKRADVNF------SAKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIPTVRGETPL  283 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~l  283 (529)
                      ..++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|+++|++++..|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            35679999999999999999999999987      688999999999997   899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCch
Q psy2356         284 HLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI  359 (529)
Q Consensus       284 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  359 (529)
                      |+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|++....       .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999775532       467888888777653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=3.2e-22  Score=157.29  Aligned_cols=116  Identities=24%  Similarity=0.309  Sum_probs=106.8

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356         211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN  290 (529)
Q Consensus       211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  290 (529)
                      ..+.|+||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..+
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChh
Q psy2356         291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYIS  326 (529)
Q Consensus       291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  326 (529)
                      +.+++++|+++|++++..+..|.||+++|...+..+
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            999999999999999999999999999995443333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=7.3e-22  Score=175.17  Aligned_cols=136  Identities=24%  Similarity=0.309  Sum_probs=120.0

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHc
Q psy2356         211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLAARA  289 (529)
Q Consensus       211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~~  289 (529)
                      ..|.||||+|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            357899999999999999999999 99999999999999999999999999999999999999988 7899999999999


Q ss_pred             CCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356         290 NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL  365 (529)
Q Consensus       290 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  365 (529)
                      |+.+++++|+++|++++..+..|.||+|+|+..+.                  ...+.+||++|+..|+.++++++
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHH
Confidence            99999999999999999999999999999975222                  13456666666666666666665

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=8e-22  Score=166.83  Aligned_cols=133  Identities=23%  Similarity=0.284  Sum_probs=118.5

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCC-CCCCchHHHHhhcC
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSAT-KKGNTALHIASLGE   81 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~-~~~~~~l~~a~~~~   81 (529)
                      +|.||||.||..|+.+++++|++ |.+++..|..|+||||+|+..|+.+++++|+++|++++.++ ..            
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~------------  109 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG------------  109 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC------------
Confidence            68999999999999999999999 99999999999999999999999999999999999998766 44            


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA  157 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  157 (529)
                                    |.||||+|+..|+.+++++|++++++    +..|.|||++|+..++.             ....++
T Consensus       110 --------------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------------~~~~~~  162 (183)
T 3deo_A          110 --------------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------TPKGNP  162 (183)
T ss_dssp             --------------SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-------------CCCCSH
T ss_pred             --------------CCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-------------cccccH
Confidence                          44566677899999999999999776    78899999999986544             344689


Q ss_pred             HHHHhhCCChHHHHHHHh
Q psy2356         158 LHIAAKKDDTKAAKLLLE  175 (529)
Q Consensus       158 l~~a~~~~~~~~~~~ll~  175 (529)
                      +++|+..|..+++++|.+
T Consensus       163 l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          163 MQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCHHHHHHHHHH
Confidence            999999999999999875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=9.4e-22  Score=154.57  Aligned_cols=114  Identities=28%  Similarity=0.469  Sum_probs=98.9

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      +.|.|+||.||..|+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|+++|++++.++..|.|         
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t---------   75 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT---------   75 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCC---------
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC---------
Confidence            46899999999999999999999999999999999999999999999999999999999999887766555         


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHH
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVV  141 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v  141 (529)
                                       |||+|+..|+.+++++|++++++    +..|.||+++|...+..+++
T Consensus        76 -----------------pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           76 -----------------PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL  122 (123)
T ss_dssp             -----------------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred             -----------------HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence                             55566889999999999999876    77899999999554444443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=1.3e-21  Score=173.46  Aligned_cols=138  Identities=22%  Similarity=0.266  Sum_probs=121.7

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCC-CCCCchHHHHhhc
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSAT-KKGNTALHIASLG   80 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~-~~~~~~l~~a~~~   80 (529)
                      .+|.||||.||+.|+.++|++|++ |++++..|..|+||||+|+..|+.++|++|+++|++++.++ ..           
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-----------  110 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-----------  110 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS-----------
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCC-----------
Confidence            368999999999999999999999 99999999999999999999999999999999999998766 44           


Q ss_pred             CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcC
Q psy2356          81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLP  156 (529)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  156 (529)
                                     |.||||+|+..|+.+++++|++++++    +..|.|||++|+..++.             ....+
T Consensus       111 ---------------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-------------~~~~~  162 (244)
T 3ui2_A          111 ---------------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------TPKGN  162 (244)
T ss_dssp             ---------------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT-------------CCCSS
T ss_pred             ---------------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc-------------cCCCC
Confidence                           45566677899999999999999876    78899999999863322             45679


Q ss_pred             HHHHHhhCCChHHHHHHHhccCC
Q psy2356         157 ALHIAAKKDDTKAAKLLLEVSCT  179 (529)
Q Consensus       157 ~l~~a~~~~~~~~~~~ll~~~~~  179 (529)
                      ++++|+..|+.+++++|.+.+..
T Consensus       163 ~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          163 PMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHHHHHcChHHHHHHHHHhccc
Confidence            99999999999999999986543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=4.9e-21  Score=141.95  Aligned_cols=93  Identities=43%  Similarity=0.669  Sum_probs=83.8

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      +|.||||.||..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.|          
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t----------   70 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT----------   70 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC----------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC----------
Confidence            6999999999999999999999999999999999999999999999999999999999999887766555          


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR  121 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~  121 (529)
                                      ||++|+..|+.+++++|++.|++
T Consensus        71 ----------------~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           71 ----------------PLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             ----------------HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ----------------HHHHHHHcCCHHHHHHHHHcCCC
Confidence                            55566889999999999998763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=1.8e-20  Score=169.02  Aligned_cols=130  Identities=23%  Similarity=0.210  Sum_probs=101.1

Q ss_pred             cHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCchhHHHHHHH
Q psy2356         348 TALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQE---DRVGVAELLLKNNAQVDTPTKMDIATTLL  424 (529)
Q Consensus       348 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~  424 (529)
                      ++|+.|+..++.+.+..+.............+..+..|.||||+|+..   |+.+++++|+++                 
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-----------------  194 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-----------------  194 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-----------------
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-----------------
Confidence            455666666666555544211110000000233467799999999999   788888877775                 


Q ss_pred             HcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchh
Q psy2356         425 EYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETL  496 (529)
Q Consensus       425 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  496 (529)
                        |+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++++..
T Consensus       195 --ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          195 --SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             --CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             --CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence              5677888999999999999999999999999999999999999999999999999999999999998753

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=7.2e-21  Score=173.59  Aligned_cols=145  Identities=16%  Similarity=0.109  Sum_probs=121.8

Q ss_pred             cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHc---CCHHHHHH
Q psy2356         155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHY---GNEGVANI  231 (529)
Q Consensus       155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~v~~  231 (529)
                      .++|+.|+..++.+.++.|++.|.+++....                    ....+..|.||||+|+..   ++.+++++
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~--------------------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~  211 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLP--------------------GPDAQAPEELVLHLAVKVANQASLPLVDF  211 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE--------------------CSSSCSCEECHHHHHHHTCCTTTHHHHHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCC--------------------CcccCCCCccHHHHHHHhcccCcHHHHHH
Confidence            4579999999999999999976665432110                    001467889999999997   89999999


Q ss_pred             HHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccccc
Q psy2356         232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARARE  311 (529)
Q Consensus       232 Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  311 (529)
                      |+++|++++..|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++      .
T Consensus       212 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~  285 (301)
T 2b0o_E          212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------T  285 (301)
T ss_dssp             HHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------T
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------C
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998875      5


Q ss_pred             CCcHHHHHHHcCCh
Q psy2356         312 GHTALSIAQKLGYI  325 (529)
Q Consensus       312 g~t~l~~a~~~~~~  325 (529)
                      |.||||+|+..|+.
T Consensus       286 g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          286 FAFPLHVDYSWVIS  299 (301)
T ss_dssp             TSSCCC--------
T ss_pred             CCChhHHHHhcCCc
Confidence            78999999988864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=2.8e-20  Score=167.71  Aligned_cols=123  Identities=27%  Similarity=0.301  Sum_probs=101.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCc------ccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356         214 FTPLHIASHYGNEGVANILLDKRADVN------FSAKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIPTVRGETPLH  284 (529)
Q Consensus       214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  284 (529)
                      .++|+.|+..|+.+.++.++..|++++      ..+..|.||||+|+..   ++.+++++|+++|++++..|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            357888888888888888888888743      3467788888888888   7888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcc
Q psy2356         285 LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAER  336 (529)
Q Consensus       285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~  336 (529)
                      +|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++...
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            8888888888888888888888888888888888888888888888876554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=5e-21  Score=167.67  Aligned_cols=126  Identities=31%  Similarity=0.340  Sum_probs=116.2

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHH
Q psy2356         210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAAR  288 (529)
Q Consensus       210 ~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~  288 (529)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356         289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAE  335 (529)
Q Consensus       289 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  335 (529)
                      .|+.+++++|+++|++++..+..|.||+++|+..++.++++.++...
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999996544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=8.5e-20  Score=135.24  Aligned_cols=92  Identities=42%  Similarity=0.672  Sum_probs=82.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356         213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT  292 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~  292 (529)
                      |.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            67899999999999999999999999998888899999999999999999999999999998888899999999999999


Q ss_pred             HHHHHHHHCCCC
Q psy2356         293 DIIRILLRNGAQ  304 (529)
Q Consensus       293 ~~~~~Ll~~g~~  304 (529)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999988874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=1.1e-19  Score=169.40  Aligned_cols=144  Identities=27%  Similarity=0.275  Sum_probs=119.4

Q ss_pred             CCCCCHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356         211 KSGFTPLHIASHY-GNEGVANILLDKRADVNFSA--KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA  287 (529)
Q Consensus       211 ~~~~t~l~~A~~~-~~~~~v~~Ll~~g~~~~~~~--~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  287 (529)
                      ..+.|+||.|+.. ++.++++.|++.|++++..+  ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3456899999999 99999999999999999988  88999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccc--cccCCCCCCcHHHHHH
Q psy2356         288 RANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ--LKKRGREGHTALSIAQ  354 (529)
Q Consensus       288 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~a~  354 (529)
                      ..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+......  ....+..+.++++.+.
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999997654322  2233344455555443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.81  E-value=3.7e-20  Score=162.15  Aligned_cols=133  Identities=25%  Similarity=0.311  Sum_probs=105.6

Q ss_pred             CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356         154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL  233 (529)
Q Consensus       154 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  233 (529)
                      +.|+|++|+..|+.+++++|++                          .+.+++.++..|.||||+|+..|+.+++++|+
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~--------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  126 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLD--------------------------NRVGVNGLDKAGSTALYWACHGGHKDIVEMLF  126 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHH--------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHT
T ss_pred             cccccccccccCcHHHHHHHHh--------------------------CCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3466666776777777777774                          45566778889999999999999999999999


Q ss_pred             hC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccC
Q psy2356         234 DK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREG  312 (529)
Q Consensus       234 ~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  312 (529)
                      +. |++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..++.++++.|++.|+.....+..+
T Consensus       127 ~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             TSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             cCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            99 99999999999999999999999999999999999999999999999999999999999999999999877666544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=6.5e-20  Score=142.13  Aligned_cols=109  Identities=39%  Similarity=0.512  Sum_probs=102.7

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356         208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA  287 (529)
Q Consensus       208 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~  287 (529)
                      +++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCcccccccCCcHH
Q psy2356         288 RANQTDIIRILLRNGAQVDARAREGHTAL  316 (529)
Q Consensus       288 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  316 (529)
                      ..++.+++++|+++|++++..+..|.+|-
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999988874

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.79  E-value=1.4e-18  Score=170.59  Aligned_cols=122  Identities=28%  Similarity=0.269  Sum_probs=116.1

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCccc------CCCCCcHHHHHHH---cCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356         214 FTPLHIASHYGNEGVANILLDKRADVNFS------AKSGLTPLHVASF---MGCMNIVIYLLQNDANPDIPTVRGETPLH  284 (529)
Q Consensus       214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~~~~~l~~a~~---~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~  284 (529)
                      .+.|+.|+..|+.+.++.|++.|++++..      +..|.||||+|+.   .|+.+++++|+++|++++..|..|.||||
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh  212 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  212 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            36799999999999999999999999877      7889999999976   89999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356         285 LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAE  335 (529)
Q Consensus       285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  335 (529)
                      +|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++..
T Consensus       213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g  263 (497)
T 3lvq_E          213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  263 (497)
T ss_dssp             HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999997654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=3.5e-19  Score=137.96  Aligned_cols=107  Identities=35%  Similarity=0.458  Sum_probs=97.7

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2356         380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH  459 (529)
Q Consensus       380 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  459 (529)
                      ..+..|.||||+|+..|+.+++++|+++                   |++++.++..|.||||+|+..|+.+++++|+++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-------------------g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~   64 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-------------------GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK   64 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTT-------------------TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            4678899999999999999999999886                   456678888999999999999999999999999


Q ss_pred             CCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhccCCCCc
Q psy2356         460 GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEK  505 (529)
Q Consensus       460 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~  505 (529)
                      |++++..|..|.|||++|+..++.+++++|++++.++...+..++.
T Consensus        65 g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~  110 (115)
T 2l6b_A           65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSH  110 (115)
T ss_dssp             TCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC-
T ss_pred             CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccc
Confidence            9999999999999999999999999999999999999987766654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=1.9e-18  Score=160.91  Aligned_cols=139  Identities=22%  Similarity=0.271  Sum_probs=113.1

Q ss_pred             CHHHHHhhC-CChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCC--CCCCCHHHHHHHcCCHHHHHHH
Q psy2356         156 PALHIAAKK-DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS--KSGFTPLHIASHYGNEGVANIL  232 (529)
Q Consensus       156 ~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~t~l~~A~~~~~~~~v~~L  232 (529)
                      ++|+.|+.. ++.++++.|++.|.                          +++..+  ..|.||||+|+..|+.+++++|
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Ga--------------------------dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~L  254 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGA--------------------------DVNWVNGGQDNATPLIQATAANSLLACEFL  254 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTC--------------------------CTTCCCTTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCC--------------------------CCCccccccCCCCHHHHHHHCCCHHHHHHH
Confidence            589999999 99999999996554                          455555  6889999999999999999999


Q ss_pred             HhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC---Cccccc
Q psy2356         233 LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA---QVDARA  309 (529)
Q Consensus       233 l~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~---~~~~~~  309 (529)
                      +++|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.+.   +....+
T Consensus       255 L~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~  334 (368)
T 3jue_A          255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ  334 (368)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998753   333444


Q ss_pred             ccCCcHHHHHH
Q psy2356         310 REGHTALSIAQ  320 (529)
Q Consensus       310 ~~g~t~l~~a~  320 (529)
                      ..+.|++.++.
T Consensus       335 ~~~~t~l~i~~  345 (368)
T 3jue_A          335 AGDETYLDIFR  345 (368)
T ss_dssp             -----------
T ss_pred             CCCCCHHHHHH
Confidence            55666666554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=7.9e-18  Score=128.78  Aligned_cols=88  Identities=35%  Similarity=0.592  Sum_probs=80.2

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      .+|.|+||.||..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||        
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp--------   93 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA--------   93 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH--------
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH--------
Confidence            589999999999999999999999999999999999999999999999999999999999998877665554        


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHH
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVL  115 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~L  115 (529)
                                        |++|+..|+.+++++|
T Consensus        94 ------------------l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 ------------------FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             ------------------HHHHHHHTCHHHHHHH
T ss_pred             ------------------HHHHHHcCCHHHHHHh
Confidence                              5566888899999876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=6.5e-18  Score=129.23  Aligned_cols=93  Identities=33%  Similarity=0.423  Sum_probs=83.2

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHh
Q psy2356         379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE  458 (529)
Q Consensus       379 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  458 (529)
                      ...+..|.|+||+|+..|+.+++++|+++                   |++++.++..|+||||+|+..|+.+++++|++
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~   78 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-------------------GADVAAKDKNGSTPLHLAARNGHLEVVKLLLE   78 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHc-------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45677899999999999999999988886                   45668888899999999999999999999999


Q ss_pred             CCCCCcchhhcCCCHHHHHHHhCCchHHHHhh
Q psy2356         459 HGADVSHAAKEGHTALSIAQKLGYISVEESLK  490 (529)
Q Consensus       459 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  490 (529)
                      +|++++.+|..|.|||++|+..|+.+++++|.
T Consensus        79 ~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L~  110 (110)
T 2zgd_A           79 AGADVXAQDKFGKTAFDISIDNGNEDLAEILQ  110 (110)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHC
T ss_pred             cCCCccccccCCCcHHHHHHHcCCHHHHHHhC
Confidence            99999999999999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	529
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-58
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-54
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-48
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-31
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-30
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-28
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-25
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-23
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-26
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-24
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-22
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-18
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-26
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-24
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-24
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-20
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-21
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-21
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-18
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-18
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-17
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.004
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	4e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  197 bits (500), Expect = 2e-58
 Identities = 143/487 (29%), Positives = 233/487 (47%), Gaps = 87/487 (17%)

Query: 38  LNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGF 97
           L  LH+AS  GHL +V  LL RGA+ + +  K  T LH+A+                   
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA------------------- 41

Query: 98  TPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKV 153
                  + GH +V   LL+N    + + KD  TPL  A + GH  +V +LLEN+     
Sbjct: 42  -------RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN--- 91

Query: 154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSG 213
                                  +        +++  G+  T   L++ E +    +K G
Sbjct: 92  -------------------PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 132

Query: 214 FTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
           FTPLH+A+ YG   VA +LL++ A  N + K+GLTPLHVA     ++IV  LL    +P 
Sbjct: 133 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 192

Query: 274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA 333
            P   G TPLH+AA+ NQ ++ R LL+ G   +A + +G T L +A + G+  +      
Sbjct: 193 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL-LL 251

Query: 334 AERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD--GEKHKNGLTPLHL 391
           ++++      + G T L +  + G++ V + L        I  G       + G TPLH+
Sbjct: 252 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVL--------IKHGVMVDATTRMGYTPLHV 303

Query: 392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
            +    + + + LL++ A V+  TK+                   G++PLH +A +GH D
Sbjct: 304 ASHYGNIKLVKFLLQHQADVNAKTKL-------------------GYSPLHQAAQQGHTD 344

Query: 452 MSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE--TLIIAKGDGEKHKVV 509
           +  +LL++GA  +  + +G T L+IA++LGYISV + LK VT+  + ++     +KH++ 
Sbjct: 345 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS---DKHRMS 401

Query: 510 APEIMQE 516
            PE + E
Sbjct: 402 FPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  185 bits (470), Expect = 5e-54
 Identities = 126/484 (26%), Positives = 195/484 (40%), Gaps = 89/484 (18%)

Query: 6   TSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDS 65
           T    A+  GHL  +   L+     N +N      LH+A++ GH  V   LL   A V++
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 66  ATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEND----TR 121
             K   T LH A+                          + GH  +V +LLEN+      
Sbjct: 62  KAKDDQTPLHCAA--------------------------RIGHTNMVKLLLENNANPNLA 95

Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVS 177
              G TPL +A ++GH + V  LLE         K     LH+AAK    + A+LLLE  
Sbjct: 96  TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-- 153

Query: 178 CTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
                                    + +P+   K+G TPLH+A H+ N  +  +LL +  
Sbjct: 154 ------------------------RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 189

Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRI 297
             +  A +G TPLH+A+    + +   LLQ   + +  +V+G TPLHLAA+    +++ +
Sbjct: 190 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 249

Query: 298 LLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLG 357
           LL   A  +   + G T L +  + G++ V + L       +    R G+T L +A   G
Sbjct: 250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL-IKHGVMVDATTRMGYTPLHVASHYG 308

Query: 358 YISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKM 417
            I      K V   L        K K G +PLH  AQ+    +  L              
Sbjct: 309 NI------KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL-------------- 348

Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML---LEHGADVSHAAKEGHTAL 474
                LL+ GA PN  S  G TPL ++   G+  ++ +L    +  + V  + K   +  
Sbjct: 349 -----LLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 403

Query: 475 SIAQ 478
               
Sbjct: 404 ETVD 407

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (429), Expect = 4e-48
 Identities = 121/351 (34%), Positives = 184/351 (52%), Gaps = 22/351 (6%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           +  T    AARAGH +     L+N   +N    +    LH A++ GH ++V  LL   AN
Sbjct: 32  KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLG-------DFKQGDGFTPLAVAMQQGHDKVVAVL 115
            + AT  G+T LHIA+    +  V                GFTPL VA + G  +V  +L
Sbjct: 92  PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 151

Query: 116 LEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDT 167
           LE     +  GK+G TPL VA+   +  +V +LL       +        LHIAAK++  
Sbjct: 152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 211

Query: 168 KAAKLLLEVSCTVDPASVLSST-------TGNAATGGYLIKNEHNPDVTSKSGFTPLHIA 220
           + A+ LL+   + +  SV   T        G+A     L+  + N ++ +KSG TPLH+ 
Sbjct: 212 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 271

Query: 221 SHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE 280
           +  G+  VA++L+     V+ + + G TPLHVAS  G + +V +LLQ+ A+ +  T  G 
Sbjct: 272 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY 331

Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           +PLH AA+   TDI+ +LL+NGA  +  + +G T L+IA++LGYISV + L
Sbjct: 332 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 2e-31
 Identities = 76/290 (26%), Positives = 122/290 (42%), Gaps = 41/290 (14%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
           G T    AA+ G +      L+ +   N A  NGL  LH+A    +L +V  LL RG + 
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 191

Query: 64  DSATKKGNTALHI-------ASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLL 116
            S    G T LHI             L      + +   G TPL +A Q+GH ++VA+LL
Sbjct: 192 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 251

Query: 117 EN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTK 168
                 +   K G TPL +  Q+GH  V  VL+++    D   ++    LH+A+   + K
Sbjct: 252 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 311

Query: 169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV 228
             K                          +L++++ + +  +K G++PLH A+  G+  +
Sbjct: 312 LVK--------------------------FLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 345

Query: 229 ANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR 278
             +LL   A  N  +  G TPL +A  +G +++   L           V 
Sbjct: 346 VTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 395

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 2e-30
 Identities = 69/307 (22%), Positives = 108/307 (35%), Gaps = 56/307 (18%)

Query: 33  ANANGLNALHLASKDGHLHVVTELLSRGANVDSATKK-GNTALHIASLG-------EFLV 84
           A     + L  A ++  + +V +LL  GANV+   ++ G T LH A            L 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 85  PVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKV 140
                  ++ +G TP  +A   G  K++ + L      +     GFT    A   G  K 
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 141 VAVLLENDTRGKVRLP--------------ALHIAAKKDDTKAAKLLLEVSCTVDPASVL 186
           +  L +      +R                AL  AA+K   +  K+LL+           
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD----------- 169

Query: 187 SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGN----EGVANILLDKRADVNFS 242
                         +   + +     G   L  A    +    E + ++LLD  ADVN  
Sbjct: 170 --------------EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215

Query: 243 AKSGLTPLHVASFMGCMNIVIYLL-QNDANPDIPTVRGETPLHLAARANQTDIIRILLRN 301
            + G TPL +A     + +V  LL Q     +     G+T L LA       I  +L + 
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

Query: 302 GAQVDAR 308
           GA  D  
Sbjct: 276 GASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 5e-26
 Identities = 66/273 (24%), Positives = 107/273 (39%), Gaps = 26/273 (9%)

Query: 242 SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLAARANQTDIIRILLR 300
           +A      L  A     +++V  LL+  AN +      G TPLH A + ++ DI+ +LLR
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 301 NGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIA----QKL 356
           +GA    R + G T   +A   G + + +   +       +    G TA   A    +  
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVK 119

Query: 357 GYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL-KNNAQVDTPT 415
               + +    V       +      K G T L   A++  V V ++LL +  A V+   
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 416 KM------------------DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
            M                   I   LL++GA  N     G TPL L+  + H  +   LL
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

Query: 458 EH-GADVSHAAKEGHTALSIAQKLGYISVEESL 489
           E    +++    +G TAL +A +L    + E L
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 6e-25
 Identities = 62/318 (19%), Positives = 109/318 (34%), Gaps = 57/318 (17%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            L  A + +D    + LLE    V+                             + G+TP
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVN-------------------------FQEEEGGWTP 42

Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
           LH A     E +  +LL   AD     K+G TP  +A+  G + ++   L   A+ +   
Sbjct: 43  LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102

Query: 277 VRGETPLHLAARANQTDIIRILLRNGA----------QVDARAREGHTALSIAQKLGYIS 326
             G T    AA   +   ++ L + GA            +   + G TAL  A + G++ 
Sbjct: 103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162

Query: 327 VEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNG 385
           V + L     + +      G             S +  ++ +T  L+    D   + + G
Sbjct: 163 VLKILLDEMGADVNACDNMGRN---ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219

Query: 386 LTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSA 445
            TPL L  ++  +G+ + LL+                      + N     G T L L+ 
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQE------------------HIEINDTDSDGKTALLLAV 261

Query: 446 SEGHADMSAMLLEHGADV 463
                 ++ +L + GA  
Sbjct: 262 ELKLKKIAELLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 7e-16
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 27/171 (15%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNNVDINTAN----------ANGLNALHLASKDGHLHVV 53
           G T+F+ AA  G +  +    K   ++N               G  AL  A++ GH+ V+
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164

Query: 54  TELLSR-GANVDSATKKGNTALHIASLGEFLVPVWLG-----------DFKQGDGFTPLA 101
             LL   GA+V++    G  AL  A L      V              + +   G TPL 
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224

Query: 102 VAMQQGHDKVVAVLLEN-----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
           +A+++ H  +V  LLE      +    DG T L +A++    K+  +L + 
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 2e-09
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 3   EGHTSFLRAARAGHLDKIIEHL--KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
            G T  + A    HL  +++ L  + +++IN  +++G  AL LA +     +   L  RG
Sbjct: 218 RGKTPLILAVEKKHLG-LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

Query: 61  ANVD 64
           A+ D
Sbjct: 277 ASTD 280

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  112 bits (281), Expect = 5e-28
 Identities = 37/253 (14%), Positives = 71/253 (28%), Gaps = 24/253 (9%)

Query: 3   EGHTSFLRAARAGHLD--KIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSR 59
           +       AA  G       +  L  ++  +    A    A  LA+++GHLHV+  L   
Sbjct: 89  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

Query: 60  GANVDSATKK--GNTALHIASLGEFLVPVWL----------GDFKQGDGFTPLAVAMQQG 107
                 A  +     A  +A+    L  +               +  + +     A+ +G
Sbjct: 149 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 208

Query: 108 HDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDT 167
           H  V+  LL+                + G   V   +  +  R K    A  ++      
Sbjct: 209 HHNVINFLLDC---PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF 265

Query: 168 KAAKLLLEVSC-TVDPASVLSSTTGNAATGGYLIKNEHNPD-----VTSKSGFTPLHIAS 221
                   +    +    +  +         +L+                     L +A 
Sbjct: 266 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 325

Query: 222 HYGNEGVANILLD 234
             GN+G   +LL 
Sbjct: 326 RLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  104 bits (260), Expect = 3e-25
 Identities = 37/323 (11%), Positives = 78/323 (24%), Gaps = 57/323 (17%)

Query: 1   SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGH---LHVVTELL 57
             +      +     +        +   D +           +A+  G    L  +  LL
Sbjct: 54  GTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLL 113

Query: 58  SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE 117
           +    V     +   A  +A+                          + GH  V+  L E
Sbjct: 114 TSDEIVKVIQAENYQAFRLAA--------------------------ENGHLHVLNRLCE 147

Query: 118 ND------TRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKK 164
                       + +    +A + GH  V+  L E          + +        A  +
Sbjct: 148 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 207

Query: 165 DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYG 224
                   LL+    +  A +     G      ++ ++ +      K       +++  G
Sbjct: 208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLSNPDG 263

Query: 225 NEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV-----RG 279
              +                  L  L   +    ++ + +LL       +          
Sbjct: 264 VFDLVT------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 317

Query: 280 ETPLHLAARANQTDIIRILLRNG 302
              L LA R        +LL   
Sbjct: 318 NELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 98.4 bits (244), Expect = 3e-23
 Identities = 35/268 (13%), Positives = 73/268 (27%), Gaps = 43/268 (16%)

Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS--GLTPLHVASF 255
            L+ ++    V     +    +A+  G+  V N L +       +           +A+ 
Sbjct: 111 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 170

Query: 256 MGCMNIVIYLLQNDANPDIPTVR---GETPLHLAARANQTDIIRILLRNGAQVDARAREG 312
            G ++++  L +         ++          A      ++I  LL     +       
Sbjct: 171 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA------ 224

Query: 313 HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372
             A     + G   V   +     ++   R +E H A  ++   G   +           
Sbjct: 225 -YAEIHEFEYGEKYVNPFI-----ARHVNRLKEMHDAFKLSNPDGVFDL----------- 267

Query: 373 IIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNA 432
            + K +  +    L  L     E  +     LL                  ++  A    
Sbjct: 268 -VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG--------------IKALAPTAT 312

Query: 433 ESVAGFTPLHLSASEGHADMSAMLLEHG 460
                   L L+   G+    A+LL   
Sbjct: 313 IPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 93.0 bits (230), Expect = 3e-21
 Identities = 46/314 (14%), Positives = 80/314 (25%), Gaps = 40/314 (12%)

Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL-----------LDKRADVNFSAKSGL 247
           +  NE +    S      + +      E V  +L               +D +       
Sbjct: 32  ISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSE 91

Query: 248 TPLHVASFMGCMNI---VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
               VA+  GC +    +  LL +D    +          LAA      ++  L      
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 305 VDAR--AREGHTALSIAQKLGYISVEESL--GAAERSQLKKRGREGHTALSIAQKLGYIS 360
                   E + A  +A + G++ V   L   A   +    +    +     A   G+ +
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 361 VEESL----KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK 416
           V   L      +    I     GEK    + P           + +    +N        
Sbjct: 212 VINFLLDCPVMLAYAEIHEFEYGEK---YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 268

Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA-----AKEGH 471
                    Y              L     E   D    LL      + A       + +
Sbjct: 269 TKSECLQGFYML----------RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 318

Query: 472 TALSIAQKLGYISV 485
             L +A +LG    
Sbjct: 319 ELLRLALRLGNQGA 332

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.8 bits (123), Expect = 9e-08
 Identities = 17/112 (15%), Positives = 29/112 (25%), Gaps = 18/112 (16%)

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
           +K         + A                       +D    LL             + 
Sbjct: 85  KKGIKSEVICFVAAITGCSSA----------------LDTLCLLLTSDEIVKVIQAENYQ 128

Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKE--GHTALSIAQKLGYISVEESL 489
              L+A  GH  +   L E       A  +   + A  +A + G++ V   L
Sbjct: 129 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  107 bits (266), Expect = 2e-26
 Identities = 53/264 (20%), Positives = 83/264 (31%), Gaps = 21/264 (7%)

Query: 36  NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
           +       A   G    V  LL RGA+++ A   G TALH A + + +  V        +
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 96  GFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRL 155
              P        H       L+           +     +G   +     E         
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 156 PALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFT 215
                   +   K  + ++                       +L     N    +KSG T
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQ-----------------WLNSGHINDVRHAKSGGT 201

Query: 216 PLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIP 275
            LH+A+  G   V  +L+  R DVN     G TPLH A+  G       L++N  + +  
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261

Query: 276 TVRGETPLHLAARANQTDIIRILL 299
              G+T   +A      DI+  L 
Sbjct: 262 NKVGQTAFDVADE----DILGYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 99.8 bits (247), Expect = 5e-24
 Identities = 49/236 (20%), Positives = 79/236 (33%), Gaps = 9/236 (3%)

Query: 95  DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTR 150
           D       A   G  + V  LLE     +    DG T L  A    +  +V  L+EN   
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 151 GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKN-----EHN 205
                    I      +     + E   +        ++ G+        +      ++ 
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
            +                        L     +    AKSG T LHVA+  G   ++  L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
           +Q   + +I    G TPLH AA   + +  RIL+ N   ++A  + G TA  +A +
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 96.3 bits (238), Expect = 1e-22
 Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 32/265 (12%)

Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
                A   G+      LL++ AD+N++   GLT LH A     +++V +L++N AN + 
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101

Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
           P   G  PLH AA     DI   L+  GA V A   EG T          I+ EE++   
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP-------LDIAEEEAMEEL 154

Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQ 394
            ++++ ++G +   A    +++      + L            D    K+G T LH+ A 
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQWLNS------GHINDVRHAKSGGTALHVAAA 208

Query: 395 EDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSA 454
           +                      ++   L++     N +   G+TPLH +A  G  +   
Sbjct: 209 KGYT-------------------EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249

Query: 455 MLLEHGADVSHAAKEGHTALSIAQK 479
           +L+E+  D+    K G TA  +A +
Sbjct: 250 ILVENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 84.4 bits (207), Expect = 1e-18
 Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 21/272 (7%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           +    FL A  +G  ++++  L+   DIN AN +GL ALH A  D ++ +V  L+  GAN
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 63  VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRG 122
           ++    +G   LH          + + ++    G    AV   +G   +     E     
Sbjct: 99  INQPDNEGWIPLHA---AASCGYLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEEAMEEL 154

Query: 123 KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDP 182
                       +   K    ++  D R  +    ++          A            
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH---------- 204

Query: 183 ASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS 242
              +++  G       LI+  ++ ++    G+TPLH A+H+G E    IL++   D+   
Sbjct: 205 ---VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261

Query: 243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
            K G T   VA      +I+ YL +     ++
Sbjct: 262 NKVGQTAFDVA----DEDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 73.2 bits (178), Expect = 6e-15
 Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 1/212 (0%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
                  A  +  T+ +  LL  GA ++    +G TAL  A     + + + L     + 
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 339 LKKRGREGHTALSIAQKLGYISVEE-SLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR 397
            +          + A        E    +G     + ++GD          +    Q + 
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159

Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
                 +     + +     D    L          + +G T LH++A++G+ ++  +L+
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           +   DV+    +G T L  A   G       L
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 52/246 (21%), Positives = 87/246 (35%), Gaps = 36/246 (14%)

Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
           G+      L++   + +  +  G T LH A    N  +   L++  A++N     G  PL
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110

Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRI------------- 297
           H A+  G ++I  YL+   A+       G+TPL +A      ++++              
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170

Query: 298 --------------LLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRG 343
                         L          A+ G TAL +A   GY  V + L    R  +  + 
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKD 229

Query: 344 REGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAE 402
            +G T L  A   G        +     L+    D    +K G T   +  ++    + E
Sbjct: 230 YDGWTPLHAAAHWGK-------EEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282

Query: 403 LLLKNN 408
           L  K N
Sbjct: 283 LQKKQN 288

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 8e-26
 Identities = 49/256 (19%), Positives = 86/256 (33%), Gaps = 14/256 (5%)

Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYLL 266
           ++ G T LH+A  + +E   + LL   A    ++     G T LH+A+ +G  + V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYIS 326
              A   +    G T LHLA R        +LL+        A + +   S         
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 327 VEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGL 386
              ++ +    + ++  R+    L +  +           G T   +       +    L
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYD--------GHTPLHVAVIHKDAEMVRLL 177

Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSAS 446
                   +         L    +        +   LL+ GA P A    G TPL  +  
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQ---AASVLELLLKAGADPTARMYGGRTPLGSALL 234

Query: 447 EGHADMSAMLLEHGAD 462
             +  ++ +L  HGA 
Sbjct: 235 RPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (250), Expect = 1e-24
 Identities = 57/275 (20%), Positives = 83/275 (30%), Gaps = 34/275 (12%)

Query: 36  NGLNALHLASKDGHLHVVTELLSRGAN---VDSATKKGNTALHIASLGEFLVPVWLGDFK 92
           +G  ALHLA    H   +  LL   A    +D     G TALH+A++      V      
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 93  QGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGK 152
                          H                      +A +        VLL+      
Sbjct: 68  GAGVLVAERGGHTALH----------------------LACRVRAHTCACVLLQPRPSHP 105

Query: 153 VRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKS 212
                 ++   +D T              PA+V S                   +  +  
Sbjct: 106 RDASDTYLTQSQDCTPDTSHA--------PAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157

Query: 213 GFTPLHIAS-HYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           G TPLH+A  H   E V  +              G TPLH+A      +++  LL+  A+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
           P      G TPL  A       + R+L  +GA   
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 16/111 (14%)

Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF 438
           G   ++G T LHL          + LL  +A  +                  + ++  G 
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY----------------LDLQNDLGQ 46

Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           T LHL+A  G A     L   GA V  A + GHTAL +A ++   +    L
Sbjct: 47  TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 12/60 (20%), Positives = 16/60 (26%)

Query: 5   HTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVD 64
            T    A  A     +   LK   D       G   L  A    +  +   L + GA   
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  101 bits (251), Expect = 1e-24
 Identities = 47/300 (15%), Positives = 86/300 (28%), Gaps = 41/300 (13%)

Query: 11  AARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELL--------SRGA 61
              A     I E + + +V+I     +    LH  + +       +L+        + GA
Sbjct: 7   HTEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA 65

Query: 62  NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR 121
           +V++     NT L +A L      V        D            H             
Sbjct: 66  DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA----------- 114

Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVD 181
                             ++  +L +                     A     +   +  
Sbjct: 115 -----------AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 163

Query: 182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEG-VANILLDKRADVN 240
                                    D     G T LH A+   N   V  ++ +K ++ +
Sbjct: 164 --------LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 215

Query: 241 FSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
              + G TP+ +A+  G + +V+YL+Q  A+ +       T   LA   N  +I+ I  R
Sbjct: 216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 88.3 bits (217), Expect = 3e-20
 Identities = 47/291 (16%), Positives = 98/291 (33%), Gaps = 35/291 (12%)

Query: 215 TPLHIA-SHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND---- 269
           +P+ +     G+  +   +  +  ++    +   T LH  +          L+ ++    
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 270 ----ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
               A+ +       TPL LA  A +  ++  L++ GA      +   +AL  A      
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 326 SVEESLGAAERSQLKKRGREGHT-------ALSIAQKLGYISVEESLKGVTETLIIAKGD 378
            +   +  + + +      + +        A +  +     +     KG       A   
Sbjct: 121 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 180

Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF 438
             +   G T LH  AQ   +                    +   + E G+  + +   G 
Sbjct: 181 DSEKYKGRTALHYAAQVSNM------------------PIVKYLVGEKGSNKDKQDEDGK 222

Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
           TP+ L+A EG  ++   L++ GA V       HTA  +AQ   + ++ +  
Sbjct: 223 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.2 bits (196), Expect = 2e-17
 Identities = 42/272 (15%), Positives = 86/272 (31%), Gaps = 38/272 (13%)

Query: 98  TPLAVAMQ-QGHDKVVAVLLE---NDTRGKDGFTPLAVAMQQGHDKVVAVLLEN------ 147
           +P+ +  +  G   +   +     N    +   T L         +    L+ +      
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 148 ---------DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPAS-------------- 184
                    D      L    +A ++                + +               
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 121

Query: 185 ----VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN 240
               +L+ST                  + + +       ++    E  A +  D  A  +
Sbjct: 122 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 181

Query: 241 FSAKSGLTPLHVASFMGCMNIVI-YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
                G T LH A+ +  M IV   + +  +N D     G+TP+ LAA+  + +++  L+
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 241

Query: 300 RNGAQVDARAREGHTALSIAQKLGYISVEESL 331
           + GA V+A     HTA  +AQ   + ++ +  
Sbjct: 242 QQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.1 bits (170), Expect = 6e-14
 Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 44/299 (14%)

Query: 127 TPLAVAMQ-QGHDKVVAVLLE---NDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDP 182
           +P+ +  +  G   +   +     N    +     LH  A     + ++ L+        
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK--- 58

Query: 183 ASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS 242
                            I    + +       TPL +A       +   L+   AD    
Sbjct: 59  ---------------ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 103

Query: 243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA------------- 289
            KS  + LH A+      +++Y+L +              +                   
Sbjct: 104 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 163

Query: 290 -NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHT 348
                  ++     A+ D+   +G TAL  A ++  + + + L   + S   K+  +G T
Sbjct: 164 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 223

Query: 349 ALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLK 406
            + +A + G I V          LI              T   L    +   + ++  +
Sbjct: 224 PIMLAAQEGRIEV-------VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.2 bits (139), Expect = 5e-10
 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 3   EGHTSFLRAARAGHLDKIIEH-LKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
           +G T+   AA+  ++  +     +   + +  + +G   + LA+++G + VV  L+ +GA
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 245

Query: 62  NVDSATKKGNTALHIAS 78
           +V++     +TA  +A 
Sbjct: 246 SVEAVDATDHTARQLAQ 262

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.8 bits (138), Expect = 6e-10
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 8   FLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSAT 67
           ++  +     D           +     N       ++K              A  DS  
Sbjct: 125 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 184

Query: 68  KKGNTALHIASLGEFLVPVWLGDFKQG--------DGFTPLAVAMQQGHDKVVAVLLEN- 118
            KG TALH A+    +  V     ++G        DG TP+ +A Q+G  +VV  L++  
Sbjct: 185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 119 ---DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
              +       T   +A    H  +V +   
Sbjct: 245 ASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSR 59
           +G T  + AA+ G ++ ++  ++    +   +A    A  LA  + H ++V ++  R
Sbjct: 220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV-DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 34/272 (12%), Positives = 74/272 (27%), Gaps = 64/272 (23%)

Query: 3   EGHTSFLRAARAGHLD--------KIIEHLKNNVDINTANANGLNALHLASKDGHLHVVT 54
              T     A     +        +  E +    D+N  + +    L LA       +V 
Sbjct: 32  HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 91

Query: 55  ELLSRGANVDSAT-----------KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVA 103
            L+  GA+                   +  + +  L    +   + +  +      + VA
Sbjct: 92  YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 151

Query: 104 MQQGHDKVVAVLL--------------ENDTRGKDGFTPLAVAMQQGHDKVVAVLLEND- 148
             +G D+V +  L                D+    G T L  A Q  +  +V  L+    
Sbjct: 152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 211

Query: 149 ----TRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEH 204
                + +     + +AA++   +    L++                             
Sbjct: 212 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-------------------------- 245

Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
           + +    +  T   +A    +  + +I    R
Sbjct: 246 SVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 44/247 (17%)

Query: 280 ETPLHLAARA-NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
           E+P+ L   A     I   + R    +    R   T L            E L   E  +
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 339 LKKRG-------REGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL 391
               G        + +T L          +    + V   +         +K+  + LH 
Sbjct: 60  CIAAGADVNAMDCDENTPLM------LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 113

Query: 392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGA----------------------- 428
            A     G+   +L +        ++D                                 
Sbjct: 114 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD 173

Query: 429 -----KPNAESVAGFTPLHLSASEGHADM-SAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
                + ++E   G T LH +A   +  +   ++ E G++     ++G T + +A + G 
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 483 ISVEESL 489
           I V   L
Sbjct: 234 IEVVMYL 240

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 439 TPLHL-SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
           +P+ L + + G   ++  +     ++    +   T L            E L        
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 498 IAKG 501
           IA G
Sbjct: 61  IAAG 64

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 2e-21
 Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 12/205 (5%)

Query: 129 LAVAMQQGHDKVVAVLLEND-----TRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPA 183
           +      G  + +   +  D        +    ALH A     T+  + LL++   V+  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 184 SVLSSTT-------GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
                +        G       L+      +  +++G TPLH A+      +A +LL+  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
           A+ +       T +H A+  G + ++  LL   A+ +I    G TPLHLA    + +  +
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 186

Query: 297 ILLRNGAQVDARAREGHTALSIAQK 321
           +L+  GA +    +E  T L +A+ 
Sbjct: 187 LLVSQGASIYIENKEEKTPLQVAKG 211

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 5e-21
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 43/243 (17%)

Query: 41  LHLASKDGHLHVVTELL-SRGANVDSATKKGNTALHIASLG-------EFLVPVWLGDFK 92
           +   +  G L  + E + +  +      +   TALH A            L      + K
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 93  QGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN- 147
              G++PL +A   G D++V  LL      +   ++G TPL  A  +   ++  +LLE  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 148 ---DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEH 204
              D +      A+H AA K                          GN      L+  + 
Sbjct: 127 ANPDAKDHYEATAMHRAAAK--------------------------GNLKMIHILLYYKA 160

Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
           + ++    G TPLH+A        A +L+ + A +    K   TPL VA   G   I+  
Sbjct: 161 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKR 219

Query: 265 LLQ 267
           +++
Sbjct: 220 MVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 8e-18
 Identities = 46/223 (20%), Positives = 83/223 (37%), Gaps = 21/223 (9%)

Query: 283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKR 342
            +LA      ++   +L + +      ++  TAL  A   G+  +           L+  
Sbjct: 8   CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIV-------EFLLQLG 60

Query: 343 GREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAE 402
                   +    L   +     + V   L         ++NG TPLH  A ++R  +A 
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 403 LLLKNNAQVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
           +LL+  A  D                  + +   LL Y A  N +   G TPLHL+  E 
Sbjct: 121 MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 180

Query: 449 HADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG 491
             + + +L+  GA +    KE  T L +A+    + ++  ++G
Sbjct: 181 RVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVEG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 1e-17
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 12/134 (8%)

Query: 24  LKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL 83
           L     +N  N NG   LH A+      +   LL  GAN D+      TA+H A+    L
Sbjct: 90  LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 149

Query: 84  VPVWLGDF-------KQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVA 132
             + +  +       +  +G TPL +A  +   +   +L+          K+  TPL VA
Sbjct: 150 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 209

Query: 133 MQQGHDKVVAVLLE 146
            + G   ++  ++E
Sbjct: 210 -KGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 4e-12
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 15/157 (9%)

Query: 365 LKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDT---------- 413
           L+ + E+++  K       ++  T LH         + E LL+    V+           
Sbjct: 16  LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 75

Query: 414 ----PTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKE 469
                 + +I   LL  GA+ NA +  G TPLH +AS+   +++ MLLE GA+       
Sbjct: 76  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 135

Query: 470 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKH 506
             TA+  A   G + +   L     +  I   +G   
Sbjct: 136 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTP 172

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 7e-08
 Identities = 24/86 (27%), Positives = 37/86 (43%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
              T+  RAA  G+L  I   L      N  +  G   LHLA  +  +     L+S+GA+
Sbjct: 135 YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS 194

Query: 63  VDSATKKGNTALHIASLGEFLVPVWL 88
           +    K+  T L +A  G  L+   +
Sbjct: 195 IYIENKEEKTPLQVAKGGLGLILKRM 220

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (215), Expect = 1e-19
 Identities = 41/271 (15%), Positives = 82/271 (30%), Gaps = 27/271 (9%)

Query: 218 HIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT- 276
            +      E   ++  D     +    S     HV+       +         N +IP  
Sbjct: 45  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 104

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA-------QKLGYISVEE 329
             G TPLH        ++++ L+++G+        G + L  A           + ++ +
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHK---NGL 386
            L      +        H  +  +   G  +  +    +    I+ K +           
Sbjct: 165 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSAS 446
           +  +    E +  + E L                          NA+   G T L+++A 
Sbjct: 225 SKPNDKNGERKDSILENLD----------------LKWIIANMLNAQDSNGDTCLNIAAR 268

Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
            G+  +   LL++GAD   A K G   +   
Sbjct: 269 LGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.4 bits (202), Expect = 6e-18
 Identities = 39/292 (13%), Positives = 77/292 (26%), Gaps = 65/292 (22%)

Query: 1   SGEGHTSFLRAARAGHLDKIIEHLKN-NVDINTA-NANGLNALHLASKDGHLHVVTELLS 58
            G  +      +    L ++ +   N  +++N   + +G   LH  +   +L +V  L+ 
Sbjct: 69  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

Query: 59  RGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
            G+N       G + L  A                                 +  +    
Sbjct: 129 HGSNRLYGDNMGESCLVKAVKSVNNYDSG------------------TFEALLDYLYPCL 170

Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSC 178
                   T L   +                           AAK         +++   
Sbjct: 171 ILEDSMNRTILHHIIITSGMT-----------------GCSAAAKYYLDILMGWIVK--- 210

Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR-- 236
                                 K        +    +  +  +    + +   L  K   
Sbjct: 211 ----------------------KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 237 -ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA 287
              +N    +G T L++A+ +G ++IV  LL   A+P I    G  P+   A
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.2 bits (186), Expect = 6e-16
 Identities = 24/190 (12%), Positives = 47/190 (24%), Gaps = 27/190 (14%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGY-----------LIKNEHN 205
            LH      + +  K L++          +  +    A               L      
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 206 PDVTSKSGFTPLHIASHYGN-------------EGVANILLDKRADVNFSAKSGLTPLHV 252
             +      T LH                      +  I+  +   +        +  + 
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 253 ASFMGCMNIVIYLLQN---DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
            +     +I+  L          +     G+T L++AAR     I+  LL  GA      
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 289

Query: 310 REGHTALSIA 319
           + G   +   
Sbjct: 290 KSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.2 bits (186), Expect = 7e-16
 Identities = 41/251 (16%), Positives = 87/251 (34%), Gaps = 33/251 (13%)

Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSA-KSGLTPLHVASFMGCMNIVIYLLQ 267
              S     H++     + V +   + + ++N    + G TPLH  + +  + +V +L++
Sbjct: 69  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

Query: 268 NDANPDIPTVRGETPLHLAARANQ-------TDIIRILLRNGAQVDARAREG--HTALSI 318
           + +N       GE+ L  A ++           ++  L       D+  R    H  ++ 
Sbjct: 129 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 188

Query: 319 AQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD 378
                  + +  L       +KK+ R   +  +  +        E    + E L +    
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 379 GE----KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES 434
                 +  NG T L++ A+   + + + LL                   +YGA P   +
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALL-------------------DYGADPFIAN 289

Query: 435 VAGFTPLHLSA 445
            +G  P+   A
Sbjct: 290 KSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 20/174 (11%)

Query: 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHK 383
           ++S    +  A  S +     +     +  Q+L +  ++E    +      +  + E   
Sbjct: 14  FLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNND--SSNRNSEGGS 71

Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
           +     H+        V +        ++ P                      G TPLH 
Sbjct: 72  SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEH------------------GNTPLHW 113

Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
             S  + ++   L++HG++  +    G + L  A K        + + + + L 
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 82.1 bits (201), Expect = 1e-18
 Identities = 44/206 (21%), Positives = 70/206 (33%), Gaps = 17/206 (8%)

Query: 110 KVVAVLLE-----NDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKK 164
           +V++ LL      N T  K G T L +A +         LL+       +          
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 165 DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGY------------LIKNEHNPDVTSKS 212
                A  + ++       ++ +                       LI  + + +    S
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
           G T LH A+   N    NILL   A+ +       TPL +A+  G       LL N AN 
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 273 DIPTVRGETPLHLAARANQTDIIRIL 298
           +I       P  +A+     DI+R+L
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 66.4 bits (160), Expect = 4e-13
 Identities = 49/213 (23%), Positives = 78/213 (36%), Gaps = 22/213 (10%)

Query: 261 IVIYLLQNDANPDIPT-VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
           ++  LL   A  +      GET LHLAAR  + D  + LL  GA  +++   G T L  A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG 379
                + V + L     + L  R  +G T L +A +L    + E L      +       
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI------N 117

Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKM--------------DIATTLLE 425
               +G T LH  A  +      +LL ++A  D                   + +  LL+
Sbjct: 118 AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD 177

Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLE 458
             A           P  +++   H D+   LL+
Sbjct: 178 NFANREITDHMDRLPRDVASERLHHDI-VRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.1 bits (136), Expect = 6e-10
 Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 11/210 (5%)

Query: 198 YLIKNEHNPDVTS-KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFM 256
            L+      + T  K+G T LH+A+ +     A  LLD  AD N    +G TPLH A   
Sbjct: 7   DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA 66

Query: 257 GCMNIV-IYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA 315
             M +  I L     N +     G TPL LAAR     ++  L+   A ++A    G TA
Sbjct: 67  DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTA 126

Query: 316 LSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIA 375
           L  A  +        L     ++   +  +  T L +A + G           ++ L+  
Sbjct: 127 LHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEA-------SKALLDN 178

Query: 376 KGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
             +          P  + ++     +  LL
Sbjct: 179 FANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.3 bits (134), Expect = 8e-10
 Identities = 40/232 (17%), Positives = 73/232 (31%), Gaps = 44/232 (18%)

Query: 19  KIIEHL-KNNVDIN-TANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHI 76
           ++I  L     ++N T +  G  +LHLA++         LL  GA+ +S    G T LH 
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 77  ASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN------------DTRGKD 124
           A   + +    +    +                    + +E             +     
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 125 GFTPLAVAMQQGHDKVVAV----LLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTV 180
           G T L  A    + + V +        D +       L +AA++   +A+K LL+     
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD----- 177

Query: 181 DPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL 232
                                N  N ++T      P  +AS   +  +  +L
Sbjct: 178 ---------------------NFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
            G T+   AA   + + +   L ++ + +  +      L LA+++G       LL   AN
Sbjct: 122 SGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN 181

Query: 63  VDSATKKGNTALHIAS 78
            +           +AS
Sbjct: 182 REITDHMDRLPRDVAS 197

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 5   HTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELL 57
             + L  A      +  + L  N  +    +        +AS+  H  +V  LL
Sbjct: 156 DETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIV-RLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 419 IATTLLEYGAKPNAES-VAGFTPLHLSASEGHADMSAMLLEH 459
           + + LL  GA+ NA     G T LHL+A    AD +  LL+ 
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA 45

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 2e-18
 Identities = 40/231 (17%), Positives = 70/231 (30%), Gaps = 10/231 (4%)

Query: 36  NGLNALHLASKDGHLHVVTELLS----RGANVDSATKKGNTALHIASLGEFLVPVWLGDF 91
           +G   LH+A   G+L  V  L++     G  +D       T LH+A +      V L   
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 92  KQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
                           H               D   P  + ++  +   +  L       
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
                 L +    D             +     + +    + +    L+++  N +    
Sbjct: 122 CQETVQLLLERGADIDA------VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 175

Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIV 262
           SG + LH AS  G   +   L+   AD +       TPL VA     ++I+
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (197), Expect = 8e-18
 Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 27/242 (11%)

Query: 95  DGFTPLAVAMQQGHDKVVAVLLEN--------DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
           DG TPL +A+ QG+   V  L+          D       TPL +A+      VV +L+ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 147 NDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNP 206
                                               A    S T   A          + 
Sbjct: 62  AGASPMALDRHGQ------------------TAAHLACEHRSPTCLRALLDSAAPGTLDL 103

Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK-SGLTPLHVASFMGCMNIVIYL 265
           +  +  G T LH+A +   +    +LL++ AD++     SG +PL  A     +++V  L
Sbjct: 104 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 163

Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
           LQ+ AN +     G + LH A+      ++R L+R+GA    +     T L +A+    I
Sbjct: 164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 223

Query: 326 SV 327
            +
Sbjct: 224 DI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 1e-17
 Identities = 50/232 (21%), Positives = 84/232 (36%), Gaps = 25/232 (10%)

Query: 279 GETPLHLAARANQTDIIRILL----RNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
           G+TPLH+A        +  L+    + G ++D       T L +A      SV   L  A
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQ 394
             S +         A    +   + S       +            ++ +GLT LH+   
Sbjct: 63  GASPMALDRHGQTAAHLACE---HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 119

Query: 395 EDRVGVAELLLKNNAQVDTPTKMD---------------IATTLLEYGAKPNAESVAGFT 439
            +     +LLL+  A +D                     +   LL++GA  NA+  +G +
Sbjct: 120 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 179

Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG 491
            LH ++  G   +   L+  GAD S       T L +A+    I +   L+G
Sbjct: 180 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI---LRG 228

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 46/223 (20%), Positives = 77/223 (34%), Gaps = 35/223 (15%)

Query: 213 GFTPLHIASHYGNEGVANILLD----KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
           G TPLHIA   GN    + L++       +++       TPLH+A      ++V  L+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR----EGHTALSIAQKLGY 324
            A+P      G+T  HLA        +R LL + A           +G TAL +A     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 325 ISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL------------------- 365
               + L            + G + L  A +   +S+ + L                   
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 182

Query: 366 -------KGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGV 400
                    +  TL+ +  D   K+ +  TPL +      + +
Sbjct: 183 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 19/74 (25%), Positives = 33/74 (44%)

Query: 5   HTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVD 64
            +  + A     L  +   L++  ++N    +G +ALH AS  G L +V  L+  GA+  
Sbjct: 145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 65  SATKKGNTALHIAS 78
                 +T L +A 
Sbjct: 205 LKNCHNDTPLMVAR 218

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 8/51 (15%), Positives = 21/51 (41%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVV 53
            G ++   A+  G L  +   +++  D +  N +    L +A     + ++
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
           +G TPLH+   +  +     L+                   + G + +  +    TPLHL
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVN---------------LFQQGGRELDIYNNLRQTPLHL 46

Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYI 483
           +       +  +L+  GA      + G TA  +A +    
Sbjct: 47  AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 86

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.9 bits (190), Expect = 6e-17
 Identities = 48/271 (17%), Positives = 82/271 (30%), Gaps = 47/271 (17%)

Query: 40  ALHLASKDGHLHVVTELL-SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFT 98
            LH A  +     V ELL S+ + +    +                          DG  
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQ--------------------------DGRI 36

Query: 99  PLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPAL 158
           PL  ++     ++ + LL           P        H       LE       R    
Sbjct: 37  PLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP 96

Query: 159 HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLH 218
            +    +       L       + +              +LI+N  +  +  K    PLH
Sbjct: 97  DLNKITNQGVTCLHLAVGKKWFEVSQ-------------FLIENGASVRIKDKFNQIPLH 143

Query: 219 IASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND-ANPDIPT 276
            A+  G+  +  +L    ++ VN+  K G TPL  A   G  +  + L++   A  D+  
Sbjct: 144 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 203

Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDA 307
            +G     +A       + +  L N    DA
Sbjct: 204 NKGAKAEDVAL---NEQVKKFFLNNVV--DA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.9 bits (177), Expect = 3e-15
 Identities = 40/253 (15%), Positives = 76/253 (30%), Gaps = 31/253 (12%)

Query: 215 TPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN--DAN 271
            PLH A           LL  + + +    + G  PLH +       I  +LL    + N
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEES- 330
            D             A +     +   L +        +  +  ++           E  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 331 -LGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPL 389
                  + ++ + +     L  A  +G + + E L G+ ++ +       + K G TPL
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN-----WQDKQGWTPL 176

Query: 390 HLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
                E     A LL++                   YGA+ +     G     ++ +E  
Sbjct: 177 FHALAEGHGDAAVLLVEK------------------YGAEYDLVDNKGAKAEDVALNE-- 216

Query: 450 ADMSAMLLEHGAD 462
             +    L +  D
Sbjct: 217 -QVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 42/260 (16%), Positives = 79/260 (30%), Gaps = 42/260 (16%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            LH A  +++    + LL                                    + G  P
Sbjct: 3   PLHQACMENEFFKVQELLH-------------------------SKPSLLLQKDQDGRIP 37

Query: 217 LHIASHYGNEGVANILLDK-----RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
           LH +  +    + + LL K       D    +      +  +     +   +Y      +
Sbjct: 38  LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 97

Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
            +  T +G T LHLA      ++ + L+ NGA V  + +     L  A  +G + + E L
Sbjct: 98  LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 157

Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD--GEKHKNGLTPL 389
               +S +  + ++G T         + ++ E        L+   G         G    
Sbjct: 158 CGLGKSAVNWQDKQGWTP-------LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAE 210

Query: 390 HLCAQEDRVGVAELLLKNNA 409
            +   E    V +  L N  
Sbjct: 211 DVALNEQ---VKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 4e-11
 Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 21/217 (9%)

Query: 281 TPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
            PLH A   N+   ++ LL    + +  + ++G   L  +       +        + + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF--LLSKMEN 59

Query: 340 KKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG 399
                    +      +        +        +     +    G+T LHL   +    
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNA----------------ESVAGFTPLHL 443
           V++ L++N A V    K +    L    +  +                 +   G+TPL  
Sbjct: 120 VSQFLIENGASVRIKDKFN-QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 444 SASEGHADMSAMLLE-HGADVSHAAKEGHTALSIAQK 479
           + +EGH D + +L+E +GA+      +G  A  +A  
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 7e-11
 Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 19/214 (8%)

Query: 127 TPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKKDDTKAAKLLLE------ 175
            PL  A  +     V  LL         + +     LH +      +    LL       
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 176 ------VSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA 229
                  S         S          Y    + + +  +  G T LH+A       V+
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 230 NILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP-DIPTVRGETPLHLAAR 288
             L++  A V    K    PLH A+ +G + ++  L     +  +    +G TPL  A  
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 289 ANQTDIIRILL-RNGAQVDARAREGHTALSIAQK 321
               D   +L+ + GA+ D    +G  A  +A  
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 42/251 (16%), Positives = 70/251 (27%), Gaps = 50/251 (19%)

Query: 10  RAARAGHLDKIIEHLKNN-VDINTANANGLNALHLASKDGHLHVVTELLSRG-------- 60
           +A       K+ E L +    +   + +G   LH +       + + LLS+         
Sbjct: 6   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY 65

Query: 61  ----ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLL 116
                            L +             +     G T L +A+ +   +V   L+
Sbjct: 66  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 125

Query: 117 END----TRGKDGFTPLAVAMQQGHDKVVAVLLENDT-----RGKVRLPALHIAAKKDDT 167
           EN      + K    PL  A   G  K++ +L          + K     L  A  +   
Sbjct: 126 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 185

Query: 168 KAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEG 227
            AA LL+E                         K     D+    G     +A +   E 
Sbjct: 186 DAAVLLVE-------------------------KYGAEYDLVDNKGAKAEDVALN---EQ 217

Query: 228 VANILLDKRAD 238
           V    L+   D
Sbjct: 218 VKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 1/45 (2%)

Query: 439 TPLHLSASEGHADMSAMLLE-HGADVSHAAKEGHTALSIAQKLGY 482
            PLH +  E        LL    + +    ++G   L  +     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 4   GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
           G T    A   GH D  +  + K   + +  +  G  A  +A    +  V    L+   +
Sbjct: 172 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (171), Expect = 2e-14
 Identities = 41/210 (19%), Positives = 73/210 (34%), Gaps = 20/210 (9%)

Query: 279 GETPLHLAARANQTD----IIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
           G++ LHLA    +      +IR +  + A ++ +     T L +A       + E+L  A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQ 394
                 +  R         ++    SV    +  T    +       + NG T LHL + 
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP-HLHSILKATNYNGHTCLHLASI 120

Query: 395 EDRVGVAELLLKNNAQVDTPTKMDIATTL---------------LEYGAKPNAESVAGFT 439
              +G+ ELL+   A V+     +  T L               L+ GA  N  +  G++
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKE 469
           P  L+       +   L +   +      E
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 4e-14
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 25/219 (11%)

Query: 95  DGFTPLAVAMQQGHDKVVAVLLEN--------DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
           DG + L +A+      +   ++          + +     TPL +A+     ++   LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 147 NDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNP 206
                ++R    +        +     + V                              
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT----------------PHLHSIL 104

Query: 207 DVTSKSGFTPLHIASHYGN-EGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
             T+ +G T LH+AS +G    V  ++            +G T LH+A  +   ++V  L
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 164

Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
           L+  A+ +  T +G +P  L      T I + L +   +
Sbjct: 165 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 25/207 (12%), Positives = 53/207 (25%), Gaps = 8/207 (3%)

Query: 36  NGLNALHLASKDGHLHVVTELL----SRGANVDSATKKGNTALHIASLGEFLVPVWLGDF 91
           +G + LHLA       +  E++       A ++       T LH+A +            
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 92  KQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
              D            H       L +        T   +               +    
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN----GHTCLH 116

Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
              +       +   +  A +  +  C    A  L+    N      L+K   + +  + 
Sbjct: 117 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY 176

Query: 212 SGFTPLHIASHYGNEGVANILLDKRAD 238
            G++P  +     +  +   L     +
Sbjct: 177 QGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 16/208 (7%)

Query: 213 GFTPLHIASHYGNEGVA----NILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
           G + LH+A  +  + +       +    A +NF      TPLH+A       I   LL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR------EGHTALSIAQKL 322
             +P++   RG TPLHLA        + +L ++       +        GHT L +A   
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 323 GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKH 382
           GY+ + E L +       +    G TAL            ++   V+  L          
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALH------LAVDLQNPDLVSLLLKCGADVNRVT 175

Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQ 410
             G +P  L        + + L +   +
Sbjct: 176 YQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 62/225 (27%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
            LH+A   ++      ++                        +  +    +  +    TP
Sbjct: 5   FLHLAIIHEEKALTMEVIR----------------------QVKGDLAFLNFQNNLQQTP 42

Query: 217 LHIASHYGNEGV---------------------------------------ANILLDKRA 237
           LH+A       +                                       +       +
Sbjct: 43  LHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 102

Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP-DIPTVRGETPLHLAARANQTDIIR 296
            +  +  +G T LH+AS  G + IV  L+   A+        G T LHLA      D++ 
Sbjct: 103 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 162

Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKK 341
           +LL+ GA V+    +G++   +        +++ LG      L+ 
Sbjct: 163 LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 11/69 (15%), Positives = 19/69 (27%)

Query: 3   EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
            G T+   A    + D +   LK   D+N     G +   L        +  +L      
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

Query: 63  VDSATKKGN 71
                 +  
Sbjct: 204 NLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 36/199 (18%), Positives = 67/199 (33%), Gaps = 26/199 (13%)

Query: 3   EGHTSFLRAARAGHLD---KIIEHLKNN-VDINTANANGLNALHLASKDGHLHVVTELLS 58
           +G +    A          ++I  +K +   +N  N      LHLA       +   LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 59  RGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGF-------------TPLAVAMQ 105
            G + +    +GNT LH+A     L  V +                      T L +A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 106 QGHDKVVAVLLEND-----TRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVR----LP 156
            G+  +V +L+            +G T L +A+   +  +V++LL+              
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 157 ALHIAAKKDDTKAAKLLLE 175
              +   +  T+  + L +
Sbjct: 181 PYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 4/47 (8%)

Query: 437 GFTPLHLSASEGHADMSA----MLLEHGADVSHAAKEGHTALSIAQK 479
           G + LHL+       ++      +    A ++       T L +A  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 15/59 (25%)

Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
           +G + LHL    +   +   +++                +    A  N ++    TPLH
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIR---------------QVKGDLAFLNFQNNLQQTPLH 44

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 9e-12
 Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 23/156 (14%)

Query: 151 GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS 210
              +L +L  A K  D                              G  +  +       
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYA--------------------DGVDLTEKIPLANGH 42

Query: 211 KSGFTPLHIASHYGNEG---VANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ 267
           +   T LH+A    +     + + L+    +++     G T LH          +  LL+
Sbjct: 43  EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 102

Query: 268 NDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
             A+ +I    GETPL +A R        +L +  +
Sbjct: 103 GKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 7e-10
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 6   TSFLRAARAGHLDKIIEHLKNNVDIN------TANANGLNALHLASK---DGHLHVVTEL 56
            S   A +   +  +++   + VD+         +     ALHLA +      LH+V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 57  LSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQ-------GDGFTPLAVAMQQGHD 109
           +    N+D  T KG+TALH   L +    + L    +         G TPL +A +  H+
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 110 KVVAVLLEN 118
               +L + 
Sbjct: 128 HCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 20/134 (14%)

Query: 34  NANGLNALHLASKDGHLHVVTELLSRGANVD------SATKKGNTALHIASLG------- 80
            A  L++L  A K   +  + +  + G ++       +  +   TALH+A          
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 81  --EFLV-----PVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAM 133
             +FLV                          +    ++      +   + G TPL +A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 134 QQGHDKVVAVLLEN 147
           +  H+    +L + 
Sbjct: 123 RLKHEHCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 17/100 (17%)

Query: 380 EKHKNGLTPLHLCAQEDRVG---VAELLLKNNAQVDTPTKMD--------------IATT 422
             H+   T LHL  +        + + L++N+  +D  T                     
Sbjct: 40  NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 99

Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGAD 462
           LL   A     + +G TPL ++    H     +L +  + 
Sbjct: 100 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
           + ++ ++SG TPL IA    +E    +L    + 
Sbjct: 106 SIEIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 21/154 (13%), Positives = 48/154 (31%), Gaps = 17/154 (11%)

Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARA------REGHTAL---SIAQKLGYISVEESL 331
             L  A +      +     +G  +  +           TAL     +     + + + L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL 391
                +  K+ G+                ++  L+G     I        +++G TPL +
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA-------NESGETPLDI 120

Query: 392 CAQEDRVGVAELLLKNNA-QVDTPTKMDIATTLL 424
             +       ELL +  + + ++   ++    LL
Sbjct: 121 AKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (140), Expect = 6e-11
 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASV------LSSTTGNAATGGYLIKNEHNPDVTS 210
            L  AA+       ++L+          +      L++  G+ +T   L++   + D  +
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270
           K   TPLH+A+  G+  +  +LL   ADVN      +T LH A+      +V  L++  A
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 271 NPDIPTVRGETPLHLAARANQTDIIRIL 298
           +    +   +T   ++      D+  IL
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (130), Expect = 1e-09
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 2/152 (1%)

Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
             L  A+  G +    IL+   A    +   G +PLH+A+  G  +    LL+   + D 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
            T    TPLH+AA     +I+ +LL++GA V+A+     TAL  A +  +  V E L   
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE-LLIK 121

Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLK 366
             + +  + +   TA  I+   G   + E L+
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (109), Expect = 8e-07
 Identities = 38/176 (21%), Positives = 58/176 (32%), Gaps = 27/176 (15%)

Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
             L  AARA Q D +RIL+ NGA               AQ   + + E  L A      +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
            +       ++ ++    I       G             K    +T LH   + +   V
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVN--------AKDMLKMTALHWATEHNHQEV 115

Query: 401 AELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
            ELL+K  A V T +K                      T   +S   G+ D++ +L
Sbjct: 116 VELLIKYGADVHTQSKF-------------------CKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (101), Expect = 8e-06
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 52/160 (32%)

Query: 29  DINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWL 88
           D+          L  A++ G    V  L++ GA        G + LH+A+         +
Sbjct: 1   DLGKK-------LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEV 52

Query: 89  ----------------------------------------GDFKQGDGFTPLAVAMQQGH 108
                                                    + K     T L  A +  H
Sbjct: 53  LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH 112

Query: 109 DKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVL 144
            +VV +L++      T+ K   T   +++  G++ +  +L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 4   GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELL 57
             T+   A    H + +   +K   D++T +     A  ++  +G+  +  E+L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA-EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHT 472
             L  +A  G  D   +L+ +GA        G +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPF-TTDWLGTS 36

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 46/150 (30%)

Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTK------------------------------ 416
             L   A+  +     +L+ N A   T                                 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 417 ----------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
                            +I   LL++GA  NA+ +   T LH +    H ++  +L+++G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 461 ADVSHAAKEGHTALSIAQKLGYISVEESLK 490
           ADV   +K   TA  I+   G   + E L+
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 1e-08
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 7/153 (4%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPAS------VLSSTTGNAATGGYLIKNEHNPDVTS 210
            L  AA + D +    LL+ +  V+  +      +     GN      L+    NPD+  
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKD 63

Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC-MNIVIYLLQND 269
           ++GF  +H A+  G       LL+ +ADVN     G  PLH+A+  G    +   +    
Sbjct: 64  RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 123

Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNG 302
           +N      +G+T   LA    + +++ ++  NG
Sbjct: 124 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 5e-08
 Identities = 30/152 (19%), Positives = 44/152 (28%), Gaps = 15/152 (9%)

Query: 39  NALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGD------FK 92
           N L  A+  G L  +T LL    NV++    G TAL +  LG   +   L         K
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 93  QGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQG---------HDKVVAV 143
              GF  +  A + G    +  LLE             + +               V   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 144 LLENDTRGKVRLPALHIAAKKDDTKAAKLLLE 175
                 R      A  +A      +   L+  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 11  AARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKG 70
           AA  G L+++   L+NNV++N  N  G  AL +            LL             
Sbjct: 8   AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGF 67

Query: 71  NTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVL-----------LEND 119
                 A  G       L +F+           +          L               
Sbjct: 68  AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 127

Query: 120 TRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
            R   G T   +A   G ++VV+++  N
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 1/151 (0%)

Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
             L  A+  G+      LL    +VN     G T       +G   I   LL   ANPD+
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA-LQVMKLGNPEIARRLLLRGANPDL 61

Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
               G   +H AARA   D ++ LL   A V+    EG+  L +A K G++ V E L   
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESL 365
             S +  R  +G TA  +A+  G   V   +
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 7/160 (4%)

Query: 248 TPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
             L  A+  G +  +  LLQN+ N +     G T L +    N     R+L   GA  D 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLL-LRGANPDL 61

Query: 308 RAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKG 367
           + R G   +  A + G++   ++L   +     +           A++     VE  +K 
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 368 VTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKN 407
               +        ++  G T   L     R  V  L+  N
Sbjct: 122 TASNVGH------RNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471
             L  +A+ G  +    LL++  +V+     G 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 5/30 (16%), Positives = 13/30 (43%)

Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHG 460
              +  G T   L+   G  ++ +++  +G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 23  HLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
                 ++   N  G  A  LA   G   VV+ + + G
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 32/183 (17%), Positives = 44/183 (24%), Gaps = 29/183 (15%)

Query: 278 RGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAER 336
           R    L  AA       +R LL R     DA  R G TAL +          E L     
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 337 SQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQED 396
             ++          +               G                 G  P+HL     
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN--------VPDGTGALPIHLA---- 108

Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
                                    + L   +  +     G TPL L+   G  D+  +L
Sbjct: 109 ----------------VQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 457 LEH 459
             H
Sbjct: 153 QGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 10/151 (6%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASV--------LSSTTGNAATGGYLIKNEHNPDV 208
            L  AA + D +  + LL     V P ++             G+ A    L+K   +P+V
Sbjct: 5   RLSGAAARGDVQEVRRLLH-RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
              SG +P+H A+  G      +L++  ADVN    +G  P+H+A   G   +V +L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILL 299
            ++      RG TPL LA +    D++ IL 
Sbjct: 124 -SDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 43/151 (28%)

Query: 39  NALHLASKDGHLHVVTELLSR-GANVDSATKKGNTALHIASLGEFLVPVWLG-------- 89
           + L  A+  G +  V  LL R   + D+  + G TAL +   G   + + L         
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 90  -------------------------------DFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
                                          +   G G  P+ +A+Q+GH  VV+ L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 119 ---DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
                R   G TPL +A+Q+G   +V +L  
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI 263
            + +V   +G  P+H+A   G+  V + L    +D++     GLTPL +A   G  ++V 
Sbjct: 92  ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVD 150

Query: 264 YLLQ 267
            L  
Sbjct: 151 ILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 211 KSGFTPLHIASHYGN-EGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
           ++G   L  A+  G+ + V  +L  +    +   + G T        G   I + LL+  
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQG 58

Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
           A+P++    G +P+H AAR    D +++L+ +GA V+     G   + +A + G+ +V  
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKG 367
            L A   S L +R   G T L +A + G   + + L+G
Sbjct: 119 FLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 12/51 (23%), Positives = 20/51 (39%)

Query: 8   FLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLS 58
            +  A       ++  L    D++  +A GL  L LA + G   +V  L  
Sbjct: 104 PIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 14/123 (11%)

Query: 38  LNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGD------- 90
           L  L  +S +G   +V  ++    +      +G TALH A        V           
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 91  FKQGDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKDGFTPLAVAMQQGHDKVVAV 143
               DG+TPL  A    + +V   L+E+                     M++G+ +    
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 144 LLE 146
           L  
Sbjct: 122 LYG 124

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-07
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
             L  +S  G   +   ++ +  D +     G+T LH A   G   IV +L+Q   N + 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDAR-AREGHTALSIAQKLGY--------- 324
               G TPLH AA  N   + + L+ +GA V A    +  TA    +++           
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 325 ISVEESLG 332
             V+E +G
Sbjct: 123 YGVQEKMG 130

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 10/127 (7%)

Query: 155 LPALHIAAKKDDTKAAKLLLEVSCTVD-------PASVLSSTTGNAATGGYLIKNEHNPD 207
           L  L  ++ + +    + ++               A   +   G+     +L++   N +
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL---TPLHVASFMGCMNIVIY 264
                G+TPLH A+   N  V   L++  A V     S +            G      +
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 265 LLQNDAN 271
           L      
Sbjct: 122 LYGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 17/128 (13%)

Query: 386 LTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV---------- 435
           L  L   + E    + + ++        P    I        A                 
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 436 ----AGFTPLHLSASEGHADMSAMLLEHGADVSHA-AKEGHTALSIAQKL--GYISVEES 488
                G+TPLH +AS  +  +   L+E GA V      +  TA    +++  GY    + 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 489 LKGVTETL 496
           L GV E +
Sbjct: 122 LYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 247 LTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
           L  L  +S  G  ++V  ++    +P +P   G T LH A  A  T+I++ L++ G  V+
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 307 ARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKL--GYISVEES 364
           A   +G T L  A     + V + L  +  +       +  TA    +++  GY    + 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 365 LKGVTETL 372
           L GV E +
Sbjct: 122 LYGVQEKM 129

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 3e-07
 Identities = 20/119 (16%), Positives = 30/119 (25%), Gaps = 11/119 (9%)

Query: 39  NALHLASKDGHLHVVTELLSRGANVDSATKKGN-----------TALHIASLGEFLVPVW 87
           + L  A+  G +  V  LL  GAN ++    G                +  L        
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 88  LGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
                                  +       D R   G  P+ +A + GH  V   L  
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-05
 Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 7/127 (5%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
               L  AA   + + +R LL  GA  +A    G   + +                E   
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVA-------ELLL 55

Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRV 398
           L           ++ + +   + E  L  +            +   G  P+ L  +    
Sbjct: 56  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR 115

Query: 399 GVAELLL 405
            VA  L 
Sbjct: 116 DVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-05
 Identities = 32/120 (26%), Positives = 47/120 (39%)

Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
             L  A+  G       LL+  A+ N     G  P+ V          + LL        
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
                  P+H AAR    D + +L R GA++D R   G   + +A++LG+  V   L AA
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 1e-04
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 7/118 (5%)

Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVD-------PASVLSSTTGNAATGGYLIKNEHNPDVT 209
            L  AA +   +  + LLE     +           +            L+         
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ 267
             +   P+H A+  G      +L    A ++     G  P+ +A  +G  ++  YL  
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 29/107 (27%), Positives = 44/107 (41%)

Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
                A   G+       + K  DVN + + G  PLH A+  G + I+ +LL   A+ + 
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
           P     TPL  A        +++LL  GA    +  +G TAL     
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN 110

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 10/126 (7%)

Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
            +     A +    D ++  +  G  V+     G                      + + 
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP-LHYAADCGQLEILEFLLLKGAD 60

Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRV 398
           +    +   T L  A   G++S  + L        +      K  +GLT L     +   
Sbjct: 61  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV------KGPDGLTALEATDNQA-- 112

Query: 399 GVAELL 404
            +  LL
Sbjct: 113 -IKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	529
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-54  Score=412.41  Aligned_cols=386  Identities=35%  Similarity=0.548  Sum_probs=293.1

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccc
Q psy2356           5 HTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLV   84 (529)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~   84 (529)
                      .||||.||..|++++|++|+++|++++..|..|+||||+||..|+.++|++|+++|++++.++..|.|            
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t------------   68 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT------------   68 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC------------
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCC------------
Confidence            49999999999999999999999999999999999999999999999999999999999887766555            


Q ss_pred             cccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHH
Q psy2356          85 PVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHI  160 (529)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~  160 (529)
                                    ||++|+..|+.+++++|+.....    .....+++..+...+...........+            
T Consensus        69 --------------~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  122 (408)
T d1n11a_          69 --------------PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE------------  122 (408)
T ss_dssp             --------------HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT------------
T ss_pred             --------------HHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhccccccccccccc------------
Confidence                          45566888999999999887554    334456666666666555544443322            


Q ss_pred             HhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Q psy2356         161 AAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN  240 (529)
Q Consensus       161 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  240 (529)
                                                                 ...+..+..+.++++.|+..++.+++++|+++|++++
T Consensus       123 -------------------------------------------~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_         123 -------------------------------------------ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             -------------------------------------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             -------------------------------------------ccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                                                       2233344555667777777777777777777777766


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHH
Q psy2356         241 FSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ  320 (529)
Q Consensus       241 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  320 (529)
                      ..+..+.+||++|+..++.+++++|+++|++++..+..|.||+|.++.....++...|+..+......+..+.||+++|+
T Consensus       160 ~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHH
Confidence            66666677777777777777777777777776666666777777777777777777776666666666666667777777


Q ss_pred             HcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHH
Q psy2356         321 KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV  400 (529)
Q Consensus       321 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  400 (529)
                      ..++.++++++... .......+..|.+|++.++..++.++++++.      ....+.+..+..+.|||+.++..++.++
T Consensus       240 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll------~~g~~~~~~~~~~~t~L~~~~~~~~~~~  312 (408)
T d1n11a_         240 QEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLI------KHGVMVDATTRMGYTPLHVASHYGNIKL  312 (408)
T ss_dssp             HTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH------HHTCCTTCCCSSCCCHHHHHHHSSCSHH
T ss_pred             HhCcHhHhhhhhcc-ccccccccCCCCChhhhhhhcCcHHHHHHHH------HCCCccccccccccccchhhcccCccee
Confidence            77777776666443 3445555666677777777777777766662      1223335566678899999999998888


Q ss_pred             HHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHh
Q psy2356         401 AELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKL  480 (529)
Q Consensus       401 ~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  480 (529)
                      +++++++                   |+++|.+|..|+||||+|+++|+.++|++|+++||+++.+|..|.|||++|++.
T Consensus       313 ~~~ll~~-------------------g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         313 VKFLLQH-------------------QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             HHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             eeeeccc-------------------cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            8877765                   567788999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHhhcccchhh
Q psy2356         481 GYISVEESLKGVTETLI  497 (529)
Q Consensus       481 ~~~~~~~~L~~~~~~~~  497 (529)
                      |+.++|++|........
T Consensus       374 ~~~~iv~~L~~~~~~~~  390 (408)
T d1n11a_         374 GYISVTDVLKVVTDETS  390 (408)
T ss_dssp             TCHHHHHHHHHHCCCCS
T ss_pred             CCHHHHHHHHHHHhccc
Confidence            99999998865544333

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-46  Score=358.99  Aligned_cols=368  Identities=36%  Similarity=0.507  Sum_probs=321.4

Q ss_pred             ChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhh
Q psy2356          38 LNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE  117 (529)
Q Consensus        38 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~  117 (529)
                      .||||+||..|+.++|++|+++|++++..+..|.||                          ||+|+..|+.+++++|++
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~Tp--------------------------L~~A~~~g~~~iv~~Ll~   54 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP--------------------------LHMAARAGHTEVAKYLLQ   54 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH--------------------------HHHHHHHTCHHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCH--------------------------HHHHHHcCCHHHHHHHHH
Confidence            389999999999999999999999999877665555                          556688999999999999


Q ss_pred             cCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCc
Q psy2356         118 NDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNA  193 (529)
Q Consensus       118 ~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  193 (529)
                      +|++    +..|.|||++|+..|+.+++++|+.....                                           
T Consensus        55 ~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-------------------------------------------   91 (408)
T d1n11a_          55 NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-------------------------------------------   91 (408)
T ss_dssp             HTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-------------------------------------------
T ss_pred             CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhc-------------------------------------------
Confidence            9776    66778888888888888888877764432                                           


Q ss_pred             hhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy2356         194 ATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD  273 (529)
Q Consensus       194 ~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~  273 (529)
                                  +........+++..+...+...........+......+..+.++++.|+..++.+++++|+++|.+++
T Consensus        92 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          92 ------------PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             ------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ------------cccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                        12233345788999999999998888888999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHH
Q psy2356         274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIA  353 (529)
Q Consensus       274 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a  353 (529)
                      ..+..|.+||++|+..++.+++++|+++|++++..+..|.||++.+....+.+....++.... .....+..+.||++.|
T Consensus       160 ~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~t~l~~a  238 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLA  238 (408)
T ss_dssp             CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHH
T ss_pred             cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccc-cccccCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999865543 3345567789999999


Q ss_pred             HHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCc
Q psy2356         354 QKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAE  433 (529)
Q Consensus       354 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~  433 (529)
                      +..+..++++++..      .....+..+..|.|||+.|+..++.+++++|+++                   |++++..
T Consensus       239 ~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~-------------------g~~~~~~  293 (408)
T d1n11a_         239 AQEGHAEMVALLLS------KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-------------------GVMVDAT  293 (408)
T ss_dssp             HHTTCHHHHHHHHT------TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-------------------TCCTTCC
T ss_pred             HHhCcHhHhhhhhc------cccccccccCCCCChhhhhhhcCcHHHHHHHHHC-------------------CCccccc
Confidence            99999999988722      2223356678899999999999999999988876                   4566777


Q ss_pred             ccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhccCCCCccccchhh
Q psy2356         434 SVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPE  512 (529)
Q Consensus       434 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  512 (529)
                      +..+.|||+.|+..++.+++++++++|++++.+|..|.||||+|++.|+.++|++|+++++++.+.+..|++...++-+
T Consensus       294 ~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~  372 (408)
T d1n11a_         294 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR  372 (408)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred             cccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            7889999999999999999999999999999999999999999999999999999999999999999999998877643

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-36  Score=272.07  Aligned_cols=240  Identities=24%  Similarity=0.262  Sum_probs=179.9

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHH
Q psy2356           1 SGEGHTSFLRAARAGHLDKIIEHLKNNVD---INTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIA   77 (529)
Q Consensus         1 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a   77 (529)
                      +++|+||||.||+.|+.+++++|++.|++   ++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||    
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp----   81 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA----   81 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH----
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh----
Confidence            57999999999999999999999999877   66788899999999999999999999999999999877665554    


Q ss_pred             hhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCC-CCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcC
Q psy2356          78 SLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKD-GFTPLAVAMQQGHDKVVAVLLENDTRGKVRLP  156 (529)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  156 (529)
                                            |++|+..++.+++++|++....... ....+..............             
T Consensus        82 ----------------------L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  126 (255)
T d1oy3d_          82 ----------------------LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA-------------  126 (255)
T ss_dssp             ----------------------HHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------
T ss_pred             ----------------------hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHH-------------
Confidence                                  5566788899999999987655222 1111111111000000000             


Q ss_pred             HHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy2356         157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR  236 (529)
Q Consensus       157 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  236 (529)
                      .+...........                         ........+..++.++..|.||||+|+..++.+++++|++.+
T Consensus       127 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~  181 (255)
T d1oy3d_         127 PAAVDSQPNPENE-------------------------EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG  181 (255)
T ss_dssp             ------------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHhhcchhHH-------------------------HHHHhhhcCcccccccccCcccccccccccccccccchhccc
Confidence            0000000000000                         000111334456678889999999999999999999999999


Q ss_pred             CCCccc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy2356         237 ADVNFS-AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ  304 (529)
Q Consensus       237 ~~~~~~-~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  304 (529)
                      ++.+.. +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|++.++.+++++|+++|++
T Consensus       182 ~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            988754 56799999999999999999999999999999999999999999999999999999999997

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-35  Score=264.91  Aligned_cols=256  Identities=26%  Similarity=0.334  Sum_probs=189.2

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTAN-ANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE   81 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~   81 (529)
                      ++.|+|+.||+.|+.++|++|+++|++++.++ ..|+||||+|+..|+.+++++|++.|......+..+.+         
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~---------   74 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT---------   74 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC---------
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccch---------
Confidence            57899999999999999999999999998665 57999999999999999999999999988766655444         


Q ss_pred             ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCC-------
Q psy2356          82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTR-------  150 (529)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~-------  150 (529)
                                       |...|+..+..+...+++.....    +..+.++++.|+..++...++.++.....       
T Consensus        75 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  137 (285)
T d1wdya_          75 -----------------PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT  137 (285)
T ss_dssp             -----------------HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC
T ss_pred             -----------------hhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccc
Confidence                             55566777778888777776443    56677888888888888888777765332       


Q ss_pred             -------CCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHc
Q psy2356         151 -------GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHY  223 (529)
Q Consensus       151 -------~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~  223 (529)
                             ...+.|||++|+..++.+++++|++                         ..+.+++..+..+.++...+...
T Consensus       138 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-------------------------~~~~~i~~~~~~~~~~~~~~~~~  192 (285)
T d1wdya_         138 KEDQERLRKGGATALMDAAEKGHVEVLKILLD-------------------------EMGADVNACDNMGRNALIHALLS  192 (285)
T ss_dssp             CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH-------------------------TSCCCTTCCCTTSCCHHHHHHHC
T ss_pred             hhhhhhhcccCchHHHHHHHcCCHHHHHHHHh-------------------------ccCCCcccccCCCCccccccccc
Confidence                   2234567777777777777777765                         33445555666666666555443


Q ss_pred             C----CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy2356         224 G----NEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAARANQTDIIRIL  298 (529)
Q Consensus       224 ~----~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  298 (529)
                      +    ..+++++|+++|++++.++..|.||||.|+..|+.+++++|++. |++++..|.+|.||||+|++.|+.+++++|
T Consensus       193 ~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~L  272 (285)
T d1wdya_         193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            2    24567777777777777777777777777777777777777764 677777777777777777777777777777


Q ss_pred             HHCCCCccccc
Q psy2356         299 LRNGAQVDARA  309 (529)
Q Consensus       299 l~~g~~~~~~~  309 (529)
                      +++|+++|.+|
T Consensus       273 l~~GAd~n~~d  283 (285)
T d1wdya_         273 CKRGASTDCGD  283 (285)
T ss_dssp             HHHSSCSCCSS
T ss_pred             HHCCCCCCccc
Confidence            77777776654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-36  Score=269.02  Aligned_cols=245  Identities=23%  Similarity=0.257  Sum_probs=173.5

Q ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356         207 DVTSKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL  283 (529)
Q Consensus       207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l  283 (529)
                      .+.+++|.||||+|+.+|+.+++++|+++|++   ++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            45677888888888888888888888888877   455667788888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHH
Q psy2356         284 HLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE  363 (529)
Q Consensus       284 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  363 (529)
                      |+|+..++.+++++|++.+.........   .+............                  ..++.............
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~  141 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASD---TYLTQSQDCTPDTS------------------HAPAAVDSQPNPENEEE  141 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------------
T ss_pred             hhhhccCchHHHHHHHhhccchhcccch---hhhhHHhhhcccch------------------HHHHHHHhhcchhHHHH
Confidence            8888888888888888765443221111   11110000000000                  00000000000000000


Q ss_pred             HhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHH
Q psy2356         364 SLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL  443 (529)
Q Consensus       364 ~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~  443 (529)
                      ...     .......+..+..|.||||+|+..++.+++++|++++++.+                  +.++..|.||||+
T Consensus       142 ~~~-----~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~------------------~~~~~~g~TpL~~  198 (255)
T d1oy3d_         142 PRD-----EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN------------------KPEPTCGRTPLHL  198 (255)
T ss_dssp             --C-----CCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT------------------CCCTTTCCCHHHH
T ss_pred             HHh-----hhcCcccccccccCcccccccccccccccccchhccccccc------------------ccccccccccccc
Confidence            000     00122236678889999999999999999999998766543                  2345679999999


Q ss_pred             HHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccch
Q psy2356         444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTET  495 (529)
Q Consensus       444 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  495 (529)
                      |++.|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|+++|+.
T Consensus       199 A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=256.00  Aligned_cols=219  Identities=26%  Similarity=0.418  Sum_probs=180.4

Q ss_pred             chhHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           4 GHTSFLRAARAGHLDKIIEHLK-NNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      +++.|+.+|..|+++.|+.+++ .+.+++.+|..|+||||+||..|+.+++++|++.+.+....+..             
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~-------------   69 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-------------   69 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT-------------
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccc-------------
Confidence            5789999999999999988886 56788999999999999999999999999999988776554332             


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHh
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAA  162 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~  162 (529)
                                                                +.++++.++..++.+++++|++++              
T Consensus        70 ------------------------------------------~~~~~~~~~~~~~~~i~~~Ll~~~--------------   93 (223)
T d1uoha_          70 ------------------------------------------GWSPLHIAASAGRDEIVKALLGKG--------------   93 (223)
T ss_dssp             ------------------------------------------CCCHHHHHHHHTCHHHHHHHHHTT--------------
T ss_pred             ------------------------------------------ccccccccccccccchhHHHhccC--------------
Confidence                                                      233444444444444444444322              


Q ss_pred             hCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccc
Q psy2356         163 KKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS  242 (529)
Q Consensus       163 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  242 (529)
                                                               .+++..+..|.||||+|+.+|+.+++++|+++|++++..
T Consensus        94 -----------------------------------------~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~  132 (223)
T d1uoha_          94 -----------------------------------------AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK  132 (223)
T ss_dssp             -----------------------------------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             -----------------------------------------ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCc
Confidence                                                     233455667889999999999999999999999999988


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHc
Q psy2356         243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKL  322 (529)
Q Consensus       243 ~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  322 (529)
                      +..|.|||++|+..++.+++++|.+.+.+++..+..|+||||.|+..|+.+++++|+++|++++.+|.+|+||||+| ..
T Consensus       133 ~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~  211 (223)
T d1uoha_         133 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KG  211 (223)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CT
T ss_pred             CCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999887 57


Q ss_pred             CChhHHHHhhh
Q psy2356         323 GYISVEESLGA  333 (529)
Q Consensus       323 ~~~~~~~~l~~  333 (529)
                      |+.+++++|++
T Consensus       212 ~~~~i~~~Ll~  222 (223)
T d1uoha_         212 GLGLILKRMVE  222 (223)
T ss_dssp             THHHHHHHHHC
T ss_pred             CCHHHHhcccC
Confidence            88888888864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=256.99  Aligned_cols=218  Identities=25%  Similarity=0.292  Sum_probs=168.1

Q ss_pred             CCHHHHHHHcCCHHHHHHHH-hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356         214 FTPLHIASHYGNEGVANILL-DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT  292 (529)
Q Consensus       214 ~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~  292 (529)
                      .+.++.++..|+.+.++.++ ..+..++.+|..|+||||+|+..|+.+++++|++.+......+..+.++++.++..++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            46677777777777775544 45566777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHH
Q psy2356         293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL  372 (529)
Q Consensus       293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~  372 (529)
                      +++++|+++|++++..+..|.||||+|+..|+.+++++|++.. .+++                                
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g-~d~~--------------------------------  130 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPD--------------------------------  130 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTT--------------------------------
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCC-CCCC--------------------------------
Confidence            7777777777777777777777887777777777777775432 2222                                


Q ss_pred             HHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHH
Q psy2356         373 IIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM  452 (529)
Q Consensus       373 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~  452 (529)
                             ..+..|.||||+|+..++.+++++|+..                   |.+++.++..|+||||+|+.+|+.++
T Consensus       131 -------~~~~~~~t~L~~a~~~~~~~~~~~L~~~-------------------~~~i~~~d~~g~TpL~~Aa~~g~~~~  184 (223)
T d1uoha_         131 -------AKDHYEATAMHRAAAKGNLKMIHILLYY-------------------KASTNIQDTEGNTPLHLACDEERVEE  184 (223)
T ss_dssp             -------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-------------------TCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             -------CcCCCCCccchhhhhcCCcchhhhhccc-------------------cceeeeccCCCCceeccccccCcHHH
Confidence                   2344566677777777777766666654                   56678888899999999999999999


Q ss_pred             HHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhc
Q psy2356         453 SAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG  491 (529)
Q Consensus       453 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  491 (529)
                      |++|+++|++++.+|..|+||||+|. .|+.+++++|++
T Consensus       185 v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         185 AKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            99999999999999999999999984 799999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.1e-35  Score=269.37  Aligned_cols=259  Identities=20%  Similarity=0.243  Sum_probs=202.6

Q ss_pred             CHHHHHHHc-CCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHH--------HHCCCCCCCCCCCCCcHHHH
Q psy2356         215 TPLHIASHY-GNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL--------LQNDANPDIPTVRGETPLHL  285 (529)
Q Consensus       215 t~l~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~L--------l~~g~~~~~~~~~~~t~l~~  285 (529)
                      ||||+++.. |..++++.|.+.+.+.... ..|+||||+|+..|+.+++++|        ++.|+++|.+|..|.||||+
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc
Confidence            677755544 5566666666666554322 3478888888888887776655        56788899888899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcc--cccccCCCCCCcHHHHHHHhCchhHHH
Q psy2356         286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAER--SQLKKRGREGHTALSIAQKLGYISVEE  363 (529)
Q Consensus       286 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~  363 (529)
                      |+..|+.+++++|+++|++++.++..|.||++.|...++.++++++.....  ..+...+..+.++.+.+......+...
T Consensus        81 A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA  160 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccc
Confidence            999999999999999999998888889999999999999888888855432  345566777888888888877666444


Q ss_pred             HhhhhhhHH-----HHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCC
Q psy2356         364 SLKGVTETL-----IIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF  438 (529)
Q Consensus       364 ~l~~~~~~~-----~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~  438 (529)
                      .........     .........+..|.||||+++..++.+++++++..                  .+.+++.++..|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~------------------~~~~~~~~d~~g~  222 (277)
T d2fo1e1         161 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE------------------KGSNKDKQDEDGK  222 (277)
T ss_dssp             HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH------------------SCCCTTCCCTTCC
T ss_pred             cccccccccccccccccccccccccCCCCcccccccccccccccccccc------------------ccccccccCCCCC
Confidence            332221111     01112245667799999999999999998876643                  4667788899999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356         439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV  492 (529)
Q Consensus       439 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  492 (529)
                      ||||+|++.|+.++|++|+++|++++.+|..|.||||+|++.|+.++|++|++.
T Consensus       223 tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         223 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.7e-35  Score=267.78  Aligned_cols=247  Identities=27%  Similarity=0.343  Sum_probs=205.6

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2356         212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ  291 (529)
Q Consensus       212 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  291 (529)
                      .+.|+|+.|+..|+.++|++|+++|++++..|.+|.|||++|+..|+.+++++|+++|.+....+..+.+||+.++..++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhH
Q psy2356         292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTET  371 (529)
Q Consensus       292 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~  371 (529)
                      .++++.|+++|+..+..+..+.+++++|+..+..+.++.++.............+..+..             .......
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-------------~~~~~~~  185 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-------------RDARQWL  185 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------------HHHHHHH
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhcccccccccccccccccccccccc-------------ccchhhh
Confidence            999999999999999999999999999999999999999976554332211110000000             0000111


Q ss_pred             HHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHH
Q psy2356         372 LIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD  451 (529)
Q Consensus       372 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~  451 (529)
                      ..........+..|.||||.|+..|+.+++++|+++                   |+|+|.++..|+||||+|++.|+.+
T Consensus       186 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-------------------g~din~~~~~g~TpL~~A~~~g~~~  246 (291)
T d1s70b_         186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-------------------RYDVNIKDYDGWTPLHAAAHWGKEE  246 (291)
T ss_dssp             HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-------------------TCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccccCCCCChhhHHHHcCChhhhcccccc-------------------eecccccccCCCCHHHHHHHcCCHH
Confidence            112223355677899999999999999999998886                   5566888889999999999999999


Q ss_pred             HHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356         452 MSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE  494 (529)
Q Consensus       452 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  494 (529)
                      +|++|+++|+|++.+|..|.|||++|++    +++++|.+...
T Consensus       247 iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~~  285 (291)
T d1s70b_         247 ACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQK  285 (291)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHhh
Confidence            9999999999999999999999999974    67777766543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-33  Score=250.97  Aligned_cols=267  Identities=27%  Similarity=0.293  Sum_probs=188.4

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356         214 FTPLHIASHYGNEGVANILLDKRADVNFSA-KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT  292 (529)
Q Consensus       214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~  292 (529)
                      .|+|+.|++.|+.++|++|+++|++++.++ ..|+||||+|+..|+.+++++|++.+......+..+.++.+.++..+..
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV   85 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCc
Confidence            466777777777777777777777666543 3466777777777777777777776666666666666677777777777


Q ss_pred             HHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcc---------cccccCCCCCCcHHHHHHHhCchhHHH
Q psy2356         293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAER---------SQLKKRGREGHTALSIAQKLGYISVEE  363 (529)
Q Consensus       293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~l~~a~~~~~~~~~~  363 (529)
                      +...+++++..+....+..+.++++.|+..++...+..++....         .........|.||||+|+..++.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  165 (285)
T d1wdya_          86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  165 (285)
T ss_dssp             HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred             cccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHH
Confidence            77766666666655566666677777777766666666643221         122344556778888888888888877


Q ss_pred             HhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHH
Q psy2356         364 SLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL  443 (529)
Q Consensus       364 ~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~  443 (529)
                      +|.+..     ..+.+..+..|.+++..+...+...               ...+++++|+++|++++.++..|.||||+
T Consensus       166 ~Ll~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~~Li~~ga~~n~~~~~g~t~L~~  225 (285)
T d1wdya_         166 ILLDEM-----GADVNACDNMGRNALIHALLSSDDS---------------DVEAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             HHHHTS-----CCCTTCCCTTSCCHHHHHHHCSCTT---------------THHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             HHHhcc-----CCCcccccCCCCcccccccccccch---------------HHHHHHHHHHHCCCCCCccCCCCCCccch
Confidence            773221     1233555666777666554433221               11234445555677888899999999999


Q ss_pred             HHHcCcHHHHHHHHhC-CCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhcc
Q psy2356         444 SASEGHADMSAMLLEH-GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAK  500 (529)
Q Consensus       444 A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  500 (529)
                      |++.|+.++|++|+++ |++++.+|..|.||||+|++.|+.+++++|+++|+++...+
T Consensus       226 a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             hhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            9999999999999985 99999999999999999999999999999999999987554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=247.96  Aligned_cols=219  Identities=23%  Similarity=0.292  Sum_probs=161.0

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcc
Q psy2356           5 HTSFLRAARAGHLDKIIEHLKN-NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFL   83 (529)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~   83 (529)
                      +||||+||..|+.+.|+.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++..+.               
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~---------------   65 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY---------------   65 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGC---------------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccc---------------
Confidence            6899999999999999999984 678899999999999999999999999999999999875432               


Q ss_pred             ccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC------CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356          84 VPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR------GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA  157 (529)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  157 (529)
                              .+..+.+|+++|+..+..++++.++..+..      +..+.++++.++..++.++++               
T Consensus        66 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------------  122 (229)
T d1ixva_          66 --------PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ---------------  122 (229)
T ss_dssp             --------CCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHH---------------
T ss_pred             --------ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhh---------------
Confidence                    233456677777777777777777766543      223334444444444444443               


Q ss_pred             HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCC-
Q psy2356         158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR-  236 (529)
Q Consensus       158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g-  236 (529)
                                    +|++.                          +...+..+..|.||||+|+..|+.+++++|++.+ 
T Consensus       123 --------------~l~~~--------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  162 (229)
T d1ixva_         123 --------------FLIEN--------------------------GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK  162 (229)
T ss_dssp             --------------HHHHT--------------------------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             --------------hhhhh--------------------------cccccccCCCCCCccchhhhccccccccccccccc
Confidence                          33322                          2233345566778888888888888888887776 


Q ss_pred             CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy2356         237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ  304 (529)
Q Consensus       237 ~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  304 (529)
                      .+++..+..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+.   .+++++|+++|+|
T Consensus       163 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            45677777788888888888888888887764 77888887778888887763   4677888887775

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.2e-33  Score=257.53  Aligned_cols=231  Identities=28%  Similarity=0.402  Sum_probs=159.0

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      +|.|+|+.||..|++++|++|+++|+++|..|..|+||||+|+..|+.++|++|+++|++....+..             
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~-------------  105 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-------------  105 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-------------
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccc-------------
Confidence            4679999999999999999999999999999999999999999999999999999999987765544             


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHH
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPAL  158 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l  158 (529)
                                   +.+||+.|+..++.+++++|++++..    +..+.+++++|+..+..+.++.++.......      
T Consensus       106 -------------~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~------  166 (291)
T d1s70b_         106 -------------GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI------  166 (291)
T ss_dssp             -------------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH------
T ss_pred             -------------ccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccc------
Confidence                         44666777899999999999998754    5678889999998888888888875432110      


Q ss_pred             HHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy2356         159 HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD  238 (529)
Q Consensus       159 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  238 (529)
                      ..+...                                                       ............+......
T Consensus       167 ~~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~~~~~  191 (291)
T d1s70b_         167 EAARKE-------------------------------------------------------EERIMLRDARQWLNSGHIN  191 (291)
T ss_dssp             HHHHHH-------------------------------------------------------HHHHHHHHHHHHHHHTCCC
T ss_pred             cccccc-------------------------------------------------------ccccccccchhhhcccccc
Confidence            000000                                                       0000001112222223333


Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHH
Q psy2356         239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI  318 (529)
Q Consensus       239 ~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  318 (529)
                      ....+..|.|||+.|+..|+.+++++|++.|++++..+..|.||||+|++.|+.+++++|+++|++++.+|..|.||||+
T Consensus       192 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~  271 (291)
T d1s70b_         192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV  271 (291)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTS
T ss_pred             cccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            33444455566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HH
Q psy2356         319 AQ  320 (529)
Q Consensus       319 a~  320 (529)
                      |+
T Consensus       272 A~  273 (291)
T d1s70b_         272 AD  273 (291)
T ss_dssp             CC
T ss_pred             HH
Confidence            54

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.1e-33  Score=250.71  Aligned_cols=251  Identities=23%  Similarity=0.303  Sum_probs=182.1

Q ss_pred             hhHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHH--------HHCCCCCCCCCCCCCchHH
Q psy2356           5 HTSFLRAARAG-HLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTEL--------LSRGANVDSATKKGNTALH   75 (529)
Q Consensus         5 ~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~L--------l~~ga~~~~~~~~~~~~l~   75 (529)
                      .||||.|++.+ +.++++.|.+.+++... +..|+||||+||..|+.++|++|        ++.|++++.+|..|.||  
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~Tp--   77 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP--   77 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH--
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCee--
Confidence            37788666554 55555555455555432 24699999999999999999887        56799999877766655  


Q ss_pred             HHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcC---
Q psy2356          76 IASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLEND---  148 (529)
Q Consensus        76 ~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~---  148 (529)
                                              ||+|+..|+.++|++|+++|++    +..|.||++.|+..++.++++++....   
T Consensus        78 ------------------------Lh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~  133 (277)
T d2fo1e1          78 ------------------------LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK  133 (277)
T ss_dssp             ------------------------HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred             ------------------------eccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhccccc
Confidence                                    5566889999999999999876    678999999999999999999987652   


Q ss_pred             ----CCCCCCcCHHHHHhhCCChHH---HHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHH
Q psy2356         149 ----TRGKVRLPALHIAAKKDDTKA---AKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIAS  221 (529)
Q Consensus       149 ----~~~~~~~~~l~~a~~~~~~~~---~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~  221 (529)
                          .......++...+...+..+.   +..+.+.......                  ......+..+..+.|+||+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~t~L~~~~  195 (277)
T d2fo1e1         134 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY------------------DGAARKDSEKYKGRTALHYAA  195 (277)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC------------------CSGGGTSSSSCCCCCTHHHHH
T ss_pred             ccccccccccchhHHHHHhcccccccccccccccccccccc------------------cccccccccccCCCCcccccc
Confidence                234456678888777766553   3333332222111                  111223445566778888888


Q ss_pred             HcCCHHHHHHH-HhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy2356         222 HYGNEGVANIL-LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR  300 (529)
Q Consensus       222 ~~~~~~~v~~L-l~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  300 (529)
                      ..++.+.++++ ...+.+.+..+..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+++|+.+++++|++
T Consensus       196 ~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         196 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             SSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            88888877754 45667777777778888888888888888888888888888888888888888888888888887765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=235.20  Aligned_cols=222  Identities=26%  Similarity=0.360  Sum_probs=160.5

Q ss_pred             CHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy2356         156 PALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK  235 (529)
Q Consensus       156 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  235 (529)
                      +|||+|+..|+.++++.|++                         ..+..++.++.+|.||||+|+..|+.+++++|+++
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~-------------------------~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~   56 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLH-------------------------SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK   56 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH-------------------------HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HhHHHHHHcCCHHHHHHHHH-------------------------cCCCcccccCCCCCCHHHHHHHcCCccccchhhhh
Confidence            46666666666666666665                         33445566777788888888888888888888888


Q ss_pred             CCCCcc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccc
Q psy2356         236 RADVNF---SAKSGLTPLHVASFMGCMNIVIYLLQNDANP--DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR  310 (529)
Q Consensus       236 g~~~~~---~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~--~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  310 (529)
                      |++++.   .+..|.+|+++++..+..++++.++..+...  ...+..+.++++.++..++.+++++|++.|.+.+..+.
T Consensus        57 ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  136 (229)
T d1ixva_          57 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK  136 (229)
T ss_dssp             CTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCC
Confidence            877653   4556778888888888888888777776543  34555677888888888888888888888887777777


Q ss_pred             cCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHH
Q psy2356         311 EGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLH  390 (529)
Q Consensus       311 ~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~  390 (529)
                      .|+||+|+|+..|+.+++++|+......++                                       ..+..|.||||
T Consensus       137 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in---------------------------------------~~d~~g~TpLh  177 (229)
T d1ixva_         137 FNQIPLHRAASVGSLKLIELLCGLGKSAVN---------------------------------------WQDKQGWTPLF  177 (229)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHTTTCCCSC---------------------------------------CCCTTSCCHHH
T ss_pred             CCCCccchhhhccccccccccccccccccc---------------------------------------ccccccCCchh
Confidence            777888888877777777777654433333                                       34455667777


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2356         391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGAD  462 (529)
Q Consensus       391 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  462 (529)
                      +|+..|+.+++++|+++                  .|+|++.+|..|+||||+|+.   .+++++|+++|+|
T Consensus       178 ~A~~~~~~~~v~~Ll~~------------------~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         178 HALAEGHGDAAVLLVEK------------------YGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHTTCHHHHHHHHHH------------------HCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             hhcccccHHHHHHHHHh------------------cCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            77777777777776642                  366778888888888888874   4788888888876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=226.39  Aligned_cols=91  Identities=22%  Similarity=0.283  Sum_probs=76.2

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHH
Q psy2356           2 GEGHTSFLRAARAGHLDKIIEHLK----NNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIA   77 (529)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a   77 (529)
                      .||+||||.||..|++++|++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++.+.....+.+     
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~-----   75 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-----   75 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-----
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccc-----
Confidence            489999999999999999999884    78999999999999999999999999999999999998876554443     


Q ss_pred             hhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhc
Q psy2356          78 SLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN  118 (529)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~  118 (529)
                                           +++.|...++.++++.+...
T Consensus        76 ---------------------~~~~a~~~~~~~~~~~~~~~   95 (228)
T d1k1aa_          76 ---------------------AAHLACEHRSPTCLRALLDS   95 (228)
T ss_dssp             ---------------------HHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------------ccccccccccccchhhhhhc
Confidence                                 44455666666666666554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-30  Score=225.34  Aligned_cols=218  Identities=28%  Similarity=0.347  Sum_probs=138.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHH
Q psy2356         246 GLTPLHVASFMGCMNIVIYLL----QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK  321 (529)
Q Consensus       246 ~~~~l~~a~~~~~~~~v~~Ll----~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~  321 (529)
                      |.||||+|+..|+.+++++|+    +.|++++.+|..|+||||+|+..|+.+++++|+++|++.+.....+.++++.|..
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~   82 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE   82 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccc
Confidence            444444444444444444333    2344445445455555555555555555555555555544444445555555555


Q ss_pred             cCChhHHHHhhhhc---ccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCH
Q psy2356         322 LGYISVEESLGAAE---RSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRV  398 (529)
Q Consensus       322 ~~~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  398 (529)
                      .++.++++.+....   ....+.......++++.+...........+.....     .........+.++|+.|+..+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          83 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA-----DIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             cccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccc-----ccccccccchhhHHHHHHHhhhh
Confidence            55544444442221   11122333445566666666655555544411110     11134556788999999999999


Q ss_pred             HHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHH
Q psy2356         399 GVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQ  478 (529)
Q Consensus       399 ~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  478 (529)
                      .++++++++                   |.+++.++..|.||||+|+.+|+.+++++|+++|+|++.+|..|.|||++|+
T Consensus       158 ~~~~~~~~~-------------------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         158 SMVQLLLQH-------------------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHHHHHT-------------------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             hhhhhhhhh-------------------ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            888888876                   4556788888999999999999999999999999999999999999999999


Q ss_pred             HhCCchHHH
Q psy2356         479 KLGYISVEE  487 (529)
Q Consensus       479 ~~~~~~~~~  487 (529)
                      ++|+.++|+
T Consensus       219 ~~~~~divk  227 (228)
T d1k1aa_         219 SRRVIDILR  227 (228)
T ss_dssp             SHHHHHHHT
T ss_pred             hCCCccccC
Confidence            999988875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.9e-31  Score=229.22  Aligned_cols=96  Identities=29%  Similarity=0.399  Sum_probs=81.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCc-ccCCCCHHHHHHHcCcHHHHHHHHhCC
Q psy2356         382 HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAE-SVAGFTPLHLSASEGHADMSAMLLEHG  460 (529)
Q Consensus       382 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g  460 (529)
                      ...|.|||+.|+..++.+++++|+..|..                   ++.+ +.+|.||||+|++.|+.+++++|+++|
T Consensus       108 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~-------------------~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g  168 (221)
T d1iknd_         108 NYNGHTCLHLASIHGYLGIVELLVSLGAD-------------------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG  168 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCC-------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             ccccchhhhHHhhcCChhheeeecccCcc-------------------cccccccCCCCccccccccccHHHHHHHHhcC
Confidence            34577888888888888888888876554                   3443 356999999999999999999999999


Q ss_pred             CCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchh
Q psy2356         461 ADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETL  496 (529)
Q Consensus       461 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  496 (529)
                      +|++.+|..|+|||++|++.++.+++++|++...+.
T Consensus       169 ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         169 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            999999999999999999999999999999886543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=7.4e-30  Score=220.10  Aligned_cols=205  Identities=26%  Similarity=0.298  Sum_probs=137.0

Q ss_pred             HHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccc
Q psy2356         260 NIVIYLLQNDANPDI-PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ  338 (529)
Q Consensus       260 ~~v~~Ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~  338 (529)
                      |+|++|+++|++++. .|.+|.||||+||..|+.+++++|+++|++++..+..+.++++.++..++..............
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN   82 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            444555555554443 2444555555555555555555555555555555555555555555554444444443333333


Q ss_pred             cccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhH
Q psy2356         339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMD  418 (529)
Q Consensus       339 ~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  418 (529)
                      .......+.++.+.+.........+.+..      .....+..+..|.|||++++..+..++++.++++           
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~------~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-----------  145 (209)
T d1ot8a_          83 LNARMHDGTTPLILAARLAIEGMVEDLIT------ADADINAADNSGKTALHWAAAVNNTEAVNILLMH-----------  145 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCTTHHHHHHH------TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-----------
T ss_pred             cccccccccccccccccccchhhhhhhhh------hcccccccCCCCCCcchhhcccCcceeeeeeccc-----------
Confidence            34444445555555555555555554411      1112245677788999999999998888888776           


Q ss_pred             HHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHh
Q psy2356         419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL  489 (529)
Q Consensus       419 ~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  489 (529)
                              +.+++.+|..|.||||+|+..|+.++|++|+++|+|++..|..|.|||++|++.|+.++|++|
T Consensus       146 --------~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         146 --------HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             --------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             --------cccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence                    456688888999999999999999999999999999999999999999999999999999987

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=9.2e-29  Score=213.18  Aligned_cols=206  Identities=29%  Similarity=0.361  Sum_probs=145.1

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccccCC
Q psy2356          17 LDKIIEHLKNNVDINT-ANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD   95 (529)
Q Consensus        17 ~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~   95 (529)
                      -|+|++|+++|++++. .|.+|+||||+||..|+.+++++|++.|++++.++..+.++++                    
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~--------------------   61 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH--------------------   61 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH--------------------
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccc--------------------
Confidence            4799999999999987 5899999999999999999999999999999877665554444                    


Q ss_pred             CCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHHHh
Q psy2356          96 GFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLE  175 (529)
Q Consensus        96 ~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  175 (529)
                            .++..++..............                                                     
T Consensus        62 ------~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------   82 (209)
T d1ot8a_          62 ------AAVAADAMGVFQILLRNRATN-----------------------------------------------------   82 (209)
T ss_dssp             ------HHHHTTCHHHHHHHHTCTTCC-----------------------------------------------------
T ss_pred             ------ccccccccccccccccccccc-----------------------------------------------------
Confidence                  334444444333333221110                                                     


Q ss_pred             ccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHH
Q psy2356         176 VSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASF  255 (529)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~  255 (529)
                                                    .......+.++.+.+.........+.|...+++++..+..|.|||+.++.
T Consensus        83 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~  132 (209)
T d1ot8a_          83 ------------------------------LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAA  132 (209)
T ss_dssp             ------------------------------TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             ------------------------------cccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcc
Confidence                                          01112234556666666666666777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHh
Q psy2356         256 MGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL  331 (529)
Q Consensus       256 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  331 (529)
                      .+..++++.+++.+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|
T Consensus       133 ~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         133 VNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            7777777777777777777777777777777777777777777777777777777777777777777777777765

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.1e-30  Score=221.86  Aligned_cols=198  Identities=27%  Similarity=0.258  Sum_probs=143.7

Q ss_pred             CchhHHHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHh
Q psy2356           3 EGHTSFLRAARAGHLDK----IIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIAS   78 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~----v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~   78 (529)
                      ||.||||+|+..|+.++    ++++...|+++|..|..|+||||+|+..|+.+++++|++.|++++..+..|.|      
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t------   74 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNT------   74 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCC------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccc------
Confidence            79999999999999644    45566678999999999999999999999999999999999999877665544      


Q ss_pred             hcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHH
Q psy2356          79 LGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPAL  158 (529)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l  158 (529)
                                          ||++|+..++.++++.|++.+.......                                
T Consensus        75 --------------------~l~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------------------  102 (221)
T d1iknd_          75 --------------------PLHLACEQGCLASVGVLTQSCTTPHLHS--------------------------------  102 (221)
T ss_dssp             --------------------HHHHHHHHTCHHHHHHHHHSTTTTSSSC--------------------------------
T ss_pred             --------------------ccccccccccccccchhhhhcccccccc--------------------------------
Confidence                                4445567777778887777643311100                                


Q ss_pred             HHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy2356         159 HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD  238 (529)
Q Consensus       159 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~  238 (529)
                                                                    ........+.||++.|+..++.+.+++|+..|..
T Consensus       103 ----------------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~  136 (221)
T d1iknd_         103 ----------------------------------------------ILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD  136 (221)
T ss_dssp             ----------------------------------------------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ----------------------------------------------cccccccccchhhhHHhhcCChhheeeecccCcc
Confidence                                                          0011222456777777777777777777777777


Q ss_pred             CcccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy2356         239 VNFSA-KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ  304 (529)
Q Consensus       239 ~~~~~-~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  304 (529)
                      ++..+ .+|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.+.+
T Consensus       137 ~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         137 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            66544 4577777777777777777777777777777777777777777777777777777776544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=3e-28  Score=225.31  Aligned_cols=241  Identities=15%  Similarity=0.038  Sum_probs=156.1

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHH---HHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCcHH
Q psy2356         209 TSKSGFTPLHIASHYGNEGVANI---LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT--VRGETPL  283 (529)
Q Consensus       209 ~~~~~~t~l~~A~~~~~~~~v~~---Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~--~~~~t~l  283 (529)
                      ++..|.|+|++|+++|+.+++++   |++.|++++..+..|+||||+|+.+|+.++|++|++.|++++..+  ..|.|||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            45577899999999999877665   788999999999999999999999999999999999999887765  3588999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCcc---cccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchh
Q psy2356         284 HLAARANQTDIIRILLRNGAQVD---ARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYIS  360 (529)
Q Consensus       284 ~~a~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  360 (529)
                      |+|++.|+.+++++|+++|++..   ..+..+.+|++.|+.+|+.+++++|++.... .       .++.+.++..++..
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~-~-------~~~~~~~~~~~~~~  237 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-L-------AYAEIHEFEYGEKY  237 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-H-------HHHHHCTTTTTTTT
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC-c-------chHHHHHHHcCcHh
Confidence            99999999999999999987653   3445667788888899999999999764421 1       12333333344444


Q ss_pred             HHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC--CCchhHHHHHHHHcCCCCCCcccCCC
Q psy2356         361 VEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD--TPTKMDIATTLLEYGAKPNAESVAGF  438 (529)
Q Consensus       361 ~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~~~~~~L~~~g~~~~~~~~~g~  438 (529)
                      +..++...                         ..+..+....+.....+..  .........            ...+.
T Consensus       238 ~~~~~~~~-------------------------~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~------------~~~~~  280 (346)
T d2ajaa1         238 VNPFIARH-------------------------VNRLKEMHDAFKLSNPDGVFDLVTKSECLQ------------GFYML  280 (346)
T ss_dssp             HHHHHHHH-------------------------HHHHHHHHTTTTTTSSSSCCCCSSHHHHHH------------HHHHH
T ss_pred             hhHHHHHh-------------------------hccchHHHHHHHHhcccccHhHHhcccccc------------cchhh
Confidence            43333222                         2222221111111111110  001100000            00123


Q ss_pred             CHHHHHHHcCcHHHHHHHHh-----CCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356         439 TPLHLSASEGHADMSAMLLE-----HGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE  494 (529)
Q Consensus       439 t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  494 (529)
                      ++++.|+..|..+++++|++     ...+...++..|.||||+|++.|+.++|++|++.+.
T Consensus       281 ~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             HHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             hHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCCC
Confidence            56777777777777777763     233444455667777777777777777777777643

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=5.1e-28  Score=223.77  Aligned_cols=228  Identities=15%  Similarity=0.054  Sum_probs=150.7

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHH---HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccc--ccCCcH
Q psy2356         241 FSAKSGLTPLHVASFMGCMNIVIY---LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA--REGHTA  315 (529)
Q Consensus       241 ~~~~~~~~~l~~a~~~~~~~~v~~---Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~  315 (529)
                      .++..|.|||++|+.+|+.+++++   |++.|++++..+..|.||||+|+++|+.+++++|+++|++++..+  ..|.||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            456678999999999999877665   788999999999999999999999999999999999999998776  468999


Q ss_pred             HHHHHHcCChhHHHHhhhhcccc--cccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHH
Q psy2356         316 LSIAQKLGYISVEESLGAAERSQ--LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCA  393 (529)
Q Consensus       316 l~~a~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~  393 (529)
                      ||+|+..|+.+++++|++.....  .+..+..+.+|++.|+..|+.+++++|.+......             ++.+.+.
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~-------------~~~~~~~  231 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------------YAEIHEF  231 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH-------------HHHHCTT
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc-------------hHHHHHH
Confidence            99999999999999998765332  23333445566666777777777777754433221             3445555


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCH
Q psy2356         394 QEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTA  473 (529)
Q Consensus       394 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  473 (529)
                      ..++..+..+++..            ...+.+           +.++++.+...+..+++..-      .......+.++
T Consensus       232 ~~~~~~~~~~~~~~------------~~~~~~-----------~~~~l~~a~~~~~~~~~~~~------~~~~~~~~~~~  282 (346)
T d2ajaa1         232 EYGEKYVNPFIARH------------VNRLKE-----------MHDAFKLSNPDGVFDLVTKS------ECLQGFYMLRN  282 (346)
T ss_dssp             TTTTTTHHHHHHHH------------HHHHHH-----------HHTTTTTTSSSSCCCCSSHH------HHHHHHHHHHH
T ss_pred             HcCcHhhhHHHHHh------------hccchH-----------HHHHHHHhcccccHhHHhcc------cccccchhhhH
Confidence            55555555555542            111111           22334444334333222110      11112334578


Q ss_pred             HHHHHHhCCchHHHHhhcccchhhhc-----cCCCCccccch
Q psy2356         474 LSIAQKLGYISVEESLKGVTETLIIA-----KGDGEKHKVVA  510 (529)
Q Consensus       474 l~~A~~~~~~~~~~~L~~~~~~~~~~-----~~~~~~~~~~~  510 (529)
                      ++.|...++.+++++|++.+..-...     ..++++...++
T Consensus       283 l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHH
T ss_pred             HHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHH
Confidence            99999999999999999877643322     23455555444

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=183.39  Aligned_cols=83  Identities=28%  Similarity=0.394  Sum_probs=48.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhH
Q psy2356         248 TPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISV  327 (529)
Q Consensus       248 ~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  327 (529)
                      +|||.|+..|+.+++++|+++|++++.+|..|.||||+|+ .++.+++++|+++|++++..+..+.++++.++..++.+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            4566666666666666666666666666666666666554 456666666666666655555555555554444444444


Q ss_pred             HHHh
Q psy2356         328 EESL  331 (529)
Q Consensus       328 ~~~l  331 (529)
                      ++.+
T Consensus        82 ~~~l   85 (156)
T d1ihba_          82 LQTL   85 (156)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            4444

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.8e-25  Score=179.94  Aligned_cols=64  Identities=28%  Similarity=0.437  Sum_probs=41.4

Q ss_pred             CCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356         428 AKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV  492 (529)
Q Consensus       428 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  492 (529)
                      ++++.++..|.||||+|++.|+.+++++|+ .|++++.+|..|+|||++|++.|+.+++++|+++
T Consensus        92 ~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            344555556666666666666666666655 4566666666666666666666666666666654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6e-25  Score=178.58  Aligned_cols=150  Identities=35%  Similarity=0.468  Sum_probs=117.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchh
Q psy2356         281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYIS  360 (529)
Q Consensus       281 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  360 (529)
                      |||+.|++.|+.+++++|+++|++++ .+..|.||||+|+..++.++++.+.......                      
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~----------------------   60 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR----------------------   60 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT----------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccc----------------------
Confidence            67777777777777777777777665 4667777777777777777776664332211                      


Q ss_pred             HHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCH
Q psy2356         361 VEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP  440 (529)
Q Consensus       361 ~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~  440 (529)
                                        ......+.++++.++...+.++++++..+                   |++++.++..|+||
T Consensus        61 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~~~~~~g~T~  103 (153)
T d1awcb_          61 ------------------DARTKVDRTPLHMAASEGHANIVEVLLKH-------------------GADVNAKDMLKMTA  103 (153)
T ss_dssp             ------------------TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-------------------TCCTTCCCTTSCCH
T ss_pred             ------------------cccccccccccccccccccceeeeccccc-------------------CCccccccccCchH
Confidence                              12233455677778888888777777665                   55668888899999


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhh
Q psy2356         441 LHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK  490 (529)
Q Consensus       441 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  490 (529)
                      ||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.+++++|.
T Consensus       104 L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_         104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             HHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999873

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-24  Score=175.82  Aligned_cols=150  Identities=27%  Similarity=0.434  Sum_probs=108.3

Q ss_pred             HHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy2356         157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR  236 (529)
Q Consensus       157 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g  236 (529)
                      .|+.|+..|+.+++++|++                         +.+.+++..+..|.||||+|+ .++.+++++|++++
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~-------------------------~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~   58 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLH-------------------------RELVHPDALNRFGKTALQVMM-FGSTAIALELLKQG   58 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHH-------------------------TTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHH-------------------------hCCCCCCccCCCCCccccccc-cccccccccccccc
Confidence            4666666666666666665                         345566666777777777765 46677777777777


Q ss_pred             CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHH
Q psy2356         237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL  316 (529)
Q Consensus       237 ~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  316 (529)
                      .+++..+..+.+|++.++..++.++++++++.|++++.++..|.||||+|++.|+.+++++|+ .|++++.++..|+|||
T Consensus        59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL  137 (156)
T d1bd8a_          59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPL  137 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHH
Confidence            777777777777777777777777777777777777777777777777777777777777665 5677777777777777


Q ss_pred             HHHHHcCChhHHHHhhh
Q psy2356         317 SIAQKLGYISVEESLGA  333 (529)
Q Consensus       317 ~~a~~~~~~~~~~~l~~  333 (529)
                      |+|+..|+.+++++|++
T Consensus       138 ~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_         138 ELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHSCCHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHh
Confidence            77777777777777753

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=177.53  Aligned_cols=150  Identities=31%  Similarity=0.351  Sum_probs=131.6

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy2356         215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI  294 (529)
Q Consensus       215 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  294 (529)
                      ++||+|+..|+.+++++|+++|++++..|..|.||||+|+ .++.+++++|++.|++++..+..+.++++.++..+..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356         295 IRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL  365 (529)
Q Consensus       295 ~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  365 (529)
                      ++.|++++.+++..+..|.+|+++|+..++.+++++|++..+.+...++..|.||||+|+..++.+++++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999998877666666655555554444444444444443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.7e-25  Score=199.63  Aligned_cols=196  Identities=19%  Similarity=0.158  Sum_probs=128.9

Q ss_pred             HCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCCh---hHHHHhhhhcccccccC
Q psy2356         267 QNDANPDIP-TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI---SVEESLGAAERSQLKKR  342 (529)
Q Consensus       267 ~~g~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~---~~~~~l~~~~~~~~~~~  342 (529)
                      ..+.+++.. |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||.|+..++.   ..++.+++.....+...
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            346777765 88899999999999999999999999999999999999999999987652   22333333334456677


Q ss_pred             CCCCCcHHHHHHHhCchh----HHHHhhhhh-hHHHHhhcC--CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCc
Q psy2356         343 GREGHTALSIAQKLGYIS----VEESLKGVT-ETLIIAKGD--GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPT  415 (529)
Q Consensus       343 ~~~~~~~l~~a~~~~~~~----~~~~l~~~~-~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  415 (529)
                      +..|+||||.++..+...    ..++..+.. ..+......  ......+.++++.+........+..+.          
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  243 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD----------  243 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS----------
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHh----------
Confidence            888999999888765533    333222211 111111111  122233334444444333333332211          


Q ss_pred             hhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHH
Q psy2356         416 KMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQ  478 (529)
Q Consensus       416 ~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  478 (529)
                          +.+++..  .+|.+|..|+||||+|++.|+.++|++|+++|+++++.|..|.|||+||+
T Consensus       244 ----~~~~~~~--~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         244 ----LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ----HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ----hHHHHhc--CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence                1222222  36889999999999999999999999999999999999999999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.3e-23  Score=169.11  Aligned_cols=149  Identities=28%  Similarity=0.406  Sum_probs=127.2

Q ss_pred             CHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy2356         156 PALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK  235 (529)
Q Consensus       156 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  235 (529)
                      |||+.|++.|+.+++++|+++|++                          ++ .+..|.||||+|+..++.++++.++..
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~--------------------------~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~   56 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAP--------------------------FT-TDWLGTSPLHLAAQYGHFSTTEVLLRA   56 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCC--------------------------CC-CCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC--------------------------cc-cccCCCccccccccccccccccccccc
Confidence            678888888888888888876543                          22 456788999999999999999888888


Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcH
Q psy2356         236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA  315 (529)
Q Consensus       236 g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  315 (529)
                      ..........+.++++.++...+.+.++++...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tp  136 (153)
T d1awcb_          57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCH
Confidence            87777777778888999999999999999998888888888899999999999999999999999999999889999999


Q ss_pred             HHHHHHcCChhHHHHh
Q psy2356         316 LSIAQKLGYISVEESL  331 (529)
Q Consensus       316 l~~a~~~~~~~~~~~l  331 (529)
                      |++|+.+|+.+++++|
T Consensus       137 l~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         137 FDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHhC
Confidence            9999999999988876

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.7e-24  Score=165.33  Aligned_cols=120  Identities=29%  Similarity=0.365  Sum_probs=113.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHcCC
Q psy2356         213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE-TPLHLAARANQ  291 (529)
Q Consensus       213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~-t~l~~a~~~~~  291 (529)
                      +.++||.|+.+|+.+++++|+++|++++..+..|.||++.|+ .|+.+++++|+++|++++..+..+. ||||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            468999999999999999999999999999999999999775 7999999999999999999988876 69999999999


Q ss_pred             HHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356         292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA  333 (529)
Q Consensus       292 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  333 (529)
                      .+++++|+++|++++.+|..|+||+|+|+.+|+.+++++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999964

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.3e-24  Score=165.54  Aligned_cols=118  Identities=23%  Similarity=0.283  Sum_probs=106.7

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356           3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF   82 (529)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~   82 (529)
                      .+.++||.||+.|++++|++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++.++..+.           
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~-----------   69 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATL-----------   69 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTC-----------
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccc-----------
Confidence            5779999999999999999999999999999999999999775 7999999999999999987765433           


Q ss_pred             cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHh
Q psy2356          83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLE  146 (529)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~  146 (529)
                                    .+|||+|+..|+.+++++|++.|.+    +..|.|||++|+..|+.+++++|++
T Consensus        70 --------------~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          70 --------------TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             --------------CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             --------------ccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                          3577788999999999999999766    7889999999999999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=8.8e-23  Score=185.05  Aligned_cols=189  Identities=19%  Similarity=0.203  Sum_probs=126.8

Q ss_pred             HHhCCCCCccc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH-------HHHHHHHHCCC
Q psy2356         232 LLDKRADVNFS-AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT-------DIIRILLRNGA  303 (529)
Q Consensus       232 Ll~~g~~~~~~-~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~-------~~~~~Ll~~g~  303 (529)
                      +...+.+++.. |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||.|+..++.       ++++++.+   
T Consensus        92 ~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---  168 (301)
T d1sw6a_          92 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---  168 (301)
T ss_dssp             CTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---
T ss_pred             CCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---
Confidence            33456677754 78888999999999999999999999999998888899999998876642       34444433   


Q ss_pred             CcccccccCCcHHHHHHHcCCh------------hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhH
Q psy2356         304 QVDARAREGHTALSIAQKLGYI------------SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTET  371 (529)
Q Consensus       304 ~~~~~~~~g~t~l~~a~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~  371 (529)
                      .+...+..|+||+|+++..+..            .++.++..............+.++++.+...........+...   
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  245 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK---  245 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHH---
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhH---
Confidence            4566778888999887754432            2334455555555566666667777776666665555443211   


Q ss_pred             HHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHH
Q psy2356         372 LIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSA  445 (529)
Q Consensus       372 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~  445 (529)
                      .......+.+|..|+||||+|++.|+.+++++|+++                   |+|++.+|..|.|||++|+
T Consensus       246 ~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~-------------------GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-------------------GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-------------------TCCTTCCCTTSCCGGGGTC
T ss_pred             HHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHC-------------------CCCCCCCCCCCCCHHHHcC
Confidence            112334577899999999999999999999998886                   5567888999999999996

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=8e-24  Score=162.02  Aligned_cols=106  Identities=27%  Similarity=0.358  Sum_probs=102.8

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy2356         214 FTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD  293 (529)
Q Consensus       214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  293 (529)
                      .|||.+|++.|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|++.|++++.++..|+||||+|+.+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCcccccccCCcHHHHH
Q psy2356         294 IIRILLRNGAQVDARAREGHTALSIA  319 (529)
Q Consensus       294 ~~~~Ll~~g~~~~~~~~~g~t~l~~a  319 (529)
                      ++++|+++|++++.+|..|.||+++|
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHH
Confidence            99999999999999999999999987

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-22  Score=157.55  Aligned_cols=120  Identities=28%  Similarity=0.326  Sum_probs=110.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy2356         215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI  294 (529)
Q Consensus       215 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  294 (529)
                      ++|+.|+..|+.+++++|+++|++++.++..|+||||+|+..++.+++++|++.|++++..|..|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCcccccc-cCCcHHHHH--HHcCChhHHHHhhhh
Q psy2356         295 IRILLRNGAQVDARAR-EGHTALSIA--QKLGYISVEESLGAA  334 (529)
Q Consensus       295 ~~~Ll~~g~~~~~~~~-~g~t~l~~a--~~~~~~~~~~~l~~~  334 (529)
                      +++|+++|++++..+. .+.|++.++  ...|+.+++++|+..
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999997764 577877665  577889999999653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.1e-23  Score=159.67  Aligned_cols=103  Identities=30%  Similarity=0.496  Sum_probs=93.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccc
Q psy2356           5 HTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLV   84 (529)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~   84 (529)
                      .|||++||+.|++++|++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|+||           
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tp-----------   71 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP-----------   71 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCH-----------
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccc-----------
Confidence            589999999999999999999999999999999999999999999999999999999998877766555           


Q ss_pred             cccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHH
Q psy2356          85 PVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAM  133 (529)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~  133 (529)
                                     ||+|+.+|+.+++++|+++|++    +..|.|||++|.
T Consensus        72 ---------------Lh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          72 ---------------LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             ---------------HHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ---------------hhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence                           5566889999999999999876    778899998873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=157.64  Aligned_cols=116  Identities=26%  Similarity=0.300  Sum_probs=100.0

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccc
Q psy2356           5 HTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLV   84 (529)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~   84 (529)
                      .++|+.||..|++++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||           
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tp-----------   70 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP-----------   70 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH-----------
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCccc-----------
Confidence            578999999999999999999999999999999999999999999999999999999998877665554           


Q ss_pred             cccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC-----CCCCCcHHHHH--HHcCcHHHHHHHHh
Q psy2356          85 PVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR-----GKDGFTPLAVA--MQQGHDKVVAVLLE  146 (529)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~l~~A--~~~~~~~~v~~Ll~  146 (529)
                                     ||+|+.+|+.+++++|+++|++     ...+.++++++  +..|+.+++++|++
T Consensus        71 ---------------Lh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          71 ---------------LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             ---------------HHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             ---------------ccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence                           5566889999999999999866     23467776654  45677888888875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2e-20  Score=149.29  Aligned_cols=125  Identities=26%  Similarity=0.301  Sum_probs=112.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCccc------CCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy2356         216 PLHIASHYGNEGVANILLDKRADVNFS------AKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIPTVRGETPLHLA  286 (529)
Q Consensus       216 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a  286 (529)
                      .|..|++.+++..+..++..|.+++..      +..|+||||+|+..   ++.+++++|+++|++++.++..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            567888999999999999999886644      56789999999975   678999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccc
Q psy2356         287 ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK  340 (529)
Q Consensus       287 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~  340 (529)
                      ++.|+.+++++|+++|++++.+|..|.||+|+|+..|+.+++++|++......+
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999999999999999999999999776544333

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.2e-19  Score=143.18  Aligned_cols=128  Identities=20%  Similarity=0.219  Sum_probs=110.2

Q ss_pred             HHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHc---CCHHHHHHHH
Q psy2356         157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHY---GNEGVANILL  233 (529)
Q Consensus       157 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~v~~Ll  233 (529)
                      .|..|++.++...+..++..|.+.....                    .....+..|.||||+|+..   +..+++++|+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~--------------------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll   68 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKI--------------------PLANGHEPDETALHLAVRSVDRTSLHIVDFLV   68 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBC--------------------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCC--------------------CcccCCCCCCchHHHHHHhcCCCCHHHHHHHH
Confidence            4667888888888888887776544321                    1223455789999999975   6789999999


Q ss_pred             hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy2356         234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ  304 (529)
Q Consensus       234 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  304 (529)
                      ++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|++.+..
T Consensus        69 ~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          69 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999996543