Psyllid ID: psy238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccccEEEEEEEEcccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccEEEcccHHHHHHHcccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEEEHHHcccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEEEHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEEEcccEEEEcHHHHHHHHHHHccccccHHHcccHHHccHHHHHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLtqlehpnivkFHRYwtdthndkpRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSylhscsppiihgnltcdtiFIQHNGLVKIGCDTYTHTIENKKYLSATRqtygrpisgqYEIVTKTnnvtekkkeKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN
Flexible Loop (DISEMBL)
mdteegvevvwnevqfserknfKAQEEKIQQVFEnltqlehpniVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKkylsatrqtygrpisgqyeivtktnnvtekkkekeeeeeeekkkkkkeeeekkkekekekkkkkkkimrkeen
Low Complexity Region (SEG)
MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTekkkekeeeeeeekkkkkkeeeekkkekekekkkkkkkIMRKEEN
Disordered region (IsUnstruct)
*******EVVWNEVQFSE***F****EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVT***************************************************
Disordered Region (DISOPRED)
MDTEEGVEVVWNEVQFS**************VFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVTK**************************************************
Disordered Region (DISEMBL)
MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNV**********************************************
Disordered Region (DISPRO)
*DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q9Y0Y6	637	Nuclear receptor-binding	yes	N/A	0.614	0.210	0.8	2e-65
Q5RBH9	535	Nuclear receptor-binding	yes	N/A	0.655	0.267	0.770	1e-62
Q99J45	535	Nuclear receptor-binding	yes	N/A	0.655	0.267	0.770	1e-62
Q4R8X0	535	Nuclear receptor-binding	N/A	N/A	0.655	0.267	0.770	1e-62
Q9UHY1	535	Nuclear receptor-binding	yes	N/A	0.655	0.267	0.770	1e-62
Q297L2	663	Nuclear receptor-binding	yes	N/A	0.614	0.202	0.8	3e-61
Q9NSY0	501	Nuclear receptor-binding	no	N/A	0.614	0.267	0.738	7e-57
Q91V36	499	Nuclear receptor-binding	no	N/A	0.633	0.276	0.710	8e-57
Q80XP9	1757	Serine/threonine-protein	no	N/A	0.587	0.072	0.451	5e-25
Q9Y3S1	2297	Serine/threonine-protein	no	N/A	0.587	0.055	0.437	9e-25

>sp|Q9Y0Y6|NRBP_DROME Nuclear receptor-binding protein homolog OS=Drosophila melanogaster GN=Madm PE=1 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 108/135 (80%), Positives = 124/135 (91%), Gaps = 1/135 (0%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKP 59
           MDTEEGVEVVWNEVQ++  +  K+QEEK++QVF+NL QL+H NIVKFHRYWTDT   ++P
Sbjct: 127 MDTEEGVEVVWNEVQYASLQELKSQEEKMRQVFDNLLQLDHQNIVKFHRYWTDTQQAERP 186

Query: 60  RVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLT 119
           RV+FITEYMSSGSLKQFLKRTKRN K+LPL +W+RWC+QILSALSYLHSCSPPIIHGNLT
Sbjct: 187 RVVFITEYMSSGSLKQFLKRTKRNAKRLPLESWRRWCTQILSALSYLHSCSPPIIHGNLT 246

Query: 120 CDTIFIQHNGLVKIG 134
           CD+IFIQHNGLVKIG
Sbjct: 247 CDSIFIQHNGLVKIG 261

May play a role in subcellular trafficking between the endoplasmic reticulum and Golgi apparatus.
Drosophila melanogaster (taxid: 7227)

>sp|Q5RBH9|NRBP_PONAB Nuclear receptor-binding protein OS=Pongo abelii GN=NRBP1 PE=2 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/144 (77%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct: 86  MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIKENKAR 145

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct: 146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query: 121 DTIFIQHNGLVKIGCDTYTHTIEN 144
           DTIFIQHNGL+KIG      TI N
Sbjct: 206 DTIFIQHNGLIKIG-SVAPDTINN 228

May play a role in subcellular trafficking between the endoplasmic reticulum and Golgi apparatus through interactions with the Rho-type GTPases.

Pongo abelii (taxid: 9601)

>sp|Q99J45|NRBP_MOUSE Nuclear receptor-binding protein OS=Mus musculus GN=Nrbp1 PE=1 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/144 (77%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct: 86  MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADVKENKAR 145

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct: 146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query: 121 DTIFIQHNGLVKIGCDTYTHTIEN 144
           DTIFIQHNGL+KIG      TI N
Sbjct: 206 DTIFIQHNGLIKIG-SVAPDTINN 228

May play a role in subcellular trafficking between the endoplasmic reticulum and Golgi apparatus through interactions with the Rho-type GTPases.

Mus musculus (taxid: 10090)

>sp|Q4R8X0|NRBP_MACFA Nuclear receptor-binding protein OS=Macaca fascicularis GN=NRBP1 PE=2 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/144 (77%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct: 86  MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIKENKAR 145

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct: 146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query: 121 DTIFIQHNGLVKIGCDTYTHTIEN 144
           DTIFIQHNGL+KIG      TI N
Sbjct: 206 DTIFIQHNGLIKIG-SVAPDTINN 228

May play a role in subcellular trafficking between the endoplasmic reticulum and Golgi apparatus through interactions with the Rho-type GTPases.

Macaca fascicularis (taxid: 9541)

>sp|Q9UHY1|NRBP_HUMAN Nuclear receptor-binding protein OS=Homo sapiens GN=NRBP1 PE=1 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/144 (77%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct: 86  MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIKENKAR 145

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct: 146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query: 121 DTIFIQHNGLVKIGCDTYTHTIEN 144
           DTIFIQHNGL+KIG      TI N
Sbjct: 206 DTIFIQHNGLIKIG-SVAPDTINN 228

May play a role in subcellular trafficking between the endoplasmic reticulum and Golgi apparatus through interactions with the Rho-type GTPases. Binding to the NS3 protein of dengue virus type 2 appears to subvert this activity into the alteration of the intracellular membrane structure associated with flaviviral replication.

Homo sapiens (taxid: 9606)

>sp|Q297L2|NRBP_DROPS Nuclear receptor-binding protein homolog OS=Drosophila pseudoobscura pseudoobscura GN=Madm PE=3 SV=2

 Score =  234 bits (598), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 108/135 (80%), Positives = 124/135 (91%), Gaps = 1/135 (0%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKP 59
           MDTEEGVEVVWNEVQ++  +  K+QEEK++QVF+NL QL+H NIVKFHRYWTDT   ++P
Sbjct: 140 MDTEEGVEVVWNEVQYANMQELKSQEEKMRQVFDNLLQLDHQNIVKFHRYWTDTQQAERP 199

Query: 60  RVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLT 119
           RVIFITEYMSSGSLKQFLKRTKRN K+LPL +W+RWC+QILSALSYLHSC+PPIIHGNLT
Sbjct: 200 RVIFITEYMSSGSLKQFLKRTKRNAKRLPLESWRRWCTQILSALSYLHSCTPPIIHGNLT 259

Query: 120 CDTIFIQHNGLVKIG 134
           CD+IFIQHNGLVKIG
Sbjct: 260 CDSIFIQHNGLVKIG 274

May play a role in subcellular trafficking between the endoplasmic reticulum and Golgi apparatus.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9NSY0|NRBP2_HUMAN Nuclear receptor-binding protein 2 OS=Homo sapiens GN=NRBP2 PE=1 SV=2

 Score =  220 bits (560), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 99/134 (73%), Positives = 112/134 (83%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNE+ F +RK F A EEKIQ VFE L  ++HPNIVK H+YW DT     R
Sbjct: 59  MDTEEGVEVVWNELHFGDRKAFAAHEEKIQTVFEQLVLVDHPNIVKLHKYWLDTSEACAR 118

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEY+SSGSLKQFLK+TK+N K +   AWKRWC+QILSALS+LH+CSPPIIHGNLT 
Sbjct: 119 VIFITEYVSSGSLKQFLKKTKKNHKAMNARAWKRWCTQILSALSFLHACSPPIIHGNLTS 178

Query: 121 DTIFIQHNGLVKIG 134
           DTIFIQHNGL+KIG
Sbjct: 179 DTIFIQHNGLIKIG 192

May regulate apoptosis of neural progenitor cells during their differentiation.

Homo sapiens (taxid: 9606)

>sp|Q91V36|NRBP2_MOUSE Nuclear receptor-binding protein 2 OS=Mus musculus GN=Nrbp2 PE=1 SV=2

 Score =  219 bits (559), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 98/138 (71%), Positives = 113/138 (81%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNE+ F +RK F A EEKIQ +FE L  ++HPNIVK H+YW D    + R
Sbjct: 57  MDTEEGVEVVWNELHFGDRKAFAAHEEKIQTMFEQLALVDHPNIVKLHKYWLDASEARAR 116

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEY+SSGSLKQFLK+TK+N K +   AWKRWC+QILSALS+LH+CSPPIIHGNLT 
Sbjct: 117 VIFITEYVSSGSLKQFLKKTKKNHKAMNARAWKRWCTQILSALSFLHACSPPIIHGNLTS 176

Query: 121 DTIFIQHNGLVKIGCDTY 138
           DTIFIQHNGL+KIG   Y
Sbjct: 177 DTIFIQHNGLIKIGSVWY 194

May regulate apoptosis of neural progenitor cells during their differentiation.

Mus musculus (taxid: 10090)

>sp|Q80XP9|WNK3_MOUSE Serine/threonine-protein kinase WNK3 OS=Mus musculus GN=Wnk3 PE=2 SV=3

 Score =  114 bits (285), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 7/135 (5%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           +DTE  VEV W E+Q  +RK  KA++++ ++  E L  L+HPNIV+F+  W  T   K  
Sbjct: 164 LDTETWVEVAWCELQ--DRKLTKAEQQRFKEEAEMLKGLQHPNIVRFYDSWESTLKGKKC 221

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           ++ +TE M+SG+LK +LKR K    K+     + WC QIL  L +LH+ +PPIIH +L C
Sbjct: 222 IVLVTELMTSGTLKTYLKRFKVMKPKV----LRSWCRQILKGLQFLHTRTPPIIHRDLKC 277

Query: 121 DTIFIQH-NGLVKIG 134
           D IFI    G VKIG
Sbjct: 278 DNIFITGPTGSVKIG 292

Serine/threonine kinase which plays an important role in the regulation of electrolyte homeostasis, cell signaling, survival and proliferation. Acts as an activator and inhibitor of sodium-coupled chloride cotransporters and potassium-coupled chloride cotransporters respectively. Activates SLC12A1, SLC12A2, SLC12A3, SCNN1A, SCNN1B, SCNN1D and SGK1. Inhibits SLC12A4, SLC12A5, SLC12A6 and SLC12A7. Phosphorylates WNK4. Increases Ca(2+) influx mediated by TRPV5 and TRPV6 by enhancing their membrane expression level via a kinase-dependent pathway. Inhibits KCNJ1 by decreasing its expression at the cell membrane in a non-catalytic manner.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9Y3S1|WNK2_HUMAN Serine/threonine-protein kinase WNK2 OS=Homo sapiens GN=WNK2 PE=1 SV=4

 Score =  113 bits (283), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 7/135 (5%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           +DTE  VEV W E+Q  +RK  K + ++ ++  E L  L+HPNIV+F+ +W  +   K  
Sbjct: 213 LDTETWVEVAWCELQ--DRKLTKLERQRFKEEAEMLKGLQHPNIVRFYDFWESSAKGKRC 270

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           ++ +TE M+SG+LK +LKR K    K+     + WC QIL  L +LH+ +PPIIH +L C
Sbjct: 271 IVLVTELMTSGTLKTYLKRFKVMKPKV----LRSWCRQILKGLLFLHTRTPPIIHRDLKC 326

Query: 121 DTIFIQH-NGLVKIG 134
           D IFI    G VKIG
Sbjct: 327 DNIFITGPTGSVKIG 341

Serine/threonine kinase which plays an important role in the regulation of electrolyte homeostasis, cell signaling, survival, and proliferation. Acts as an activator and inhibitor of sodium-coupled chloride cotransporters and potassium-coupled chloride cotransporters respectively. Activates SLC12A2, SCNN1A, SCNN1B, SCNN1D and SGK1 and inhibits SLC12A5. Negatively regulates the EGF-induced activation of the ERK/MAPK-pathway and the downstream cell cycle progression. Affects MAPK3/MAPK1 activity by modulating the activity of MAP2K1 and this modulation depends on phosphorylation of MAP2K1 by PAK1. WNK2 acts by interfering with the activity of PAK1 by controlling the balance of the activity of upstream regulators of PAK1 activity, RHOA and RAC1, which display reciprocal activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
345485500	601	PREDICTED: nuclear receptor-binding prot	0.756	0.274	0.813	5e-77
242002982	476	predicted protein [Pediculus humanus cor	0.614	0.281	0.992	9e-77
322786209	527	hypothetical protein SINV_13578 [Solenop	0.756	0.313	0.808	1e-76
307202843	575	Nuclear receptor-binding protein [Harpeg	0.756	0.286	0.802	1e-76
307190392	603	Nuclear receptor-binding protein [Campon	0.756	0.273	0.808	1e-76
380015726	603	PREDICTED: nuclear receptor-binding prot	0.756	0.273	0.802	1e-76
340721230	603	PREDICTED: nuclear receptor-binding prot	0.756	0.273	0.802	1e-76
328787071	572	PREDICTED: nuclear receptor-binding prot	0.756	0.288	0.802	1e-76
383848666	602	PREDICTED: nuclear receptor-binding prot	0.756	0.274	0.802	2e-76
350406846	572	PREDICTED: nuclear receptor-binding prot	0.756	0.288	0.802	2e-76

>gi|345485500|ref|XP_003425283.1| PREDICTED: nuclear receptor-binding protein homolog isoform 2 [Nasonia vitripennis] gi|345485502|ref|XP_001606681.2| PREDICTED: nuclear receptor-binding protein homolog isoform 1 [Nasonia vitripennis] gi|345485504|ref|XP_003425284.1| PREDICTED: nuclear receptor-binding protein homolog isoform 3 [Nasonia vitripennis]

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 140/172 (81%), Positives = 144/172 (83%), Gaps = 7/172 (4%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQ VFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 88  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQLVFENLTQLEHPNIVKFHRYWTDTHNDKPR 147

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPL AWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 148 VIFITEYMSSGSLKQFLKRTKRNVKKLPLQAWKRWCTQILSALSYLHSCSPPIIHGNLTC 207

Query: 121 DTIFIQHNGLVKIGC---DTYTHTI----ENKKYLSATRQTYGRPISGQYEI 165
           DTIFIQHNGLVKIG    D   H I    EN K +      YG   +   +I
Sbjct: 208 DTIFIQHNGLVKIGSVAPDAIHHHIKTHRENMKNMHFVAPEYGNSATPAIDI 259

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242002982|ref|XP_002422565.1| predicted protein [Pediculus humanus corporis] gi|212505355|gb|EEB09827.1| predicted protein [Pediculus humanus corporis]

 Score =  291 bits (746), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 133/134 (99%), Positives = 134/134 (100%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 20  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 79

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 80  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCTQILSALSYLHSCSPPIIHGNLTC 139

Query: 121 DTIFIQHNGLVKIG 134
           DTIFIQHNGLVKIG
Sbjct: 140 DTIFIQHNGLVKIG 153

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786209|gb|EFZ12814.1| hypothetical protein SINV_13578 [Solenopsis invicta]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/172 (80%), Positives = 145/172 (84%), Gaps = 7/172 (4%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQ VFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 16  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQLVFENLTQLEHPNIVKFHRYWTDTHNDKPR 75

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPL AWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 76  VIFITEYMSSGSLKQFLKRTKRNVKKLPLQAWKRWCTQILSALSYLHSCSPPIIHGNLTC 135

Query: 121 DTIFIQHNGLVKIGC---DTYTHTIE----NKKYLSATRQTYGRPISGQYEI 165
           DTIFIQHNGLVKIG    D   H I+    N K +      YG  ++   +I
Sbjct: 136 DTIFIQHNGLVKIGSVAPDAIHHHIKTCRTNMKNMHFVAPEYGNSVTPAIDI 187

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202843|gb|EFN82103.1| Nuclear receptor-binding protein [Harpegnathos saltator]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 144/172 (83%), Gaps = 7/172 (4%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQ VFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 59  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQLVFENLTQLEHPNIVKFHRYWTDTHNDKPR 118

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPL AWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 119 VIFITEYMSSGSLKQFLKRTKRNVKKLPLQAWKRWCTQILSALSYLHSCSPPIIHGNLTC 178

Query: 121 DTIFIQHNGLVKIGC---DTYTHTI----ENKKYLSATRQTYGRPISGQYEI 165
           DTIFIQHNGLVKIG    D   H +     N K +      YG  ++   +I
Sbjct: 179 DTIFIQHNGLVKIGSVAPDAIHHHVKTCRANMKNMHFVAPEYGNSVTPAIDI 230

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190392|gb|EFN74451.1| Nuclear receptor-binding protein [Camponotus floridanus]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/172 (80%), Positives = 145/172 (84%), Gaps = 7/172 (4%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQ VFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 88  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQLVFENLTQLEHPNIVKFHRYWTDTHNDKPR 147

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPL AWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 148 VIFITEYMSSGSLKQFLKRTKRNVKKLPLQAWKRWCTQILSALSYLHSCSPPIIHGNLTC 207

Query: 121 DTIFIQHNGLVKIGC---DTYTHTIE----NKKYLSATRQTYGRPISGQYEI 165
           DTIFIQHNGLVKIG    D   H I+    N K +      YG  ++   +I
Sbjct: 208 DTIFIQHNGLVKIGSVAPDAIHHHIKTCRTNMKNIHFVAPEYGNSVTPAIDI 259

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015726|ref|XP_003691847.1| PREDICTED: nuclear receptor-binding protein homolog [Apis florea]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 144/172 (83%), Gaps = 7/172 (4%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQ VFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 88  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQLVFENLTQLEHPNIVKFHRYWTDTHNDKPR 147

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPL AWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 148 VIFITEYMSSGSLKQFLKRTKRNVKKLPLQAWKRWCTQILSALSYLHSCSPPIIHGNLTC 207

Query: 121 DTIFIQHNGLVKIGC---DTYTHTI----ENKKYLSATRQTYGRPISGQYEI 165
           DTIFIQHNGLVKIG    D   H +     N K +      YG  ++   +I
Sbjct: 208 DTIFIQHNGLVKIGSVAPDAIHHHVKTCRANMKNMHFVAPEYGNSVTPAIDI 259

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721230|ref|XP_003399027.1| PREDICTED: nuclear receptor-binding protein homolog [Bombus terrestris]

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 144/172 (83%), Gaps = 7/172 (4%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQ VFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 88  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQLVFENLTQLEHPNIVKFHRYWTDTHNDKPR 147

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPL AWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 148 VIFITEYMSSGSLKQFLKRTKRNVKKLPLQAWKRWCTQILSALSYLHSCSPPIIHGNLTC 207

Query: 121 DTIFIQHNGLVKIGC---DTYTHTI----ENKKYLSATRQTYGRPISGQYEI 165
           DTIFIQHNGLVKIG    D   H +     N K +      YG  ++   +I
Sbjct: 208 DTIFIQHNGLVKIGSVAPDAIHHHVKTCRANMKNMHFVAPEYGNSVTPAIDI 259

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787071|ref|XP_623819.2| PREDICTED: nuclear receptor-binding protein homolog [Apis mellifera]

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 144/172 (83%), Gaps = 7/172 (4%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQ VFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 88  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQLVFENLTQLEHPNIVKFHRYWTDTHNDKPR 147

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPL AWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 148 VIFITEYMSSGSLKQFLKRTKRNVKKLPLQAWKRWCTQILSALSYLHSCSPPIIHGNLTC 207

Query: 121 DTIFIQHNGLVKIGC---DTYTHTI----ENKKYLSATRQTYGRPISGQYEI 165
           DTIFIQHNGLVKIG    D   H +     N K +      YG  ++   +I
Sbjct: 208 DTIFIQHNGLVKIGSVAPDAIHHHVKTCRANMKNMHFVAPEYGNSVTPAIDI 259

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848666|ref|XP_003699969.1| PREDICTED: nuclear receptor-binding protein homolog [Megachile rotundata]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 145/172 (84%), Gaps = 7/172 (4%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQ VFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 88  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQLVFENLTQLEHPNIVKFHRYWTDTHNDKPR 147

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPL AWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 148 VIFITEYMSSGSLKQFLKRTKRNVKKLPLQAWKRWCTQILSALSYLHSCSPPIIHGNLTC 207

Query: 121 DTIFIQHNGLVKIGC---DTYTHTIE----NKKYLSATRQTYGRPISGQYEI 165
           DTIFIQHNGLVKIG    D   H ++    N K +      YG  ++   +I
Sbjct: 208 DTIFIQHNGLVKIGSVAPDAIHHHVKTCRTNMKNMHFVAPEYGNSVTPAIDI 259

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406846|ref|XP_003487903.1| PREDICTED: nuclear receptor-binding protein homolog [Bombus impatiens]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 144/172 (83%), Gaps = 7/172 (4%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MDTEEGVEVVWNEVQFSERKNFKAQEEKIQ VFENLTQLEHPNIVKFHRYWTDTHNDKPR
Sbjct: 88  MDTEEGVEVVWNEVQFSERKNFKAQEEKIQLVFENLTQLEHPNIVKFHRYWTDTHNDKPR 147

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           VIFITEYMSSGSLKQFLKRTKRNVKKLPL AWKRWC+QILSALSYLHSCSPPIIHGNLTC
Sbjct: 148 VIFITEYMSSGSLKQFLKRTKRNVKKLPLQAWKRWCTQILSALSYLHSCSPPIIHGNLTC 207

Query: 121 DTIFIQHNGLVKIGC---DTYTHTI----ENKKYLSATRQTYGRPISGQYEI 165
           DTIFIQHNGLVKIG    D   H +     N K +      YG  ++   +I
Sbjct: 208 DTIFIQHNGLVKIGSVAPDAIHHHVKTCRANMKNMHFVAPEYGNSVTPAIDI 259

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
FB|FBgn0027497	637	Madm "MLF1-adaptor molecule" [	0.614	0.210	0.8	1.2e-58
UNIPROTKB|Q297L2	663	Madm "Nuclear receptor-binding	0.614	0.202	0.8	1.5e-58
UNIPROTKB|I3LA44	483	NRBP1 "Uncharacterized protein	0.655	0.296	0.770	6.6e-58
MGI|MGI:2183436	535	Nrbp1 "nuclear receptor bindin	0.655	0.267	0.770	6.6e-58
UNIPROTKB|Q08DY5	535	NRBP1 "Nuclear receptor bindin	0.655	0.267	0.770	8.4e-58
UNIPROTKB|E2REI7	541	NRBP1 "Uncharacterized protein	0.655	0.264	0.770	8.4e-58
UNIPROTKB|Q9UHY1	535	NRBP1 "Nuclear receptor-bindin	0.655	0.267	0.770	8.4e-58
UNIPROTKB|Q4R8X0	535	NRBP1 "Nuclear receptor-bindin	0.655	0.267	0.770	8.4e-58
UNIPROTKB|Q5RBH9	535	NRBP1 "Nuclear receptor-bindin	0.655	0.267	0.770	8.4e-58
UNIPROTKB|F8W6G1	543	NRBP1 "Nuclear receptor-bindin	0.614	0.246	0.805	1.4e-57

FB|FBgn0027497 Madm "MLF1-adaptor molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 108/135 (80%), Positives = 124/135 (91%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKP 59
             MDTEEGVEVVWNEVQ++  +  K+QEEK++QVF+NL QL+H NIVKFHRYWTDT   ++P
Sbjct:   127 MDTEEGVEVVWNEVQYASLQELKSQEEKMRQVFDNLLQLDHQNIVKFHRYWTDTQQAERP 186

Query:    60 RVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLT 119
             RV+FITEYMSSGSLKQFLKRTKRN K+LPL +W+RWC+QILSALSYLHSCSPPIIHGNLT
Sbjct:   187 RVVFITEYMSSGSLKQFLKRTKRNAKRLPLESWRRWCTQILSALSYLHSCSPPIIHGNLT 246

Query:   120 CDTIFIQHNGLVKIG 134
             CD+IFIQHNGLVKIG
Sbjct:   247 CDSIFIQHNGLVKIG 261

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IKR

GO:0006468 "protein phosphorylation" evidence=IKR

GO:0042127 "regulation of cell proliferation" evidence=IDA

GO:0008361 "regulation of cell size" evidence=IDA

UNIPROTKB|Q297L2 Madm "Nuclear receptor-binding protein homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 108/135 (80%), Positives = 124/135 (91%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKP 59
             MDTEEGVEVVWNEVQ++  +  K+QEEK++QVF+NL QL+H NIVKFHRYWTDT   ++P
Sbjct:   140 MDTEEGVEVVWNEVQYANMQELKSQEEKMRQVFDNLLQLDHQNIVKFHRYWTDTQQAERP 199

Query:    60 RVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLT 119
             RVIFITEYMSSGSLKQFLKRTKRN K+LPL +W+RWC+QILSALSYLHSC+PPIIHGNLT
Sbjct:   200 RVIFITEYMSSGSLKQFLKRTKRNAKRLPLESWRRWCTQILSALSYLHSCTPPIIHGNLT 259

Query:   120 CDTIFIQHNGLVKIG 134
             CD+IFIQHNGLVKIG
Sbjct:   260 CDSIFIQHNGLVKIG 274

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

UNIPROTKB|I3LA44 NRBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 111/144 (77%), Positives = 122/144 (84%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
             MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct:    86 MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADVKENKAR 145

Query:    61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
             VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct:   146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query:   121 DTIFIQHNGLVKIGCDTYTHTIEN 144
             DTIFIQHNGL+KIG      TI N
Sbjct:   206 DTIFIQHNGLIKIG-SVAPDTINN 228

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

MGI|MGI:2183436 Nrbp1 "nuclear receptor binding protein 1" [Mus musculus (taxid:10090)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 111/144 (77%), Positives = 122/144 (84%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
             MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct:    86 MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADVKENKAR 145

Query:    61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
             VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct:   146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query:   121 DTIFIQHNGLVKIGCDTYTHTIEN 144
             DTIFIQHNGL+KIG      TI N
Sbjct:   206 DTIFIQHNGLIKIG-SVAPDTINN 228

GO:0004672 "protein kinase activity" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007254 "JNK cascade" evidence=ISO

GO:0012505 "endomembrane system" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0042802 "identical protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|Q08DY5 NRBP1 "Nuclear receptor binding protein 1" [Bos taurus (taxid:9913)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 111/144 (77%), Positives = 122/144 (84%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
             MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct:    86 MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIKENKAR 145

Query:    61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
             VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct:   146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query:   121 DTIFIQHNGLVKIGCDTYTHTIEN 144
             DTIFIQHNGL+KIG      TI N
Sbjct:   206 DTIFIQHNGLIKIG-SVAPDTINN 228

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|E2REI7 NRBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 111/144 (77%), Positives = 122/144 (84%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
             MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct:   127 MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIKENKAR 186

Query:    61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
             VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct:   187 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 246

Query:   121 DTIFIQHNGLVKIGCDTYTHTIEN 144
             DTIFIQHNGL+KIG      TI N
Sbjct:   247 DTIFIQHNGLIKIG-SVAPDTINN 269

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|Q9UHY1 NRBP1 "Nuclear receptor-binding protein" [Homo sapiens (taxid:9606)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 111/144 (77%), Positives = 122/144 (84%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
             MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct:    86 MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIKENKAR 145

Query:    61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
             VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct:   146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query:   121 DTIFIQHNGLVKIGCDTYTHTIEN 144
             DTIFIQHNGL+KIG      TI N
Sbjct:   206 DTIFIQHNGLIKIG-SVAPDTINN 228

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q4R8X0 NRBP1 "Nuclear receptor-binding protein" [Macaca fascicularis (taxid:9541)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 111/144 (77%), Positives = 122/144 (84%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
             MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct:    86 MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIKENKAR 145

Query:    61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
             VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct:   146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query:   121 DTIFIQHNGLVKIGCDTYTHTIEN 144
             DTIFIQHNGL+KIG      TI N
Sbjct:   206 DTIFIQHNGLIKIG-SVAPDTINN 228

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

UNIPROTKB|Q5RBH9 NRBP1 "Nuclear receptor-binding protein" [Pongo abelii (taxid:9601)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 111/144 (77%), Positives = 122/144 (84%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
             MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct:    86 MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIKENKAR 145

Query:    61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
             VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct:   146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query:   121 DTIFIQHNGLVKIGCDTYTHTIEN 144
             DTIFIQHNGL+KIG      TI N
Sbjct:   206 DTIFIQHNGLIKIG-SVAPDTINN 228

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

UNIPROTKB|F8W6G1 NRBP1 "Nuclear receptor-binding protein" [Homo sapiens (taxid:9606)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 108/134 (80%), Positives = 119/134 (88%)

Query:     1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
             MDTEEGVEVVWNEVQFSERKN+K QEEK++ VF+NL QLEH NIVKFH+YW D   +K R
Sbjct:    86 MDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADIKENKAR 145

Query:    61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
             VIFITEYMSSGSLKQFLK+TK+N K +   AWKRWC+QILSALSYLHSC PPIIHGNLTC
Sbjct:   146 VIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTC 205

Query:   121 DTIFIQHNGLVKIG 134
             DTIFIQHNGL+KIG
Sbjct:   206 DTIFIQHNGLIKIG 219

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UHY1	NRBP_HUMAN	No assigned EC number	0.7708	0.6559	0.2672	yes	N/A
Q9Y0Y6	NRBP_DROME	No assigned EC number	0.8	0.6146	0.2103	yes	N/A
Q5RBH9	NRBP_PONAB	No assigned EC number	0.7708	0.6559	0.2672	yes	N/A
Q297L2	NRBP_DROPS	No assigned EC number	0.8	0.6146	0.2021	yes	N/A
Q99J45	NRBP_MOUSE	No assigned EC number	0.7708	0.6559	0.2672	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-23
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-19
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-17
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-16
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-15
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-15
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	3e-15
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-15
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-14
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	8e-14
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	6e-13
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	7e-13
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	4e-11
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	9e-11
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-10
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	4e-10
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-10
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	5e-10
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	8e-10
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	3e-09
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	5e-09
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-09
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-08
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	4e-08
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	5e-08
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	5e-08
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	7e-08
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-07
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-07
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-07
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-07
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	3e-07
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	4e-07
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	7e-07
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	9e-07
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	9e-07
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-06
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-06
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	1e-06
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-06
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	2e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-06
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	3e-06
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-06
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	3e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-06
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-06
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	8e-06
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	9e-06
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-05
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-05
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-05
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	1e-05
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	1e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-05
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	2e-05
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	2e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	2e-05
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-05
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	3e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	3e-05
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	4e-05
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	4e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	4e-05
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	6e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	7e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	7e-05
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	9e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	9e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	1e-04
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	1e-04
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	1e-04
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-04
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	2e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	2e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-04
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	2e-04
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	2e-04
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	2e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-04
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	3e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	3e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	3e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	4e-04
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	4e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	5e-04
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	5e-04
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	6e-04
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	6e-04
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	6e-04
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	6e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	7e-04
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	7e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	8e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	9e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.001
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.001
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	0.001
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.001
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	0.001
PRK00448	1437	PRK00448, polC, DNA polymerase III PolC; Validated	0.001
pfam08229	196	pfam08229, SHR3_chaperone, ER membrane protein SH3	0.001
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	0.001
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	0.001
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	0.001
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	0.001
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	0.001
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	0.001
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.002
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.002
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	0.002
cd05076	274	cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) do	0.002
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	0.002
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	0.002
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.002
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	0.002
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.002
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.003
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.003
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.003
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.003
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	0.003
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	0.003
PLN02381	1066	PLN02381, PLN02381, valyl-tRNA synthetase	0.003
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.003
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	0.003
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.004
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	0.004
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	0.004
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.004
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	0.004
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	0.004
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 93.5 bits (233), Expect = 1e-23
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 13/135 (9%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
            D + G +V    ++  +  +     E++ +  E L +L HPNIVK +  + D    +  
Sbjct: 13  RDKKTGKKVAIKIIKKEDSSSLL---EELLREIEILKKLNHPNIVKLYGVFED----ENH 65

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           +  + EY   GSLK  LK    N  KL      R   QIL  L YLHS    IIH +L  
Sbjct: 66  LYLVMEYCEGGSLKDLLKE---NEGKLSEDEILRILLQILEGLEYLHSN--GIIHRDLKP 120

Query: 121 DTIFIQH-NGLVKIG 134
           + I +   NG VK+ 
Sbjct: 121 ENILLDSDNGKVKLA 135

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 13/157 (8%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           +D + G  +    V+ S   + + + E +++    L+ L+HPNIV++  Y ++   +K  
Sbjct: 20  LDKDTGELMAVKSVELSG--DSEEELEALEREIRILSSLQHPNIVRY--YGSERDEEKNT 75

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           +    EY+S GSL   LK+      KLP    +++  QIL  L+YLHS    I+H ++  
Sbjct: 76  LNIFLEYVSGGSLSSLLKK----FGKLPEPVIRKYTRQILEGLAYLHSNG--IVHRDIKG 129

Query: 121 DTIFIQHNGLVKI---GCDTYTHTIENKKYLSATRQT 154
             I +  +G+VK+   GC      IE  +   + R T
Sbjct: 130 ANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGT 166

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 10/116 (8%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
           +K  K   E+I +  + L +L+HPNIV+ +    D   D+ ++  + EY   G L   LK
Sbjct: 34  KKKIKKDRERILREIKILKKLKHPNIVRLY----DVFEDEDKLYLVMEYCEGGDLFDLLK 89

Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
           +  R    L     + +  QILSAL YLHS    I+H +L  + I +  +G VK+ 
Sbjct: 90  KRGR----LSEDEARFYLRQILSALEYLHSKG--IVHRDLKPENILLDEDGHVKLA 139

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 73.7 bits (182), Expect = 6e-16
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 34  ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWK 93
             + +L HPNIV+     T     +P +  +TEYM  G L  FL++      KL L    
Sbjct: 53  SIMKKLSHPNIVRLLGVCTQ---GEP-LYIVTEYMPGGDLLDFLRKHGE---KLTLKDLL 105

Query: 94  RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
           +   QI   + YL S     +H +L      +  N +VKI 
Sbjct: 106 QMALQIAKGMEYLESK--NFVHRDLAARNCLVTENLVVKIS 144

Length = 258

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 8/133 (6%)

Query: 2   DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRV 61
              +G   V  E+  S   + K +E+ + +V + L +L HPNI+K++    ++  +K ++
Sbjct: 21  RKSDGKLYVLKEIDLSNM-SEKEREDALNEV-KILKKLNHPNIIKYY----ESFEEKGKL 74

Query: 62  IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCD 121
             + EY   G L Q +K+ K+  K  P      W  Q+  AL YLHS    I+H ++   
Sbjct: 75  CIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK--ILHRDIKPQ 132

Query: 122 TIFIQHNGLVKIG 134
            IF+  NGLVK+G
Sbjct: 133 NIFLTSNGLVKLG 145

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 25  QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
           Q E+  +    + +L+HPN+VK     T+   ++P  I + EYM  G L  +L++ +   
Sbjct: 44  QIEEFLREARIMRKLDHPNVVKLLGVCTE---EEPLYI-VMEYMEGGDLLSYLRKNR--- 96

Query: 85  KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            KL LS    +  QI   + YL S     IH +L      +  N +VKI 
Sbjct: 97  PKLSLSDLLSFALQIARGMEYLESK--NFIHRDLAARNCLVGENLVVKIS 144

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 14/120 (11%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
           Q ++ K  K   +++    + L  L+HPN+VK+  Y  + H +K  V    EY S G+L+
Sbjct: 36  QDNDPKTIKEIADEM----KVLELLKHPNLVKY--YGVEVHREK--VYIFMEYCSGGTLE 87

Query: 75  QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
           + L     + + L     + +  Q+L  L+YLHS    I+H ++    IF+ HNG++K+G
Sbjct: 88  ELL----EHGRILDEHVIRVYTLQLLEGLAYLHSHG--IVHRDIKPANIFLDHNGVIKLG 141

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 71.8 bits (177), Expect = 3e-15
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 24  AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN 83
            Q E+  +    + +L+HPNIVK     T+   ++P +I + EYM  G L  +L++ +  
Sbjct: 43  QQIEEFLREARIMRKLDHPNIVKLLGVCTE---EEPLMI-VMEYMPGGDLLDYLRKNRPK 98

Query: 84  VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
              L LS    +  QI   + YL S     IH +L      +  N +VKI 
Sbjct: 99  E--LSLSDLLSFALQIARGMEYLESK--NFIHRDLAARNCLVGENLVVKIS 145

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 21/132 (15%)

Query: 7   VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITE 66
           V+++    + S++     +E +I      L +L HPNIV+    + D    K  +  + E
Sbjct: 29  VKILKKRSEKSKKDQTARREIRI------LRRLSHPNIVRLIDAFED----KDHLYLVME 78

Query: 67  YMSSGSLKQFLKRTKRNVKKLPLSAW--KRWCSQILSALSYLHSCSPPIIHGNLTCDTIF 124
           Y   G L  +L       +  PLS    K+   QIL  L YLHS    IIH +L  + I 
Sbjct: 79  YCEGGDLFDYL------SRGGPLSEDEAKKIALQILRGLEYLHSNG--IIHRDLKPENIL 130

Query: 125 IQHNGLVKIGCD 136
           +  NG+VKI  D
Sbjct: 131 LDENGVVKI-AD 141

Length = 260

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 68.0 bits (167), Expect = 8e-14
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
           Q S  K  +   + I Q  + L  L+HPNIVK+      +      +  I EY  +GSL+
Sbjct: 32  QISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYI----GSIETSDSLYIILEYAENGSLR 87

Query: 75  QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           Q +K+        P S    +  Q+L  L+YLH     +IH ++    I    +G+VK+
Sbjct: 88  QIIKKF----GPFPESLVAVYVYQVLQGLAYLHEQG--VIHRDIKAANILTTKDGVVKL 140

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 65.6 bits (161), Expect = 6e-13
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 11/104 (10%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLS----A 91
           + +L HPN+V+       T  +   ++   EYM  G L  +L++++        S     
Sbjct: 50  MKKLGHPNVVRL--LGVCTEEEPLYLVL--EYMEGGDLLDYLRKSRPVFPSPEKSTLSLK 105

Query: 92  WK-RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
               +  QI   + YL S     +H +L      +  + +VKI 
Sbjct: 106 DLLSFAIQIAKGMEYLASK--KFVHRDLAARNCLVGEDLVVKIS 147

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 65.3 bits (160), Expect = 7e-13
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 13/135 (9%)

Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFE-N-LTQLEHPNIVKFHRYWTDTHNDKPRVIF 63
           G  +VW E+ +         +EK Q V E N L +L+HPNIV   RY+    +   + ++
Sbjct: 25  GKILVWKEIDYGNMTE----KEKQQLVSEVNILRELKHPNIV---RYYDRIIDRSNQTLY 77

Query: 64  I-TEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPP---IIHGNLT 119
           I  EY   G L Q +++ K+  K +      R  +Q+L AL   H+ S P   ++H +L 
Sbjct: 78  IVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLK 137

Query: 120 CDTIFIQHNGLVKIG 134
              IF+  N  VK+G
Sbjct: 138 PANIFLDANNNVKLG 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 18/136 (13%)

Query: 3   TEEGVEVVWNEV---QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKP 59
           TE+   VVW EV   + SE++   A  E        L+ L+HPNI+ ++ ++ D      
Sbjct: 22  TEDDSLVVWKEVNLTRLSEKERRDALNE-----IVILSLLQHPNIIAYYNHFMDD----- 71

Query: 60  RVIFIT-EYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNL 118
             + I  EY + G+L   + R K  + +  +  W  +  QI+SA+SY+H     I+H ++
Sbjct: 72  NTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLW--YLFQIVSAVSYIHKAG--ILHRDI 127

Query: 119 TCDTIFIQHNGLVKIG 134
               IF+   GL+K+G
Sbjct: 128 KTLNIFLTKAGLIKLG 143

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 59.4 bits (145), Expect = 9e-11
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 23/119 (19%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L +L+HPNIVK      D  + + ++  + EY     LK++L +       L  +  K  
Sbjct: 52  LKELKHPNIVKLL----DVIHTERKLYLVFEYCDM-DLKKYLDKRPG---PLSPNLIKSI 103

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD------------TYTHTI 142
             Q+L  L+Y HS    I+H +L    I I  +G++K+  D            TYTH +
Sbjct: 104 MYQLLRGLAYCHSHR--ILHRDLKPQNILINRDGVLKL-ADFGLARAFGIPLRTYTHEV 159

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 14/113 (12%)

Query: 25  QEEKIQQVF---ENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT 80
           +E+K++ V    E LT+L  HP I+K +     T  D+  + F+ EY  +G L Q++++ 
Sbjct: 41  KEKKVKYVKIEKEVLTRLNGHPGIIKLY----YTFQDEENLYFVLEYAPNGELLQYIRK- 95

Query: 81  KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
                 L     + + ++IL AL YLHS    IIH +L  + I +  +  +KI
Sbjct: 96  ---YGSLDEKCTRFYAAEILLALEYLHSKG--IIHRDLKPENILLDKDMHIKI 143

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 21  NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT 80
             K ++EKI    + L + +HPNIVK++     ++  K  +  + E+ S GSLK  LK T
Sbjct: 36  ESKEKKEKIINEIQILKKCKHPNIVKYY----GSYLKKDELWIVMEFCSGGSLKDLLKST 91

Query: 81  KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            +    L  S     C ++L  L YLHS    IIH ++    I +  +G VK+
Sbjct: 92  NQ---TLTESQIAYVCKELLKGLEYLHSNG--IIHRDIKAANILLTSDGEVKL 139

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 30  QQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPL 89
           ++  E L  L+H NIVK+            R+I   EY+ SGSL+ +L+R +     + L
Sbjct: 54  EREIEILRTLDHENIVKYKGVCEKPGGRSLRLIM--EYLPSGSLRDYLQRHRDQ---INL 108

Query: 90  SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
                + SQI   + YL S     IH +L    I ++   LVKI 
Sbjct: 109 KRLLLFSSQICKGMDYLGSQR--YIHRDLAARNILVESEDLVKIS 151

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 36/135 (26%), Positives = 73/135 (54%), Gaps = 9/135 (6%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           +   +G  V   +VQ  E  + KA+++ ++++ + L QL+HPN++K+      +  +   
Sbjct: 22  ICLLDGRVVALKKVQIFEMMDAKARQDCLKEI-DLLKQLDHPNVIKYL----ASFIENNE 76

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLP-LSAWKRWCSQILSALSYLHSCSPPIIHGNLT 119
           +  + E   +G L + +K  K+  + +P  + WK +  Q+ SAL ++H  S  I+H ++ 
Sbjct: 77  LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWK-YFVQLCSALEHMH--SKRIMHRDIK 133

Query: 120 CDTIFIQHNGLVKIG 134
              +FI   G+VK+G
Sbjct: 134 PANVFITATGVVKLG 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 56.8 bits (138), Expect = 8e-10
 Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 21  NFKAQEEKIQQV---FENLTQLEHPNIVKFHRYWTDTHNDKPRVIFIT-EYMSSGSLKQF 76
           +    EE  +Q+    + L   E P +VK +  +      K   I I  EYM  GSL   
Sbjct: 35  HVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAF-----YKEGEISIVLEYMDGGSLADL 89

Query: 77  LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           LK+    V K+P         QIL  L YLH+    IIH ++    + I   G VKI
Sbjct: 90  LKK----VGKIPEPVLAYIARQILKGLDYLHTKR-HIIHRDIKPSNLLINSKGEVKI 141

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 34/130 (26%), Positives = 71/130 (54%), Gaps = 7/130 (5%)

Query: 5   EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI 64
           +GV V   +VQ  +  + KA+ + I+++ + L QL HPN++K++  + + +     +  +
Sbjct: 26  DGVPVALKKVQIFDLMDAKARADCIKEI-DLLKQLNHPNVIKYYASFIEDN----ELNIV 80

Query: 65  TEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIF 124
            E   +G L + +K  K+  + +P     ++  Q+ SAL ++HS    ++H ++    +F
Sbjct: 81  LELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVF 138

Query: 125 IQHNGLVKIG 134
           I   G+VK+G
Sbjct: 139 ITATGVVKLG 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L++L+HPNIV   +Y      +    IF+ E +  GSL + LK+        P    + +
Sbjct: 56  LSKLQHPNIV---QYLGTEREEDNLYIFL-ELVPGGSLAKLLKK----YGSFPEPVIRLY 107

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
             QIL  L YLH  +   +H ++    I +  NG+VK+
Sbjct: 108 TRQILLGLEYLHDRN--TVHRDIKGANILVDTNGVVKL 143

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L+++ HP IVK H  +         +  + EY   G L   L +      +      + +
Sbjct: 47  LSRINHPFIVKLHYAFQTEEK----LYLVLEYAPGGELFSHLSK----EGRFSEERARFY 98

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            ++I+ AL YLHS    II+ +L  + I +  +G +K+
Sbjct: 99  AAEIVLALEYLHSLG--IIYRDLKPENILLDADGHIKL 134

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 25  QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
           Q+E I    E L +  HP IVK +R    T  DK  +  + EY   G L   L    R+ 
Sbjct: 36  QQEHIFSEKEILEECNHPFIVKLYR----TFKDKKYIYMLMEYCLGGELWTIL----RDR 87

Query: 85  KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
                   + + + ++ A  YLH+    II+ +L  + + +  NG VK+ 
Sbjct: 88  GLFDEYTARFYIACVVLAFEYLHNRG--IIYRDLKPENLLLDSNGYVKLV 135

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 51.9 bits (124), Expect = 4e-08
 Identities = 33/126 (26%), Positives = 68/126 (53%), Gaps = 7/126 (5%)

Query: 9   VVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYM 68
           V   +VQ  E  + KA+++ ++++ + L QL HPN++K+     D+  +   +  + E  
Sbjct: 30  VALKKVQIFEMMDAKARQDCVKEI-DLLKQLNHPNVIKY----LDSFIEDNELNIVLELA 84

Query: 69  SSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN 128
            +G L Q +K  K+  + +P     ++  Q+ SA+ ++HS    ++H ++    +FI   
Sbjct: 85  DAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR--VMHRDIKPANVFITAT 142

Query: 129 GLVKIG 134
           G+VK+G
Sbjct: 143 GVVKLG 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 51.5 bits (123), Expect = 5e-08
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L++L+HP IVKFH  + +          ITEY     L   L+  K   K L  +    W
Sbjct: 56  LSKLDHPAIVKFHASFLERDA----FCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEW 111

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             Q+L  + Y+H     I+H +L    IF+++N L+KIG
Sbjct: 112 FIQLLLGVHYMHQRR--ILHRDLKAKNIFLKNN-LLKIG 147

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 40  EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQI 99
           EHPNIVK      +   +   + F+ EYM  G+L Q +K   R  K    S  +    QI
Sbjct: 56  EHPNIVKLK----EVFRENDELYFVFEYME-GNLYQLMK--DRKGKPFSESVIRSIIYQI 108

Query: 100 LSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
           L  L+++H       H +L  + + +    +VKI  D
Sbjct: 109 LQGLAHIHKHG--FFHRDLKPENLLVSGPEVVKI-AD 142

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L+Q + P +VK +  +    N    +  + EY+  G L   L+    NV  L     + +
Sbjct: 47  LSQAQSPYVVKLYYSFQGKKN----LYLVMEYLPGGDLASLLE----NVGSLDEDVARIY 98

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            ++I+ AL YLHS    IIH +L  D I I  NG +K+
Sbjct: 99  IAEIVLALEYLHSNG--IIHRDLKPDNILIDSNGHLKL 134

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 41  HPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQI 99
            P IV F+  ++ +       +    EYM  GSL + LK  +  + +  L         +
Sbjct: 58  SPYIVGFYGAFYNNG-----DISICMEYMDGGSLDKILKEVQGRIPERILGKIAV---AV 109

Query: 100 LSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
           L  L+YLH     IIH ++    I +   G +K+ CD
Sbjct: 110 LKGLTYLHE-KHKIIHRDVKPSNILVNSRGQIKL-CD 144

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 23/124 (18%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L +L HPNI+K      D    K  +  + E+M +  L + +K  +R    LP S  K +
Sbjct: 52  LKELNHPNIIKLL----DVFRHKGDLYLVFEFMDT-DLYKLIKDRQR---GLPESLIKSY 103

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD------------TYTHTIE 143
             Q+L  L++ HS    I+H +L  + + I   G++K+  D             YTH + 
Sbjct: 104 LYQLLQGLAFCHSHG--ILHRDLKPENLLINTEGVLKL-ADFGLARSFGSPVRPYTHYVV 160

Query: 144 NKKY 147
            + Y
Sbjct: 161 TRWY 164

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L +L HPNIV+     T     K  +  + EYM    L   L   +    K   S  K +
Sbjct: 52  LQKLRHPNIVRLKEIVTS--KGKGSIYMVFEYMDH-DLTGLLDSPE---VKFTESQIKCY 105

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             Q+L  L YLHS    I+H ++    I I ++G++K+ 
Sbjct: 106 MKQLLEGLQYLHSNG--ILHRDIKGSNILINNDGVLKLA 142

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI-TEYMSSGSLKQFLKRTKRNVK 85
           + ++   E L  L+H NIV++  + T         + I  EY+  GS+   L    R   
Sbjct: 53  KALRSEIETLKDLDHLNIVQYLGFET-----TEEYLSIFLEYVPGGSIGSCL----RTYG 103

Query: 86  KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           +      + +  Q+L  L+YLHS    I+H +L  D + +  +G+ KI
Sbjct: 104 RFEEQLVRFFTEQVLEGLAYLHSKG--ILHRDLKADNLLVDADGICKI 149

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 14  VQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSL 73
           ++ + R+  KA E++ Q     L+QL+HPNIV +   W     +   +  +  +   G L
Sbjct: 35  LRNASRRERKAAEQEAQL----LSQLKHPNIVAYRESW---EGEDGLLYIVMGFCEGGDL 87

Query: 74  KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
              LK  K   K LP +    W  QI  AL YLH     I+H +L    +F+    ++K+
Sbjct: 88  YHKLKEQKG--KLLPENQVVEWFVQIAMALQYLH--EKHILHRDLKTQNVFLTRTNIIKV 143

Query: 134 GCDTYTHTIENKKYLSAT 151
           G       +EN+  +++T
Sbjct: 144 GDLGIARVLENQCDMAST 161

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 34  ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWK 93
           E L  L H NIVK+    T+   +  ++I   E++ SGSLK++L    RN  K+ L    
Sbjct: 58  EILRNLYHENIVKYKGICTEDGGNGIKLIM--EFLPSGSLKEYL---PRNKNKINLKQQL 112

Query: 94  RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           ++  QI   + YL S     +H +L    + ++    VKIG    T  IE  K
Sbjct: 113 KYAVQICKGMDYLGSRQ--YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK 163

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 48.4 bits (115), Expect = 7e-07
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 13/114 (11%)

Query: 25  QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
           + EK+Q+  + L  L+H NIV+   Y     +D    IF+ E++  GS+   L R     
Sbjct: 45  EYEKLQEEVDLLKSLKHVNIVQ---YLGTCLDDNTISIFM-EFVPGGSISSILNR----F 96

Query: 85  KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI---GC 135
             LP   + ++  QIL  ++YLH+    ++H ++  + + +  NG++K+   GC
Sbjct: 97  GPLPEPVFCKYTKQILDGVAYLHNNC--VVHRDIKGNNVMLMPNGIIKLIDFGC 148

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 16/119 (13%)

Query: 26  EEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK 85
            +  ++  E LT  +H NIVKF  Y   T  D P ++F  EYM  G L +FL+    +  
Sbjct: 52  RKDFEREAELLTNFQHENIVKF--YGVCTEGDPPIMVF--EYMEHGDLNKFLRSHGPDAA 107

Query: 86  ----------KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
                     +L LS   +   QI S + YL   S   +H +L      + ++ +VKIG
Sbjct: 108 FLKSPDSPMGELTLSQLLQIAVQIASGMVYL--ASQHFVHRDLATRNCLVGYDLVVKIG 164

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 41  HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQIL 100
           HPNIV ++    D++     +  + EYM  GSL   + +      ++        C ++L
Sbjct: 74  HPNIVDYY----DSYLVGDELWVVMEYMDGGSLTDIITQNF---VRMNEPQIAYVCREVL 126

Query: 101 SALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             L YLH  S  +IH ++  D I +  +G VK+ 
Sbjct: 127 QGLEYLH--SQNVIHRDIKSDNILLSKDGSVKLA 158

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 25  QEEKIQQVFEN--LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
           Q+E+   V E   L  + HPNI+ +   + D +    ++  + EY   G L + + + K+
Sbjct: 40  QKEREDAVNEIRILASVNHPNIISYKEAFLDGN----KLCIVMEYAPFGDLSKAISKRKK 95

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             K +P     R   Q+L  L  LH     I+H +L    I +  N LVKIG
Sbjct: 96  KRKLIPEQEIWRIFIQLLRGLQALHEQK--ILHRDLKSANILLVANDLVKIG 145

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 19/138 (13%)

Query: 2   DTEEGVEVVWNEVQF-----SERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN 56
           D + G E+   +V F       +K   A E +IQ     L  L+H  IV+++    D   
Sbjct: 23  DVDTGRELAVKQVPFDPDSPETKKEVNALECEIQL----LKNLQHERIVQYYGCLRD--- 75

Query: 57  DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
           D+   IF+ EYM  GS+K  LK        L  +  +++  QIL  + YLHS    I+H 
Sbjct: 76  DETLSIFM-EYMPGGSVKDQLKA----YGALTETVTRKYTRQILEGVEYLHSNM--IVHR 128

Query: 117 NLTCDTIFIQHNGLVKIG 134
           ++    I     G VK+G
Sbjct: 129 DIKGANILRDSAGNVKLG 146

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 15/100 (15%)

Query: 36  LTQLEHPNIVKFHRYWTDTH--NDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWK 93
           +   +HPNIV+ +     ++   D+  V+   E++  G+L   +  T+ N +++      
Sbjct: 70  MRDYQHPNIVEMY----SSYLVGDELWVVM--EFLEGGALTDIVTHTRMNEEQIATV--- 120

Query: 94  RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
             C  +L ALS+LH  +  +IH ++  D+I +  +G VK+
Sbjct: 121 --CLAVLKALSFLH--AQGVIHRDIKSDSILLTSDGRVKL 156

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 25  QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
           QE+ +      L ++ HP I++   +W  T +D+  +  + EY+  G L  +L    RN 
Sbjct: 44  QEQHVHNEKRVLKEVSHPFIIRL--FW--TEHDQRFLYMLMEYVPGGELFSYL----RNS 95

Query: 85  KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            +   S    + S+I+ AL YLHS    I++ +L  + I +   G +K+
Sbjct: 96  GRFSNSTGLFYASEIVCALEYLHSKE--IVYRDLKPENILLDKEGHIKL 142

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 13/114 (11%)

Query: 20  KNFKAQEEKIQQVF---ENLTQLEHPNIVK-FHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           K    +  K+++V    E L  L+HP +   +  + T+T+     +  + +Y   G L +
Sbjct: 36  KKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETY-----LCLVMDYCPGGELFR 90

Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
            L+R       L     + + +++L AL YLH     I++ +L  + I +  +G
Sbjct: 91  LLQRQPGKC--LSEEVARFYAAEVLLALEYLHLLG--IVYRDLKPENILLHESG 140

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 14/112 (12%)

Query: 24  AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI-TEYMSSGSLKQFLKRTKR 82
           ++++ I++  + + +L HPN+V+ +   T     K R IFI TEYM++G L  +L+  K 
Sbjct: 42  SEDDFIEEA-KVMMKLSHPNLVQLYGVCT-----KQRPIFIVTEYMANGCLLNYLRERKG 95

Query: 83  NVKK-LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            +     L      CS +  A+ YL S     IH +L      +  + +VK+
Sbjct: 96  KLGTEWLLDM----CSDVCEAMEYLESNG--FIHRDLAARNCLVGEDNVVKV 141

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 17/138 (12%)

Query: 2   DTEEGVEVVWNEVQF-----SERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN 56
           D + G E+   +VQF        K   A E +IQ     L  L+H  IV+++    D   
Sbjct: 23  DVDTGRELAAKQVQFDPESPETSKEVSALECEIQL----LKNLQHERIVQYYGCLRD-RA 77

Query: 57  DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
           +K   IF+ EYM  GS+K  LK        L  S  +++  QIL  +SYLHS    I+H 
Sbjct: 78  EKTLTIFM-EYMPGGSVKDQLKA----YGALTESVTRKYTRQILEGMSYLHSNM--IVHR 130

Query: 117 NLTCDTIFIQHNGLVKIG 134
           ++    I     G VK+G
Sbjct: 131 DIKGANILRDSAGNVKLG 148

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 27/143 (18%)

Query: 1   MDTEEGVEVVWNEVQFSERK------NFKA-QEEKIQQVFENLTQLEHPNIVKFHRYWTD 53
            D E G  V   +++  ERK      NF A +E K+      L +L+HPNI+       D
Sbjct: 20  RDKETGRIVAIKKIKLGERKEAKDGINFTALREIKL------LQELKHPNIIGLL----D 69

Query: 54  THNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSA--WKRWCSQILSALSYLHSCSP 111
               K  +  + E+M +  L++ +K      K + L+    K +    L  L YLHS   
Sbjct: 70  VFGHKSNINLVFEFMET-DLEKVIKD-----KSIVLTPADIKSYMLMTLRGLEYLHSNW- 122

Query: 112 PIIHGNLTCDTIFIQHNGLVKIG 134
            I+H +L  + + I  +G++K+ 
Sbjct: 123 -ILHRDLKPNNLLIASDGVLKLA 144

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 35/140 (25%)

Query: 1   MDTEEG-VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH---PNIVKFHRYWTDTHN 56
           +DT +  V  +  EV                     L+QL     PNI K++  +     
Sbjct: 36  LDTPDDDVSDIQREVAL-------------------LSQLRQSQPPNITKYYGSYLK--- 73

Query: 57  DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
             PR+  I EY   GS++  +K     + +  +S   R   ++L AL Y+H     +IH 
Sbjct: 74  -GPRLWIIMEYAEGGSVRTLMKAGP--IAEKYISVIIR---EVLVALKYIHKV--GVIHR 125

Query: 117 NLTCDTIFIQHNGLVKIGCD 136
           ++    I + + G VK+ CD
Sbjct: 126 DIKAANILVTNTGNVKL-CD 144

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 17/123 (13%)

Query: 20  KNFKAQEE------KIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSL 73
           K FK  E+         +  + L QL H NIV       +    K R+  + EY+   +L
Sbjct: 32  KKFKESEDDEDVKKTALREVKVLRQLRHENIVNL----KEAFRRKGRLYLVFEYVER-TL 86

Query: 74  KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            + L+ +      LP  A + +  Q+L A++Y HS +  IIH ++  + I +  +G++K+
Sbjct: 87  LELLEASPGG---LPPDAVRSYIWQLLQAIAYCHSHN--IIHRDIKPENILVSESGVLKL 141

Query: 134 GCD 136
            CD
Sbjct: 142 -CD 143

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 21  NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT 80
           N + +EE I +    L +L+   I++++    ++  DK ++  + EY  +G L + LK  
Sbjct: 39  NRREREEAIDEA-RVLAKLDSSYIIRYY----ESFLDKGKLNIVMEYAENGDLHKLLK-- 91

Query: 81  KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            +  + LP     R+  QIL  L++LH  S  I+H ++    +F+     VKIG
Sbjct: 92  MQRGRPLPEDQVWRFFIQILLGLAHLH--SKKILHRDIKSLNLFLDAYDNVKIG 143

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 22/54 (40%), Positives = 37/54 (68%)

Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
           +  TK      +K EK+ EEE+++KKKK    +KK+E+E+E+K+KK++   +EE
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459

Length = 482

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 17/113 (15%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + +++HPN+V+     T     +P    ITE+M+ G+L  +L+   R  +++        
Sbjct: 56  MKEIKHPNLVQLLGVCTR----EPPFYIITEFMTYGNLLDYLRECNR--QEVNAVVLLYM 109

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG---------CDTYT 139
            +QI SA+ YL   +   IH +L      +  N LVK+           DTYT
Sbjct: 110 ATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 160

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L   +HP +VK      D        + + EYM S  L + L+  +R    LP +  K +
Sbjct: 53  LQACQHPYVVKLL----DVFPHGSGFVLVMEYMPS-DLSEVLRDEER---PLPEAQVKSY 104

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
              +L  ++Y+H+    I+H +L    + I  +G++KI 
Sbjct: 105 MRMLLKGVAYMHANG--IMHRDLKPANLLISADGVLKIA 141

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 41  HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQIL 100
            PNIVK +    D   D+  +  + EY+  GSL+  LK+  R    L  S      +QIL
Sbjct: 57  PPNIVKLY----DFFQDEGSLYLVMEYVDGGSLEDLLKKIGRK-GPLSESEALFILAQIL 111

Query: 101 SALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
           SAL YLHS    IIH ++  + I +  +G
Sbjct: 112 SALEYLHSKG--IIHRDIKPENILLDRDG 138

Length = 384

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 28/126 (22%)

Query: 28  KIQQVFENLTQ-------------LEHPNIVKFHRYWTDTHNDKPRVIFI-TEYMSSGSL 73
           KI  VF++L               L H NI+           +    ++I TE M +  L
Sbjct: 32  KISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELMET-DL 90

Query: 74  KQFLKRTKRNVKKLPLSAWKRWCS---QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL 130
            + +K         PL+          QIL  L YLHS +  +IH +L    I +  N  
Sbjct: 91  HKVIK------SPQPLTD-DHIQYFLYQILRGLKYLHSAN--VIHRDLKPSNILVNSNCD 141

Query: 131 VKIGCD 136
           +KI CD
Sbjct: 142 LKI-CD 146

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 20/118 (16%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L +L HPNIVK        H +  ++  + E++    LK+F+  +   +  +PL   K +
Sbjct: 53  LKELNHPNIVKLLDV---IHTEN-KLYLVFEFLHQ-DLKKFMDAS--PLSGIPLPLIKSY 105

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG-----------CDTYTHTI 142
             Q+L  L++ HS    ++H +L    + I   G +K+              TYTH +
Sbjct: 106 LFQLLQGLAFCHSHR--VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEV 161

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR-------TKRNVKKLP 88
           L++L  PNI    R       D P  + I EYM +G L QFL++          N K L 
Sbjct: 73  LSRLSDPNIA---RLLGVCTVDPPLCM-IMEYMENGDLNQFLQKHVAETSGLACNSKSLS 128

Query: 89  LSAWKRWCSQILSALSYLHS 108
            S      +QI S + YL S
Sbjct: 129 FSTLLYMATQIASGMRYLES 148

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 25/131 (19%)

Query: 16  FSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
            + RK+F       Q+  E LT L+H +IVKF+        D   +I + EYM  G L +
Sbjct: 48  LAARKDF-------QREAELLTNLQHEHIVKFY----GVCGDGDPLIMVFEYMKHGDLNK 96

Query: 76  FLK------------RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           FL+            + ++   +L LS      SQI S + YL   S   +H +L     
Sbjct: 97  FLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYL--ASQHFVHRDLATRNC 154

Query: 124 FIQHNGLVKIG 134
            +  N LVKIG
Sbjct: 155 LVGANLLVKIG 165

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 35/45 (77%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
           EK ++K EEE++EKKKK    ++K++E+E+EK+KK+++   +EE 
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 34/52 (65%)

Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
            K     +K  EK E++ EE+KK+KK++    K+KE+E++++K+K   ++E 
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457

Length = 482

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 14/119 (11%)

Query: 15  QFSERKNFKAQEEKIQQVFEN----LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSS 70
           Q +  +N  +++E++ +        + +L HP+I+   R    T  D    +F+ E+M+ 
Sbjct: 32  QVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHII---RMLGATCEDSHFNLFV-EWMAG 87

Query: 71  GSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
           GS+   L            +    +  Q+L  LSYLH     IIH ++    + I   G
Sbjct: 88  GSVSHLLS----KYGAFKEAVIINYTEQLLRGLSYLHENQ--IIHRDVKGANLLIDSTG 140

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
              ++ +++    +  L+H N+++ +            ++ +TE    GSL   L+  K 
Sbjct: 38  DIMDDFLKEA-AIMHSLDHENLIRLYGVVLT-----HPLMMVTELAPLGSLLDRLR--KD 89

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            +    +S    +  QI + + YL S     IH +L    I +  +  VKIG
Sbjct: 90  ALGHFLISTLCDYAVQIANGMRYLESKR--FIHRDLAARNILLASDDKVKIG 139

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 25  QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
           Q + + Q    L +L HP IV        +  D+ RV F+ E++  G L   L    R  
Sbjct: 61  QVQHVAQEKSILMELSHPFIVNMMC----SFQDENRVYFLLEFVVGGELFTHL----RKA 112

Query: 85  KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            + P    K + ++++ A  YLHS    II+ +L  + + + + G VK+
Sbjct: 113 GRFPNDVAKFYHAELVLAFEYLHSKD--IIYRDLKPENLLLDNKGHVKV 159

Length = 329

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 163 YEIVTKTNNVT----EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
           Y  V K         E+++EKEE++EEE+K   KEEE  ++E+++EKKKK KK+
Sbjct: 24  YLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKV 77

Length = 529

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L  + HP +V    Y +   +    +  + EY+  G L   L    R   + P    + +
Sbjct: 55  LQSIRHPFLVNL--YGSFQDDS--NLYLVMEYVPGGELFSHL----RKSGRFPEPVARFY 106

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            +Q++ AL YLHS    I++ +L  + + +  +G +KI
Sbjct: 107 AAQVVLALEYLHSLD--IVYRDLKPENLLLDSDGYIKI 142

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 30  QQVFENLT---QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           +Q+   L      + P IVK++  + D  +    +    EY   GSL    K+ K+   +
Sbjct: 44  KQILRELEINKSCKSPYIVKYYGAFLDESSSS--IGIAMEYCEGGSLDSIYKKVKKRGGR 101

Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
           +      +    +L  LSYLH  S  IIH ++    I +   G VK+ CD
Sbjct: 102 IGEKVLGKIAESVLKGLSYLH--SRKIIHRDIKPSNILLTRKGQVKL-CD 148

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 7   VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITE 66
           VE+        +RK  ++  + + +    L +L+H NIV++      +  D   +    E
Sbjct: 33  VELPSVSASSKDRK--RSMLDALAREIALLKELQHENIVQY----LGSSLDADHLNIFLE 86

Query: 67  YMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ 126
           Y+  GS+   L     N      +  + +  QIL  L+YLH  +  IIH ++    I + 
Sbjct: 87  YVPGGSVAALLN----NYGAFEETLVRNFVRQILKGLNYLH--NRGIIHRDIKGANILVD 140

Query: 127 HNGLVKI 133
           + G +KI
Sbjct: 141 NKGGIKI 147

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 15/133 (11%)

Query: 20  KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
           K  K   +  +   +NL +++  NI+K + +  D  +D PR+  I EY + G L++ L +
Sbjct: 56  KGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDK 115

Query: 80  TKRNVKKLPLSAWKRW-----CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            K       LS   +      C + L  L Y ++  P   + NLT  +  +  N  +KI 
Sbjct: 116 EKD------LSFKTKLDMAIDCCKGLYNL-YKYTNKP---YKNLTSVSFLVTENYKLKII 165

Query: 135 CDTYTHTIENKKY 147
           C      + +  +
Sbjct: 166 CHGLEKILSSPPF 178

Length = 283

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 9/121 (7%)

Query: 14  VQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSL 73
           V+  +R+  +      ++    L  L H NIVK+    ++       +  I EY+  GSL
Sbjct: 38  VKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKG--LQLIMEYVPLGSL 95

Query: 74  KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           + +L + K N+ +L L A      QI   ++YLH  S   IH +L    + + ++ LVKI
Sbjct: 96  RDYLPKHKLNLAQLLLFA-----QQICEGMAYLH--SQHYIHRDLAARNVLLDNDRLVKI 148

Query: 134 G 134
           G
Sbjct: 149 G 149

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 38  QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCS 97
           +L H  +V+ +   ++    +P  I +TEYMS GSL  FLK      KKL L       +
Sbjct: 57  KLRHDKLVQLYAVCSEE---EPIYI-VTEYMSKGSLLDFLK--SGEGKKLRLPQLVDMAA 110

Query: 98  QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           QI   ++YL S +   IH +L    I +  N + KI
Sbjct: 111 QIAEGMAYLESRN--YIHRDLAARNILVGENLVCKI 144

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 17/138 (12%)

Query: 2   DTEEGVEVVWNEVQF-----SERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN 56
           D + G E+   +V F        K   A E +IQ     L  L H  IV+++    D   
Sbjct: 23  DADTGRELAVKQVPFDPDSQETSKEVNALECEIQL----LKNLRHDRIVQYYGCLRD-PE 77

Query: 57  DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
           +K   IF+ EYM  GS+K  LK      + +     +R+  QIL  +SYLHS    I+H 
Sbjct: 78  EKKLSIFV-EYMPGGSIKDQLKAYGALTENVT----RRYTRQILQGVSYLHSNM--IVHR 130

Query: 117 NLTCDTIFIQHNGLVKIG 134
           ++    I     G VK+G
Sbjct: 131 DIKGANILRDSAGNVKLG 148

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI+      T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 59  MGQFDHPNIIHLEGVVTKS---KP-VMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLR- 113

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
              I S + YL       +H +L    I +  N + K+
Sbjct: 114 --GIASGMKYLSDMG--YVHRDLAARNILVNSNLVCKV 147

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 28  KIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL 87
           +I +  E L  + HPN+VK H  +   HN + +V+   E+M  GSL+           + 
Sbjct: 118 QICREIEILRDVNHPNVVKCHDMF--DHNGEIQVLL--EFMDGGSLE-----GTHIADEQ 168

Query: 88  PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            L+   R   QILS ++YLH     I+H ++    + I     VKI
Sbjct: 169 FLADVAR---QILSGIAYLH--RRHIVHRDIKPSNLLINSAKNVKI 209

Length = 353

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 17/138 (12%)

Query: 2   DTEEGVEVVWNEVQFS-----ERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN 56
           D + G E+   +VQF        K   A E +IQ     L  L H  IV+++    D   
Sbjct: 23  DADTGRELAVKQVQFDPESPETSKEVNALECEIQL----LKNLLHERIVQYYGCLRDPM- 77

Query: 57  DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
           ++   IF+ E+M  GS+K  LK    +   L  +  +++  QIL  +SYLHS    I+H 
Sbjct: 78  ERTLSIFM-EHMPGGSIKDQLK----SYGALTENVTRKYTRQILEGVSYLHSNM--IVHR 130

Query: 117 NLTCDTIFIQHNGLVKIG 134
           ++    I     G VK+G
Sbjct: 131 DIKGANILRDSVGNVKLG 148

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  + E    G L+ +L+  K +   
Sbjct: 52  EKFLQEAYIMRQFDHPHIVKLIGVITE-----NPVWIVMELAPLGELRSYLQVNKYS--- 103

Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +     VK+G    +  +E++ 
Sbjct: 104 LDLASLILYSYQLSTALAYLESKR--FVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDES 161

Query: 147 YLSATR 152
           Y  A++
Sbjct: 162 YYKASK 167

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 36/44 (81%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
           EKK+E+E++E+++K    K++EE+++E++++K+++K++   + E
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 24/38 (63%), Positives = 36/38 (94%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
            KKKE+EEEEE+EKK+++KEEEE++ E+EKE++++KKK
Sbjct: 437 GKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 34/44 (77%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
            +KK +EE++E++KK    +++E+++E+EKEKK+++K+   +E 
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462

Length = 482

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 26  EEKIQQVFENLTQL-EHPNIVKFHRYWT--DTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
           EE+I++ +  L +   HPNI  F+  +   +   +  ++  + E    GS+   +K  ++
Sbjct: 46  EEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRK 105

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
             K+L          + L  L+YLH     +IH ++    I +  N  VK+  D
Sbjct: 106 KGKRLKEEWIAYILRETLRGLAYLHENK--VIHRDIKGQNILLTKNAEVKL-VD 156

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 14/109 (12%)

Query: 25  QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
           Q EK   VFE  T   HP +V  H  +        R+ F+ E++S G L   ++R     
Sbjct: 43  QTEK--HVFE--TASNHPFLVGLHSCFQTE----SRLFFVIEFVSGGDLMFHMQRQ---- 90

Query: 85  KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           +KLP    + + ++I  AL++LH     II+ +L  D + +   G +K+
Sbjct: 91  RKLPEEHARFYSAEISLALNFLHERG--IIYRDLKLDNVLLDAEGHIKL 137

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 21/130 (16%)

Query: 20  KNFKAQEEKIQQVF----ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           K  K   E  +Q F    E LT L+H +IV+F+   T+    +P ++ + EYM  G L +
Sbjct: 41  KALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTE---GRP-LLMVFEYMRHGDLNR 96

Query: 76  FLKRTKRNVK-----------KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIF 124
           FL+    + K           +L L       SQI S + YL S     +H +L      
Sbjct: 97  FLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH--FVHRDLATRNCL 154

Query: 125 IQHNGLVKIG 134
           +    +VKIG
Sbjct: 155 VGQGLVVKIG 164

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L++ +HPNIV  +    + +  + ++  + E+   G+L   +   +R + +  +      
Sbjct: 56  LSECKHPNIVGLY----EAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRY---V 108

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           C Q+L AL++LH  S  +IH +L    I +  +G VK+
Sbjct: 109 CRQMLEALNFLH--SHKVIHRDLKAGNILLTLDGDVKL 144

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + QL+HP +V+ +   T     +  +  ITEYM +GSL  FLK  +    KL ++     
Sbjct: 55  MKQLQHPRLVRLYAVVT-----QEPIYIITEYMENGSLVDFLKTPEG--IKLTINKLIDM 107

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLS 149
            +QI   ++++   +   IH +L    I +      KI        IE+ +Y +
Sbjct: 108 AAQIAEGMAFIERKN--YIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTA 159

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 12/96 (12%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           ++QL H ++VK +       N     I + EY+  G L  FL R K NV       WK  
Sbjct: 55  MSQLSHKHLVKLYGVCVRDEN-----IMVEEYVKFGPLDVFLHREKNNVS----LHWKLD 105

Query: 96  CS-QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL 130
            + Q+ SAL YL      ++HGN+    I +   GL
Sbjct: 106 VAKQLASALHYLEDKK--LVHGNVCGKNILVARYGL 139

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 17/45 (37%), Positives = 31/45 (68%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
           +++KE+E+ +   K K KK  + K +EKEK K++K++K +R+ E 
Sbjct: 42  DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 24  AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI-TEYMSSGSLKQFLKRTKR 82
           +++E I++  + + +L H  +V+ +   T     K R I+I TEYMS+G L  +L+    
Sbjct: 42  SEDEFIEEA-KVMMKLSHEKLVQLYGVCT-----KQRPIYIVTEYMSNGCLLNYLREHG- 94

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
             K+   S     C  +   ++YL   S   IH +L      +   G VK+
Sbjct: 95  --KRFQPSQLLEMCKDVCEGMAYLE--SKQFIHRDLAARNCLVDDQGCVKV 141

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 156 GRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
            +   G+ E+        E K+E +    ++K+ K   + +KKKEK++ K  K K 
Sbjct: 33  KKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKS 88

Length = 330

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 29  IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP 88
           +QQ      QL+HPNI+    Y T +      +  ++  M+ GS +  LK        LP
Sbjct: 46  LQQEIITSRQLQHPNILP---YVT-SFIVDSELYVVSPLMAYGSCEDLLKTHFPE--GLP 99

Query: 89  LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
             A       +L+AL Y+HS     IH ++    I +  +G V +
Sbjct: 100 ELAIAFILKDVLNALDYIHSKG--FIHRSVKASHILLSGDGKVVL 142

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   +P +I ITEYM +GSL +FL+          L    R 
Sbjct: 59  MGQFDHPNIIRLEGVVTKS---RPVMI-ITEYMENGSLDKFLRENDGKFTVGQLVGMLR- 113

Query: 96  CSQILSALSYL 106
              I S + YL
Sbjct: 114 --GIASGMKYL 122

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
             KKE   E +EE  K + E E++ +E+  E +K +K++++KEEN
Sbjct: 53  AIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEEN 97

Length = 520

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 30/171 (17%)

Query: 1   MDTEEGVEVVWNEVQFSERKNF-KAQEEKIQQVFENLT---------QLEHPNIVKFHRY 50
            DT  G  V   +V+  E  N      + +     + T         +++H NI+     
Sbjct: 29  YDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGL--- 85

Query: 51  WTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCS 110
             D + +   +  + + M+S  LK+ + R  R    L  S  K    QIL+ L+ LH   
Sbjct: 86  -VDVYVEGDFINLVMDIMAS-DLKKVVDRKIR----LTESQVKCILLQILNGLNVLHKWY 139

Query: 111 PPIIHGNLTCDTIFIQHNGLVKI---------GCDTYTHTIENKKYLSATR 152
              +H +L+   IFI   G+ KI         G   Y+ T+   + +    
Sbjct: 140 --FMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRRE 188

Length = 335

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 20/38 (52%), Positives = 37/38 (97%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
           +KK+E+EEEE+E+K+++K+EEEE+ +E+++E+++KKKK
Sbjct: 438 KKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 18/48 (37%), Positives = 37/48 (77%)

Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
           E   K       KK++EEEEEE++KK++++EEE+++ +E+++++++KK
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 15/54 (27%), Positives = 39/54 (72%)

Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
           E +T +   T+K K+  E+ E++++++KKE+++K    +K++++++++  +KEE
Sbjct: 400 EFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/46 (34%), Positives = 37/46 (80%)

Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
           V + +K++EEE++E+KKK    ++++++E+E+++KK+++K   +EE
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461

Length = 482

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 32  VFENLTQLEHPNIVKFHRYWTDTHNDKP-RVIFITEYMSSGSLKQFLKRTKRNVKKLPLS 90
           + + L   +HPNIV+       +  D+  +V  + E++    L+ +L   K     LP  
Sbjct: 52  LLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DLRTYL--DKVPPPGLPAE 108

Query: 91  AWKRWCSQILSALSYLH-SCSPPIIHGNLTCDTIFIQHNGLVKI 133
             K    Q L  L +LH +C   I+H +L  + I +   G VK+
Sbjct: 109 TIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKL 149

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
           T  K EKE E EEE+KK+KK+++E KKEK+++K KK+K +  K  
Sbjct: 139 TTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   +  T+ N +++        C  +L ALS LH+    +IH ++  D+I
Sbjct: 95  VMEFLEGGALTDIVTHTRMNEEQIAAV-----CLAVLKALSVLHAQG--VIHRDIKSDSI 147

Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
            + H+G VK+     C   +  +  +K L  T
Sbjct: 148 LLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGT 179

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 19/38 (50%), Positives = 36/38 (94%)

Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
            +K++E+EEE+E+++++K++EEEE ++EKE+E++KKKK
Sbjct: 438 KKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 21/48 (43%), Positives = 36/48 (75%)

Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
           E   +        K+KEEEEEEEK+KK++E+EE+++E E+EK+++++K
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472

Length = 482

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L +L+HPNIV       D    + R+  I E++S   LK++L    +  + +     K +
Sbjct: 53  LKELQHPNIVCLQ----DVLMQESRLYLIFEFLSM-DLKKYLDSLPKG-QYMDAELVKSY 106

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
             QIL  + + HS    ++H +L    + I + G++K+
Sbjct: 107 LYQILQGILFCHSRR--VLHRDLKPQNLLIDNKGVIKL 142

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L +L HP +V     + D  N    +  + + +  G L+  L +      K      K W
Sbjct: 54  LQELNHPFLVNLWYSFQDEEN----MYLVVDLLLGGDLRYHLSQKV----KFSEEQVKFW 105

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             +I+ AL YLHS    IIH ++  D I +   G V I 
Sbjct: 106 ICEIVLALEYLHSKG--IIHRDIKPDNILLDEQGHVHIT 142

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 13/105 (12%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR-------TKRNVKKLP 88
           +++L+ PNI++            P +  ITEYM +G L QFL R        K +V  + 
Sbjct: 73  MSRLKDPNIIRLLAVCIT---SDP-LCMITEYMENGDLNQFLSRHEPQEAAEKADVVTIS 128

Query: 89  LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            S      +QI S + YL S +   +H +L      +  N  +KI
Sbjct: 129 YSTLIFMATQIASGMKYLSSLN--FVHRDLATRNCLVGKNYTIKI 171

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 13/121 (10%)

Query: 19  RKNFKAQEEKIQQVFENLT----QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
            K+ + +++ I  +   +T    QL HPNIV++++ + +      R+  + + +    L 
Sbjct: 42  GKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEND----RLYIVMDLIEGAPLG 97

Query: 75  QFLKRTKRNVKKLPLSAWKRW--CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVK 132
           +     K   KK   +  + W    Q++ AL YLH     I+H +LT + I +  +  V 
Sbjct: 98  EHFNSLKE--KKQRFTEERIWNIFVQMVLALRYLHK-EKRIVHRDLTPNNIMLGEDDKVT 154

Query: 133 I 133
           I
Sbjct: 155 I 155

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 14/109 (12%)

Query: 25  QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
           Q EK   VFE  +   HP +V  H  +      + R+ F+ EY++ G L   ++R     
Sbjct: 43  QTEK--HVFEQASN--HPFLVGLHSCF----QTESRLFFVIEYVNGGDLMFHMQRQ---- 90

Query: 85  KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           +KLP    + + ++I  AL+YLH     II+ +L  D + +   G +K+
Sbjct: 91  RKLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKL 137

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 22  FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK 81
               + K  Q  E L Q +HPNIVK           K  +  + E +  GSL  FL++ K
Sbjct: 32  PPDLKRKFLQEAEILKQYDHPNIVKLIGVCV----QKQPIYIVMELVPGGSLLTFLRKKK 87

Query: 82  RNVKKLPLSAWKRWCSQILSALSYLHS--CSPPIIHGNLTCDTIFIQHNGLVKI 133
               +L +    +      + + YL S  C    IH +L      +  N ++KI
Sbjct: 88  ---NRLTVKKLLQMSLDAAAGMEYLESKNC----IHRDLAARNCLVGENNVLKI 134

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK-LPLSAWKR 94
           L  L HPNIV+        H D   +  + EY      +Q L     N+      S  K 
Sbjct: 60  LLNLRHPNIVELKEVVVGKHLDS--IFLVMEY-----CEQDLASLLDNMPTPFSESQVKC 112

Query: 95  WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
              Q+L  L YLH     IIH +L    + +   G +KI  D
Sbjct: 113 LMLQLLRGLQYLHENF--IIHRDLKVSNLLLTDKGCLKI-AD 151

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 16/101 (15%)

Query: 38  QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP----LSAWK 93
           +L HP +++ +   T    ++P  I +TE M  GSL ++L+       KLP    ++A  
Sbjct: 57  KLRHPKLIQLYAVCTL---EEPIYI-VTELMKYGSLLEYLQGGAGRALKLPQLIDMAA-- 110

Query: 94  RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
               Q+ S ++YL + +   IH +L    + +  N + K+ 
Sbjct: 111 ----QVASGMAYLEAQN--YIHRDLAARNVLVGENNICKVA 145

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 18/44 (40%), Positives = 36/44 (81%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
           E+KKEK+++    KKK+++EEEEK+K++E++++++++    KEE
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 17/45 (37%), Positives = 37/45 (82%)

Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
            EKK++K++    +KK++++EEE++KKE+EKE+++++ +  ++EE
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469

Length = 482

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
           K K   E++  K  KK   ++ ++KEKEK+K K K   ++
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRD 418

Length = 434

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 4/47 (8%)

Query: 166 VTKTNNVTEKKKEKEEEEEEEKK----KKKKEEEEKKKEKEKEKKKK 208
           V K ++  E ++EKEE+E  +++    K KK+EE+KKKE EK +K K
Sbjct: 544 VWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590

Length = 651

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
           KT   +EKK  K  ++   K+ +KKE+E++K  K K++ +  K I ++
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKP-KVKKRHRDTKNIGKR 425

Length = 434

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 6/48 (12%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEK---EKEKK---KKKKKIMRK 215
             ++E++EE +E+K++KKKEE E K  K   E+++K   K++KK  RK
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 18/56 (32%), Positives = 41/56 (73%)

Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
            +IV K     E++K++++++    KKK++EEEE+K++KE+EK++++++   ++E 
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468

Length = 482

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 157 RPISGQYEIVTKTNNVTEKKKEKEEE-----EEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
           +P++   ++  + +   E  K  E+      E++ KK KKKE++EK+KE++K+KKK+ + 
Sbjct: 165 KPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 36  LTQLEHPNIVKFHR-YWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR 94
           L +++HPNIV F   +  D H     +  + EY   G L Q +K  +   K  P     +
Sbjct: 52  LAKMKHPNIVAFKESFEADGH-----LYIVMEYCDGGDLMQKIKLQRG--KLFPEDTILQ 104

Query: 95  WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
           W  Q+   + ++H     ++H ++    IF+  NG VK+G
Sbjct: 105 WFVQMCLGVQHIHE--KRVLHRDIKSKNIFLTQNGKVKLG 142

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK-KKKKIMRKEEN 218
            +++  E++ E+E  +E E++   + + E K++K++E  K K +K   K E 
Sbjct: 92  SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEP 143

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 16/104 (15%)

Query: 36  LTQLEHPNIVK----FHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSA 91
           L   EHPNIV+     H   TD       +  + E++    L  +L +      K  L  
Sbjct: 55  LESFEHPNIVRLLDVCHGPRTDRELK---LTLVFEHVDQ-DLATYLSK----CPKPGLPP 106

Query: 92  WK-RWCS-QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
              +    Q+L  + +LHS    I+H +L    I +  +G VKI
Sbjct: 107 ETIKDLMRQLLRGVDFLHSHR--IVHRDLKPQNILVTSDGQVKI 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 24/75 (32%), Positives = 39/75 (52%)

Query: 144 NKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEK 203
            KK+L    + Y +   G  +I  + ++  E+ ++ E ++EEE +K  KE  E  K+ E 
Sbjct: 140 KKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEA 199

Query: 204 EKKKKKKKIMRKEEN 218
           EKKK+ K    KE  
Sbjct: 200 EKKKQSKNFDPKEGP 214

Length = 1437

>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
            K  E+   EE E     KEEE  + EK++ KKKK
Sbjct: 162 AKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196

This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs). SH3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of SH3, AAPs are retained in the ER. Length = 196

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)

Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   + +T+ N +++        C  +L AL YLHS    +IH ++  D+I
Sbjct: 96  LMEFLQGGALTDIVSQTRLNEEQIATV-----CESVLQALCYLHSQG--VIHRDIKSDSI 148

Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTE 174
            +  +G VK+    +   I   K +   +   G P     E++++T   TE
Sbjct: 149 LLTLDGRVKLSDFGFCAQIS--KDVPKRKSLVGTPYWMAPEVISRTPYGTE 197

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 2   DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRV 61
             E+G + V  E+  S+    K +EE  ++V   L+ ++HPNIV++   + +  N    +
Sbjct: 21  SKEDGKQYVIKEINISKMSP-KEREESRKEV-AVLSNMKHPNIVQYQESFEENGN----L 74

Query: 62  IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCD 121
             + +Y   G L  + K   +     P      W  QI  AL ++H     I+H ++   
Sbjct: 75  YIVMDYCEGGDL--YKKINAQRGVLFPEDQILDWFVQICLALKHVH--DRKILHRDIKSQ 130

Query: 122 TIFIQHNGLVKIG 134
            IF+  +G +K+G
Sbjct: 131 NIFLTKDGTIKLG 143

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 34  ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV--KKLPLSA 91
           E L  L+H NIVK+          +  +  + EY+  GSL+ +L++ +  +  +KL L A
Sbjct: 57  EILKSLQHDNIVKYKGVCYSA--GRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYA 114

Query: 92  WKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
                 QI   + YL S     +H +L    I ++    VKIG
Sbjct: 115 S-----QICKGMEYLGSKR--YVHRDLATRNILVESENRVKIG 150

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 20/118 (16%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L +L HPNIV+      D  + + ++  + E++    LK+++  +      L     K +
Sbjct: 52  LKELNHPNIVRLL----DVVHSENKLYLVFEFLDL-DLKKYMDSSPLT--GLDPPLIKSY 104

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG-----------CDTYTHTI 142
             Q+L  ++Y HS    ++H +L    + I   G +K+              TYTH +
Sbjct: 105 LYQLLQGIAYCHSHR--VLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEV 160

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 36  LTQLEHPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR 94
           L Q + P IVK++  Y+ +T      +  + EY  +GS+   +K T + + +  ++A   
Sbjct: 52  LKQCDSPYIVKYYGSYFKNTD-----LWIVMEYCGAGSVSDIMKITNKTLTEEEIAAI-- 104

Query: 95  WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
              Q L  L YLHS     IH ++    I +   G  K+
Sbjct: 105 -LYQTLKGLEYLHSNK--KIHRDIKAGNILLNEEGQAKL 140

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 38  QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCS 97
           Q +HPNI+      T     +P V+ ITE+M +G+L  FL++       + L    R   
Sbjct: 61  QFDHPNIIHLEGVVT---KSRP-VMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR--- 113

Query: 98  QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            I + + YL   +   +H +L    I +  N + K+
Sbjct: 114 GIAAGMKYLSEMN--YVHRDLAARNILVNSNLVCKV 147

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
           KT   ++K   K  E++E++K+K K ++  +  K   K++K   
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSG 430

Length = 434

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   +  T+ N +++        C  +L ALSYLH+    +IH ++  D+I
Sbjct: 97  VMEFLEGGALTDIVTHTRMNEEQIATV-----CLSVLRALSYLHNQG--VIHRDIKSDSI 149

Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
            +  +G +K+     C   +  +  +K L  T
Sbjct: 150 LLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGT 181

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           +T L HPN+V+            P  I +TEYM+ GSL  +L+   R V  + L+    +
Sbjct: 54  MTTLRHPNLVQLLGVVLQ---GNPLYI-VTEYMAKGSLVDYLRSRGRAV--ITLAQQLGF 107

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
              +   + YL       +H +L    + +  + + K+
Sbjct: 108 ALDVCEGMEYLE--EKNFVHRDLAARNVLVSEDLVAKV 143

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 59  PRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQIL-SALSYLHSCSPPIIHGN 117
              I + E++  G L   L++ K  V      AWK   +Q L SALSYL   +  ++HGN
Sbjct: 89  SENIMVEEFVEHGPLDVCLRKEKGRVP----VAWKITVAQQLASALSYLEDKN--LVHGN 142

Query: 118 LTCDTIFIQHNGL 130
           +    I +   GL
Sbjct: 143 VCAKNILLARLGL 155

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 274

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFIT-EYMSSGSLKQFLKRTKRNVK 85
           E IQQ    L +  HPNIV +   +     DK   ++I  EY   GSL+   + T+  + 
Sbjct: 45  EIIQQEISMLKECRHPNIVAYFGSY--LRRDK---LWIVMEYCGGGSLQDIYQVTRGPLS 99

Query: 86  KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
           +L ++     C + L  L+YLH      IH ++    I +  +G VK+ 
Sbjct: 100 ELQIA---YVCRETLKGLAYLHETG--KIHRDIKGANILLTEDGDVKLA 143

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + +L+H NIV+ H    D  + + +++ + EYM    LK+++  T      L  +  K +
Sbjct: 52  MKELKHENIVRLH----DVIHTENKLMLVFEYM-DKDLKKYMD-THGVRGALDPNTVKSF 105

Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             Q+L  +++ H     ++H +L    + I   G +K+ 
Sbjct: 106 TYQLLKGIAFCHENR--VLHRDLKPQNLLINKRGELKLA 142

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
           Y    K      ++ EK ++E EEK+K K ++++ KK+K+K+K KK  K   K E 
Sbjct: 57  YTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEK 112

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 23  KAQEEKIQQVF----ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
           K ++E +Q  F    +   +L H N+V+      +    +P  + I EY   G LKQFL+
Sbjct: 45  KTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREA---EPHYM-ILEYTDLGDLKQFLR 100

Query: 79  RTKRNVKKL---PLSAWKR--WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            TK   +KL   PLS  ++   C+QI   + +L +     +H +L      +     VK+
Sbjct: 101 ATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNAR--FVHRDLAARNCLVSSQREVKV 158

Query: 134 GCDTYTHTIENKKY 147
              + +  + N +Y
Sbjct: 159 SLLSLSKDVYNSEY 172

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 13/115 (11%)

Query: 23  KAQEEKIQQVFEN---LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
           K   EK Q + +    L QL HPN +++   +   H        + EY   GS    L+ 
Sbjct: 53  KQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHT----AWLVMEY-CLGSASDILEV 107

Query: 80  TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            K+ ++++ ++A    C   L  L+YLHS     IH ++    I +   G VK+ 
Sbjct: 108 HKKPLQEVEIAAI---CHGALQGLAYLHSHE--RIHRDIKAGNILLTEPGTVKLA 157

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 18/37 (48%), Positives = 34/37 (91%)

Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
             E+++E+E+E++EE+K++++EE E++KE+E+EKKKK
Sbjct: 439 KKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 15/54 (27%), Positives = 34/54 (62%)

Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
           E   K     E+++++E +E++E+KKK++ E +  K   +E++K ++K  +K+ 
Sbjct: 267 EEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEE-EEKKKEKEKEKKKKKKKI 212
           T+  +  E ++E   E + E K+KKK E  + K EKEK K + KK  
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 156 GRPISGQYEIVTKTNNVTEKKKEKEEE------EEEEKKKKKKEEEEKKKEKEKEKKKKK 209
            +   G+ EI     ++ E+ K+ +E       +++E K  +K E++ +K K K +KKK 
Sbjct: 35  KKGKKGELEIT----DLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKA 90

Query: 210 KKIMRK 215
           KK   K
Sbjct: 91  KKEEPK 96

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 17/57 (29%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 155 YGRPISGQYEIVTKTNNVTEK-KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
           Y  P++   ++  K     EK K+E E++  EE++++K++E+E+++E+E+E ++  K
Sbjct: 568 YFTPLASS-KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
            +KK ++EE E+   KKK E   KK +    + KK 
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR- 94
           L  L H NI+       +   + P V++   YM+ G+LK FL++ +      P +   + 
Sbjct: 62  LYGLSHQNILPILHVCIEDG-EPPFVLY--PYMNWGNLKLFLQQCRLGEANNPQALSTQQ 118

Query: 95  ---WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
                 QI   +SYLH     +IH ++      I     VKI  D
Sbjct: 119 LVHMAIQIACGMSYLHKRG--VIHKDIAARNCVIDEELQVKI-TD 160

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
              + ++K   EEE ++KKKKEE+ K+KE +K K  +K+   + + 
Sbjct: 4   TESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQA 49

Length = 1066

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
           E+KK+ EE  ++   K+K+ EE   K     K K + +  R   
Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAA 158

Length = 387

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 16/104 (15%)

Query: 52  TDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-NVKKLPLSAWKRWCSQILSALSYLHSCS 110
            +  N KP +  + EY+ S  LK+F+    R   + LP    K +  Q+L  +++ H   
Sbjct: 72  VEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG 130

Query: 111 PPIIHGNLTCDTIFI-QHNGLVKIG-----------CDTYTHTI 142
             ++H +L    + + +  GL+KI              +YTH I
Sbjct: 131 --VMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEI 172

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
           +K +K  EEEEEK  K  EEE  ++E+ +EKK++KKK  R+ + 
Sbjct: 259 RKVDKTREEEEEKILKAAEEE--RQEEAQEKKEEKKKEEREAKL 300

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFIT-EYMSSGSLKQFLKRTKRNVKKLPLSAWKR 94
           ++Q  HPN+VK++  +          +++   Y+S GSL   +K +      L  +    
Sbjct: 53  MSQCNHPNVVKYYTSFVVGD-----ELWLVMPYLSGGSLLDIMK-SSYPRGGLDEAIIAT 106

Query: 95  WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
              ++L  L YLHS     IH ++    I +  +G VKI 
Sbjct: 107 VLKEVLKGLEYLHSNG--QIHRDIKAGNILLGEDGSVKIA 144

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 44/165 (26%)

Query: 28  KIQQVF---ENLTQLEHPNIVK-FHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN 83
           +IQQVF   + LT  E+P +V  F  + T  H     +  + EY+  G     LK    N
Sbjct: 44  QIQQVFVERDILTFAENPFVVSMFCSFETKRH-----LCMVMEYVEGGDCATLLK----N 94

Query: 84  VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN--------GLVKIG- 134
           +  LP+   + + ++ + AL YLH+    I+H +L  D + I           GL KIG 
Sbjct: 95  IGALPVDMARMYFAETVLALEYLHNYG--IVHRDLKPDNLLITSMGHIKLTDFGLSKIGL 152

Query: 135 ----CDTYTHTIENK------KYLSAT----------RQTYGRPI 159
                + Y   IE        K +  T          RQ YG+P+
Sbjct: 153 MSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPV 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
            K  +  E++KEKE+ +EE+KKKK+K +EE K  K KE+ K+K+    KE+
Sbjct: 98  PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
           K +    Q   + L  L HPNI++   Y+ +   DK  +I + EY   G+L +++++   
Sbjct: 40  KDERLAAQNECQVLKLLSHPNIIE---YYENFLEDKALMI-VMEYAPGGTLAEYIQKRCN 95

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI-QHNGLVKIG 134
           ++  L       +  QIL AL ++H  +  I+H +L    I + +H  +VKIG
Sbjct: 96  SL--LDEDTILHFFVQILLALHHVH--TKLILHRDLKTQNILLDKHKMVVKIG 144

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 14/37 (37%), Positives = 28/37 (75%)

Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
            E K ++E+ ++EE +KK+KE+ ++ KEK ++ ++KK
Sbjct: 398 AEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434

Length = 434

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
           +   K   V ++    EE E + K++K K+EE +KK+KE+  + K+K+
Sbjct: 380 DYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKR 427

Length = 434

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 172  VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
            V E+ K++EE+E  E  ++ KEEE  KKEKE+E++ +K  
Sbjct: 1022 VKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTI 1061

Length = 1077

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG0595|consensus	429		100.0
KOG0615|consensus	475		100.0
KOG0598|consensus	357		100.0
KOG0581|consensus	364		100.0
KOG0575|consensus	592		100.0
KOG0616|consensus	355		100.0
KOG0192|consensus	362		100.0
KOG0611|consensus	668		100.0
KOG1187|consensus	361		100.0
KOG0591|consensus	375		100.0
KOG0600|consensus	560		100.0
KOG0592|consensus	604		100.0
KOG0593|consensus	396		100.0
KOG0583|consensus	370		100.0
KOG0588|consensus	786		100.0
KOG0605|consensus	550		99.97
KOG0582|consensus	516		99.97
KOG0198|consensus	313		99.97
KOG0659|consensus	318		99.97
KOG0599|consensus	411		99.97
KOG0597|consensus	808		99.97
KOG0594|consensus	323		99.97
KOG0694|consensus	694		99.97
KOG0663|consensus	419		99.97
KOG0610|consensus	459		99.97
KOG0661|consensus	538		99.97
KOG0578|consensus	550		99.97
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.97
KOG0585|consensus	576		99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.97
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.97
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.97
KOG0580|consensus	281		99.97
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.97
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.97
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.97
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.96
KOG0584|consensus	632		99.96
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.96
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.96
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.96
KOG0660|consensus	359		99.96
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.96
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.96
KOG0586|consensus	596		99.96
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.96
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.96
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.96
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.96
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.96
KOG4717|consensus	864		99.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.96
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.96
KOG0658|consensus	364		99.96
PTZ00267	478	NIMA-related protein kinase; Provisional	99.96
KOG0197|consensus	468		99.96
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.96
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.96
KOG0986|consensus	591		99.96
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.96
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.96
PHA02988	283	hypothetical protein; Provisional	99.96
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.96
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.96
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.96
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.96
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.96
KOG0690|consensus	516		99.96
KOG0032|consensus	382		99.96
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.96
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.96
KOG0607|consensus	463		99.96
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.96
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.96
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.96
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.96
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
KOG0033|consensus	355		99.96
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.96
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.95
KOG4721|consensus	904		99.95
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.95
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.95
PTZ00283	496	serine/threonine protein kinase; Provisional	99.95
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.95
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.95
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.95
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.95
KOG0589|consensus	426		99.95
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.95
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.95
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.95
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.95
KOG0667|consensus	586		99.95
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.95
KOG4236|consensus	888		99.95
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.95
KOG4250|consensus	732		99.95
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.95
PHA03212	391	serine/threonine kinase US3; Provisional	99.95
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.95
PTZ00036	440	glycogen synthase kinase; Provisional	99.95
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.95
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.95
KOG0612|consensus	1317		99.95
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.95
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.95
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.95
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.95
KOG0193|consensus	678		99.95
KOG0577|consensus	948		99.94
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.94
KOG0194|consensus	474		99.94
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.94
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.94
KOG0574|consensus	502		99.94
KOG0201|consensus	467		99.94
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.94
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.94
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.94
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.94
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.94
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.94
KOG0604|consensus	400		99.94
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.94
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.94
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.94
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.94
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.94
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.94
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.94
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.94
KOG1989|consensus	738		99.94
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.94
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.94
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.94
KOG0608|consensus	1034		99.94
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.94
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.94
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.94
KOG1026|consensus	774		99.94
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.94
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.94
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.94
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.94
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.94
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.94
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.94
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.94
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.94
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.94
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.94
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.94
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.94
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.94
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.94
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.94
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.94
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.94
KOG2345|consensus	302		99.94
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.94
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.94
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.94
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.94
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.94
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.94
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.93
PHA03207	392	serine/threonine kinase US3; Provisional	99.93
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.93
KOG4645|consensus	1509		99.93
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.93
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.93
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.93
KOG4279|consensus	1226		99.93
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.93
KOG0614|consensus	732		99.93
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.93
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.93
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.93
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.93
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.93
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.93
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.93
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.93
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.93
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.93
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.93
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.93
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.93
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.93
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.93
PTZ00284	467	protein kinase; Provisional	99.93
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.93
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.93
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.93
KOG0984|consensus	282		99.93
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.93
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.93
KOG0696|consensus	683		99.93
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.93
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.93
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.93
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.93
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.93
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.93
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.93
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.93
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.93
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.93
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.93
KOG0662|consensus	292		99.93
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.93
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.93
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.93
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.93
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.93
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.93
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.93
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.93
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.93
KOG0579|consensus	1187		99.93
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.93
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.93
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.93
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.93
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.93
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.93
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.93
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.93
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.93
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.93
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.93
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.93
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.93
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.93
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.93
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.93
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.93
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.93
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.93
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.93
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.93
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.93
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.93
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.93
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.93
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.93
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.93
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.93
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.93
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.93
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.93
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.93
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.92
KOG0666|consensus	438		99.92
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.92
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.92
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.92
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.92
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.92
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.92
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.92
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.92
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.92
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.92
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.92
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.92
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.92
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.92
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.92
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.92
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.92
KOG1151|consensus	775		99.92
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.92
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.92
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.92
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.92
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.92
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.92
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.92
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.92
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.92
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.92
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.92
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.92
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.92
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.92
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.92
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.92
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.92
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.92
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.92
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.92
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.92
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.92
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.92
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.92
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.92
PHA03211	461	serine/threonine kinase US3; Provisional	99.92
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.92
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.92
PLN00009	294	cyclin-dependent kinase A; Provisional	99.92
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.92
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.92
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.92
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.92
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.92
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.92
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.92
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.92
KOG1006|consensus	361		99.92
KOG0196|consensus	996		99.92
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.92
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.92
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.92
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.92
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.92
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.92
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.92
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.92
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.92
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.91
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.91
PHA03209	357	serine/threonine kinase US3; Provisional	99.91
KOG1094|consensus	807		99.91
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.91
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.91
KOG3653|consensus	534		99.91
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.91
KOG0983|consensus	391		99.91
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.91
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.91
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.91
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.91
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.91
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.91
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.91
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.91
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.91
KOG0695|consensus	593		99.91
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.91
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.91
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.91
KOG0669|consensus	376		99.91
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.91
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.91
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.91
KOG1035|consensus	1351		99.91
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.91
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.91
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.91
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.9
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.9
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.9
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.9
KOG0670|consensus	752		99.9
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.9
KOG2052|consensus	513		99.9
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.9
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.9
KOG1152|consensus	772		99.9
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.9
KOG1095|consensus	1025		99.9
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.9
KOG4257|consensus	974		99.9
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.9
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.9
KOG0587|consensus	953		99.9
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.9
PHA03210	501	serine/threonine kinase US3; Provisional	99.89
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.89
KOG0671|consensus	415		99.89
KOG0603|consensus	612		99.89
KOG4278|consensus	1157		99.88
PHA02882	294	putative serine/threonine kinase; Provisional	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.88
KOG0665|consensus	369		99.88
KOG1027|consensus	903		99.88
KOG0596|consensus	677		99.88
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.88
KOG0664|consensus	449		99.87
PRK09188	365	serine/threonine protein kinase; Provisional	99.85
KOG0668|consensus	338		99.85
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.85
KOG1290|consensus	590		99.85
KOG0199|consensus	1039		99.85
KOG0576|consensus	829		99.83
KOG0200|consensus	609		99.82
KOG1345|consensus	378		99.82
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.82
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.82
KOG1025|consensus	1177		99.81
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.8
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.8
PRK10345	210	hypothetical protein; Provisional	99.8
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.78
PLN00181	793	protein SPA1-RELATED; Provisional	99.77
PRK12274	218	serine/threonine protein kinase; Provisional	99.76
KOG1167|consensus	418		99.76
KOG1163|consensus	341		99.74
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.73
KOG1164|consensus	322		99.72
smart00090	237	RIO RIO-like kinase.	99.7
PRK14879	211	serine/threonine protein kinase; Provisional	99.68
KOG1165|consensus	449		99.67
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.66
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.66
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.63
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.63
KOG1266|consensus	458		99.62
KOG0590|consensus	601		99.61
KOG4158|consensus	598		99.61
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.6
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.55
KOG0603|consensus	612		99.55
KOG1024|consensus	563		99.51
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.5
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.48
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.48
KOG0195|consensus	448		99.43
KOG1166|consensus	974		99.37
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.37
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.32
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.29
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.25
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.23
KOG1243|consensus	690		99.23
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.22
KOG1023|consensus	484		99.2
KOG1240|consensus	1431		99.18
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.18
KOG3087|consensus	229		99.15
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	99.11
KOG1033|consensus	516		99.03
KOG3741|consensus	655		99.01
KOG0590|consensus	601		98.99
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.95
KOG0606|consensus	1205		98.92
PRK09902	216	hypothetical protein; Provisional	98.8
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.7
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.59
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.58
KOG0601|consensus	524		98.55
KOG0601|consensus	524		98.49
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.39
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.33
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.27
KOG0606|consensus	1205		98.24
PF01636	239	APH: Phosphotransferase enzyme family This family	98.17
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.05
COG4248	637	Uncharacterized protein with protein kinase and he	97.96
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.94
PLN02876	822	acyl-CoA dehydrogenase	97.92
KOG2270|consensus	520		97.72
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.71
KOG1235|consensus	538		97.69
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	97.64
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.59
KOG2268|consensus	465		97.56
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.4
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	97.33
PRK05231	319	homoserine kinase; Provisional	97.26
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.26
KOG2137|consensus	700		97.18
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.1
PRK10593	297	hypothetical protein; Provisional	97.02
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.02
PRK06148	1013	hypothetical protein; Provisional	96.95
PLN02236	344	choline kinase	96.9
PRK09550	401	mtnK methylthioribose kinase; Reviewed	96.9
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	96.82
KOG0576|consensus	829		96.7
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	96.59
PLN02756	418	S-methyl-5-thioribose kinase	96.53
KOG1236|consensus	565		96.11
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	96.08
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	95.78
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	95.63
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	95.63
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	95.59
PF07914	414	DUF1679: Protein of unknown function (DUF1679); In	95.49
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	95.46
KOG1035|consensus	1351		95.37
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	95.36
PRK10271	188	thiK thiamine kinase; Provisional	95.14
PTZ00384	383	choline kinase; Provisional	94.66
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	94.3
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	94.26
PHA03111	444	Ser/Thr kinase; Provisional	94.2
COG2334	331	Putative homoserine kinase type II (protein kinase	94.09
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	94.04

>KOG0595|consensus

Probab=100.00  E-value=1.8e-37  Score=251.49  Aligned_cols=168  Identities=22%  Similarity=0.291  Sum_probs=146.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ++.+|..||||.+...  .......+.+..||.+|+.++|||||.+++++.+.+    ++|+|||||.||+|.+|++.+.
T Consensus        31 h~~~~~~VAIK~i~~~--~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~----~i~lVMEyC~gGDLs~yi~~~~  104 (429)
T KOG0595|consen   31 HKKSGTEVAIKCIAKK--KLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDD----FIYLVMEYCNGGDLSDYIRRRG  104 (429)
T ss_pred             eccCCceEEeeeehhh--ccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCC----eEEEEEEeCCCCCHHHHHHHcC
Confidence            4578899999999854  224677888999999999999999999999998865    6999999999999999999875


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC------CcEEEeecCcccc-------ccCCCcc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN------GLVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~------~~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      +    +++.+++.++.||+.||.+||+  ++||||||||+|||++..      -.+||+|||+++.       .+.+|++
T Consensus       105 ~----l~e~t~r~Fm~QLA~alq~L~~--~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSp  178 (429)
T KOG0595|consen  105 R----LPEATARHFMQQLASALQFLHE--NNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSP  178 (429)
T ss_pred             C----CCHHHHHHHHHHHHHHHHHHHH--CCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCc
Confidence            4    9999999999999999999999  889999999999999765      5689999999987       6789999


Q ss_pred             cccccccCC--CCch----------hhhhhhCCCCCCcchhhhhH
Q psy238          149 SATRQTYGR--PISG----------QYEIVTKTNNVTEKKKEKEE  181 (218)
Q Consensus       149 ~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~ee~~  181 (218)
                      -|||||+..  .++.          +|++++|+.||+....+|-.
T Consensus       179 lYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~  223 (429)
T KOG0595|consen  179 LYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELL  223 (429)
T ss_pred             cccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHH
Confidence            999999842  3333          79999999999977666543

>KOG0615|consensus

Probab=100.00  E-value=7.6e-37  Score=248.03  Aligned_cols=167  Identities=21%  Similarity=0.251  Sum_probs=139.3

Q ss_pred             CCCCCCcEEEEEEeeccccccc---HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHH
Q psy238            1 MDTEEGVEVVWNEVQFSERKNF---KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~---~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +++.||+.||||+++.......   ......+.+|+++|++++|||||+++++|..+.    ..||||||+.||.|.+++
T Consensus       192 ~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d----s~YmVlE~v~GGeLfd~v  267 (475)
T KOG0615|consen  192 YEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD----SSYMVLEYVEGGELFDKV  267 (475)
T ss_pred             EEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC----ceEEEEEEecCccHHHHH
Confidence            3578999999999986432221   123445789999999999999999999998876    479999999999999999


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC---CcEEEeecCcccc-------ccCCCc
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN---GLVKIGCDTYTHT-------IENKKY  147 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~---~~~ki~dfg~~~~-------~~~~~t  147 (218)
                      ....    .+.+.....++.|++.|+.|||+  +||+||||||+|||+..+   ..+||+|||++..       .+.+||
T Consensus       268 v~nk----~l~ed~~K~~f~Qll~avkYLH~--~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGT  341 (475)
T KOG0615|consen  268 VANK----YLREDLGKLLFKQLLTAVKYLHS--QGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGT  341 (475)
T ss_pred             Hhcc----ccccchhHHHHHHHHHHHHHHHH--cCcccccCCcceEEeccCCcceEEEecccchhhccccceehhhhcCC
Confidence            8764    48888999999999999999999  889999999999999765   8999999999875       688999


Q ss_pred             ccccccccC----CCCch-----------hhhhhhCCCCCCcchh
Q psy238          148 LSATRQTYG----RPISG-----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       148 ~~y~aPE~~----~~~~~-----------~~ei~tg~~p~~~~~~  177 (218)
                      +.|.|||+.    ...++           +|-++||-.||.+...
T Consensus       342 psYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~  386 (475)
T KOG0615|consen  342 PSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYT  386 (475)
T ss_pred             ccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccC
Confidence            999999972    22222           6778899999975443

>KOG0598|consensus

Probab=100.00  E-value=3.2e-36  Score=241.70  Aligned_cols=175  Identities=18%  Similarity=0.241  Sum_probs=149.3

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..||+.||+|+++...... ........+|..||..++||+||.++..|++..    ++|||++|+.||.|...|.+.+ 
T Consensus        47 ~dt~kiYAmKvl~K~~iv~-~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~----kLylVld~~~GGeLf~hL~~eg-  120 (357)
T KOG0598|consen   47 KDTGKIYAMKVLKKKKIVE-KKEVRHTKAERNILSKIKHPFIVKLIYSFQTEE----KLYLVLDYLNGGELFYHLQREG-  120 (357)
T ss_pred             cccCceeehhhhhhhHhhh-hhhHHHHHHHHHHHHhCCCCcEeeeEEecccCC----eEEEEEeccCCccHHHHHHhcC-
Confidence            4689999999998643332 345678899999999999999999999997754    6999999999999999999764 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                         .++++.++.|+..|+.||.|||+  .|||||||||+|||+|.+|+++|+|||++..        .+.+||+.|||||
T Consensus       121 ---~F~E~~arfYlaEi~lAL~~LH~--~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPE  195 (357)
T KOG0598|consen  121 ---RFSEDRARFYLAEIVLALGYLHS--KGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPE  195 (357)
T ss_pred             ---CcchhHHHHHHHHHHHHHHHHHh--CCeeeccCCHHHeeecCCCcEEEeccccchhcccCCCccccccCCccccChH
Confidence               49999999999999999999999  7799999999999999999999999999874        5679999999999


Q ss_pred             c--CCCCch----------hhhhhhCCCCCCcchhhhhHHHHHHHH
Q psy238          155 Y--GRPISG----------QYEIVTKTNNVTEKKKEKEEEEEEEKK  188 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~tg~~p~~~~~~ee~~~~~~~~~  188 (218)
                      +  ..+++.          +|||++|.+||.+....+..+.-...+
T Consensus       196 il~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k  241 (357)
T KOG0598|consen  196 ILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGK  241 (357)
T ss_pred             HHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCc
Confidence            7  223222          799999999999888766655544433

>KOG0581|consensus

Probab=100.00  E-value=1.7e-35  Score=237.60  Aligned_cols=163  Identities=21%  Similarity=0.246  Sum_probs=142.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..||..+|+|.+..   .........+.+|++++..++||+||.+|+.|.+.+.   .++++||||++|||++++... 
T Consensus       100 Hk~t~~i~AlK~I~~---~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~---~isI~mEYMDgGSLd~~~k~~-  172 (364)
T KOG0581|consen  100 HKPTGKIYALKVILL---NIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGE---EISICMEYMDGGSLDDILKRV-  172 (364)
T ss_pred             EcCCCeEEEEEeecc---cCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCc---eEEeehhhcCCCCHHHHHhhc-
Confidence            567999999999964   3347788899999999999999999999999988652   499999999999999999876 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                         +++++...-.++.+|+.||.|||.. ++||||||||+|||++..|.+||||||.+..      .+..||..|||||.
T Consensus       173 ---g~i~E~~L~~ia~~VL~GL~YLh~~-~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPER  248 (364)
T KOG0581|consen  173 ---GRIPEPVLGKIARAVLRGLSYLHEE-RKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTFVGTSAYMSPER  248 (364)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHhhc-cCeeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccccccccccChhh
Confidence               3499999999999999999999952 5699999999999999999999999999876      78899999999996


Q ss_pred             --CCCCch----------hhhhhhCCCCCCcc
Q psy238          156 --GRPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       156 --~~~~~~----------~~ei~tg~~p~~~~  175 (218)
                        +..++.          +.|+++|+.||...
T Consensus       249 i~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~  280 (364)
T KOG0581|consen  249 ISGESYSVKSDIWSLGLSLLELAIGRFPYPPP  280 (364)
T ss_pred             hcCCcCCcccceecccHHHHHHhhCCCCCCCc
Confidence              333333          68999999999764

>KOG0575|consensus

Probab=100.00  E-value=1.5e-35  Score=250.31  Aligned_cols=168  Identities=27%  Similarity=0.303  Sum_probs=147.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++..+... .....+.+.+||+|.+.|.|||||+++++|+++.    ++|||+|+|..++|..++..+ 
T Consensus        39 ~~~tge~~A~KvVpk~~l~-k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~----nVYivLELC~~~sL~el~Krr-  112 (592)
T KOG0575|consen   39 DLDTGEVVAVKVVPKKLLK-KPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSN----NVYIVLELCHRGSLMELLKRR-  112 (592)
T ss_pred             EcCCCcEEEEEEeehHHhc-CcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCC----ceEEEEEecCCccHHHHHHhc-
Confidence            5789999999999964333 3667889999999999999999999999999876    599999999999999999955 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         .++++..++.+++||+.||.|||+  ++|+|||||..|+|++++.++||+|||+|..        .+.+||+.|+||
T Consensus       113 ---k~ltEpEary~l~QIv~GlkYLH~--~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAP  187 (592)
T KOG0575|consen  113 ---KPLTEPEARYFLRQIVEGLKYLHS--LGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAP  187 (592)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHHHh--cCceecccchhheeecCcCcEEecccceeeeecCcccccceecCCCcccCh
Confidence               459999999999999999999999  7799999999999999999999999999987        678999999999


Q ss_pred             ccCC------------CCchhhhhhhCCCCCCcchhhhh
Q psy238          154 TYGR------------PISGQYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       154 E~~~------------~~~~~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+..            ....+|-++.|++||..+.-++.
T Consensus       188 EVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vket  226 (592)
T KOG0575|consen  188 EVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKET  226 (592)
T ss_pred             hHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHH
Confidence            9722            11228999999999987755544

>KOG0616|consensus

Probab=100.00  E-value=2.9e-34  Score=224.57  Aligned_cols=167  Identities=18%  Similarity=0.246  Sum_probs=144.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..+|+|+++...... ....+...+|..+|+.+.||+++.+++.|.+..    ++||||+|++||-|.++++..+
T Consensus        65 ~k~~g~yYAmKvL~k~~vVk-lKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~----~lymvmeyv~GGElFS~Lrk~~  139 (355)
T KOG0616|consen   65 EKHSGNYYAMKVLDKQKVVK-LKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNS----NLYMVMEYVPGGELFSYLRKSG  139 (355)
T ss_pred             EccCCceeehhhcCHHHHHH-HHHHHHHhhHHHHHhhccCceeEEEEEeeccCC----eEEEEEeccCCccHHHHHHhcC
Confidence            35688999999998643332 456778899999999999999999999998765    6999999999999999999875


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYG  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~  156 (218)
                          +++++.++.++.||+.||+|||+  .+|++|||||+|||+|.+|.++|+|||++..     .+.+||+.|+|||+.
T Consensus       140 ----rF~e~~arFYAAeivlAleylH~--~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii  213 (355)
T KOG0616|consen  140 ----RFSEPHARFYAAEIVLALEYLHS--LDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEII  213 (355)
T ss_pred             ----CCCchhHHHHHHHHHHHHHHHHh--cCeeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHh
Confidence                49999999999999999999999  5599999999999999999999999999875     678999999999962


Q ss_pred             C--------CCch----hhhhhhCCCCCCcchhhh
Q psy238          157 R--------PISG----QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       157 ~--------~~~~----~~ei~tg~~p~~~~~~ee  179 (218)
                      .        .++.    .|||+.|..||.....-.
T Consensus       214 ~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~  248 (355)
T KOG0616|consen  214 QSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQ  248 (355)
T ss_pred             hcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHH
Confidence            1        2222    699999999998766533

>KOG0192|consensus

Probab=100.00  E-value=1.8e-33  Score=233.55  Aligned_cols=165  Identities=25%  Similarity=0.359  Sum_probs=140.9

Q ss_pred             CCCcE-EEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVE-VVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~-vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..|.. ||||++.......  .....+.+|+.+|.+++|||||+++|++.....   .+++||||+++|+|.+++...  
T Consensus        62 ~~g~~~vavK~~~~~~~~~--~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~---~~~iVtEy~~~GsL~~~l~~~--  134 (362)
T KOG0192|consen   62 WRGTDVVAVKIISDPDFDD--ESRKAFRREASLLSRLRHPNIVQFYGACTSPPG---SLCIVTEYMPGGSLSVLLHKK--  134 (362)
T ss_pred             eCCceeEEEEEecchhcCh--HHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC---ceEEEEEeCCCCcHHHHHhhc--
Confidence            45777 9999998543322  227899999999999999999999999987541   489999999999999999884  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-cccCCCCCCcEEEecCC-cEEEeecCcccc--------ccCCCcccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPP-IIHGNLTCDTIFIQHNG-LVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~-iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      ....+++..+..|+.||+.||.|||+  .+ ||||||||+|||++.++ ++||+|||+++.        ....||+.|||
T Consensus       135 ~~~~l~~~~~l~~aldiArGm~YLH~--~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMA  212 (362)
T KOG0192|consen  135 RKRKLPLKVRLRIALDIARGMEYLHS--EGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMA  212 (362)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHhc--CCCeeecccChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccC
Confidence            22569999999999999999999999  77 99999999999999997 999999999965        22689999999


Q ss_pred             cccCC----CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR----PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~----~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+..    .++.          ++||+||+.||.....
T Consensus       213 PEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~  251 (362)
T KOG0192|consen  213 PEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP  251 (362)
T ss_pred             hhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH
Confidence            99855    2333          7999999999987665

>KOG0611|consensus

Probab=100.00  E-value=6.8e-34  Score=231.14  Aligned_cols=164  Identities=21%  Similarity=0.370  Sum_probs=146.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +-..|+.||||.+......+ ......+.+||+||+.++||||+.+|.+|...+    .+.+||||..+|.|.+|+..+.
T Consensus        74 e~~sgR~VAiKsIrKdkIkd-eqDlvhIRREIeIMSsLNHPhII~IyEVFENkd----KIvivMEYaS~GeLYDYiSer~  148 (668)
T KOG0611|consen   74 EHKSGREVAIKSIRKDKIKD-EQDLVHIRREIEIMSSLNHPHIIQIYEVFENKD----KIVIVMEYASGGELYDYISERG  148 (668)
T ss_pred             hccCCcEeehhhhhhhhccc-HHHHHHHHHHHHHHhhcCCCceeehhhhhcCCc----eEEEEEEecCCccHHHHHHHhc
Confidence            34679999999998544333 567778999999999999999999999997765    5999999999999999999885


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      .    +++..++.+|+||++|+.|||.  ++++|||||.+|||+|.+++++|+|||++..       .+.+|++-|.+||
T Consensus       149 ~----LsErEaRhfFRQIvSAVhYCHk--nrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPE  222 (668)
T KOG0611|consen  149 S----LSEREARHFFRQIVSAVHYCHK--NRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQTFCGSPLYASPE  222 (668)
T ss_pred             c----ccHHHHHHHHHHHHHHHHHHhh--ccceecccchhheeecCCCCeeeeccchhhhhccccHHHHhcCCcccCCcc
Confidence            4    9999999999999999999999  8899999999999999999999999999875       7899999999999


Q ss_pred             c--CCCCch-----------hhhhhhCCCCCCcch
Q psy238          155 Y--GRPISG-----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~--~~~~~~-----------~~ei~tg~~p~~~~~  176 (218)
                      +  |.++..           +|-++.|.-||++..
T Consensus       223 IvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~D  257 (668)
T KOG0611|consen  223 IVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRD  257 (668)
T ss_pred             ccCCCCCCCCccchhhHHHHHHHHhhcccccCCch
Confidence            7  555544           799999999999764

>KOG1187|consensus

Probab=100.00  E-value=5.4e-33  Score=231.59  Aligned_cols=164  Identities=23%  Similarity=0.383  Sum_probs=138.2

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||||.+.....   .. ...|.+|+.+|.+++|||+|+|+|||.+.+.   ..++|+||+++|||.++|......
T Consensus        97 ~~~~~vAVK~~~~~~~---~~-~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~---~~~LVYEym~nGsL~d~L~~~~~~  169 (361)
T KOG1187|consen   97 SDGTVVAVKRLSSNSG---QG-EREFLNEVEILSRLRHPNLVKLLGYCLEGGE---HRLLVYEYMPNGSLEDHLHGKKGE  169 (361)
T ss_pred             CCCCEEEEEEecCCCC---cc-hhHHHHHHHHHhcCCCcCcccEEEEEecCCc---eEEEEEEccCCCCHHHHhCCCCCC
Confidence            4568999998874321   11 4459999999999999999999999987542   489999999999999999986532


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCccccccC---------CCccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIEN---------KKYLSATRQ  153 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~~---------~~t~~y~aP  153 (218)
                        +++|..+..|+.+++.||.|||+ +...||||||||+|||+|+++.+||+|||++.....         .||++|+||
T Consensus       170 --~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~P  247 (361)
T KOG1187|consen  170 --PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAP  247 (361)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCCh
Confidence              79999999999999999999999 645799999999999999999999999999876555         899999999


Q ss_pred             ccCCC--Cch----------hhhhhhCCCCCCcch
Q psy238          154 TYGRP--ISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~~--~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+...  .+.          +.|++||+.+++...
T Consensus       248 Ey~~~g~lt~KsDVySFGVvllElitgr~~~d~~~  282 (361)
T KOG1187|consen  248 EYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSR  282 (361)
T ss_pred             hhhccCCcCcccccccchHHHHHHHhCCcccCCCC
Confidence            98431  221          679999999998654

>KOG0591|consensus

Probab=100.00  E-value=2.6e-34  Score=223.70  Aligned_cols=174  Identities=20%  Similarity=0.208  Sum_probs=148.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ++.+|..||+|.++.....  ....+.+..|+.+|++++|||||+++++....++  ..+++|||+|.+|+|...+....
T Consensus        40 ~~~~g~l~a~K~i~f~~md--~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~--evlnivmE~c~~GDLsqmIk~~K  115 (375)
T KOG0591|consen   40 CLLDGKLVALKKIQFGMMD--AKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDN--EVLNIVMELCDAGDLSQMIKHFK  115 (375)
T ss_pred             eccCcchhhhhhcchhhcc--HHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccc--hhhHHHHHhhcccCHHHHHHHHH
Confidence            5789999999999965433  5677889999999999999999999985433222  24899999999999999999988


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhc--CCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHS--CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~--~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~  151 (218)
                      .....+|+.++|.++.|++.||..||+  ...-|+||||||.||+++.+|.+||+|||+++.        .+.+||+.||
T Consensus       116 ~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYM  195 (375)
T KOG0591|consen  116 KQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYM  195 (375)
T ss_pred             hccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCccc
Confidence            888889999999999999999999998  212389999999999999999999999999876        6689999999


Q ss_pred             cccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +||+  ..+++.          +|||.+-..||.+.+--+
T Consensus       196 SPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~  235 (375)
T KOG0591|consen  196 SPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLS  235 (375)
T ss_pred             CHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHH
Confidence            9997  445444          689999999998875433

>KOG0600|consensus

Probab=100.00  E-value=4.4e-33  Score=231.04  Aligned_cols=172  Identities=22%  Similarity=0.307  Sum_probs=146.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |+.||..||+|.+.+.+..  ........+||.||++|+||||++|.+...+..  .+.+|||||||+ .+|.-++....
T Consensus       138 ~~~tgkivALKKvr~d~~~--~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~--~~siYlVFeYMd-hDL~GLl~~p~  212 (560)
T KOG0600|consen  138 DLETGKIVALKKVRFDNEK--EGFPITAIREIKILRRLDHPNIIKLEEIVTSKL--SGSIYLVFEYMD-HDLSGLLSSPG  212 (560)
T ss_pred             ecccCcEEEEEEeecccCC--CcchHHHHHHHHHHHhcCCCcccceeeEEEecC--CceEEEEEeccc-chhhhhhcCCC
Confidence            7899999999999976422  445567889999999999999999999988752  357999999997 69999987643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         -.|++.++..|+.||+.||.|||+  +||+|||||.+|||||.+|.++|+|||+++.         +..+.|.||.|
T Consensus       213 ---vkft~~qIKc~mkQLl~Gl~~cH~--~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRp  287 (560)
T KOG0600|consen  213 ---VKFTEPQIKCYMKQLLEGLEYCHS--RGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRP  287 (560)
T ss_pred             ---cccChHHHHHHHHHHHHHHHHHhh--cCeeeccccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccC
Confidence               349999999999999999999999  7799999999999999999999999999984         45677999999


Q ss_pred             ccc--CC-CCch----------hhhhhhCCCCCCcchhhhhHHH
Q psy238          153 QTY--GR-PISG----------QYEIVTKTNNVTEKKKEKEEEE  183 (218)
Q Consensus       153 PE~--~~-~~~~----------~~ei~tg~~p~~~~~~ee~~~~  183 (218)
                      ||+  |. .+..          +.||++|+..|.+..+-++.+.
T Consensus       288 PELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~k  331 (560)
T KOG0600|consen  288 PELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHK  331 (560)
T ss_pred             hHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHH
Confidence            996  22 2222          7999999999999888766543

>KOG0592|consensus

Probab=100.00  E-value=1.3e-33  Score=235.87  Aligned_cols=165  Identities=22%  Similarity=0.302  Sum_probs=139.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..++.+||||++..... ........+..|-.+|..| .||+|++|+..|.|..    .+|+|++|+++|+|.++|...
T Consensus        94 ~~~t~keYAiKVl~K~~I-ike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~----sLYFvLe~A~nGdll~~i~K~  168 (604)
T KOG0592|consen   94 EKATGKEYAIKVLDKRYI-IKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEE----SLYFVLEYAPNGDLLDLIKKY  168 (604)
T ss_pred             ecCCCceeeHhhhhHHHH-HhhcccchhhHHHHHHHHhhCCCCeEEEEEEeeccc----ceEEEEEecCCCcHHHHHHHh
Confidence            577999999999984321 1133345667888899999 8999999999998865    599999999999999999988


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------------------  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------------------  141 (218)
                      +.    |++..++.|+.||+.||+|||+  +|||||||||+|||+|.|++++|+|||.+..                   
T Consensus       169 Gs----fde~caR~YAAeIldAleylH~--~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s  242 (604)
T KOG0592|consen  169 GS----FDETCARFYAAEILDALEYLHS--NGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASS  242 (604)
T ss_pred             Cc----chHHHHHHHHHHHHHHHHHHHh--cCceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccC
Confidence            54    9999999999999999999999  6699999999999999999999999997654                   


Q ss_pred             --ccCCCcccccccccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          142 --IENKKYLSATRQTYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       142 --~~~~~t~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                        .+.+||..|.+||+..  ..+.          +|.|+.|..||.+..+
T Consensus       243 ~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ne  292 (604)
T KOG0592|consen  243 RRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANE  292 (604)
T ss_pred             cccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccH
Confidence              3478999999999733  1111          7999999999987654

>KOG0593|consensus

Probab=100.00  E-value=2.1e-33  Score=220.50  Aligned_cols=168  Identities=19%  Similarity=0.268  Sum_probs=143.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..||+.||||.+.-+  .+.+.....+++||.+|+++.|||+|.|+.+|....    .+++|||||+ .++.+-+..++
T Consensus        23 nk~TgqIVAIKkF~Es--edd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkr----klhLVFE~~d-hTvL~eLe~~p   95 (396)
T KOG0593|consen   23 NKDTGQIVAIKKFVES--EDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKR----KLHLVFEYCD-HTVLHELERYP   95 (396)
T ss_pred             cCCcccEEEEEeeccC--CccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcc----eeEEEeeecc-hHHHHHHHhcc
Confidence            6789999999988744  555788889999999999999999999999997754    6999999997 57777777765


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------cCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------ENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------~~~~t~~y~aP  153 (218)
                      .   .++...+..+++|++.|+.|||+  +++|||||||+||||+.+|.++|||||+++..        ..+.|.||.||
T Consensus        96 ~---G~~~~~vk~~l~Q~l~ai~~cHk--~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaP  170 (396)
T KOG0593|consen   96 N---GVPSELVKKYLYQLLKAIHFCHK--NNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAP  170 (396)
T ss_pred             C---CCCHHHHHHHHHHHHHHhhhhhh--cCeecccCChhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccCh
Confidence            3   49999999999999999999999  88999999999999999999999999999873        34668999999


Q ss_pred             cc--C-----CCCch------hhhhhhCCCCCCcchhhhhH
Q psy238          154 TY--G-----RPISG------QYEIVTKTNNVTEKKKEKEE  181 (218)
Q Consensus       154 E~--~-----~~~~~------~~ei~tg~~p~~~~~~ee~~  181 (218)
                      |+  |     .+++.      ..||++|.+-|.+.++-.+.
T Consensus       171 ELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQL  211 (396)
T KOG0593|consen  171 ELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQL  211 (396)
T ss_pred             hhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHH
Confidence            96  3     22222      68999999999887765443

>KOG0583|consensus

Probab=100.00  E-value=1.3e-32  Score=229.81  Aligned_cols=163  Identities=20%  Similarity=0.298  Sum_probs=139.1

Q ss_pred             CCCCCcEEEEEEeecccccccH-HHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFK-AQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~-~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||+|++......... .....+.+|+.+++.++ ||||++++.++....    .+|+||||+.||+|.+++..
T Consensus        38 ~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~----~~~ivmEy~~gGdL~~~i~~  113 (370)
T KOG0583|consen   38 HRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT----KIYIVMEYCSGGDLFDYIVN  113 (370)
T ss_pred             eccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC----eEEEEEEecCCccHHHHHHH
Confidence            4578899999977753211112 34556778999999998 999999999998755    49999999999999999998


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc--------ccCCCcccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                      .    +++.+..+..+|+|+++|+.|||+  +||+||||||+|||++.+ ++++|+|||++..        .+.+||+.|
T Consensus       114 ~----g~l~E~~ar~~F~Qlisav~y~H~--~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y  187 (370)
T KOG0583|consen  114 K----GRLKEDEARKYFRQLISAVAYCHS--RGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAY  187 (370)
T ss_pred             c----CCCChHHHHHHHHHHHHHHHHHHh--CCEeeCCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCccc
Confidence            4    359999999999999999999999  779999999999999999 9999999999874        568999999


Q ss_pred             cccccCC--C-Cch-----------hhhhhhCCCCCCc
Q psy238          151 TRQTYGR--P-ISG-----------QYEIVTKTNNVTE  174 (218)
Q Consensus       151 ~aPE~~~--~-~~~-----------~~ei~tg~~p~~~  174 (218)
                      +|||+..  . ++.           +|-|++|..||+.
T Consensus       188 ~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d  225 (370)
T KOG0583|consen  188 AAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDD  225 (370)
T ss_pred             CCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCC
Confidence            9999833  3 443           7999999999987

>KOG0588|consensus

Probab=100.00  E-value=7.6e-33  Score=235.86  Aligned_cols=167  Identities=20%  Similarity=0.320  Sum_probs=146.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..||+.+|||++.... .........+.+||-||+.+.||||+++|++++...    ++|+|+||++||-|.+++...+
T Consensus        33 h~~TGqlaaiKii~k~~-~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~----~lylvlEyv~gGELFdylv~kG  107 (786)
T KOG0588|consen   33 HAETGQLAAIKIIPKRS-ELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQ----HLYLVLEYVPGGELFDYLVRKG  107 (786)
T ss_pred             cccccceeEEEeecccc-ccccccccchhhhhHHHHHhcCCCeeeeeeeeccCc----eEEEEEEecCCchhHHHHHhhC
Confidence            46799999999998542 333556778999999999999999999999997754    6999999999999999998874


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                          ++++..+..++.||+.|+.|||.  .+|+||||||+|+|+|..+++||+|||++..       .+.||++.|.|||
T Consensus       108 ----~l~e~eaa~ff~QIi~gv~yCH~--~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PE  181 (786)
T KOG0588|consen  108 ----PLPEREAAHFFRQILDGVSYCHA--FNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLETSCGSPHYAAPE  181 (786)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHhh--hcceeccCCchhhhhhcccCEeeeccceeecccCCccccccCCCcccCCch
Confidence                49999999999999999999999  6699999999999999999999999999986       6789999999999


Q ss_pred             c--CCCCch-----------hhhhhhCCCCCCcchhhh
Q psy238          155 Y--GRPISG-----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       155 ~--~~~~~~-----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +  |.++..           +|-++||+.||++..-..
T Consensus       182 IV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~  219 (786)
T KOG0588|consen  182 IVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRV  219 (786)
T ss_pred             hhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHH
Confidence            7  555544           799999999999655443

>KOG0605|consensus

Probab=99.97  E-value=2.5e-31  Score=221.98  Aligned_cols=167  Identities=17%  Similarity=0.253  Sum_probs=143.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..||..+|+|++..++... ......+..|-.+|....+|.||+|+..|.+..    ++||||||++||++..+|.... 
T Consensus       163 k~Tg~iyAmK~LkKS~M~~-~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~----~LYLiMEylPGGD~mTLL~~~~-  236 (550)
T KOG0605|consen  163 KDTGEIYAMKILKKSEMLK-KNQVEHVRAERDILAEVDSPWVVKLYYSFQDKE----YLYLIMEYLPGGDMMTLLMRKD-  236 (550)
T ss_pred             ccCCcEEeeecccHHHHHh-hhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCC----eeEEEEEecCCccHHHHHHhcC-
Confidence            4689999999999765544 556778899999999999999999999998866    6999999999999999999874 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------------------
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------------------  141 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------------------  141 (218)
                         .|++..++.|+.+++.||..||.  .|+|||||||+|+|||..|+++|+|||+|..                     
T Consensus       237 ---~L~e~~arfYiaE~vlAI~~iH~--~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~  311 (550)
T KOG0605|consen  237 ---TLTEDWARFYIAETVLAIESIHQ--LGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLS  311 (550)
T ss_pred             ---cCchHHHHHHHHHHHHHHHHHHH--cCcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhc
Confidence               49999999999999999999999  7799999999999999999999999998732                     


Q ss_pred             ----------------------------------ccCCCccccccccc--CCCCc------h----hhhhhhCCCCCCcc
Q psy238          142 ----------------------------------IENKKYLSATRQTY--GRPIS------G----QYEIVTKTNNVTEK  175 (218)
Q Consensus       142 ----------------------------------~~~~~t~~y~aPE~--~~~~~------~----~~ei~tg~~p~~~~  175 (218)
                                                        ...+||+.|+|||+  +..+.      .    +||++.|-+||.+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~  391 (550)
T KOG0605|consen  312 EAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSE  391 (550)
T ss_pred             cCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence                                              23589999999997  22211      1    79999999999876


Q ss_pred             hhhhh
Q psy238          176 KKEKE  180 (218)
Q Consensus       176 ~~ee~  180 (218)
                      ...+.
T Consensus       392 tp~~T  396 (550)
T KOG0605|consen  392 TPQET  396 (550)
T ss_pred             CHHHH
Confidence            55443

>KOG0582|consensus

Probab=99.97  E-value=2.6e-31  Score=217.77  Aligned_cols=165  Identities=16%  Similarity=0.214  Sum_probs=141.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ...++..||||++...   ........+++|++.|+.++||||+.++..|....    .+|+||.||.+||+.+++...-
T Consensus        47 c~p~~e~VAIK~inLE---kc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~----~LWvVmpfMa~GS~ldIik~~~  119 (516)
T KOG0582|consen   47 CIPTNEVVAIKIINLE---KCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDS----ELWVVMPFMAGGSLLDIIKTYY  119 (516)
T ss_pred             ecccCCEEEEEEeehh---hhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecc----eeEEeehhhcCCcHHHHHHHHc
Confidence            3567899999999974   33445789999999999999999999999998755    5999999999999999999876


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYLS  149 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~~  149 (218)
                      .  ..+++..+..++++++.||.|||.  +|-||||||+.||||+.+|.++|+|||.+..            .+..||+.
T Consensus       120 ~--~Gl~E~~Ia~iLre~LkaL~YLH~--~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~  195 (516)
T KOG0582|consen  120 P--DGLEEASIATILREVLKALDYLHQ--NGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPC  195 (516)
T ss_pred             c--ccccHHHHHHHHHHHHHHHHHHHh--cCceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCccc
Confidence            5  349999999999999999999999  8899999999999999999999999997643            55689999


Q ss_pred             ccccccC----CCCch----------hhhhhhCCCCCCcchh
Q psy238          150 ATRQTYG----RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       150 y~aPE~~----~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |||||+.    ..++.          +.|+.+|..||.....
T Consensus       196 wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pP  237 (516)
T KOG0582|consen  196 WMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPP  237 (516)
T ss_pred             ccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCCh
Confidence            9999982    13332          6788899999976553

>KOG0198|consensus

Probab=99.97  E-value=2.8e-31  Score=215.02  Aligned_cols=163  Identities=25%  Similarity=0.348  Sum_probs=136.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|...|||.+...   +... .+.+.+|+.+|..++|||||+++|.......  ..++++|||+++|||.+++....
T Consensus        38 ~~~~g~~~AvK~v~~~---~~~~-~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~--~~~~i~mEy~~~GsL~~~~~~~g  111 (313)
T KOG0198|consen   38 NKKTGELMAVKSVELE---DSPT-SESLEREIRILSRLNHPNIVQYYGSSSSREN--DEYNIFMEYAPGGSLSDLIKRYG  111 (313)
T ss_pred             ecCCCcceeeeeeecc---cchh-HHHHHHHHHHHHhCCCCCEEeeCCccccccC--eeeEeeeeccCCCcHHHHHHHcC
Confidence            3456899999999864   1122 6778999999999999999999997444321  35899999999999999999875


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-CCcEEEeecCcccc-----------ccCCCccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT-----------IENKKYLS  149 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~-----------~~~~~t~~  149 (218)
                      +   .++++.++.+++|++.||.|||+  +||+||||||+|||++. ++.++|+|||.+..           ....||+.
T Consensus       112 ~---~l~E~~v~~ytr~iL~GL~ylHs--~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~  186 (313)
T KOG0198|consen  112 G---KLPEPLVRRYTRQILEGLAYLHS--KGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPN  186 (313)
T ss_pred             C---CCCHHHHHHHHHHHHHHHHHHHh--CCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCcc
Confidence            2   59999999999999999999999  88999999999999999 79999999997763           35789999


Q ss_pred             ccccccCC-C--C----------chhhhhhhCCCCCCcc
Q psy238          150 ATRQTYGR-P--I----------SGQYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~~~-~--~----------~~~~ei~tg~~p~~~~  175 (218)
                      |||||+.. .  .          ....||+||..||.+.
T Consensus       187 ~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~  225 (313)
T KOG0198|consen  187 YMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF  225 (313)
T ss_pred             ccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh
Confidence            99999843 1  1          1158999999999874

>KOG0659|consensus

Probab=99.97  E-value=3.9e-31  Score=204.28  Aligned_cols=167  Identities=19%  Similarity=0.273  Sum_probs=140.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |+.||+.||||.+...+..  ......+++||..|+.++||||+.|+++|...+    .+.+|+||++ .+|..+++...
T Consensus        23 d~~t~~~VAIKKIkl~~~k--dGi~~talREIK~Lqel~h~nIi~LiD~F~~~~----~l~lVfEfm~-tdLe~vIkd~~   95 (318)
T KOG0659|consen   23 DTETGKRVAIKKIKLGNAK--DGINRTALREIKLLQELKHPNIIELIDVFPHKS----NLSLVFEFMP-TDLEVVIKDKN   95 (318)
T ss_pred             ecCCCcEEEEEEeeccccc--cCccHHHHHHHHHHHHccCcchhhhhhhccCCC----ceEEEEEecc-ccHHHHhcccc
Confidence            7899999999999986433  345567899999999999999999999997755    4899999996 79999998764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..++...+..|+.+++.||+|||+  +.|+||||||.|+|++++|.+||+|||+++.        ...+.|.||.||
T Consensus        96 ---i~l~pa~iK~y~~m~LkGl~y~H~--~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAP  170 (318)
T KOG0659|consen   96 ---IILSPADIKSYMLMTLKGLAYCHS--KWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAP  170 (318)
T ss_pred             ---cccCHHHHHHHHHHHHHHHHHHHh--hhhhcccCCccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccCh
Confidence               468999999999999999999999  7799999999999999999999999999986        234679999999


Q ss_pred             cc--CC-----CCch------hhhhhhCCCCCCcchhhhh
Q psy238          154 TY--GR-----PISG------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       154 E~--~~-----~~~~------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+  |+     +++.      ..|++-+..-|.+.++=++
T Consensus       171 ELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQ  210 (318)
T KOG0659|consen  171 ELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQ  210 (318)
T ss_pred             HHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHH
Confidence            95  22     2211      6788888777777665443

>KOG0599|consensus

Probab=99.97  E-value=3.4e-31  Score=205.88  Aligned_cols=165  Identities=19%  Similarity=0.273  Sum_probs=140.0

Q ss_pred             CCCCCCcEEEEEEeecccccc----cHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            1 MDTEEGVEVVWNEVQFSERKN----FKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~----~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      ++..+|.++|+|++.......    .....+....|+.||+++ .||+|+.+.++|..+.    .+++|++.|+.|.|.+
T Consensus        37 i~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s----F~FlVFdl~prGELFD  112 (411)
T KOG0599|consen   37 IHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA----FVFLVFDLMPRGELFD  112 (411)
T ss_pred             hhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc----hhhhhhhhcccchHHH
Confidence            356899999999998743322    233456677899999998 7999999999997754    5899999999999999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcc
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      +|.....    +++...+.+++|++.|+.|||.  +.||||||||+|||++++.+++|+|||++..       ...+||+
T Consensus       113 yLts~Vt----lSEK~tR~iMrqlfegVeylHa--~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~GekLrelCGTP  186 (411)
T KOG0599|consen  113 YLTSKVT----LSEKETRRIMRQLFEGVEYLHA--RNIVHRDLKPENILLDDNMNIKISDFGFACQLEPGEKLRELCGTP  186 (411)
T ss_pred             Hhhhhee----ecHHHHHHHHHHHHHHHHHHHH--hhhhhcccChhheeeccccceEEeccceeeccCCchhHHHhcCCC
Confidence            9988765    9999999999999999999999  6699999999999999999999999999987       5679999


Q ss_pred             cccccccCC-------C-Cch----------hhhhhhCCCCCCcc
Q psy238          149 SATRQTYGR-------P-ISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       149 ~y~aPE~~~-------~-~~~----------~~ei~tg~~p~~~~  175 (218)
                      +|+|||...       + ++.          +|.++.|-.||+..
T Consensus       187 gYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHR  231 (411)
T KOG0599|consen  187 GYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHR  231 (411)
T ss_pred             cccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHH
Confidence            999999511       1 111          78899999999844

>KOG0597|consensus

Probab=99.97  E-value=3.4e-31  Score=222.61  Aligned_cols=161  Identities=21%  Similarity=0.267  Sum_probs=141.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      +.|++.||+|.+....  ........+.+|++|+..+.|||||.++++|+.+.    ++|+|+||+.| +|..+|.... 
T Consensus        24 K~t~~~vAik~i~K~g--r~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~----~~~vVte~a~g-~L~~il~~d~-   95 (808)
T KOG0597|consen   24 KYTIQVVAIKFIDKSG--RNEKELKNLRQEVRILRSLKHPNIVEMLESFETSA----HLWVVTEYAVG-DLFTILEQDG-   95 (808)
T ss_pred             ccceeEEEEEEehhcC--CchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccc----eEEEEehhhhh-hHHHHHHhcc-
Confidence            4578899999998543  33556778999999999999999999999997754    69999999975 9999999764 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                         .+|++.+..++.+++.||.|||+  .+|+|||++|.|||++..+.+|+||||+++.        ....||+-|||||
T Consensus        96 ---~lpEe~v~~~a~~LVsaL~yLhs--~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPE  170 (808)
T KOG0597|consen   96 ---KLPEEQVRAIAYDLVSALYYLHS--NRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPE  170 (808)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHh--cCcccccCCcceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHH
Confidence               49999999999999999999999  8899999999999999999999999999986        5679999999999


Q ss_pred             c--CCCCch----------hhhhhhCCCCCCcch
Q psy238          155 Y--GRPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +  +.+++.          +||+++|++||....
T Consensus       171 lv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s  204 (808)
T KOG0597|consen  171 LVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS  204 (808)
T ss_pred             HHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH
Confidence            7  445444          799999999997544

>KOG0594|consensus

Probab=99.97  E-value=1.4e-30  Score=208.70  Aligned_cols=173  Identities=19%  Similarity=0.301  Sum_probs=143.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCc-ccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPN-IVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~-iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|..||+|.+......  ........+|+.+|..++|+| |+.|++++.....  ..+.+++||||++ .+|..++.
T Consensus        32 ~~~~g~~VALKkirl~~~~--EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d-~DL~~ymd  108 (323)
T KOG0594|consen   32 SKRTGKFVALKKIRLEFEE--EGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLD-RDLKKYMD  108 (323)
T ss_pred             EecCCCEEEEEEEeccccc--cCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEEEeec-ccHHHHHH
Confidence            5678999999999875322  335567799999999999999 9999999877542  2346899999995 79999999


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                      ........++...+..+++||+.||+|||+  ++|+||||||+||||+++|.+||+|||+++.        .+..+|.+|
T Consensus       109 ~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~--~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWY  186 (323)
T KOG0594|consen  109 SLPKKPQGLPPRLIKSFMRQLLRGLAFLHS--HGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWY  186 (323)
T ss_pred             hccccccCCCHHHHHHHHHHHHHHHHHHHh--CCeecccCCcceEEECCCCcEeeeccchHHHhcCCcccccccEEEeec
Confidence            876322347778999999999999999999  8899999999999999999999999999976        567889999


Q ss_pred             ccccc--CC-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          151 TRQTY--GR-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       151 ~aPE~--~~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      .|||+  |+ .+++          .+||++++.-|.+..+..
T Consensus       187 RaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~  228 (323)
T KOG0594|consen  187 RAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEID  228 (323)
T ss_pred             cCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHH
Confidence            99997  33 2222          689999999998887733

>KOG0694|consensus

Probab=99.97  E-value=3.2e-31  Score=226.75  Aligned_cols=166  Identities=14%  Similarity=0.194  Sum_probs=139.6

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+++.+|||+++..... .....+....|..|+... +||++++|+.+|....    ++|+||||+.||++..+.+.  
T Consensus       390 k~~~e~yAIK~LKK~~Il-~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~----~l~fvmey~~Ggdm~~~~~~--  462 (694)
T KOG0694|consen  390 KGTNEYYAIKVLKKGDIL-QRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKE----HLFFVMEYVAGGDLMHHIHT--  462 (694)
T ss_pred             cCCCcEEEEEEeecccee-ccccHHHHHHHHHHHHHhccCCeEeecccccccCC----eEEEEEEecCCCcEEEEEec--
Confidence            357889999999964432 245567788888888777 5999999999997754    79999999999994444432  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..|++..++.|+..|+.||.|||+  ++||+||||.+|||+|.+|+++|+|||++..        .+.+||+.||||
T Consensus       463 ---~~F~e~rarfyaAev~l~L~fLH~--~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aP  537 (694)
T KOG0694|consen  463 ---DVFSEPRARFYAAEVVLGLQFLHE--NGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAP  537 (694)
T ss_pred             ---ccccHHHHHHHHHHHHHHHHHHHh--cCceeeecchhheEEcccCcEEecccccccccCCCCCccccccCChhhcCh
Confidence               349999999999999999999999  8899999999999999999999999999865        789999999999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+..  .++.          +|||+.|..||.+..++|.
T Consensus       538 Eil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~  576 (694)
T KOG0694|consen  538 EVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEV  576 (694)
T ss_pred             hhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence            9733  3332          7999999999998877764

>KOG0663|consensus

Probab=99.97  E-value=6.5e-31  Score=208.87  Aligned_cols=169  Identities=19%  Similarity=0.242  Sum_probs=142.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |+.|++.||+|.++...  ......-..++||.+|.+++|||||.+-.+...+..  ..+||||+||+ .+|.+++....
T Consensus        97 dk~t~eIVALKr~kmek--ek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~--d~iy~VMe~~E-hDLksl~d~m~  171 (419)
T KOG0663|consen   97 DKKTDEIVALKRLKMEK--EKEGFPITSLREINILLKARHPNIVEVKEVVVGSNM--DKIYIVMEYVE-HDLKSLMETMK  171 (419)
T ss_pred             cCCcceeEEeeeccccc--ccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecccc--ceeeeeHHHHH-hhHHHHHHhcc
Confidence            78899999999999753  223344567899999999999999999998876554  35999999996 69999999865


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         .+|....+..+..|++.||.|||+  +.|+||||||+|+|+++.|.++|+|||+++.        +..+.|.||.||
T Consensus       172 ---q~F~~~evK~L~~QlL~glk~lH~--~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaP  246 (419)
T KOG0663|consen  172 ---QPFLPGEVKTLMLQLLRGLKHLHD--NWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAP  246 (419)
T ss_pred             ---CCCchHHHHHHHHHHHHHHHHHhh--ceeEecccchhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCH
Confidence               569999999999999999999999  7799999999999999999999999999986        556789999999


Q ss_pred             cc--CC-CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          154 TY--GR-PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       154 E~--~~-~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+  |. .++.          +.|+++++.-|.+..+-.+
T Consensus       247 ELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQ  286 (419)
T KOG0663|consen  247 ELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQ  286 (419)
T ss_pred             HHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHH
Confidence            97  32 3333          5778888888888765443

>KOG0610|consensus

Probab=99.97  E-value=3.4e-30  Score=209.51  Aligned_cols=170  Identities=16%  Similarity=0.206  Sum_probs=143.4

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..+|+|++....... .....+++.|.+||+.+.||+++.||..|....    ..|+|||||+||+|..+++...+ 
T Consensus       100 ~t~~~fAmKVmdK~~l~~-rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~----~~cl~meyCpGGdL~~LrqkQp~-  173 (459)
T KOG0610|consen  100 GTNCLFAMKVMDKESLAS-RKKLKRAQTEREILSLLDHPFLPTLYASFETDK----YSCLVMEYCPGGDLHSLRQKQPG-  173 (459)
T ss_pred             CCCceEEEEEecHHHHhh-hhHHHHHHHHHHHHHhcCCCccchhhheeeccc----eeEEEEecCCCccHHHHHhhCCC-
Confidence            356889999998543332 556678888999999999999999999997754    68999999999999999998865 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------------------
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------------------  141 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------------------  141 (218)
                       ..+++..++.|+.+|+.||+|||-  .|||+|||||+||||.++|++.|+||.++..                      
T Consensus       174 -~~fse~~aRFYaAEvl~ALEYLHm--lGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~  250 (459)
T KOG0610|consen  174 -KRFSESAARFYAAEVLLALEYLHM--LGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSC  250 (459)
T ss_pred             -CccchhhHHHHHHHHHHHHHHHHh--hceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCccc
Confidence             679999999999999999999999  6699999999999999999999999885422                      


Q ss_pred             ------------------------------------------ccCCCccccccccc--CC------CCch----hhhhhh
Q psy238          142 ------------------------------------------IENKKYLSATRQTY--GR------PISG----QYEIVT  167 (218)
Q Consensus       142 ------------------------------------------~~~~~t~~y~aPE~--~~------~~~~----~~ei~t  167 (218)
                                                                ...+||..|+|||+  |.      .|+.    +|||+.
T Consensus       251 ~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLy  330 (459)
T KOG0610|consen  251 RSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLY  330 (459)
T ss_pred             ccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHh
Confidence                                                      22468899999997  22      2222    799999


Q ss_pred             CCCCCCcchhhhhHH
Q psy238          168 KTNNVTEKKKEKEEE  182 (218)
Q Consensus       168 g~~p~~~~~~ee~~~  182 (218)
                      |..||.+...++.--
T Consensus       331 G~TPFKG~~~~~Tl~  345 (459)
T KOG0610|consen  331 GTTPFKGSNNKETLR  345 (459)
T ss_pred             CCCCcCCCCchhhHH
Confidence            999999988877643

>KOG0661|consensus

Probab=99.97  E-value=2.2e-31  Score=219.61  Aligned_cols=165  Identities=22%  Similarity=0.241  Sum_probs=139.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHH-HHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEE-KIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~-~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ..++|..||||.++.    .+-...+ .-++|+..|.+++ |||||+|.+++.+.+.   .+|+|||||+ .+|.+++..
T Consensus        31 ~~~~~~~VAIK~MK~----Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~---~L~fVfE~Md-~NLYqLmK~  102 (538)
T KOG0661|consen   31 SKETGELVAIKKMKK----KFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDR---ILYFVFEFMD-CNLYQLMKD  102 (538)
T ss_pred             ecCCCceeeHHHHHh----hhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCc---eEeeeHHhhh-hhHHHHHhh
Confidence            367899999999983    2222333 3378999999998 9999999999988652   6999999996 799999998


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                      ++   ..|++..++.|++||++||+|+|.  +|+.|||+||+|||+.....+||+|||+++.       +..+.|.||.|
T Consensus       103 R~---r~fse~~irnim~QilqGL~hiHk--~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVSTRWYRA  177 (538)
T KOG0661|consen  103 RN---RLFSESDIRNIMYQILQGLAHIHK--HGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYVSTRWYRA  177 (538)
T ss_pred             cC---CcCCHHHHHHHHHHHHHHHHHHHh--cCcccccCChhheEecccceeEecccccccccccCCCcchhhhcccccc
Confidence            73   679999999999999999999999  8899999999999999999999999999986       55688999999


Q ss_pred             cccCC---CCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYGR---PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~~---~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+..   -++.          ++||++-+.-|.+..+-.
T Consensus       178 PEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~D  217 (538)
T KOG0661|consen  178 PEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEID  217 (538)
T ss_pred             hHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHH
Confidence            99722   1111          799999999998776543

>KOG0578|consensus

Probab=99.97  E-value=7e-31  Score=220.55  Aligned_cols=157  Identities=22%  Similarity=0.315  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..||||.+...    .....+-+++|+.+|+..+|+|||.+++.|...+    .+|+||||++||+|.+++....
T Consensus       294 ~~~~~~~VaiK~m~l~----~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~d----eLWVVMEym~ggsLTDvVt~~~  365 (550)
T KOG0578|consen  294 KISTKQEVAIKRMDLR----KQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGD----ELWVVMEYMEGGSLTDVVTKTR  365 (550)
T ss_pred             eccCCceEEEEEEEec----cCCchhhhHHHHHHHHhccchHHHHHHHHhcccc----eeEEEEeecCCCchhhhhhccc
Confidence            3467889999999853    2445677899999999999999999999887764    4999999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                           +++.++..++++++.||.|||.  +||+|||||.+|||+..+|.+||+|||+|..        .+.+||+.||||
T Consensus       366 -----~~E~qIA~Icre~l~aL~fLH~--~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAP  438 (550)
T KOG0578|consen  366 -----MTEGQIAAICREILQGLKFLHA--RGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAP  438 (550)
T ss_pred             -----ccHHHHHHHHHHHHHHHHHHHh--cceeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccch
Confidence                 8999999999999999999999  8899999999999999999999999999876        678999999999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCC
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVT  173 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~  173 (218)
                      |+..  .+.+          +.||+-|..||-
T Consensus       439 EVvtrk~YG~KVDIWSLGIMaIEMveGEPPYl  470 (550)
T KOG0578|consen  439 EVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYL  470 (550)
T ss_pred             hhhhhcccCccccchhhhhHHHHHhcCCCCcc
Confidence            9722  1111          799999999995

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.97  E-value=7.7e-30  Score=213.83  Aligned_cols=167  Identities=14%  Similarity=0.184  Sum_probs=137.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+..|+.++..++||+|+++++++.+..    .+|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~-   95 (363)
T cd05628          22 KKDTGHVYAMKILRKADM-LEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKL----NLYLIMEFLPGGDMMTLLMKK-   95 (363)
T ss_pred             ECCCCCEEEEEEEEHHHH-HHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCC----eEEEEEcCCCCCcHHHHHHhc-
Confidence            456899999999974321 11334467788999999999999999999987654    589999999999999999864 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------------------  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------------------  141 (218)
                         ..+++..+..++.|++.||.|||+  .+|+||||||+|||++.++.++|+|||++..                    
T Consensus        96 ---~~l~~~~~~~~~~qi~~aL~~lH~--~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~  170 (363)
T cd05628          96 ---DTLTEEETQFYIAETVLAIDSIHQ--LGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSD  170 (363)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeEecCCCHHHeEECCCCCEEEeeccCccccccccccccccccccccccc
Confidence               349999999999999999999999  7799999999999999999999999998753                    


Q ss_pred             -----------------------ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          142 -----------------------IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       142 -----------------------~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                                             ....||+.|+|||+  +..++.          +|+|++|..||.+....+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~  243 (363)
T cd05628         171 FTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQE  243 (363)
T ss_pred             ccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHH
Confidence                                   12468999999997  222222          799999999998665443

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0585|consensus

Probab=99.97  E-value=1.8e-30  Score=214.28  Aligned_cols=168  Identities=19%  Similarity=0.246  Sum_probs=134.7

Q ss_pred             CCCCCcEEEEEEeeccccc------ccH----HHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCC
Q psy238            2 DTEEGVEVVWNEVQFSERK------NFK----AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSG   71 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~------~~~----~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~   71 (218)
                      |..+|..||||++......      ...    ...+.+.+||.+|++++|||||+|+.+.-++.  ...+|||+|||..|
T Consensus       118 ~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~--s~~~YlVley~s~G  195 (576)
T KOG0585|consen  118 DEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPE--SDKLYLVLEYCSKG  195 (576)
T ss_pred             ecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcc--cCceEEEEEeccCC
Confidence            6778999999999854321      101    11257899999999999999999999987754  45899999999887


Q ss_pred             CHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------
Q psy238           72 SLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------  141 (218)
Q Consensus        72 sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------  141 (218)
                      .+...-...    ..++..+++.|++.++.||+|||.  +|||||||||+|+|++++|.+||+|||.+..          
T Consensus       196 ~v~w~p~d~----~els~~~Ar~ylrDvv~GLEYLH~--QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d  269 (576)
T KOG0585|consen  196 EVKWCPPDK----PELSEQQARKYLRDVVLGLEYLHY--QGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSD  269 (576)
T ss_pred             ccccCCCCc----ccccHHHHHHHHHHHHHHHHHHHh--cCeeccccchhheEEcCCCcEEeeccceeeecccCCccccH
Confidence            775433221    228999999999999999999999  8899999999999999999999999998863          


Q ss_pred             ---ccCCCcccccccccCCC---Cc-------------hhhhhhhCCCCCCcchh
Q psy238          142 ---IENKKYLSATRQTYGRP---IS-------------GQYEIVTKTNNVTEKKK  177 (218)
Q Consensus       142 ---~~~~~t~~y~aPE~~~~---~~-------------~~~ei~tg~~p~~~~~~  177 (218)
                         ....||+.|+|||+...   .+             ++|=++-|.-||.+...
T Consensus       270 ~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~  324 (576)
T KOG0585|consen  270 DQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFE  324 (576)
T ss_pred             HHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchH
Confidence               44789999999997332   11             16778889999975543

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=1.4e-29  Score=209.17  Aligned_cols=165  Identities=16%  Similarity=0.186  Sum_probs=136.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+.+|+.++..++||||+.+++++....    .+|+||||+++++|.+++... 
T Consensus        16 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   89 (323)
T cd05571          16 EKATGKYYAMKILKKEVI-IAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHD----RLCFVMEYANGGELFFHLSRE-   89 (323)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCC----EEEEEEeCCCCCcHHHHHHHc-
Confidence            456899999999974321 11334456788999999999999999999887644    699999999999999998764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+||
T Consensus        90 ---~~~~~~~~~~~~~qi~~~L~~lH~--~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aP  164 (323)
T cd05571          90 ---RVFSEDRARFYGAEIVSALGYLHS--CDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP  164 (323)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccCh
Confidence               348999999999999999999999  7799999999999999999999999998764        235689999999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..  .++.          +|+|++|..||.....
T Consensus       165 E~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~  200 (323)
T cd05571         165 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  200 (323)
T ss_pred             hhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH
Confidence            9732  2222          7999999999976544

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.97  E-value=2.4e-29  Score=212.19  Aligned_cols=165  Identities=13%  Similarity=0.195  Sum_probs=136.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++.... .........+.+|+.++..+.||||+++++++.+..    .+|+||||+++|+|.+++... 
T Consensus        22 ~~~~~~~~aiK~i~~~~-~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~-   95 (382)
T cd05625          22 KVDTKALYAMKTLRKKD-VLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKD----NLYFVMDYIPGGDMMSLLIRM-   95 (382)
T ss_pred             ECCCCCEEEEEEEeHHH-hhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCC----EEEEEEeCCCCCcHHHHHHhc-
Confidence            45688999999997432 112344567889999999999999999999997644    699999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------------------  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------------------  141 (218)
                         ..+++..+..++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..                    
T Consensus        96 ---~~~~e~~~~~~~~qi~~al~~lH~--~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~  170 (382)
T cd05625          96 ---GIFPEDLARFYIAELTCAVESVHK--MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDS  170 (382)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEECCCCCEEEeECCCCcccccccccccccccccccccc
Confidence               348999999999999999999999  7799999999999999999999999998631                    


Q ss_pred             -----------------------------------ccCCCcccccccccC--CCCch----------hhhhhhCCCCCCc
Q psy238          142 -----------------------------------IENKKYLSATRQTYG--RPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       142 -----------------------------------~~~~~t~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~  174 (218)
                                                         ....||+.|+|||+.  ..++.          +|+|++|..||..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~  250 (382)
T cd05625         171 MDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLA  250 (382)
T ss_pred             ccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCC
Confidence                                               123689999999972  22222          7999999999986


Q ss_pred             chh
Q psy238          175 KKK  177 (218)
Q Consensus       175 ~~~  177 (218)
                      ...
T Consensus       251 ~~~  253 (382)
T cd05625         251 QTP  253 (382)
T ss_pred             CCH
Confidence            654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.97  E-value=1.7e-29  Score=209.16  Aligned_cols=165  Identities=20%  Similarity=0.255  Sum_probs=137.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++...... .......+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++... 
T Consensus        39 ~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-  112 (329)
T PTZ00263         39 HKGTGEYYAIKCLKKREIL-KMKQVQHVAQEKSILMELSHPFIVNMMCSFQDEN----RVYFLLEFVVGGELFTHLRKA-  112 (329)
T ss_pred             ECCCCCEEEEEEEEHHHHh-hhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCC----EEEEEEcCCCCChHHHHHHHc-
Confidence            3567899999999743211 1234567889999999999999999999987654    699999999999999999865 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYG  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~  156 (218)
                         ..+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..     ....||+.|+|||+.
T Consensus       113 ---~~~~~~~~~~~~~qi~~aL~~LH~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~  187 (329)
T PTZ00263        113 ---GRFPNDVAKFYHAELVLAFEYLHS--KDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVI  187 (329)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCcceecCChhhcCHHHH
Confidence               348999999999999999999999  7799999999999999999999999999875     345789999999962


Q ss_pred             --CCCch----------hhhhhhCCCCCCcchh
Q psy238          157 --RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       157 --~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                        ...+.          +|+|++|..||.+...
T Consensus       188 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~  220 (329)
T PTZ00263        188 QSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP  220 (329)
T ss_pred             cCCCCCCcceeechHHHHHHHHcCCCCCCCCCH
Confidence              22211          7999999999976544

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=2.4e-29  Score=207.66  Aligned_cols=166  Identities=18%  Similarity=0.174  Sum_probs=136.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||++..............+..|+.+|..++||||++++++|...+    .+|+||||+++++|.+++...  
T Consensus        21 ~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~--   94 (323)
T cd05584          21 ADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGG----KLYLILEYLSGGELFMHLERE--   94 (323)
T ss_pred             CCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCC----eEEEEEeCCCCchHHHHHHHc--
Confidence            45789999999975322222334456788999999999999999999987643    689999999999999998764  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                        ..+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|||
T Consensus        95 --~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  170 (323)
T cd05584          95 --GIFMEDTACFYLSEISLALEHLHQ--QGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPE  170 (323)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChh
Confidence              348889999999999999999999  7799999999999999999999999998753        2346899999999


Q ss_pred             cCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          155 YGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +..  ..+.          +|+|++|..||......
T Consensus       171 ~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~  206 (323)
T cd05584         171 ILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRK  206 (323)
T ss_pred             hccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHH
Confidence            732  1111          79999999999865543

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.2e-29  Score=206.87  Aligned_cols=165  Identities=14%  Similarity=0.153  Sum_probs=136.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++..... ........+..|+.++..++||||+++++++....    .+|+||||+++++|.+++... 
T Consensus        14 ~~~~~~~~aiK~i~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~-   87 (312)
T cd05585          14 KRDTQRIYALKTIRKAHI-VSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPE----KLYLVLAFINGGELFHHLQRE-   87 (312)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCC----eEEEEEcCCCCCcHHHHHHhc-
Confidence            456789999999974321 12344567788999999999999999999887643    689999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+||
T Consensus        88 ---~~~~~~~~~~~~~qi~~~l~~lH~--~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  162 (312)
T cd05585          88 ---GRFDLSRARFYTAELLCALENLHK--FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAP  162 (312)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCH
Confidence               348999999999999999999999  7799999999999999999999999998764        234689999999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..  .++.          +|++++|..||.....
T Consensus       163 E~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~  198 (312)
T cd05585         163 ELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENV  198 (312)
T ss_pred             HHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCH
Confidence            9622  2222          7999999999976543

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0580|consensus

Probab=99.97  E-value=1e-30  Score=199.25  Aligned_cols=167  Identities=19%  Similarity=0.249  Sum_probs=142.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++-.||+|++-.+... .......+.+|++|-+.++||||+++|++|.+..    ++|+++||.+.|+|...|.....
T Consensus        44 kks~~IvalKVlfKsqi~-~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~----riyLilEya~~gel~k~L~~~~~  118 (281)
T KOG0580|consen   44 KKSLFIVALKVLFKSQIL-KTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSK----RIYLILEYAPRGELYKDLQEGRM  118 (281)
T ss_pred             ccCCcEEEEeeeeHHHHH-HhcchhhhhheeEeecccCCccHHhhhhheeccc----eeEEEEEecCCchHHHHHHhccc
Confidence            457788999999865422 2345678889999999999999999999998865    69999999999999999996543


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCcccccccccC
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTYG  156 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~~  156 (218)
                        ..+++..+..+..|++.||.|||.  .+||||||+|+|+|++.++.++|+|||++-.      .+.+||+.|.+||..
T Consensus       119 --~~f~e~~~a~Yi~q~A~Al~y~h~--k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv  194 (281)
T KOG0580|consen  119 --KRFDEQRAATYIKQLANALLYCHL--KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMV  194 (281)
T ss_pred             --ccccccchhHHHHHHHHHHHHhcc--CCcccCCCCHHHhccCCCCCeeccCCCceeecCCCCceeeecccccCCHhhc
Confidence              559999999999999999999999  6699999999999999999999999998754      678999999999974


Q ss_pred             CCC--ch----------hhhhhhCCCCCCcchhh
Q psy238          157 RPI--SG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       157 ~~~--~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .+-  +.          .||++.|..||......
T Consensus       195 ~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~  228 (281)
T KOG0580|consen  195 EGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHS  228 (281)
T ss_pred             CCCCccchhhHHHHHHHHHHHHhcCCchhhhhhH
Confidence            422  22          59999999999877633

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.97  E-value=3.3e-29  Score=207.37  Aligned_cols=166  Identities=17%  Similarity=0.205  Sum_probs=136.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++..... ........+.+|+.+++.++||||+++++++...+    .+|+||||+++++|..++... 
T Consensus        16 ~~~~~~~~avK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~Ey~~~g~L~~~l~~~-   89 (328)
T cd05593          16 EKASGKYYAMKILKKEVI-IAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKD----RLCFVMEYVNGGELFFHLSRE-   89 (328)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC----EEEEEEeCCCCCCHHHHHHhc-
Confidence            456899999999974321 11334567788999999999999999999887644    689999999999999988754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+||
T Consensus        90 ---~~l~~~~~~~~~~qi~~aL~~LH~--~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aP  164 (328)
T cd05593          90 ---RVFSEDRTRFYGAEIVSALDYLHS--GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAP  164 (328)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccCh
Confidence               348999999999999999999999  7799999999999999999999999998764        234689999999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.  ..++.          +|++++|..||.....+
T Consensus       165 E~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~  201 (328)
T cd05593         165 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE  201 (328)
T ss_pred             hhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHH
Confidence            972  22222          79999999999765443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.6e-29  Score=205.80  Aligned_cols=166  Identities=18%  Similarity=0.221  Sum_probs=137.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++...... .......+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++....
T Consensus        22 ~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~   96 (291)
T cd05612          22 DRISEHYYALKVMAIPEVI-RLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQR----FLYMLMEYVPGGELFSYLRNSG   96 (291)
T ss_pred             EcCCCCEEEEEEEEHHHHh-hhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCC----eEEEEEeCCCCCCHHHHHHHcC
Confidence            4567999999999753211 1234567889999999999999999998876643    6899999999999999997653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYG  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~  156 (218)
                          .+++..+..++.|++.||.|||+  ++|+||||+|+|||++.++.++|+|||++..     ....|++.|+|||+.
T Consensus        97 ----~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~  170 (291)
T cd05612          97 ----RFSNSTGLFYASEIVCALEYLHS--KEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVI  170 (291)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeeecCCCHHHeEECCCCCEEEEecCcchhccCCcccccCChhhcCHHHH
Confidence                48999999999999999999999  7799999999999999999999999999875     345689999999962


Q ss_pred             --CCCch----------hhhhhhCCCCCCcchhh
Q psy238          157 --RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       157 --~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                        ...+.          +|+|++|..||.+....
T Consensus       171 ~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~  204 (291)
T cd05612         171 QSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPF  204 (291)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence              22222          79999999999876543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.97  E-value=2.9e-29  Score=211.65  Aligned_cols=167  Identities=13%  Similarity=0.178  Sum_probs=137.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+.+|+.++..++||||+++++++.+..    ++|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~~aiK~i~~~~~~-~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~-   95 (381)
T cd05626          22 KVDTHALYAMKTLRKKDVL-NRNQVAHVKAERDILAEADNEWVVKLYYSFQDKD----NLYFVMDYIPGGDMMSLLIRM-   95 (381)
T ss_pred             ECCCCCEEEEEEEEHHHhh-hhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCC----EEEEEEecCCCCcHHHHHHhc-
Confidence            4568999999999743211 1334567889999999999999999999997644    699999999999999999765 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------------------  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------------------  141 (218)
                         ..+++..+..++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..                    
T Consensus        96 ---~~~~e~~~~~~~~qi~~aL~~LH~--~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~  170 (381)
T cd05626          96 ---EVFPEVLARFYIAELTLAIESVHK--MGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDS  170 (381)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccc
Confidence               348999999999999999999999  7799999999999999999999999998631                    


Q ss_pred             -----------------------------------ccCCCcccccccccC--CCCch----------hhhhhhCCCCCCc
Q psy238          142 -----------------------------------IENKKYLSATRQTYG--RPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       142 -----------------------------------~~~~~t~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~  174 (218)
                                                         ....||+.|+|||+.  ..++.          +|+|++|..||..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~  250 (381)
T cd05626         171 MEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLA  250 (381)
T ss_pred             cCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcC
Confidence                                               124689999999962  22222          7999999999987


Q ss_pred             chhhh
Q psy238          175 KKKEK  179 (218)
Q Consensus       175 ~~~ee  179 (218)
                      ....+
T Consensus       251 ~~~~~  255 (381)
T cd05626         251 PTPTE  255 (381)
T ss_pred             CCHHH
Confidence            65433

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.1e-29  Score=212.10  Aligned_cols=166  Identities=14%  Similarity=0.178  Sum_probs=136.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+.+|+.++..++||||++++++|.+..    ++|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~-   95 (377)
T cd05629          22 KKDTGKIYAMKTLLKSEM-FKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQ----YLYLIMEFLPGGDLMTMLIKY-   95 (377)
T ss_pred             ECCCCCEEEEEEEEHHHH-HHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC----eeEEEEeCCCCCcHHHHHHhc-
Confidence            456899999999874321 11334567888999999999999999999997644    699999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-------------------  142 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-------------------  142 (218)
                         ..+++..++.++.|++.||.|||+  .+|+||||||+|||++.++.++|+|||++...                   
T Consensus        96 ---~~~~~~~~~~~~~ql~~aL~~LH~--~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T cd05629          96 ---DTFSEDVTRFYMAECVLAIEAVHK--LGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNK  170 (377)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCHHHEEECCCCCEEEeecccccccccccccccccccccccccc
Confidence               348999999999999999999999  67999999999999999999999999987410                   


Q ss_pred             ------------------------------------cCCCcccccccccC--CCCch----------hhhhhhCCCCCCc
Q psy238          143 ------------------------------------ENKKYLSATRQTYG--RPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       143 ------------------------------------~~~~t~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~  174 (218)
                                                          ...||+.|+|||+.  ..++.          +|++++|..||.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~  250 (377)
T cd05629         171 NRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCS  250 (377)
T ss_pred             cccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCC
Confidence                                                24689999999972  22222          7999999999976


Q ss_pred             chhh
Q psy238          175 KKKE  178 (218)
Q Consensus       175 ~~~e  178 (218)
                      ....
T Consensus       251 ~~~~  254 (377)
T cd05629         251 ENSH  254 (377)
T ss_pred             CCHH
Confidence            5543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0584|consensus

Probab=99.96  E-value=2.2e-30  Score=219.71  Aligned_cols=170  Identities=36%  Similarity=0.608  Sum_probs=149.8

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +|..+|.+|||-.++..+....+...+++..|+++|+.|.||||+++|++|.+..+  ..+.+|+|.+..|+|..|+..+
T Consensus        60 ~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n--~~in~iTEL~TSGtLr~Y~kk~  137 (632)
T KOG0584|consen   60 FDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDN--KTINFITELFTSGTLREYRKKH  137 (632)
T ss_pred             cccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCC--ceeeeeeecccCCcHHHHHHHh
Confidence            58899999999999988777778888999999999999999999999999988654  4688999999999999999988


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc------ccCCCccccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT------IENKKYLSATRQ  153 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~------~~~~~t~~y~aP  153 (218)
                      +.    +....+..|++||+.||.|||+...+|||||||-+||+|+.+ |.|||+|+|++..      ....||+.||||
T Consensus       138 ~~----vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAP  213 (632)
T KOG0584|consen  138 RR----VNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAP  213 (632)
T ss_pred             cc----CCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhccccceeccCccccCh
Confidence            54    899999999999999999999955789999999999999765 9999999999876      457999999999


Q ss_pred             ccCC-CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR-PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~-~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+-. .+..          +.||+|+..||.+..
T Consensus       214 EmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~  247 (632)
T KOG0584|consen  214 EMYEENYNELVDVYAFGMCMLEMVTSEYPYSECT  247 (632)
T ss_pred             HHHhhhcchhhhhhhhhHHHHHHHhccCChhhhC
Confidence            9632 2222          789999999998654

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.96  E-value=2.3e-29  Score=211.83  Aligned_cols=166  Identities=13%  Similarity=0.185  Sum_probs=136.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+.+|+.+|..+.||||+++++++.+.+    .+|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~~avK~~~~~~~-~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~----~~~lv~E~~~~g~L~~~i~~~-   95 (376)
T cd05598          22 KVDTNALYAMKTLRKADV-LMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKD----NLYFVMDYIPGGDMMSLLIRL-   95 (376)
T ss_pred             ECCCCCEEEEEEEcHHHH-HhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCC----EEEEEEeCCCCCcHHHHHHhc-
Confidence            456789999999874321 11234566788999999999999999999987644    699999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------------------  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------------------  141 (218)
                         ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..                    
T Consensus        96 ---~~~~~~~~~~~~~qi~~al~~lH~--~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~  170 (376)
T cd05598          96 ---GIFEEDLARFYIAELTCAIESVHK--MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDS  170 (376)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeEeCCCCHHHEEECCCCCEEEEeCCCCcccccccccccccccccccccc
Confidence               348999999999999999999999  7799999999999999999999999998631                    


Q ss_pred             -------------------------------ccCCCcccccccccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          142 -------------------------------IENKKYLSATRQTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       142 -------------------------------~~~~~t~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                                                     ....||+.|+|||+.  ..++.          +|+|++|..||.+....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~  250 (376)
T cd05598         171 MEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPA  250 (376)
T ss_pred             ccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHH
Confidence                                           124689999999962  22221          79999999999876543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.96  E-value=3.8e-29  Score=206.57  Aligned_cols=166  Identities=16%  Similarity=0.192  Sum_probs=136.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++..... ........+..|+.++..++||||++++++|....    .+|+||||+++++|..++... 
T Consensus        16 ~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~----~~~lv~E~~~~~~L~~~l~~~-   89 (323)
T cd05595          16 EKATGRYYAMKILRKEVI-IAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD----RLCFVMEYANGGELFFHLSRE-   89 (323)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCC----EEEEEEeCCCCCcHHHHHHHc-
Confidence            456899999999974321 11234456778999999999999999999987644    689999999999999888764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+||
T Consensus        90 ---~~~~~~~~~~~~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  164 (323)
T cd05595          90 ---RVFTEERARFYGAEIVSALEYLHS--RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP  164 (323)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCc
Confidence               348999999999999999999999  7799999999999999999999999998754        235689999999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+..  .++.          +|++++|..||.....+
T Consensus       165 E~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~  201 (323)
T cd05595         165 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE  201 (323)
T ss_pred             ccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHH
Confidence            9732  2222          79999999999765543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.4e-29  Score=206.83  Aligned_cols=167  Identities=14%  Similarity=0.138  Sum_probs=138.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+..|+.++..++||||+++++++....    .+|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~----~~~lv~e~~~g~~L~~~l~~~-   95 (333)
T cd05600          22 KKDTGEIVALKRMKKSLLF-KLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDE----YLYLAMEYVPGGDFRTLLNNL-   95 (333)
T ss_pred             ECCCCCEEEEEEEEHHHHh-hhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCC----EEEEEEeCCCCCCHHHHHHHc-
Confidence            3567899999999743211 1234557788999999999999999999987644    699999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYG  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~  156 (218)
                         ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..     ....||+.|+|||+.
T Consensus        96 ---~~l~~~~~~~~~~qi~~~l~~lH~--~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~  170 (333)
T cd05600          96 ---GVLSEDHARFYMAEMFEAVDALHE--LGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVL  170 (333)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCCCHHHEEECCCCCEEEEeCcCCcccccccCCcccCccccChhHh
Confidence               348999999999999999999999  7799999999999999999999999999875     456789999999972


Q ss_pred             --CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          157 --RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       157 --~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                        ..++.          +|+|++|..||.....++
T Consensus       171 ~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~  205 (333)
T cd05600         171 RGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNE  205 (333)
T ss_pred             cCCCCCCccceecchHHHhhhhhCCCCCCCCCHHH
Confidence              22222          799999999998765443

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0660|consensus

Probab=99.96  E-value=5.5e-30  Score=205.29  Aligned_cols=171  Identities=18%  Similarity=0.195  Sum_probs=142.8

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeec-CCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTD-THNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~-~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +|+.||..||||.+..  .........+..+|+.+|+.++|+||+.+.+++.. .......+|+|+++| +.+|...++.
T Consensus        42 ~~~~t~~~VAIKKi~~--~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elM-etDL~~iik~  118 (359)
T KOG0660|consen   42 KDKRTGEKVAIKKILN--PFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELM-ETDLHQIIKS  118 (359)
T ss_pred             EEcCCCCEeehhhhhh--hhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhHH-hhHHHHHHHc
Confidence            4788999999998862  24446778899999999999999999999999876 223345799999999 5799999987


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLS  149 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~  149 (218)
                      ..    .++...+..+++|++.||.|+||  .+|+||||||.|+|++.++.+||+|||+++..          ....|.|
T Consensus       119 ~~----~L~d~H~q~f~YQiLrgLKyiHS--AnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRW  192 (359)
T KOG0660|consen  119 QQ----DLTDDHAQYFLYQILRGLKYIHS--ANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRW  192 (359)
T ss_pred             Cc----cccHHHHHHHHHHHHHhcchhhc--ccccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeee
Confidence            53    39999999999999999999999  55999999999999999999999999999863          3456899


Q ss_pred             ccccccCC---CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          150 ATRQTYGR---PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       150 y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |.|||+..   .++.          +.||++|+.-|.++..-.+
T Consensus       193 YRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Q  236 (359)
T KOG0660|consen  193 YRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQ  236 (359)
T ss_pred             ecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHH
Confidence            99999732   2322          6799999999987755433

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.96  E-value=5.8e-29  Score=201.81  Aligned_cols=167  Identities=11%  Similarity=0.119  Sum_probs=136.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+....... ......+.+|+.++..++|++|+.+++++.+.+    .+++||+|+++++|..++....
T Consensus        21 ~~~~~~~~avK~~~~~~~~~-~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~~~~~~   95 (285)
T cd05631          21 VRATGKMYACKKLEKKRIKK-RKGEAMALNEKRILEKVNSRFVVSLAYAYETKD----ALCLVLTIMNGGDLKFHIYNMG   95 (285)
T ss_pred             EecCCceEEEEEeeHhhhhh-hhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCC----eEEEEEEecCCCcHHHHHHhhC
Confidence            35689999999987432221 223456788999999999999999999887644    5899999999999998886543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      .  ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....||..|+|||
T Consensus        96 ~--~~~~~~~~~~~~~qi~~~l~~lH~--~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE  171 (285)
T cd05631          96 N--PGFDEQRAIFYAAELCCGLEDLQR--ERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPE  171 (285)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHh--CCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHh
Confidence            2  358999999999999999999999  7799999999999999999999999998864       3456899999999


Q ss_pred             cCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          155 YGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +..  .++.          +|++++|+.||.....
T Consensus       172 ~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~  206 (285)
T cd05631         172 VINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKE  206 (285)
T ss_pred             hhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCc
Confidence            732  2222          7999999999987654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4e-29  Score=209.38  Aligned_cols=166  Identities=14%  Similarity=0.210  Sum_probs=136.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~----~~~lv~E~~~~g~L~~~l~~~-   95 (364)
T cd05599          22 KKDTGHIYAMKKLRKSEML-EKEQVAHVRAERDILAEADNPWVVKLYYSFQDEN----YLYLIMEYLPGGDMMTLLMKK-   95 (364)
T ss_pred             ECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC----eEEEEECCCCCcHHHHHHHHc-
Confidence            4568999999999743211 1234456788999999999999999999987754    699999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-------------------  142 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-------------------  142 (218)
                         ..+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++...                   
T Consensus        96 ---~~l~~~~~~~~~~qi~~aL~~lH~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~  170 (364)
T cd05599          96 ---DTFTEEETRFYIAETILAIDSIHK--LGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSN  170 (364)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeEeccCCHHHeEECCCCCEEEeecccceecccccccccccccccccccc
Confidence               348999999999999999999999  77999999999999999999999999987531                   


Q ss_pred             ---------------------------cCCCcccccccccCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          143 ---------------------------ENKKYLSATRQTYGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       143 ---------------------------~~~~t~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                                                 ...||+.|+|||+..  .++.          +|+|++|..||......
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~  245 (364)
T cd05599         171 FLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQ  245 (364)
T ss_pred             ccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHH
Confidence                                       235899999999622  1111          79999999999866543

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0586|consensus

Probab=99.96  E-value=1.3e-29  Score=214.68  Aligned_cols=167  Identities=22%  Similarity=0.306  Sum_probs=144.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..||..||||+++..  .......+.+.+|+++|..++|||||+++++.....    .+|+||||+.+|.+.+++..+.
T Consensus        77 ~~~t~~~VaiK~idkt--~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~----~lylV~eya~~ge~~~yl~~~g  150 (596)
T KOG0586|consen   77 HILTGTEVAIKIIDKT--QLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEA----TLYLVMEYASGGELFDYLVKHG  150 (596)
T ss_pred             ecCCCceEEEEEehhc--ccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecc----eeEEEEEeccCchhHHHHHhcc
Confidence            4568999999999854  333555667999999999999999999999987755    4999999999999999999875


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      +    ..+..+..++.|+++|++|||+  +.|+|||||++|||++.+.+++|+|||++..       .+.+|++.|.|||
T Consensus       151 r----~~e~~ar~~F~q~vsaveYcH~--k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPE  224 (596)
T KOG0586|consen  151 R----MKEKEARAKFRQIVSAVEYCHS--KNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPE  224 (596)
T ss_pred             c----chhhhhhhhhHHHHHHHHHHhh--cceeccccchhhcccccccceeeeccccceeecccccccccCCCCCccChH
Confidence            4    6678999999999999999999  7799999999999999999999999999987       7889999999999


Q ss_pred             c--CCCCch-----------hhhhhhCCCCCCcchhhhh
Q psy238          155 Y--GRPISG-----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       155 ~--~~~~~~-----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      +  +..+..           +|-+++|..||++..-.+-
T Consensus       225 l~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~L  263 (596)
T KOG0586|consen  225 LFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKEL  263 (596)
T ss_pred             hhcCcccCCcceehhhhhhhheeeeecccccCCcccccc
Confidence            7  222222           6889999999997765443

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.96  E-value=5.2e-29  Score=207.19  Aligned_cols=162  Identities=17%  Similarity=0.198  Sum_probs=134.3

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||+|.+..... ........+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++....    
T Consensus        56 ~~~vavK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~----~~~lv~Ey~~~g~L~~~i~~~~----  126 (340)
T PTZ00426         56 FPPVAIKRFEKSKI-IKQKQVDHVFSERKILNYINHPFCVNLYGSFKDES----YLYLVLEFVIGGEFFTFLRRNK----  126 (340)
T ss_pred             CeEEEEEEEEHHHh-hhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCC----EEEEEEeCCCCCcHHHHHHHcC----
Confidence            36899999874321 11334567889999999999999999999997644    6999999999999999998653    


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccC--CC
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYG--RP  158 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~--~~  158 (218)
                      .+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..     ....||+.|+|||+.  ..
T Consensus       127 ~~~~~~~~~~~~qi~~aL~~LH~--~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~  204 (340)
T PTZ00426        127 RFPNDVGCFYAAQIVLIFEYLQS--LNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVG  204 (340)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH--CCeEccCCCHHHEEECCCCCEEEecCCCCeecCCCcceecCChhhcCHHHHhCCC
Confidence            48999999999999999999999  7799999999999999999999999999864     345789999999972  11


Q ss_pred             Cch----------hhhhhhCCCCCCcchhh
Q psy238          159 ISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       159 ~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ++.          +|+|++|..||......
T Consensus       205 ~~~~~DiwSlGvil~ell~G~~Pf~~~~~~  234 (340)
T PTZ00426        205 HGKAADWWTLGIFIYEILVGCPPFYANEPL  234 (340)
T ss_pred             CCccccccchhhHHHHHhcCCCCCCCCCHH
Confidence            111          79999999999876543

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.96  E-value=5.3e-29  Score=208.49  Aligned_cols=167  Identities=14%  Similarity=0.192  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+..|+.++..++||+|+++++++.+..    .+|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~-   95 (360)
T cd05627          22 KKDTGHIYAMKILRKADM-LEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKR----NLYLIMEFLPGGDMMTLLMKK-   95 (360)
T ss_pred             ECCCCCEEEEEEEEHHHH-hhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC----EEEEEEeCCCCccHHHHHHhc-
Confidence            356889999999974321 11334567888999999999999999999987643    699999999999999999765 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------------------  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------------------  141 (218)
                         ..+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..                    
T Consensus        96 ---~~l~~~~~~~~~~qi~~~L~~lH~--~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~  170 (360)
T cd05627          96 ---DTLSEEATQFYIAETVLAIDAIHQ--LGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSD  170 (360)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCccc
Confidence               348999999999999999999999  7799999999999999999999999998652                    


Q ss_pred             -----------------------ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          142 -----------------------IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       142 -----------------------~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                                             ....||+.|+|||+  +..++.          +|+|++|..||......+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~  243 (360)
T cd05627         171 FSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQE  243 (360)
T ss_pred             ccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCHHH
Confidence                                   12468999999997  222222          799999999998765543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.96  E-value=9.6e-29  Score=204.21  Aligned_cols=167  Identities=17%  Similarity=0.189  Sum_probs=135.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++...... .......+..|+.++..++||||+.+++++....    .+|+||||+++++|..++... 
T Consensus        16 ~~~~~~~~a~K~~~~~~~~-~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~----~~~lv~E~~~~~~L~~~l~~~-   89 (325)
T cd05594          16 EKATGRYYAMKILKKEVIV-AKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD----RLCFVMEYANGGELFFHLSRE-   89 (325)
T ss_pred             ECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCC----EEEEEEeCCCCCcHHHHHHhc-
Confidence            4568999999999743211 1234456778999999999999999999887644    699999999999999988754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.||+.||.|||+. .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+||
T Consensus        90 ---~~l~~~~~~~~~~qi~~aL~~lH~~-~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (325)
T cd05594          90 ---RVFSEDRARFYGAEIVSALDYLHSE-KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAP  165 (325)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHhc-CCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCH
Confidence               3489999999999999999999961 3599999999999999999999999998753        234689999999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.  ..++.          +|++++|..||.....+
T Consensus       166 E~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~  202 (325)
T cd05594         166 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE  202 (325)
T ss_pred             HHHccCCCCCccccccccceeeeeccCCCCCCCCCHH
Confidence            972  22222          79999999999766543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.96  E-value=9.3e-29  Score=207.88  Aligned_cols=165  Identities=13%  Similarity=0.137  Sum_probs=135.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++..... ........+..|+.+++.++||||+++++++.+..    .+|+||||+++++|.+++... 
T Consensus        64 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~----~~~lv~Ey~~gg~L~~~l~~~-  137 (370)
T cd05621          64 HKSSQKVYAMKLLSKFEM-IKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK----YLYMVMEYMPGGDLVNLMSNY-  137 (370)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC----EEEEEEcCCCCCcHHHHHHhc-
Confidence            356789999999974211 11233456788999999999999999999987643    699999999999999999653 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          .+++..+..++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..         ....||+.|+|
T Consensus       138 ----~~~~~~~~~~~~qil~aL~~LH~--~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~a  211 (370)
T cd05621         138 ----DVPEKWAKFYTAEVVLALDAIHS--MGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYIS  211 (370)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeEecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCC
Confidence                38899999999999999999999  7799999999999999999999999998864         24568999999


Q ss_pred             cccCC--C----Cch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYGR--P----ISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~--~----~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+..  .    ++.          +|+|++|..||......
T Consensus       212 PE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~  253 (370)
T cd05621         212 PEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLV  253 (370)
T ss_pred             HHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHH
Confidence            99622  1    111          79999999999866543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.96  E-value=1.3e-28  Score=199.29  Aligned_cols=169  Identities=14%  Similarity=0.131  Sum_probs=136.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+...... .......+..|+.+++.++||||+.+++++....    .+|+||||+++++|..++....
T Consensus        14 ~~~~~~~~avK~~~~~~~~-~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~g~L~~~~~~~~   88 (280)
T cd05608          14 MRATGKLYACKKLNKKRLK-KRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKT----DLCLVMTIMNGGDLRYHIYNVD   88 (280)
T ss_pred             EccCCcEEEEEeeeHHHHh-hhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCC----eEEEEEeCCCCCCHHHHHHhcc
Confidence            4568999999998743211 1223456778999999999999999998886643    5899999999999998886543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .....+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+||
T Consensus        89 ~~~~~l~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aP  166 (280)
T cd05608          89 EENPGFPEPRACFYTAQIISGLEHLHQ--RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAP  166 (280)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCH
Confidence            333569999999999999999999999  7799999999999999999999999998864        234688999999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+.  ..++.          +|++++|..||.....
T Consensus       167 E~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~  202 (280)
T cd05608         167 ELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGE  202 (280)
T ss_pred             HHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCc
Confidence            972  22222          7999999999976543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG4717|consensus

Probab=99.96  E-value=4.6e-29  Score=208.13  Aligned_cols=170  Identities=18%  Similarity=0.265  Sum_probs=144.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..||+.||||++....  ........+.+|+.-|+.++|||||+||.+.-..    ..+|+|+|+-++|+|.+||-.+.
T Consensus        39 HVFTGekVAVKviDKTK--lD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQ----TKlyLiLELGD~GDl~DyImKHe  112 (864)
T KOG4717|consen   39 HVFTGEKVAVKVIDKTK--LDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQ----TKLYLILELGDGGDLFDYIMKHE  112 (864)
T ss_pred             hhcccceeEEEEecccc--cchhhhhHHHHHHHHHHHhcCcCeeeeeehhccc----ceEEEEEEecCCchHHHHHHhhh
Confidence            35689999999998643  2345567889999999999999999999987442    36999999999999999998876


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-CCcEEEeecCcccc-------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT-------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~-------~~~~~t~~y~aP  153 (218)
                      .   .+.++.+..||+||+.|+.|||..  .+|||||||+|+++.+ -|.++|.|||++..       .+.+|++.|-||
T Consensus       113 ~---Gl~E~La~kYF~QI~~AI~YCHqL--HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAP  187 (864)
T KOG4717|consen  113 E---GLNEDLAKKYFAQIVHAISYCHQL--HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAP  187 (864)
T ss_pred             c---cccHHHHHHHHHHHHHHHHHHhhh--hhhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhhccCc
Confidence            3   499999999999999999999995  4999999999998865 49999999999865       788999999999


Q ss_pred             cc--CCCCch-----------hhhhhhCCCCCCcchhhhhHH
Q psy238          154 TY--GRPISG-----------QYEIVTKTNNVTEKKKEKEEE  182 (218)
Q Consensus       154 E~--~~~~~~-----------~~ei~tg~~p~~~~~~ee~~~  182 (218)
                      |+  |..++.           +|.+++|+.||.+..+.|..-
T Consensus       188 EILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLT  229 (864)
T KOG4717|consen  188 EILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLT  229 (864)
T ss_pred             hhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhh
Confidence            96  444433           799999999999887776543

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.96  E-value=1.3e-28  Score=203.29  Aligned_cols=166  Identities=20%  Similarity=0.270  Sum_probs=132.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHH-HhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFE-NLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~-~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++....... ......+..|.. +++.++||||+++++++....    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~vaiK~~~~~~~~~-~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~   90 (323)
T cd05575          16 HKADGKFYAVKVLQKKAILK-KKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTAD----KLYFVLDYVNGGELFFHLQRE   90 (323)
T ss_pred             ECCCCCEEEEEEEEHHHHhh-hhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCC----EEEEEEcCCCCCCHHHHHHhc
Confidence            45689999999997432211 222344555544 567889999999999887643    689999999999999998764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ----~~~~~~~~~~~~~qi~~~l~~lH~--~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a  164 (323)
T cd05575          91 ----RSFPEPRARFYAAEIASALGYLHS--LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLA  164 (323)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcC
Confidence                348999999999999999999999  7799999999999999999999999998754        23468999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+..  .++.          +|+|++|..||.....+
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~  202 (323)
T cd05575         165 PEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTA  202 (323)
T ss_pred             hhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHH
Confidence            99722  2221          79999999999876543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=9.7e-29  Score=203.55  Aligned_cols=164  Identities=16%  Similarity=0.198  Sum_probs=135.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++.....  .......+..|+.++..++||||+++++++...+    .+|+||||+++++|.+++... 
T Consensus        20 ~~~~~~~~aiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   92 (318)
T cd05582          20 GPDAGQLYAMKVLKKATL--KVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEG----KLYLILDFLRGGDLFTRLSKE-   92 (318)
T ss_pred             cCCCCCEEEEEEEEHHHh--hhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCC----EEEEEEcCCCCCcHHHHHHHc-
Confidence            346889999999984321  1233456778999999999999999999987643    689999999999999998754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....|++.|+||
T Consensus        93 ---~~l~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aP  167 (318)
T cd05582          93 ---VMFTEEDVKFYLAELALALDHLHS--LGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAP  167 (318)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCH
Confidence               348999999999999999999999  6799999999999999999999999998764        234678999999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..  .++.          +|+|++|..||.....
T Consensus       168 E~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~  203 (318)
T cd05582         168 EVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDR  203 (318)
T ss_pred             HHHcCCCCCCccceeccceEeeeeccCCCCCCCCCH
Confidence            9722  2221          6999999999976544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0658|consensus

Probab=99.96  E-value=2.4e-30  Score=207.73  Aligned_cols=167  Identities=20%  Similarity=0.314  Sum_probs=137.1

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCC-CCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND-KPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      .++++.||||.+-....        --.+|+++|+.+.|||||+|.-+|....++ .-.+.+||||++ .+|..+++...
T Consensus        46 ~e~~~~vAIKKv~~d~r--------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP-~tL~~~~r~~~  116 (364)
T KOG0658|consen   46 RETEEEVAIKKVLQDKR--------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMP-ETLYRVIRHYT  116 (364)
T ss_pred             cCCCceeEEEEecCCCC--------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhch-HHHHHHHHHHh
Confidence            46789999998864311        234689999999999999999888776654 335669999996 69999999876


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc-------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT-------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~-------~~~~~t~~y~aP  153 (218)
                      .+...+|.-.+.-+..||+.||.|||+  .+|+||||||.|+|+|.+ |.+||||||.|..       .+...|..|.||
T Consensus       117 ~~~~~mp~~~iKLYt~Qlfrgl~yLh~--~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaP  194 (364)
T KOG0658|consen  117 RANQRMPLLEIKLYTYQLFRGLAYLHS--HGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAP  194 (364)
T ss_pred             hcCCCCceeeeHHHHHHHHHHHHHHHh--cCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEEeccccCH
Confidence            666779999999999999999999999  779999999999999987 9999999999876       455678899999


Q ss_pred             cc--CC-CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          154 TY--GR-PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       154 E~--~~-~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+  |. .++.          +.|++-|..-|.+.+.-.+
T Consensus       195 ELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQ  234 (364)
T KOG0658|consen  195 ELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQ  234 (364)
T ss_pred             HHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHH
Confidence            97  22 2222          7899999999988665444

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=1.7e-28  Score=212.56  Aligned_cols=162  Identities=20%  Similarity=0.229  Sum_probs=134.6

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||+|.+...    .......+..|+.+|..++||||++++++|...+    .+|+||||+++++|.+++........
T Consensus        93 ~~~vv~K~~~~~----~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~~~~~~  164 (478)
T PTZ00267         93 KEKVVAKFVMLN----DERQAAYARSELHCLAACDHFGIVKHFDDFKSDD----KLLLIMEYGSGGDLNKQIKQRLKEHL  164 (478)
T ss_pred             CeEEEEEEcccC----CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECC----EEEEEEECCCCCCHHHHHHHHHhccC
Confidence            678999977532    2344566788999999999999999999997654    69999999999999999876544445


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY  155 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~  155 (218)
                      ++++..+..++.|++.||.|||+  ++|+||||||+|||++.++.++|+|||++..          ....||+.|+|||+
T Consensus       165 ~l~~~~~~~i~~qi~~aL~~lH~--~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~  242 (478)
T PTZ00267        165 PFQEYEVGLLFYQIVLALDEVHS--RKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPEL  242 (478)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhH
Confidence            68999999999999999999999  7799999999999999999999999999864          23358999999997


Q ss_pred             C--CCCch----------hhhhhhCCCCCCcchh
Q psy238          156 G--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      .  ..++.          +++|++|..||.....
T Consensus       243 ~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~  276 (478)
T PTZ00267        243 WERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ  276 (478)
T ss_pred             hCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            3  22222          6899999999976544

>KOG0197|consensus

Probab=99.96  E-value=3.6e-29  Score=209.17  Aligned_cols=166  Identities=22%  Similarity=0.264  Sum_probs=137.4

Q ss_pred             CCCc-EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGV-EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~-~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .+|. .||+|.+...     ....+.+.+|+++|.+|+|++||+|+++|....+    +|||||||+.|+|.++|.... 
T Consensus       227 ~~~~~~vavk~ik~~-----~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~p----iyIVtE~m~~GsLl~yLr~~~-  296 (468)
T KOG0197|consen  227 WNGSTKVAVKTIKEG-----SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEP----IYIVTEYMPKGSLLDYLRTRE-  296 (468)
T ss_pred             EcCCCcccceEEecc-----ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCc----eEEEEEecccCcHHHHhhhcC-
Confidence            4455 7999999843     2344677899999999999999999999987553    999999999999999999843 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQ  153 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aP  153 (218)
                       +..+.....+.|+.|||.|++||.+  +++|||||..+||||+++..+||+|||+++.         ....-...|.||
T Consensus       297 -~~~l~~~~Ll~~a~qIaeGM~YLes--~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAP  373 (468)
T KOG0197|consen  297 -GGLLNLPQLLDFAAQIAEGMAYLES--KNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAP  373 (468)
T ss_pred             -CCccchHHHHHHHHHHHHHHHHHHh--CCccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCH
Confidence             3569999999999999999999999  7799999999999999999999999999986         233446789999


Q ss_pred             ccCC--CCch----------hhhhhh-CCCCCCcchhhhhHH
Q psy238          154 TYGR--PISG----------QYEIVT-KTNNVTEKKKEKEEE  182 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~t-g~~p~~~~~~ee~~~  182 (218)
                      |...  .++.          ++||+| |+.||.+....+.-+
T Consensus       374 Ea~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~  415 (468)
T KOG0197|consen  374 EALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLE  415 (468)
T ss_pred             HHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHH
Confidence            9622  3333          677766 888888887766543

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.96  E-value=1.7e-28  Score=202.47  Aligned_cols=167  Identities=14%  Similarity=0.176  Sum_probs=135.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++..... ........+..|..++..+ +||||+.+++++....    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~----~~~lv~E~~~~~~L~~~l~~~   90 (321)
T cd05591          16 LKGTDEVYAIKVLKKDVI-LQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKD----RLFFVMEYVNGGDLMFQIQRS   90 (321)
T ss_pred             ECCCCCEEEEEEEeHHHh-hhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC----eEEEEEeCCCCCcHHHHHHHc
Confidence            356789999999974321 1123445667788888766 8999999999997654    689999999999999998765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ~----~~~~~~~~~~~~qi~~aL~~LH~--~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~a  164 (321)
T cd05591          91 R----KFDEPRSRFYAAEVTLALMFLHR--HGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIA  164 (321)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHHHeEECCCCCEEEeecccceecccCCccccccccCccccC
Confidence            3    48999999999999999999999  7799999999999999999999999998764        33468999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+..  .++.          +|+|++|..||.....++
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~  203 (321)
T cd05591         165 PEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDD  203 (321)
T ss_pred             HHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHH
Confidence            99622  2222          799999999998765443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.96  E-value=1.3e-28  Score=203.79  Aligned_cols=162  Identities=17%  Similarity=0.213  Sum_probs=134.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++.... .........+..|+.++..+ +||||++++++|.+..    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~~aiK~i~~~~-~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~~~~~   90 (329)
T cd05588          16 LKKTRRIYAMKVIKKEL-VNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTES----RLFFVIEFVSGGDLMFHMQRQ   90 (329)
T ss_pred             ECCCCCEEEEEEEEHHH-hhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCC----EEEEEEeCCCCCCHHHHHHHc
Confidence            35678999999998432 11233445678899999888 7999999999987654    689999999999999988754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ----~~l~~~~~~~~~~qi~~~l~~lH~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~a  164 (329)
T cd05588          91 ----RKLPEEHARFYSAEISLALNFLHE--RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIA  164 (329)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCccccC
Confidence                349999999999999999999999  7799999999999999999999999998753        34578999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCc
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~  174 (218)
                      ||+.  ..++.          +|++++|+.||+.
T Consensus       165 PE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  198 (329)
T cd05588         165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             HHHHcCCCCCCccceechHHHHHHHHHCCCCccc
Confidence            9972  22221          7999999999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.96  E-value=1.5e-28  Score=202.79  Aligned_cols=167  Identities=16%  Similarity=0.200  Sum_probs=135.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++..... ........+..|+.++..+ +||||+++++++....    .+|+||||+++++|.+++...
T Consensus        16 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~----~~~iv~Ey~~~g~L~~~i~~~   90 (320)
T cd05590          16 LKESGRLYAVKVLKKDVI-LQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPD----RLFFVMEFVNGGDLMFHIQKS   90 (320)
T ss_pred             EcCCCCEEEEEEEEHHHH-hhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCC----EEEEEEcCCCCchHHHHHHHc
Confidence            456889999999974311 1123445667788888776 7999999999987644    689999999999999988765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ~----~l~~~~~~~~~~ql~~~L~~lH~--~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a  164 (320)
T cd05590          91 R----RFDEARARFYAAEITSALMFLHD--KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIA  164 (320)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccC
Confidence            3    48999999999999999999999  7799999999999999999999999998764        33568999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+..  .++.          +|++++|..||......+
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~  203 (320)
T cd05590         165 PEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDD  203 (320)
T ss_pred             HHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH
Confidence            99722  2111          799999999998765443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0986|consensus

Probab=99.96  E-value=5.3e-30  Score=210.58  Aligned_cols=166  Identities=14%  Similarity=0.175  Sum_probs=139.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..||..||+|.+... +..........++|-.||+.++.|+||.+-..|...+    .+|+||..|.||+|.-.|.+.+.
T Consensus       207 raTGKMYAcKkL~KK-RiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd----~LClVLtlMNGGDLkfHiyn~g~  281 (591)
T KOG0986|consen  207 RATGKMYACKKLDKK-RIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKD----ALCLVLTLMNGGDLKFHIYNHGN  281 (591)
T ss_pred             ecchhhHHHHHHHHH-HHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCC----ceEEEEEeecCCceeEEeeccCC
Confidence            357888888887643 2222445567789999999999999999988887765    59999999999999999988764


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQTY  155 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE~  155 (218)
                        ..|++..++.|+.+|+.||.+||+  .+||+|||||+|||+|+.|+++|+|+|++..       ...+||.+|||||+
T Consensus       282 --~gF~e~ra~FYAAEi~cGLehlH~--~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEv  357 (591)
T KOG0986|consen  282 --PGFDEQRARFYAAEIICGLEHLHR--RRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEV  357 (591)
T ss_pred             --CCCchHHHHHHHHHHHhhHHHHHh--cceeeccCChhheeeccCCCeEeeccceEEecCCCCccccccCcccccCHHH
Confidence              569999999999999999999999  7799999999999999999999999999865       55699999999997


Q ss_pred             CC--CCch----------hhhhhhCCCCCCcchh
Q psy238          156 GR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       156 ~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ..  .++.          +|+|+.|..||....+
T Consensus       358 l~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~Ke  391 (591)
T KOG0986|consen  358 LQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKE  391 (591)
T ss_pred             HcCCcccCCccHHHHHhHHHHHHcccCchhhhhh
Confidence            22  2222          7999999999965443

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.96  E-value=1.8e-28  Score=202.60  Aligned_cols=166  Identities=19%  Similarity=0.250  Sum_probs=132.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHH-HhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFE-NLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~-~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|++....... ......+..|.. +++.++||||+++++++...+    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~   90 (325)
T cd05604          16 RKLDGKCYAVKVLQKKIVLN-RKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTE----KLYFVLDFVNGGELFFHLQRE   90 (325)
T ss_pred             ECCCCCEEEEEEEEHHHhhh-hhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCC----EEEEEEcCCCCCCHHHHHHHc
Confidence            45689999999997432111 223344555554 467789999999999887644    589999999999999888754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..+..++.||+.||.|||+  .||+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ----~~~~~~~~~~~~~qi~~al~~lH~--~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a  164 (325)
T cd05604          91 ----RSFPEPRARFYAAEIASALGYLHS--INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLA  164 (325)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCC
Confidence                348999999999999999999999  7799999999999999999999999998764        23468999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+.  ..++.          +|+|++|..||......
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~  202 (325)
T cd05604         165 PEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVA  202 (325)
T ss_pred             HHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHH
Confidence            9972  22222          79999999999766543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.96  E-value=2e-28  Score=205.83  Aligned_cols=165  Identities=13%  Similarity=0.150  Sum_probs=134.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++..... ........+..|+.++..++||||+++++++.+..    .+|+||||+++++|.+++... 
T Consensus        64 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~----~~~lv~Ey~~gg~L~~~l~~~-  137 (370)
T cd05596          64 HKSSKQVYAMKLLSKFEM-IKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDK----YLYMVMEYMPGGDLVNLMSNY-  137 (370)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCC----EEEEEEcCCCCCcHHHHHHhc-
Confidence            456889999999974211 11233455778999999999999999999887644    699999999999999998653 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          .+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....||+.|+|
T Consensus       138 ----~l~~~~~~~~~~qi~~aL~~LH~--~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~a  211 (370)
T cd05596         138 ----DIPEKWARFYTAEVVLALDAIHS--MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYIS  211 (370)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeEC
Confidence                38899999999999999999999  7799999999999999999999999998754         23568999999


Q ss_pred             cccCCC------Cch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYGRP------ISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~~------~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+...      ++.          +|+|++|..||.+....
T Consensus       212 PE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~  253 (370)
T cd05596         212 PEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV  253 (370)
T ss_pred             HHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHH
Confidence            996221      111          79999999999876543

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>PHA02988 hypothetical protein; Provisional

Probab=99.96  E-value=3.3e-28  Score=197.43  Aligned_cols=169  Identities=20%  Similarity=0.232  Sum_probs=138.2

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||||.+.... .........+.+|+.+|..++||||+++++++.+...+...+++||||+++|+|.+++...   
T Consensus        41 ~~~~~vavK~~~~~~-~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~---  116 (283)
T PHA02988         41 FNNKEVIIRTFKKFH-KGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKE---  116 (283)
T ss_pred             ECCEEEEEEeccccc-cccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhC---
Confidence            468899999997532 2223345678899999999999999999999877333335689999999999999999864   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccCC-
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYGR-  157 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~~-  157 (218)
                       ..+++.....++.|++.||.|||+. .+++||||+|+|||++.++.++|+|||++..     ....++..|+|||+.. 
T Consensus       117 -~~~~~~~~~~i~~~i~~~l~~lH~~-~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~  194 (283)
T PHA02988        117 -KDLSFKTKLDMAIDCCKGLYNLYKY-TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLND  194 (283)
T ss_pred             -CCCChhHHHHHHHHHHHHHHHHHhc-CCCCCCcCChhhEEECCCCcEEEcccchHhhhccccccccCcccccCHHHhhh
Confidence             3488999999999999999999983 2599999999999999999999999999874     3456889999999842 


Q ss_pred             ---CCch----------hhhhhhCCCCCCcchhh
Q psy238          158 ---PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       158 ---~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                         .++.          +|+|++|..||......
T Consensus       195 ~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~  228 (283)
T PHA02988        195 IFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTK  228 (283)
T ss_pred             ccccccchhhhhHHHHHHHHHHHCCCCCCCCCHH
Confidence               2222          69999999999876543

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.96  E-value=2.5e-28  Score=205.30  Aligned_cols=164  Identities=13%  Similarity=0.144  Sum_probs=134.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++...... .......+.+|+.++..++||||+++++++....    .+|+||||+++++|.+++... 
T Consensus        64 ~~~~~~~~aiK~i~~~~~~-~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~----~~~lv~Ey~~gg~L~~~~~~~-  137 (371)
T cd05622          64 HKSTRKVYAMKLLSKFEMI-KRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR----YLYMVMEYMPGGDLVNLMSNY-  137 (371)
T ss_pred             ECCCCcEEEEEEEEHHHhh-hhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC----EEEEEEcCCCCCcHHHHHHhc-
Confidence            4568899999998743211 1233456778999999999999999999987643    699999999999999998653 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          .+++..+..++.||+.||.|||+  ++|+||||+|+|||++.++.++|+|||++..         ....||+.|+|
T Consensus       138 ----~~~~~~~~~~~~qi~~aL~~LH~--~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~a  211 (371)
T cd05622         138 ----DVPEKWARFYTAEVVLALDAIHS--MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYIS  211 (371)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccC
Confidence                38899999999999999999999  7799999999999999999999999998854         24568999999


Q ss_pred             cccCC--C----Cch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR--P----ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~--~----~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+..  .    ++.          +|+|++|..||.....
T Consensus       212 PE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~  252 (371)
T cd05622         212 PEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL  252 (371)
T ss_pred             HHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCH
Confidence            99722  1    111          7999999999986554

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.96  E-value=2.5e-28  Score=201.30  Aligned_cols=165  Identities=19%  Similarity=0.234  Sum_probs=131.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHH-HhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFE-NLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~-~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|++....... ......+..|+. +++.++||||+++++++.+..    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~   90 (321)
T cd05603          16 RKSDGSFYAVKVLQKKTILK-KKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAE----KLYFVLDYVNGGELFFHLQRE   90 (321)
T ss_pred             ECCCCCEEEEEEEEHHHHHH-hhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCC----EEEEEEcCCCCCCHHHHHHHc
Confidence            45678999999997432111 223344555554 578899999999999887644    689999999999999888754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ----~~~~~~~~~~~~~qi~~~L~~lH~--~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a  164 (321)
T cd05603          91 ----RCFLEPRARFYAAEVASAIGYLHS--LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLA  164 (321)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCC
Confidence                348899999999999999999999  7799999999999999999999999998764        23468899999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+.  ..++.          +|+|++|..||.....
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  201 (321)
T cd05603         165 PEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDV  201 (321)
T ss_pred             HHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCH
Confidence            9962  22221          7999999999977644

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.96  E-value=2.6e-28  Score=202.06  Aligned_cols=163  Identities=15%  Similarity=0.189  Sum_probs=134.0

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|..||+|++..............+..|+.++..+ +||+|+.+++++....    .+++||||+++++|.+++....
T Consensus        25 ~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~  100 (332)
T cd05614          25 HDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEA----KLHLILDYVSGGEMFTHLYQRD  100 (332)
T ss_pred             CCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCC----EEEEEEeCCCCCcHHHHHHHcC
Confidence            4678999999997432222233456678899999999 5899999999887643    5899999999999999987643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          .+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....||+.|+|
T Consensus       101 ----~~~~~~~~~~~~qi~~~l~~lH~--~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~a  174 (332)
T cd05614         101 ----NFSEDEVRFYSGEIILALEHLHK--LGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMA  174 (332)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccC
Confidence                48999999999999999999999  7799999999999999999999999998764         23568999999


Q ss_pred             cccCC--C-Cch----------hhhhhhCCCCCCcc
Q psy238          153 QTYGR--P-ISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       153 PE~~~--~-~~~----------~~ei~tg~~p~~~~  175 (218)
                      ||+..  . .+.          +|++++|..||...
T Consensus       175 PE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  210 (332)
T cd05614         175 PEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLE  210 (332)
T ss_pred             HHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCC
Confidence            99622  1 111          79999999999754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.96  E-value=3.7e-28  Score=200.05  Aligned_cols=166  Identities=14%  Similarity=0.181  Sum_probs=132.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...... .......+..|..++..+ +||||+++++++....    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~----~~~lv~e~~~gg~L~~~~~~~   90 (316)
T cd05592          16 LKGTNEFFAIKALKKDVVL-EDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKE----HLFFVMEYLNGGDLMFHIQSS   90 (316)
T ss_pred             ECCCCCEEEEEEEEHHHhh-hhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCC----EEEEEEcCCCCCcHHHHHHHc
Confidence            3567889999999743211 122334555666666654 8999999999987643    699999999999999998764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ~----~~~~~~~~~~~~qi~~al~~LH~--~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~a  164 (316)
T cd05592          91 G----RFDEARARFYAAEIICGLQFLHK--KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIA  164 (316)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccC
Confidence            3    48999999999999999999999  7799999999999999999999999998864        33568999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+.  ..++.          ++++++|..||.+....
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~  202 (316)
T cd05592         165 PEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDED  202 (316)
T ss_pred             HHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHH
Confidence            9972  22222          79999999999876543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.96  E-value=3.3e-28  Score=201.01  Aligned_cols=167  Identities=19%  Similarity=0.230  Sum_probs=131.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHH-HhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFE-NLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~-~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|++....... ......+..|.. ++..+.||||+++++++...+    .+|+||||+++++|.+++...
T Consensus        16 ~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~   90 (325)
T cd05602          16 HKAEEKFYAVKVLQKKAILK-KKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD----KLYFVLDYINGGELFYHLQRE   90 (325)
T ss_pred             ECCCCCEEEEEEEEHHHHHh-hhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCC----eEEEEEeCCCCCcHHHHHHhc
Confidence            45678899999997432111 122234444443 567889999999999987654    589999999999999999764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..+..++.||+.||.|||+  .||+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ----~~~~~~~~~~~~~qi~~~L~~lH~--~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~a  164 (325)
T cd05602          91 ----RCFLEPRARFYAAEIASALGYLHS--LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLA  164 (325)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccC
Confidence                348889999999999999999999  7799999999999999999999999998763        33568999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+.  ..++.          +|+|++|..||......+
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~  203 (325)
T cd05602         165 PEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE  203 (325)
T ss_pred             HHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHH
Confidence            9962  22221          799999999998665443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.96  E-value=3.3e-28  Score=201.47  Aligned_cols=162  Identities=19%  Similarity=0.229  Sum_probs=133.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|++..... ........+..|+.++..+ +||||+++++++....    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~----~~~lv~E~~~~~~L~~~~~~~   90 (329)
T cd05618          16 LKKTERIYAMKVVKKELV-NDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES----RLFFVIEYVNGGDLMFHMQRQ   90 (329)
T ss_pred             ECCCCCEEEEEEEEhhHh-cchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCC----EEEEEEeCCCCCCHHHHHHHc
Confidence            456889999999984321 1233455677888888776 8999999999987644    689999999999999888754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ----~~l~~~~~~~i~~qi~~~l~~lH~--~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a  164 (329)
T cd05618          91 ----RKLPEEHARFYSAEISLALNYLHE--RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIA  164 (329)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccC
Confidence                349999999999999999999999  7799999999999999999999999998764        23568999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCc
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~  174 (218)
                      ||+.  ..++.          +|++++|..||..
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  198 (329)
T cd05618         165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             HHHHcCCCCCCccceecccHHHHHHhhCCCCCcc
Confidence            9972  22221          7999999999963

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0690|consensus

Probab=99.96  E-value=1.2e-29  Score=201.39  Aligned_cols=168  Identities=18%  Similarity=0.190  Sum_probs=142.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      .+.+|+.||+|+++..-. -........+.|-.+|+..+||++..|-..|...+    ++|+||||+.||.|.-.|....
T Consensus       189 EKat~k~YAiKIlkKevi-iakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~d----rlCFVMeyanGGeLf~HLsrer  263 (516)
T KOG0690|consen  189 EKATGKLYAIKILKKEVI-IAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQD----RLCFVMEYANGGELFFHLSRER  263 (516)
T ss_pred             ecccCceeehhhhhhhhe-eehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCc----eEEEEEEEccCceEeeehhhhh
Confidence            367899999999985322 22445566778889999999999999977776544    7999999999999998888764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .++++.++.+-..|++||.|||+  ++||.||||.+|+|+|.+|+++|+|||++.-        .+.+||+.|+||
T Consensus       264 ----~FsE~RtRFYGaEIvsAL~YLHs--~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAP  337 (516)
T KOG0690|consen  264 ----VFSEDRTRFYGAEIVSALGYLHS--RNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAP  337 (516)
T ss_pred             ----cccchhhhhhhHHHHHHhhhhhh--CCeeeeechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCc
Confidence                39999999999999999999999  7799999999999999999999999999865        678999999999


Q ss_pred             ccCCCCch------------hhhhhhCCCCCCcchhhhh
Q psy238          154 TYGRPISG------------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       154 E~~~~~~~------------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+....+.            +|||++|+.||.....++.
T Consensus       338 EVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kL  376 (516)
T KOG0690|consen  338 EVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKL  376 (516)
T ss_pred             hhhccccccceeehhhhhHHHHHHHhccCcccccchhHH
Confidence            97442222            8999999999987766654

>KOG0032|consensus

Probab=99.96  E-value=3.4e-28  Score=203.49  Aligned_cols=169  Identities=19%  Similarity=0.227  Sum_probs=143.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..||..+|+|++......+ ......+.+|+.+|+.+. |||||.++++|.+..    .+++|||++.||.|.+.+...
T Consensus        56 ~~~tg~~~A~K~i~k~~~~~-~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~----~~~lvmEL~~GGeLfd~i~~~  130 (382)
T KOG0032|consen   56 EKSTGKEVACKVIPKRKLRG-KEDREDVRREVAILQQLSGHPNIVQLKDAFEDPD----SVYLVMELCEGGELFDRIVKK  130 (382)
T ss_pred             ecCCCceeEEEEeehhhccc-cccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCC----eEEEEEEecCCchHHHHHHHc
Confidence            46789999999998543322 224568899999999997 999999999998866    599999999999999999876


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC----CcEEEeecCcccc-------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN----GLVKIGCDTYTHT-------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~----~~~ki~dfg~~~~-------~~~~~t~~  149 (218)
                           .+++..+..++.|++.|+.|||+  .||+||||||+|+|+...    +.++++|||++..       ...+||+.
T Consensus       131 -----~~sE~da~~~~~~il~av~~lH~--~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~  203 (382)
T KOG0032|consen  131 -----HYSERDAAGIIRQILEAVKYLHS--LGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPE  203 (382)
T ss_pred             -----cCCHHHHHHHHHHHHHHHHHHHh--CCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCcc
Confidence                 29999999999999999999999  669999999999999643    5799999999876       56799999


Q ss_pred             ccccccCC--CCch----------hhhhhhCCCCCCcchhhhhHH
Q psy238          150 ATRQTYGR--PISG----------QYEIVTKTNNVTEKKKEKEEE  182 (218)
Q Consensus       150 y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~ee~~~  182 (218)
                      |+|||+..  +++.          .|.|++|..||.+..+.+.-.
T Consensus       204 y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~  248 (382)
T KOG0032|consen  204 YVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL  248 (382)
T ss_pred             ccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH
Confidence            99999843  4433          688999999999887665443

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.96  E-value=2.9e-28  Score=201.84  Aligned_cols=166  Identities=19%  Similarity=0.219  Sum_probs=134.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||.+...  .........+.+|+.+++.++||||+++++++..... ....+|+||||+. ++|.+++...
T Consensus        21 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~   97 (338)
T cd07859          21 DTHTGEKVAIKKINDV--FEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SDLHQVIKAN   97 (338)
T ss_pred             ECCCCCEEEEEEechh--hccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEecCC-CCHHHHHHhc
Confidence            5678999999998732  1112344568899999999999999999998865432 2246899999995 7999988754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~  149 (218)
                      .    .+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..           ....+|..
T Consensus        98 ~----~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~  171 (338)
T cd07859          98 D----DLTPEHHQFFLYQLLRALKYIHT--ANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRW  171 (338)
T ss_pred             c----cCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCC
Confidence            3    48999999999999999999999  7799999999999999999999999999864           12468899


Q ss_pred             ccccccCC----CCch----------hhhhhhCCCCCCcch
Q psy238          150 ATRQTYGR----PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       150 y~aPE~~~----~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+|||+..    .++.          +|+|++|..||.+..
T Consensus       172 y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~  212 (338)
T cd07859         172 YRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKN  212 (338)
T ss_pred             cCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999732    2222          689999999997654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.96  E-value=5.9e-28  Score=200.30  Aligned_cols=166  Identities=16%  Similarity=0.204  Sum_probs=131.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .++..||||++...   ........+.+|+.++..+ +||||+++++++....   ..+++||||+++|+|.+++.....
T Consensus        35 ~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~---~~~~lv~ey~~~g~L~~~l~~~~~  108 (338)
T cd05102          35 SSCNTVAVKMLKEG---ATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN---GPLMVIVEFCKYGNLSNFLRAKRE  108 (338)
T ss_pred             ccchhhheeccccc---cchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC---CceEEEEecCCCCcHHHHHHhcch
Confidence            45678999998732   2233456789999999999 8999999999886543   358999999999999999976421


Q ss_pred             c----------------------------------------------------------CCCCCHHHHHHHHHHHHHHHH
Q psy238           83 N----------------------------------------------------------VKKLPLSAWKRWCSQILSALS  104 (218)
Q Consensus        83 ~----------------------------------------------------------~~~~~~~~~~~~~~qi~~~l~  104 (218)
                      .                                                          ..++++..+..++.||+.||.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~  188 (338)
T cd05102         109 FFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGME  188 (338)
T ss_pred             hcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHH
Confidence            1                                                          124778889999999999999


Q ss_pred             HhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccccccC--CCCch----------h
Q psy238          105 YLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTYG--RPISG----------Q  162 (218)
Q Consensus       105 ~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~~--~~~~~----------~  162 (218)
                      |||+  .+|+||||||+|||++.++.++|+|||++..          ....++..|+|||+.  ..++.          +
T Consensus       189 ~LH~--~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il  266 (338)
T cd05102         189 FLAS--RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLL  266 (338)
T ss_pred             HHHH--CCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHH
Confidence            9999  7799999999999999999999999998864          123445789999962  22222          6


Q ss_pred             hhhhh-CCCCCCcchh
Q psy238          163 YEIVT-KTNNVTEKKK  177 (218)
Q Consensus       163 ~ei~t-g~~p~~~~~~  177 (218)
                      |+|++ |..||.+...
T Consensus       267 ~el~~~g~~pf~~~~~  282 (338)
T cd05102         267 WEIFSLGASPYPGVQI  282 (338)
T ss_pred             HHHHhCCCCCCCCCCc
Confidence            88987 9999976543

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=4.2e-28  Score=200.61  Aligned_cols=163  Identities=18%  Similarity=0.228  Sum_probs=134.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|++..... ........+..|+.++..+ +||+|+.+++++....    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~   90 (327)
T cd05617          16 LKKNDQIYAMKVVKKELV-HDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTS----RLFLVIEYVNGGDLMFHMQRQ   90 (327)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCC----EEEEEEeCCCCCcHHHHHHHc
Confidence            346788999999984321 1133456678899998888 6999999999987644    699999999999999988754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ----~~l~~~~~~~~~~qi~~al~~lH~--~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a  164 (327)
T cd05617          91 ----RKLPEEHARFYAAEICIALNFLHE--RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIA  164 (327)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCC
Confidence                349999999999999999999999  7799999999999999999999999998763        34568999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcc
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ||+  +..++.          +|+|++|..||...
T Consensus       165 PE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~  199 (327)
T cd05617         165 PEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDII  199 (327)
T ss_pred             HHHHCCCCCCchheeehhHHHHHHHHhCCCCCCcc
Confidence            997  222222          79999999999654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=9.7e-28  Score=194.66  Aligned_cols=167  Identities=13%  Similarity=0.132  Sum_probs=135.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+...... .......+.+|+.++..++||||+.+++++....    .+|+||||+++++|.+++....
T Consensus        21 ~~~~~~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~   95 (285)
T cd05605          21 VRATGKMYACKKLEKKRIK-KRKGEAMALNEKQILEKVNSRFVVSLAYAYETKD----ALCLVLTLMNGGDLKFHIYNMG   95 (285)
T ss_pred             EcCCCceEEEEEEehhhhh-hhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCC----eEEEEEeccCCCcHHHHHHhcC
Confidence            4567899999999743211 1223456778999999999999999999886643    5999999999999999887543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      .  ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..       ....|+..|+|||
T Consensus        96 ~--~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE  171 (285)
T cd05605          96 N--PGFDEERAVFYAAEITCGLEDLHR--ERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPE  171 (285)
T ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHH--CCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCccccccCCCCccCcH
Confidence            2  458999999999999999999999  7799999999999999999999999998865       2346789999999


Q ss_pred             cCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          155 YGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +..  .++.          +|++++|..||.+...
T Consensus       172 ~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~  206 (285)
T cd05605         172 VVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKE  206 (285)
T ss_pred             HhcCCCCCccccchhHHHHHHHHHHCCCCCCCCch
Confidence            732  1111          7999999999987544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.96  E-value=5.9e-28  Score=199.44  Aligned_cols=165  Identities=15%  Similarity=0.198  Sum_probs=131.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHh---hcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENL---TQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l---~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|..||||++...... .......+..|+.++   ..++||||+++++++....    .+|+||||+++++|..++.
T Consensus        20 ~~~~~~~~aiK~~~~~~~~-~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~----~~~lv~E~~~~~~L~~~~~   94 (324)
T cd05589          20 YKKTGELYAIKALKKGDII-ARDEVESLMCEKRIFETANSERHPFLVNLFACFQTED----HVCFVMEYAAGGDLMMHIH   94 (324)
T ss_pred             ECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCC----EEEEEEcCCCCCcHHHHhh
Confidence            3568899999999743211 122345566666554   5678999999999987644    6999999999999998875


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                      .     ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....|++.|
T Consensus        95 ~-----~~l~~~~~~~~~~qi~~al~~lH~--~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y  167 (324)
T cd05589          95 T-----DVFSEPRAVFYAACVVLGLQYLHE--NKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEF  167 (324)
T ss_pred             c-----CCCCHHHHHHHHHHHHHHHHHHHh--CCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccc
Confidence            4     348999999999999999999999  7799999999999999999999999998764        235689999


Q ss_pred             cccccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          151 TRQTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       151 ~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +|||+.  ..++.          +|+|++|..||.+...+
T Consensus       168 ~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~  207 (324)
T cd05589         168 LAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEE  207 (324)
T ss_pred             cCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHH
Confidence            999962  22221          79999999999876543

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0607|consensus

Probab=99.96  E-value=5.6e-29  Score=197.13  Aligned_cols=161  Identities=19%  Similarity=0.229  Sum_probs=138.3

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ++..||.+||||++.    ........++.+|++++... .|+||++|++||.+..    ++|+|||-|.||+|...|..
T Consensus        98 v~i~t~~EYAVKiid----Kq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~----~FYLVfEKm~GGplLshI~~  169 (463)
T KOG0607|consen   98 VSIQTGKEYAVKIID----KQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDT----RFYLVFEKMRGGPLLSHIQK  169 (463)
T ss_pred             eeeccchhhhhhhhh----cCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccc----eEEEEEecccCchHHHHHHH
Confidence            356899999999998    33456778999999999888 6999999999998865    69999999999999999998


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC---CcEEEeecCcccc---------------
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN---GLVKIGCDTYTHT---------------  141 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~---~~~ki~dfg~~~~---------------  141 (218)
                      +..    |++..+..++..|+.||.|||.  +||.||||||+|||..+.   .-+|||||.++..               
T Consensus       170 ~~~----F~E~EAs~vvkdia~aLdFlH~--kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L  243 (463)
T KOG0607|consen  170 RKH----FNEREASRVVKDIASALDFLHT--KGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPEL  243 (463)
T ss_pred             hhh----ccHHHHHHHHHHHHHHHHHHhh--cCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccc
Confidence            754    9999999999999999999999  779999999999999654   4689999997654               


Q ss_pred             ccCCCcccccccccCCCCch-----------------hhhhhhCCCCCCcc
Q psy238          142 IENKKYLSATRQTYGRPISG-----------------QYEIVTKTNNVTEK  175 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~~~~~~-----------------~~ei~tg~~p~~~~  175 (218)
                      .+.+|+..|||||+-..+..                 +|=|++|-.||.+.
T Consensus       244 ~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~  294 (463)
T KOG0607|consen  244 LTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGH  294 (463)
T ss_pred             cCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCc
Confidence            56789999999997332222                 78999999999744

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.96  E-value=5.6e-28  Score=199.91  Aligned_cols=168  Identities=13%  Similarity=0.151  Sum_probs=137.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+..|+.++..++||||+.+++++.+..    .+|+||||+++++|.+++....
T Consensus        22 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~   96 (330)
T cd05601          22 EKATGDIYAMKVMKKSVL-LAQETVSFFEEERDILSISNSPWIPQLQYAFQDKD----NLYLVMEYQPGGDLLSLLNRYE   96 (330)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCC----eEEEEECCCCCCCHHHHHHHhc
Confidence            456899999999985321 12334567788999999999999999999887643    5899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         ..+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....+|+.|+|
T Consensus        97 ---~~l~~~~~~~~~~qi~~aL~~lH~--~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~a  171 (330)
T cd05601          97 ---DQFDEDMAQFYLAELVLAIHSVHQ--MGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIA  171 (330)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeEcccCchHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccC
Confidence               358999999999999999999999  7799999999999999999999999998864         12468999999


Q ss_pred             cccCC--------CCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYGR--------PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~~--------~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+..        .++.          +|+|++|..||......+
T Consensus       172 PE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~  216 (330)
T cd05601         172 PEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAK  216 (330)
T ss_pred             HHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHH
Confidence            99732        1111          799999999997665433

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.96  E-value=1.6e-27  Score=197.50  Aligned_cols=165  Identities=18%  Similarity=0.197  Sum_probs=137.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++...   ........+.+|+.+|..++||||+++++++...+    .+++||||+++++|.+++....
T Consensus        26 ~~~~~~~~a~k~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~   98 (331)
T cd06649          26 HKPSGLIMARKLIHLE---IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG----EISICMEHMDGGSLDQVLKEAK   98 (331)
T ss_pred             ECCCCcEEEEEEeecc---cCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC----EEEEEeecCCCCcHHHHHHHcC
Confidence            3567899999999753   22445678899999999999999999999987644    6899999999999999997653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                          .+++..+..++.|++.||.|||+. .+|+|+||+|+|||++.++.++|+|||++..      ....+++.|+|||+
T Consensus        99 ----~~~~~~~~~~~~~i~~~l~~lH~~-~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~  173 (331)
T cd06649          99 ----RIPEEILGKVSIAVLRGLAYLREK-HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER  173 (331)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHhhc-CCEEcCCCChhhEEEcCCCcEEEccCcccccccccccccCCCCcCcCCHhH
Confidence                489999999999999999999982 2499999999999999999999999998864      34568999999997


Q ss_pred             C--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          156 G--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .  ..++.          +|++++|+.||......
T Consensus       174 ~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~  208 (331)
T cd06649         174 LQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAK  208 (331)
T ss_pred             hcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            3  22322          79999999999765443

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.96  E-value=4.6e-28  Score=196.82  Aligned_cols=164  Identities=20%  Similarity=0.251  Sum_probs=133.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++.....   ......+.+|+.+++.++||||+++++++....    .+++||||++ ++|.+++....
T Consensus        26 ~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~-~~l~~~l~~~~   97 (288)
T cd07871          26 SKLTENLVALKEIRLEHE---EGAPCTAIREVSLLKNLKHANIVTLHDIIHTER----CLTLVFEYLD-SDLKQYLDNCG   97 (288)
T ss_pred             ECCCCCEEEEEEeccccc---CCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCC----eEEEEEeCCC-cCHHHHHHhcC
Confidence            356789999999975321   223346778999999999999999999987643    5899999997 59999887543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..++...+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+++.|+||
T Consensus        98 ---~~~~~~~~~~~~~qi~~aL~~LH~--~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aP  172 (288)
T cd07871          98 ---NLMSMHNVKIFMFQLLRGLSYCHK--RKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPP  172 (288)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCccccCceecccccCh
Confidence               347899999999999999999999  7799999999999999999999999998864        235678999999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+..   .++.          +|+|++|..||.+....
T Consensus       173 E~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~  210 (288)
T cd07871         173 DVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVK  210 (288)
T ss_pred             HHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            9632   2222          79999999999765543

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.96  E-value=9.9e-28  Score=198.07  Aligned_cols=166  Identities=16%  Similarity=0.168  Sum_probs=133.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC-CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH-PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h-p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++..... ........+..|+.++..+.| ++|+.+++++...+    .+|+||||+++++|.+++...
T Consensus        21 ~~~~~~~~avK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~----~~~lv~E~~~~g~L~~~~~~~   95 (324)
T cd05587          21 RKGTDELYAIKILKKDVI-IQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD----RLYFVMEYVNGGDLMYHIQQV   95 (324)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCC----EEEEEEcCCCCCcHHHHHHHc
Confidence            356788999999974321 112344567888999999866 45888888886643    599999999999999998764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        96 ----~~~~~~~~~~~~~qi~~al~~lH~--~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~a  169 (324)
T cd05587          96 ----GKFKEPHAVFYAAEIAIGLFFLHS--KGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIA  169 (324)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccC
Confidence                348999999999999999999999  7799999999999999999999999998753        23568999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+.  .+++.          +++|++|..||.+....
T Consensus       170 PE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~  207 (324)
T cd05587         170 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED  207 (324)
T ss_pred             hhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence            9972  22222          79999999999866543

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.96  E-value=7.5e-28  Score=198.82  Aligned_cols=166  Identities=15%  Similarity=0.173  Sum_probs=133.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|++...... .......+..|+.++..+. |++|+.+++++...+    .+|+||||+++++|.+++...
T Consensus        21 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~----~~~lv~Ey~~~g~L~~~i~~~   95 (323)
T cd05615          21 RKGTDELYAIKILKKDVVI-QDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVD----RLYFVMEYVNGGDLMYHIQQV   95 (323)
T ss_pred             ECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhccCCCchhheeeEEecCC----EEEEEEcCCCCCcHHHHHHHc
Confidence            4568999999999743111 1233456777888888885 577888988886644    589999999999999998764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        96 ----~~l~~~~~~~i~~qi~~al~~lH~--~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~a  169 (323)
T cd05615          96 ----GKFKEPQAVFYAAEISVGLFFLHR--RGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIA  169 (323)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHHHeEECCCCCEEEeccccccccCCCCccccCccCCccccC
Confidence                349999999999999999999999  7799999999999999999999999998764        23458999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+.  .+++.          ++++++|..||.+....
T Consensus       170 PE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~  207 (323)
T cd05615         170 PEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDED  207 (323)
T ss_pred             HHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence            9972  22222          79999999999876543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=9.5e-28  Score=197.64  Aligned_cols=165  Identities=15%  Similarity=0.167  Sum_probs=133.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...... .......+..|..++... +||+|+++++++...+    ++|+||||+++++|..++...
T Consensus        16 ~~~~~~~~avK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~----~~~lv~E~~~~g~L~~~i~~~   90 (316)
T cd05620          16 LKGKGEYFAVKALKKDVVL-IDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKE----HLFFVMEFLNGGDLMFHIQDK   90 (316)
T ss_pred             ECCCCCEEEEEEEEHHHhh-hcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCC----EEEEEECCCCCCcHHHHHHHc
Confidence            4568899999999743111 122344566777777654 8999999999987643    699999999999999998764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..+..++.|++.||.|||+  ++|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ----~~~~~~~~~~~~~qi~~~l~~lH~--~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a  164 (316)
T cd05620          91 ----GRFDLYRATFYAAEIVCGLQFLHS--KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIA  164 (316)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccC
Confidence                348999999999999999999999  7799999999999999999999999998763        34568999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+.  ..++.          +|+|++|..||.....
T Consensus       165 PE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~  201 (316)
T cd05620         165 PEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE  201 (316)
T ss_pred             HHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH
Confidence            9972  22222          7999999999976544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0033|consensus

Probab=99.96  E-value=4.8e-29  Score=191.19  Aligned_cols=169  Identities=16%  Similarity=0.202  Sum_probs=139.1

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |+..||+.+|+|++......  ....+.+.+|+.|.+.++||||++|++.+...    +..|||||++.|++|..=|-.+
T Consensus        31 ~~~~tg~~fa~kiin~~k~~--~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~----~~~ylvFe~m~G~dl~~eIV~R  104 (355)
T KOG0033|consen   31 VHKTTGLEFAAKIINTKKLS--ARDFQKLEREARICRKLQHPNIVRLHDSIQEE----SFHYLVFDLVTGGELFEDIVAR  104 (355)
T ss_pred             HhccchHHHHHHHhhhhhhc--cccHHHHHHHHHHHHhcCCCcEeehhhhhccc----ceeEEEEecccchHHHHHHHHH
Confidence            46789999999999865333  33667899999999999999999998877553    4689999999999998877665


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---CCcEEEeecCcccc-------ccCCCcccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---NGLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                          ..+++..+-.+++||+.+|.|+|+  ++|||||++|+|+|+.+   ..-+||+|||++..       .+..||++|
T Consensus       105 ----~~ySEa~aSH~~rQiLeal~yCH~--n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~f  178 (355)
T KOG0033|consen  105 ----EFYSEADASHCIQQILEALAYCHS--NGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGY  178 (355)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHh--cCceeccCChhheeeeeccCCCceeecccceEEEeCCccccccccCCCcc
Confidence                338899999999999999999999  88999999999999953   36799999998865       567899999


Q ss_pred             ccccc------CCCCch------hhhhhhCCCCCCcchhhhhH
Q psy238          151 TRQTY------GRPISG------QYEIVTKTNNVTEKKKEKEE  181 (218)
Q Consensus       151 ~aPE~------~~~~~~------~~ei~tg~~p~~~~~~ee~~  181 (218)
                      ||||+      +.+.+.      +|-++.|..||++...+..-
T Consensus       179 maPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rly  221 (355)
T KOG0033|consen  179 LSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLY  221 (355)
T ss_pred             cCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHH
Confidence            99997      222222      78889999999985554443

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.8e-28  Score=201.60  Aligned_cols=166  Identities=19%  Similarity=0.244  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+..|+.++..++||||+++++++.+..    ++|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   95 (350)
T cd05573          22 DKDTGQVYAMKVLRKSDMI-KRNQIAHVRAERDILADADSPWIVKLYYSFQDEE----HLYLVMEYMPGGDLMNLLIRK-   95 (350)
T ss_pred             ECCCCCEEEEEEEEHHHHh-hccHHHHHHHHHHHHHhcCCCCccchhhheecCC----eEEEEEcCCCCCCHHHHHHHc-
Confidence            3467999999999843211 1234567888999999999999999999887643    699999999999999999865 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------------------  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------------------  141 (218)
                         ..+++..++.++.||+.||.|||+  .||+||||+|+|||++.++.++|+|||++..                    
T Consensus        96 ---~~l~~~~~~~i~~qi~~aL~~LH~--~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~  170 (350)
T cd05573          96 ---DVFPEETARFYIAELVLALDSVHK--LGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFR  170 (350)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccccccccccccc
Confidence               348999999999999999999999  7799999999999999999999999998764                    


Q ss_pred             -----------------ccCCCcccccccccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          142 -----------------IENKKYLSATRQTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       142 -----------------~~~~~t~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                                       ....||+.|+|||+.  ..++.          +|+|++|..||......
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~  236 (350)
T cd05573         171 DNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQ  236 (350)
T ss_pred             ccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHH
Confidence                             124589999999962  22222          79999999999876543

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.95  E-value=1e-27  Score=196.00  Aligned_cols=163  Identities=20%  Similarity=0.228  Sum_probs=132.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++.....   ......+.+|+.+++.++||||+.+++++.+..    .+|+||||+. ++|.+++....
T Consensus        26 ~~~~~~~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~   97 (303)
T cd07869          26 SKVNGKLVALKVIRLQEE---EGTPFTAIREASLLKGLKHANIVLLHDIIHTKE----TLTLVFEYVH-TDLCQYMDKHP   97 (303)
T ss_pred             ECCCCCEEEEEEeccccc---cccchhHHHHHHHHhhCCCCCcCeEEEEEecCC----eEEEEEECCC-cCHHHHHHhCC
Confidence            356889999999975321   222345678999999999999999999987643    6899999995 78888887543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..++...+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+++.|+||
T Consensus        98 ---~~~~~~~~~~~~~qi~~al~~lH~--~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  172 (303)
T cd07869          98 ---GGLHPENVKLFLFQLLRGLSYIHQ--RYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPP  172 (303)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCCh
Confidence               348899999999999999999999  7799999999999999999999999998754        235678999999


Q ss_pred             ccC--C-CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYG--R-PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~--~-~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+.  . .++.          +++|++|..||.+...
T Consensus       173 E~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~  209 (303)
T cd07869         173 DVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKD  209 (303)
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCcc
Confidence            962  2 2222          7899999999986543

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG4721|consensus

Probab=99.95  E-value=8.7e-29  Score=208.40  Aligned_cols=149  Identities=23%  Similarity=0.337  Sum_probs=128.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .+++||||.+.-           .-..+|.-|+.|.||||+.+.|+|....    -+|||||||+.|.|..+|....   
T Consensus       146 ~netVAVKKV~e-----------lkETdIKHLRkLkH~NII~FkGVCtqsP----cyCIiMEfCa~GqL~~VLka~~---  207 (904)
T KOG4721|consen  146 HNETVAVKKVRE-----------LKETDIKHLRKLKHPNIITFKGVCTQSP----CYCIIMEFCAQGQLYEVLKAGR---  207 (904)
T ss_pred             cCceehhHHHhh-----------hhhhhHHHHHhccCcceeeEeeeecCCc----eeEEeeeccccccHHHHHhccC---
Confidence            467899997752           1123577799999999999999998754    5899999999999999999764   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccccc--
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQTY--  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE~--  155 (218)
                       .+.......|..+|+.|+.|||.  +.|||||||.-||||..+..+||+|||.+..       ..+.||..|||||+  
T Consensus       208 -~itp~llv~Wsk~IA~GM~YLH~--hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIr  284 (904)
T KOG4721|consen  208 -PITPSLLVDWSKGIAGGMNYLHL--HKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIR  284 (904)
T ss_pred             -ccCHHHHHHHHHHhhhhhHHHHH--hhHhhhccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhh
Confidence             48899999999999999999999  7799999999999999999999999998765       67899999999998  


Q ss_pred             CCCCch----------hhhhhhCCCCCCc
Q psy238          156 GRPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       156 ~~~~~~----------~~ei~tg~~p~~~  174 (218)
                      ..|++.          ++||+||..||..
T Consensus       285 nePcsEKVDIwSfGVVLWEmLT~EiPYkd  313 (904)
T KOG4721|consen  285 NEPCSEKVDIWSFGVVLWEMLTGEIPYKD  313 (904)
T ss_pred             cCCcccccceehhHHHHHHHHhcCCCccc
Confidence            334443          8999999999963

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.95  E-value=1.5e-27  Score=196.51  Aligned_cols=166  Identities=16%  Similarity=0.202  Sum_probs=133.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhc-CCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQ-LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~-l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...... ..........|..++.. ++||||+++++++.+..    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~   90 (316)
T cd05619          16 LKGTNQFFAIKALKKDVVL-MDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKE----NLFFVMEYLNGGDLMFHIQSC   90 (316)
T ss_pred             ECCCCCEEEEEEEEHHHhh-hcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCC----EEEEEEeCCCCCcHHHHHHHc
Confidence            4567899999999843111 12233456667777775 48999999999987654    589999999999999999764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        91 ----~~~~~~~~~~~~~qi~~al~~LH~--~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a  164 (316)
T cd05619          91 ----HKFDLPRATFYAAEIICGLQFLHS--KGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIA  164 (316)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHh--CCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccC
Confidence                348999999999999999999999  7799999999999999999999999998764        23468999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+.  ..++.          +|++++|..||.....+
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~  202 (316)
T cd05619         165 PEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEE  202 (316)
T ss_pred             HHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHH
Confidence            9972  22222          79999999999876543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.2e-27  Score=198.14  Aligned_cols=166  Identities=13%  Similarity=0.163  Sum_probs=135.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+..|+.++..++||||+.+++++.+.+    ++|+||||+++++|.+++....
T Consensus        22 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~g~~L~~~l~~~~   96 (331)
T cd05597          22 MKNTGQVYAMKILNKWEM-LKRAETACFREERDVLVNGDRRWITNLHYAFQDEN----NLYLVMDYYVGGDLLTLLSKFE   96 (331)
T ss_pred             ECCCCCEEEEEEEEHHHH-hhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCC----eEEEEEecCCCCcHHHHHHHhc
Confidence            356789999999974211 11334556788999999999999999999987644    6999999999999999997642


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         ..+++..+..++.||+.||.|||+  ++|+||||+|+|||++.++.++|+|||++..         ....||+.|+|
T Consensus        97 ---~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~a  171 (331)
T cd05597          97 ---DRLPEDMARFYLAEMVLAIDSVHQ--LGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYIS  171 (331)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccC
Confidence               348999999999999999999999  7799999999999999999999999998754         12358999999


Q ss_pred             cccCC-------CCc----------hhhhhhhCCCCCCcchh
Q psy238          153 QTYGR-------PIS----------GQYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~-------~~~----------~~~ei~tg~~p~~~~~~  177 (218)
                      ||+..       .++          .+|+|++|..||.....
T Consensus       172 PE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~  213 (331)
T cd05597         172 PEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL  213 (331)
T ss_pred             HHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCH
Confidence            99732       111          17999999999976543

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.95  E-value=1.6e-27  Score=207.17  Aligned_cols=172  Identities=20%  Similarity=0.243  Sum_probs=139.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC----CCCeEEEEEeccCCCCHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN----DKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~----~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +..+|..||||++.....  .......+.+|+.++..+.|+||+.++..+.....    ....+++||||+++|+|.+++
T Consensus        53 ~~~~g~~vAvK~i~~~~~--~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l  130 (496)
T PTZ00283         53 RVSDGEPFAVKVVDMEGM--SEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEI  130 (496)
T ss_pred             EcCCCCEEEEEEEecccC--CHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHH
Confidence            456899999999975422  24455678899999999999999999887754322    112478999999999999999


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCc
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKY  147 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t  147 (218)
                      .........+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....||
T Consensus       131 ~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~--~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt  208 (496)
T PTZ00283        131 KSRAKTNRTFREHEAGLLFIQVLLAVHHVHS--KHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGT  208 (496)
T ss_pred             HHhhccCCCCCHHHHHHHHHHHHHHHHHHHh--CCEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCC
Confidence            8765445679999999999999999999999  7799999999999999999999999998754          235689


Q ss_pred             ccccccccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          148 LSATRQTYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       148 ~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +.|+|||+..  .++.          +|++++|..||.....
T Consensus       209 ~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~  250 (496)
T PTZ00283        209 PYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENM  250 (496)
T ss_pred             cceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            9999999733  3332          7999999999976543

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.95  E-value=2.7e-27  Score=191.29  Aligned_cols=167  Identities=16%  Similarity=0.206  Sum_probs=134.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+....... ......+..|+.++..++||||+++++++....    ++|+||||++|++|.+++....
T Consensus        14 ~~~~~~~~a~K~~~~~~~~~-~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~----~~~lv~e~~~g~~L~~~~~~~~   88 (277)
T cd05607          14 VKNTGKMYACKKLDKKRLKK-KSGEKMALLEKEILEKVNSPFIVNLAYAFESKT----HLCLVMSLMNGGDLKYHIYNVG   88 (277)
T ss_pred             EccCCcEEEEEEEcHHHhhc-chhhHHHHHHHHHHHhcCCCcEEEEEEEEecCC----eEEEEEecCCCCCHHHHHHhcc
Confidence            35679999999987432111 223345567999999999999999999887643    6899999999999999886543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      .  ..+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....++..|+|||
T Consensus        89 ~--~~~~~~~~~~~~~qi~~al~~lH~--~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE  164 (277)
T cd05607          89 E--RGLEMERVIHYSAQITCGILHLHS--MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPE  164 (277)
T ss_pred             c--cCCCHHHHHHHHHHHHHHHHHHHH--CCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCccCHH
Confidence            2  348899999999999999999999  7799999999999999999999999998764       2356889999999


Q ss_pred             cC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          155 YG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +.  ..++.          +|++++|..||.....
T Consensus       165 ~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~  199 (277)
T cd05607         165 ILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKE  199 (277)
T ss_pred             HHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcc
Confidence            72  22222          7999999999976543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.95  E-value=1.7e-27  Score=196.61  Aligned_cols=167  Identities=15%  Similarity=0.168  Sum_probs=133.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++..... ........+..|..++..+ +||+|+.+++++...+    .+|+||||+++++|.+++...
T Consensus        21 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~----~~~lv~E~~~~g~L~~~~~~~   95 (323)
T cd05616          21 RKGTDELYAIKILKKDVV-IQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMD----RLYFVMEYVNGGDLMYQIQQV   95 (323)
T ss_pred             ECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCC----EEEEEEcCCCCCCHHHHHHHc
Confidence            456788999999974321 1122344566777887777 6899999999887644    689999999999999998765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        96 ~----~~~~~~~~~~~~qi~~aL~~LH~--~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a  169 (323)
T cd05616          96 G----RFKEPHAVFYAAEIAIGLFFLHS--KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIA  169 (323)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcC
Confidence            3    48999999999999999999999  7799999999999999999999999998764        24568999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+.  .+++.          +|++++|..||.+....+
T Consensus       170 PE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~  208 (323)
T cd05616         170 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE  208 (323)
T ss_pred             HHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHH
Confidence            9962  22222          799999999998765443

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.95  E-value=1.4e-27  Score=193.47  Aligned_cols=164  Identities=16%  Similarity=0.222  Sum_probs=132.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....  ........+.+|+.++..++||||+++++++...+    .+|+||||++++++..+.... 
T Consensus        22 ~~~~~~~~avK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~-   94 (287)
T cd07848          22 HKETKEIVAIKKFKDSE--ENEEVKETTLRELKMLRTLKQENIVELKEAFRRRG----KLYLVFEYVEKNMLELLEEMP-   94 (287)
T ss_pred             ECCCCcEEEEEEEeccc--ccccchhhHHHHHHHHHhCCCccccchhhhEecCC----EEEEEEecCCCCHHHHHHhcC-
Confidence            45678999999997542  22344567788999999999999999999986643    689999999876665444322 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....+++.|+|
T Consensus        95 ---~~~~~~~~~~~~~qi~~~L~~lH~--~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a  169 (287)
T cd07848          95 ---NGVPPEKVRSYIYQLIKAIHWCHK--NDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRS  169 (287)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccccccccccCC
Confidence               348999999999999999999999  7799999999999999999999999998864         12467899999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+.  ..++.          +|++++|+.||.....
T Consensus       170 PE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~  206 (287)
T cd07848         170 PELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESE  206 (287)
T ss_pred             cHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCH
Confidence            9962  22222          7999999999987554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.95  E-value=1.6e-27  Score=196.39  Aligned_cols=166  Identities=16%  Similarity=0.214  Sum_probs=134.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...... .......+..|+.++..+ +||||+++++++....    .+|+||||+++++|..++...
T Consensus        16 ~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~   90 (318)
T cd05570          16 LKGTDELYAVKVLKKDVIL-QDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKD----RLFFVMEYVNGGDLMFHIQRS   90 (318)
T ss_pred             ECCCCCEEEEEEEEHHHHh-hhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC----EEEEEEcCCCCCCHHHHHHHc
Confidence            3567889999999843211 123445667888888877 7999999999987644    699999999999999988765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+++.|+|
T Consensus        91 ~----~l~~~~~~~~~~qi~~~l~~LH~--~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~a  164 (318)
T cd05570          91 G----RFDEPRARFYAAEIVLGLQFLHE--RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIA  164 (318)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHh--CCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccC
Confidence            3    49999999999999999999999  7799999999999999999999999998753        23468999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+.  ..++.          ++++++|..||.....+
T Consensus       165 PE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~  202 (318)
T cd05570         165 PEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDED  202 (318)
T ss_pred             HHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHH
Confidence            9972  22222          78999999999765543

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0589|consensus

Probab=99.95  E-value=5.9e-28  Score=200.95  Aligned_cols=168  Identities=22%  Similarity=0.347  Sum_probs=144.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ++.++..||+|.+....  .+......+++|+.+++++.|||||.+.+.|...+   ..+|+||+||+||+|.+.|....
T Consensus        25 hk~~~~~~vlK~I~l~~--~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~---~~l~Ivm~Y~eGg~l~~~i~~~k   99 (426)
T KOG0589|consen   25 HKSDDKLYVLKKINLEK--LTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDG---QLLCIVMEYCEGGDLAQLIKEQK   99 (426)
T ss_pred             hccCCceEEEEEEeccc--cCchhhHHHHHHHHHHHhccCCCeeeeccchhcCC---ceEEEEEeecCCCCHHHHHHHHh
Confidence            45677899999998763  33455568899999999999999999999998755   35899999999999999999886


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      +  ..|++..++.|+.|++.|+.|||+  .+|+|||||+.||++..++.++|.|||++..        .+..||+.|++|
T Consensus       100 ~--~~f~E~~i~~~~~Q~~~av~ylH~--~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcP  175 (426)
T KOG0589|consen  100 G--VLFPEERILKWFVQILLAVNYLHE--NRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCP  175 (426)
T ss_pred             h--ccccHHHHHHHHHHHHHHHHHHHh--hhhhcccchhhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCH
Confidence            4  569999999999999999999999  7899999999999999999999999999876        557899999999


Q ss_pred             ccCC--CC----------chhhhhhhCCCCCCcchhh
Q psy238          154 TYGR--PI----------SGQYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~~--~~----------~~~~ei~tg~~p~~~~~~e  178 (218)
                      |+..  ++          +.+|||.+-+.+|.+..-.
T Consensus       176 Eil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~  212 (426)
T KOG0589|consen  176 EILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMS  212 (426)
T ss_pred             HHhCCCCCCccCcchhhcchHHHHHhcccccCccchH
Confidence            9733  22          2279999999999866543

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.95  E-value=2.2e-27  Score=196.64  Aligned_cols=166  Identities=12%  Similarity=0.136  Sum_probs=135.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++..... ........+..|+.++..+.|++|+.+++++.+.+    .+|+||||++||+|.+++....
T Consensus        22 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~----~~~lv~Ey~~gg~L~~~l~~~~   96 (331)
T cd05624          22 MKHTERIYAMKILNKWEM-LKRAETACFREERNVLVNGDCQWITTLHYAFQDEN----YLYLVMDYYVGGDLLTLLSKFE   96 (331)
T ss_pred             ECCCCCEEEEEEEeHHHH-HhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC----EEEEEEeCCCCCcHHHHHHHhc
Confidence            356788999999874211 11234456788999999999999999999987644    6899999999999999998642


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         ..+++..+..++.|++.||.|||+  ++|+||||+|+|||++.++.++|+|||++..         ....||+.|+|
T Consensus        97 ---~~l~~~~~~~~~~qi~~~L~~lH~--~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~a  171 (331)
T cd05624          97 ---DRLPEDMARFYIAEMVLAIHSIHQ--LHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYIS  171 (331)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCC
Confidence               348999999999999999999999  7799999999999999999999999998754         22468999999


Q ss_pred             cccCC-------CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR-------PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~-------~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+..       .++.          +|+|++|..||.....
T Consensus       172 PE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~  213 (331)
T cd05624         172 PEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESL  213 (331)
T ss_pred             HHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCH
Confidence            99632       1111          7999999999976543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.95  E-value=5.9e-27  Score=194.29  Aligned_cols=164  Identities=17%  Similarity=0.193  Sum_probs=136.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++...   ........+.+|+.++..++||||++++++|.+.+    .+|+||||+++++|.+++... 
T Consensus        26 ~~~~~~~~a~k~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   97 (333)
T cd06650          26 HKPSGLIMARKLIHLE---IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG----EISICMEHMDGGSLDQVLKKA-   97 (333)
T ss_pred             ECCCCcEEEEEEeecc---cCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECC----EEEEEEecCCCCcHHHHHHHc-
Confidence            3457889999988753   22345567899999999999999999999998754    699999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                         ..+++..+..++.|++.||.|||+. .+|+|+||+|+|||++.++.++|+|||++..      ....++..|+|||+
T Consensus        98 ---~~~~~~~~~~~~~~l~~~l~~lH~~-~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~  173 (333)
T cd06650          98 ---GRIPEQILGKVSIAVIKGLTYLREK-HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER  173 (333)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHhc-CCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccccCCCCccccCHHH
Confidence               3488999999999999999999972 2599999999999999999999999998864      34568999999997


Q ss_pred             CC--CCch----------hhhhhhCCCCCCcchh
Q psy238          156 GR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       156 ~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ..  .++.          +|++++|+.||.....
T Consensus       174 ~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~  207 (333)
T cd06650         174 LQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDA  207 (333)
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcch
Confidence            32  2222          6899999999976544

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.5e-27  Score=197.49  Aligned_cols=165  Identities=15%  Similarity=0.121  Sum_probs=131.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC---CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL---EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l---~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|..||||++....... .........|..++...   .||+|+.+++++....    .+|+||||+++++|..++.
T Consensus        14 ~~~~~~~~avK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~   88 (330)
T cd05586          14 KKDTRRIYAMKVLSKKEIVA-KKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDS----DLYLVTDYMSGGELFWHLQ   88 (330)
T ss_pred             ECCCCCEEEEEEEeHHHHhh-hhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCC----eEEEEEcCCCCChHHHHHH
Confidence            45789999999997432111 12233445566666554   6999999999987654    5899999999999999887


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                      ..    ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||..|
T Consensus        89 ~~----~~~~~~~~~~~~~qil~al~~LH~--~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y  162 (330)
T cd05586          89 KE----GRFSEDRAKFYIAELVLALEHLHK--YDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEY  162 (330)
T ss_pred             hc----CCCCHHHHHHHHHHHHHHHHHHHH--CCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccc
Confidence            64    348999999999999999999999  7799999999999999999999999998764        245689999


Q ss_pred             cccccCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          151 TRQTYGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +|||+..   .++.          +|+|++|..||.....
T Consensus       163 ~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~  202 (330)
T cd05586         163 LAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT  202 (330)
T ss_pred             cCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH
Confidence            9999622   1222          7999999999976543

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.95  E-value=5.1e-27  Score=196.43  Aligned_cols=165  Identities=18%  Similarity=0.155  Sum_probs=133.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||++...  .........+.+|+.++..++||||+++++++.....  ....+|+||||+. ++|...+..
T Consensus        42 ~~~~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~  118 (359)
T cd07876          42 DTVLGINVAVKKLSRP--FQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIHM  118 (359)
T ss_pred             EcCCCceeEEEEeccc--ccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCC-cCHHHHHhc
Confidence            4678999999998743  1223455677899999999999999999999865432  2235799999996 577777643


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                            .++...+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....+|..|+|
T Consensus       119 ------~~~~~~~~~~~~qi~~~L~~LH~--~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~a  190 (359)
T cd07876         119 ------ELDHERMSYLLYQMLCGIKHLHS--AGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRA  190 (359)
T ss_pred             ------cCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHEEECCCCCEEEecCCCccccccCccCCCCcccCCCCC
Confidence                  37889999999999999999999  7799999999999999999999999998864       33567899999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+.  ..++.          +|+|++|..||.+...
T Consensus       191 PE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~  227 (359)
T cd07876         191 PEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDH  227 (359)
T ss_pred             chhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            9973  22222          7999999999986643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0667|consensus

Probab=99.95  E-value=2.1e-27  Score=202.73  Aligned_cols=165  Identities=22%  Similarity=0.246  Sum_probs=138.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-C-----CcccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-H-----PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-h-----p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      |..||+.||||+++..     .......+.|+.+|..++ |     -|||+++++|...+    |+|||+|.+. .+|.+
T Consensus       207 d~~T~e~VAIKIiKN~-----k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~----HlciVfELL~-~NLYe  276 (586)
T KOG0667|consen  207 DHKTGEIVAIKIIKNK-----KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN----HLCIVFELLS-TNLYE  276 (586)
T ss_pred             ecCCCcEEEEEeeccC-----hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc----ceeeeehhhh-hhHHH
Confidence            7789999999999732     667778889999999987 3     45999999997754    8999999995 79999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC--CcEEEeecCcccc-----ccCCCcc
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN--GLVKIGCDTYTHT-----IENKKYL  148 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~--~~~ki~dfg~~~~-----~~~~~t~  148 (218)
                      +|...  .+.++++..++.++.||+.||.+||+  .+|||+||||+|||+.+.  ..+||+|||.|..     .+...+.
T Consensus       277 llK~n--~f~Glsl~~ir~~~~Qil~~L~~L~~--l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vytYiQSR  352 (586)
T KOG0667|consen  277 LLKNN--KFRGLSLPLVRKFAQQILTALLFLHE--LGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYTYIQSR  352 (586)
T ss_pred             HHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHh--CCeeeccCChhheeeccCCcCceeEEecccccccCCcceeeeecc
Confidence            99987  44679999999999999999999999  669999999999999653  6899999999876     4556688


Q ss_pred             ccccccc--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          149 SATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       149 ~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      .|.|||+  |.+++.          +.||++|-.-|.+.++-.+
T Consensus       353 fYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQ  396 (586)
T KOG0667|consen  353 FYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQ  396 (586)
T ss_pred             ccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHH
Confidence            9999997  555555          6889999887876655443

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.95  E-value=7e-27  Score=193.67  Aligned_cols=165  Identities=13%  Similarity=0.164  Sum_probs=134.1

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|++..... ........+..|+.++..++|++|+.+++++.+..    .+|+||||+++|+|.+++.... 
T Consensus        23 ~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~-   96 (332)
T cd05623          23 KNADKVFAMKILNKWEM-LKRAETACFREERDVLVNGDNQWITTLHYAFQDEN----NLYLVMDYYVGGDLLTLLSKFE-   96 (332)
T ss_pred             CCCCCEEEEEEEeHHHH-HHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC----EEEEEEeccCCCcHHHHHHHhc-
Confidence            45678899999863211 11233445778999999999999999999987643    6899999999999999997643 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQ  153 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aP  153 (218)
                        ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....||+.|+||
T Consensus        97 --~~l~~~~~~~~~~qi~~al~~lH~--~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aP  172 (332)
T cd05623          97 --DRLPEDMARFYLAEMVIAIDSVHQ--LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISP  172 (332)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCeEecCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCH
Confidence              348999999999999999999999  7799999999999999999999999998753         234689999999


Q ss_pred             ccCC-------CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR-------PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~-------~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..       .++.          +|+|++|+.||.....
T Consensus       173 E~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~  213 (332)
T cd05623         173 EILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESL  213 (332)
T ss_pred             HHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCH
Confidence            9632       1111          7999999999976543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG4236|consensus

Probab=99.95  E-value=1.2e-27  Score=200.12  Aligned_cols=162  Identities=22%  Similarity=0.273  Sum_probs=132.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHH-HHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ-FLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~-~l~~~   80 (218)
                      +..+|+.||||++..-...  ......+.+|+.||+.++||+||.+-.-|+..+    ++++|||-+. |+... +|...
T Consensus       585 hRktGrdVAvKvIdKlrFp--~kqesqlR~EVaILq~l~HPGiV~le~M~ET~e----rvFVVMEKl~-GDMLEMILSsE  657 (888)
T KOG4236|consen  585 HRKTGRDVAVKVIDKLRFP--TKQESQLRNEVAILQNLHHPGIVNLECMFETPE----RVFVVMEKLH-GDMLEMILSSE  657 (888)
T ss_pred             ecccCceeeeeeeecccCC--CchHHHHHHHHHHHHhcCCCCeeEEEEeecCCc----eEEEEehhhc-chHHHHHHHhh
Confidence            5679999999999854322  345578899999999999999999988887755    6999999995 56554 45443


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC---CcEEEeecCcccc-------ccCCCcccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN---GLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~---~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                      .   +++++.....++.||+.||.|||.  .+|+|+||||+|||+.+.   .++||||||+++.       .+..||+.|
T Consensus       658 k---gRL~er~TkFlvtQIL~ALr~LH~--knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAY  732 (888)
T KOG4236|consen  658 K---GRLPERITKFLVTQILVALRYLHF--KNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAY  732 (888)
T ss_pred             c---ccchHHHHHHHHHHHHHHHHHhhh--cceeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcCCccc
Confidence            3   569999999999999999999999  779999999999999654   6899999999987       678999999


Q ss_pred             cccccCC--CCch----------hhhhhhCCCCCCcc
Q psy238          151 TRQTYGR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       151 ~aPE~~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      +|||+..  .+..          .|--++|.-||++.
T Consensus       733 LaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd  769 (888)
T KOG4236|consen  733 LAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED  769 (888)
T ss_pred             cCHHHHhhccccccccceeeeEEEEEEecccccCCCc
Confidence            9999732  3333          45667899999754

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.95  E-value=1.8e-26  Score=188.68  Aligned_cols=165  Identities=21%  Similarity=0.255  Sum_probs=129.8

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc--
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR--   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~--   82 (218)
                      ++..||+|++...   ........+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++.....  
T Consensus        45 ~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~~  117 (304)
T cd05096          45 RPLLVAVKILRPD---ANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDED----PLCMITEYMENGDLNQFLSSHHLDD  117 (304)
T ss_pred             cceEEEEEEecCC---CCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEecCC----ceEEEEecCCCCcHHHHHHhccccc
Confidence            4557999998742   22445667889999999999999999999997654    48999999999999999875421  


Q ss_pred             -------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-------
Q psy238           83 -------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-------  142 (218)
Q Consensus        83 -------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-------  142 (218)
                                   ....+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++...       
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~--~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~  195 (304)
T cd05096         118 KEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS--LNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYR  195 (304)
T ss_pred             cccccccccccccccccccHHHHHHHHHHHHHHHHHHHH--CCccccCcchhheEEcCCccEEECCCccceecccCceeE
Confidence                         11236788899999999999999999  67999999999999999999999999988641       


Q ss_pred             ---cCCCcccccccccC--CCCch----------hhhhhh--CCCCCCcchhh
Q psy238          143 ---ENKKYLSATRQTYG--RPISG----------QYEIVT--KTNNVTEKKKE  178 (218)
Q Consensus       143 ---~~~~t~~y~aPE~~--~~~~~----------~~ei~t--g~~p~~~~~~e  178 (218)
                         ...++..|+|||+.  ..++.          ++++++  +..||.+...+
T Consensus       196 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~  248 (304)
T cd05096         196 IQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDE  248 (304)
T ss_pred             ecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHH
Confidence               23346789999962  22222          677765  56777765443

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG4250|consensus

Probab=99.95  E-value=6.3e-28  Score=207.29  Aligned_cols=166  Identities=23%  Similarity=0.217  Sum_probs=137.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ++.||+.||||.+..   .+.....+...+|+++|++++|||||+++++=.....  ....-.+|||||+||||..++..
T Consensus        34 nketG~~vAvK~~~~---~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~  110 (732)
T KOG4250|consen   34 NKETGRLVAVKTFNK---ESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNS  110 (732)
T ss_pred             ccccccchhHHhhhh---hcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcC
Confidence            578999999999875   2345677888999999999999999999887544321  12345799999999999999987


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec--C--CcEEEeecCcccc-------ccCCCcc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH--N--GLVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~--~--~~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      .. +...+|+..++.++..++.||.|||+  +||+||||||.||++..  +  -.-||+|||.|+.       .+..||.
T Consensus       111 PE-N~~GLpE~e~l~lL~d~~~al~~LrE--n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~  187 (732)
T KOG4250|consen  111 PE-NAYGLPESEFLDLLSDLVSALRHLRE--NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTE  187 (732)
T ss_pred             cc-cccCCCHHHHHHHHHHHHHHHHHHHH--cCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCch
Confidence            54 44569999999999999999999999  77999999999999953  3  3678999999976       6789999


Q ss_pred             cccccccCC--CCch-----------hhhhhhCCCCCC
Q psy238          149 SATRQTYGR--PISG-----------QYEIVTKTNNVT  173 (218)
Q Consensus       149 ~y~aPE~~~--~~~~-----------~~ei~tg~~p~~  173 (218)
                      .|++||+..  .+++           +|+..||..||.
T Consensus       188 ~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~  225 (732)
T KOG4250|consen  188 EYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFI  225 (732)
T ss_pred             hhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCC
Confidence            999999743  1211           899999999995

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.95  E-value=1.6e-26  Score=187.54  Aligned_cols=168  Identities=13%  Similarity=0.127  Sum_probs=136.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...... .......+.+|+.+++.++|++|+.+++++...+    .+|+||+|+++++|.+++....
T Consensus        21 ~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~   95 (285)
T cd05632          21 VRATGKMYACKRLEKKRIK-KRKGESMALNEKQILEKVNSQFVVNLAYAYETKD----ALCLVLTIMNGGDLKFHIYNMG   95 (285)
T ss_pred             ECCCCcEEEEEEeehhhhh-hhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCC----EEEEEEEeccCccHHHHHHHhc
Confidence            4567899999998743211 1233455778999999999999999998886643    5899999999999998887543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      .  ..+++..+..++.|++.||.|||+  .+|+||||+|+||+++.++.++|+|||++..       ....++..|+|||
T Consensus        96 ~--~~~~~~~~~~~~~ql~~~l~~lH~--~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE  171 (285)
T cd05632          96 N--PGFEEERALFYAAEILCGLEDLHR--ENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPE  171 (285)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHh--CCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccCCCCCcCccChH
Confidence            2  359999999999999999999999  7799999999999999999999999998753       3356799999999


Q ss_pred             cC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          155 YG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       155 ~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +.  ..++.          ++++++|..||......
T Consensus       172 ~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~  207 (285)
T cd05632         172 VLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEK  207 (285)
T ss_pred             HhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence            72  22222          78999999999876543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=5.7e-27  Score=198.34  Aligned_cols=153  Identities=21%  Similarity=0.271  Sum_probs=127.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||+|...          ...+.+|+.+|+.++||||++++++|....    ..++||+++. ++|..++....
T Consensus       113 d~~~~~~vaiK~~~----------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~----~~~lv~e~~~-~~L~~~l~~~~  177 (391)
T PHA03212        113 DNKTCEHVVIKAGQ----------RGGTATEAHILRAINHPSIIQLKGTFTYNK----FTCLILPRYK-TDLYCYLAAKR  177 (391)
T ss_pred             ECCCCCEEEEechh----------hhhhHHHHHHHHhCCCCCCCCEeEEEEECC----eeEEEEecCC-CCHHHHHHhcC
Confidence            56788999999653          124678999999999999999999987643    5899999994 79998887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          .+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..         ....||+.|+|
T Consensus       178 ----~l~~~~~~~i~~qi~~aL~ylH~--~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~a  251 (391)
T PHA03212        178 ----NIAICDILAIERSVLRAIQYLHE--NRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNA  251 (391)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCC
Confidence                48999999999999999999999  7799999999999999999999999999853         23578999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcc
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ||+.  ..++.          +|++++|..||.+.
T Consensus       252 PE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~  286 (391)
T PHA03212        252 PELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEK  286 (391)
T ss_pred             hhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCc
Confidence            9973  23333          68999999887543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.95  E-value=7.5e-27  Score=211.10  Aligned_cols=168  Identities=20%  Similarity=0.189  Sum_probs=136.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++... ..........+.+|+.++..++||||+++++++.+.+    ..|+||+|++|++|.+++....
T Consensus        23 d~~tg~~VAIK~I~~~-l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~----~lyLVMEY~eGGSL~~lL~s~~   97 (932)
T PRK13184         23 DPVCSRRVALKKIRED-LSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGD----PVYYTMPYIEGYTLKSLLKSVW   97 (932)
T ss_pred             ECCCCcEEEEEEECcc-cccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCC----EEEEEEEcCCCCCHHHHHHHhh
Confidence            4668999999998742 1223455678899999999999999999999987654    5899999999999999987532


Q ss_pred             cc-------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc------------
Q psy238           82 RN-------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI------------  142 (218)
Q Consensus        82 ~~-------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~------------  142 (218)
                      ..       ...++...++.++.||+.||.|||+  .||+||||||+|||++.++.++|+|||++...            
T Consensus        98 ~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs--~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~  175 (932)
T PRK13184         98 QKESLSKELAEKTSVGAFLSIFHKICATIEYVHS--KGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDV  175 (932)
T ss_pred             hccccchhhhcccCHHHHHHHHHHHHHHHHHHHH--CCccccCCchheEEEcCCCCEEEEecCcceeccccccccccccc
Confidence            11       1235667889999999999999999  77999999999999999999999999987542            


Q ss_pred             --------------cCCCcccccccccC--CCCch----------hhhhhhCCCCCCcch
Q psy238          143 --------------ENKKYLSATRQTYG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       143 --------------~~~~t~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                                    ...||+.|+|||+.  .+.+.          +++|+||..||....
T Consensus       176 ~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~  235 (932)
T PRK13184        176 DERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKK  235 (932)
T ss_pred             ccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcc
Confidence                          13689999999973  23332          799999999997643

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.95  E-value=4.2e-27  Score=202.01  Aligned_cols=166  Identities=17%  Similarity=0.187  Sum_probs=130.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC----CCCCeEEEEEeccCCCCHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH----NDKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~----~~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +..+|..||||.+...        .....+|+.+|+.++||||+++++++....    .....+++||||++ ++|.+++
T Consensus        87 ~~~~~~~vAiK~i~~~--------~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~-~~l~~~~  157 (440)
T PTZ00036         87 CIDTSEKVAIKKVLQD--------PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIP-QTVHKYM  157 (440)
T ss_pred             ECCCCCEEEEEEEecC--------cchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCC-ccHHHHH
Confidence            4568899999988632        112346999999999999999988775422    12235779999996 6888887


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-cEEEeecCcccc-------ccCCCccc
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHT-------IENKKYLS  149 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~-------~~~~~t~~  149 (218)
                      .........+++..++.++.||+.||.|||+  .+|+||||||+|||++.++ .++|+|||++..       ....+|+.
T Consensus       158 ~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~--~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~~~~~t~~  235 (440)
T PTZ00036        158 KHYARNNHALPLFLVKLYSYQLCRALAYIHS--KFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVSYICSRF  235 (440)
T ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH--CCEecCCcCHHHEEEcCCCCceeeeccccchhccCCCCcccCCCCcC
Confidence            7654444669999999999999999999999  7799999999999998664 799999999864       34567899


Q ss_pred             ccccccC--C-CCch----------hhhhhhCCCCCCcchhh
Q psy238          150 ATRQTYG--R-PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       150 y~aPE~~--~-~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+|||+.  . .++.          +|+|++|..||.+....
T Consensus       236 y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~  277 (440)
T PTZ00036        236 YRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSV  277 (440)
T ss_pred             ccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence            9999962  2 2332          79999999999876544

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.95  E-value=1.9e-26  Score=187.11  Aligned_cols=166  Identities=13%  Similarity=0.141  Sum_probs=135.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||.+...... .......+.+|+.++..++|++|+.+++.+.+.+    .+|+||+|+++++|.+++....
T Consensus        21 ~~~~~~~~avK~~~~~~~~-~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~g~~L~~~l~~~~   95 (285)
T cd05630          21 VRATGKMYACKKLEKKRIK-KRKGESMALNEKQILEKVNSRFVVSLAYAYETKD----ALCLVLTLMNGGDLKFHIYHMG   95 (285)
T ss_pred             EcCCCceEEEEEEehhhcc-chHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCC----EEEEEEEecCCCcHHHHHHHhc
Confidence            4568899999998743222 1233456778999999999999999999887643    6899999999999999986543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      .  ..+++..+..++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..       ....|+..|+|||
T Consensus        96 ~--~~l~~~~~~~~~~qi~~~l~~lH~--~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE  171 (285)
T cd05630          96 E--AGFEEGRAVFYAAEICCGLEDLHQ--ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPE  171 (285)
T ss_pred             c--cCCCHHHHHHHHHHHHHHHHHHHh--CCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccCCCCCccccChH
Confidence            2  358999999999999999999999  6799999999999999999999999998764       2346889999999


Q ss_pred             cCC--CCch----------hhhhhhCCCCCCcch
Q psy238          155 YGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +..  .++.          ++++++|..||....
T Consensus       172 ~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~  205 (285)
T cd05630         172 VVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRK  205 (285)
T ss_pred             HHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCC
Confidence            732  2222          799999999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.95  E-value=1.1e-26  Score=194.72  Aligned_cols=166  Identities=16%  Similarity=0.130  Sum_probs=134.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC--CCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH--NDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~--~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..++..||||++...  .........+.+|+.+++.++||||+.+++++....  .....+|+||||++ ++|..++..
T Consensus        45 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~  121 (364)
T cd07875          45 DAILERNVAIKKLSRP--FQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQM  121 (364)
T ss_pred             ECCCCcEEEEEEeCcc--ccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEEeCCC-CCHHHHHHh
Confidence            4567899999998742  222344567889999999999999999999876532  12346899999996 588887753


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                            .++...+..++.|++.||.|||+  ++|+||||+|+|||++.++.++|+|||++..       ....+|..|+|
T Consensus       122 ------~~~~~~~~~~~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~a  193 (364)
T cd07875         122 ------ELDHERMSYLLYQMLCGIKHLHS--AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRA  193 (364)
T ss_pred             ------cCCHHHHHHHHHHHHHHHHHHhh--CCeecCCCCHHHEEECCCCcEEEEeCCCccccCCCCcccCCcccCCcCC
Confidence                  27889999999999999999999  7799999999999999999999999999865       34578999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+  +..++.          +|+|++|..||.+....
T Consensus       194 PE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~  231 (364)
T cd07875         194 PEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHI  231 (364)
T ss_pred             HHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHH
Confidence            997  223322          79999999999876543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0612|consensus

Probab=99.95  E-value=2.5e-28  Score=218.14  Aligned_cols=164  Identities=16%  Similarity=0.170  Sum_probs=138.0

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      +.|+..||.|+++.-.+ ........|..|-.+|...+.+=|+.++..|.+..    ++||||+|++||+|..++..+. 
T Consensus        97 k~t~~VYAMK~lnK~eM-lKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~----~LYlVMdY~pGGDlltLlSk~~-  170 (1317)
T KOG0612|consen   97 KSTEKVYAMKILNKWEM-LKRAETACFREERDIMVFGNSEWIVQLHYAFQDER----YLYLVMDYMPGGDLLTLLSKFD-  170 (1317)
T ss_pred             eccccchhHHHhhHHHH-hhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCcc----ceEEEEecccCchHHHHHhhcC-
Confidence            56888999999874221 11344567888999999999999999999998865    6999999999999999999764 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQ  153 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aP  153 (218)
                         ++|+..++.|+..|+.||+.||+  .|+|||||||+|||+|..|+++|+|||.+-.         ...+|||.|++|
T Consensus       171 ---~~pE~~ArFY~aEiVlAldslH~--mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISP  245 (1317)
T KOG0612|consen  171 ---RLPEDWARFYTAEIVLALDSLHS--MGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISP  245 (1317)
T ss_pred             ---CChHHHHHHHHHHHHHHHHHHHh--ccceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCH
Confidence               59999999999999999999999  5699999999999999999999999997643         678999999999


Q ss_pred             cc----CCC---------Cch----hhhhhhCCCCCCcchh
Q psy238          154 TY----GRP---------ISG----QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~----~~~---------~~~----~~ei~tg~~p~~~~~~  177 (218)
                      |+    +..         |+.    +|||+.|..||...+-
T Consensus       246 EvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadsl  286 (1317)
T KOG0612|consen  246 EVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSL  286 (1317)
T ss_pred             HHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHH
Confidence            96    111         111    7999999999985543

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.95  E-value=1.2e-26  Score=193.85  Aligned_cols=165  Identities=17%  Similarity=0.149  Sum_probs=133.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||.+...  .........+.+|+.+++.++||||+++++++.....  ....+|+||||++ ++|...+..
T Consensus        38 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~  114 (355)
T cd07874          38 DAVLDRNVAIKKLSRP--FQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIQM  114 (355)
T ss_pred             ecCCCceEEEEEeCCc--ccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEhhhhc-ccHHHHHhh
Confidence            4568899999998743  2223455678889999999999999999998865331  2245799999996 578777753


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                            .++...++.++.|++.||.|||+  +||+||||+|+|||++.++.++|+|||++..       ....+|..|+|
T Consensus       115 ------~l~~~~~~~~~~qi~~aL~~LH~--~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~a  186 (355)
T cd07874         115 ------ELDHERMSYLLYQMLCGIKHLHS--AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRA  186 (355)
T ss_pred             ------cCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCChHHEEECCCCCEEEeeCcccccCCCccccCCccccCCccC
Confidence                  38889999999999999999999  7799999999999999999999999999865       34578999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+  +..++.          +++|++|..||.+...
T Consensus       187 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  223 (355)
T cd07874         187 PEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY  223 (355)
T ss_pred             HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            997  222222          7999999999986543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.95  E-value=2.4e-26  Score=190.02  Aligned_cols=167  Identities=16%  Similarity=0.174  Sum_probs=135.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+....  ........+.+|+.+++.++||||++++++|....    .+|+||||+++++|.+++....
T Consensus        21 ~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~   94 (327)
T cd08227          21 YKPTGEYVTVRRINLEA--CTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADN----ELWVVTSFMAYGSAKDLICTHF   94 (327)
T ss_pred             ecccCcEEEEEEechhh--ccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECC----EEEEEEeccCCCcHHHHHHhhc
Confidence            46789999999997532  22345567888999999999999999999997754    5899999999999999997653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------------ccCCC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------------IENKK  146 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------------~~~~~  146 (218)
                      .  ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++++||+....               ....+
T Consensus        95 ~--~~l~~~~~~~i~~qi~~~L~~LH~--~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (327)
T cd08227          95 M--DGMSELAIAYILQGVLKALDYIHH--MGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVK  170 (327)
T ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHH--CCEecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccc
Confidence            2  348999999999999999999999  7799999999999999999999999875322               12345


Q ss_pred             cccccccccCC----CCch----------hhhhhhCCCCCCcchhh
Q psy238          147 YLSATRQTYGR----PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       147 t~~y~aPE~~~----~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +..|+|||+..    .++.          ++++++|..||......
T Consensus       171 ~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~  216 (327)
T cd08227         171 VLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPAT  216 (327)
T ss_pred             eecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchh
Confidence            67799999732    2222          68999999999765443

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.95  E-value=1.2e-26  Score=195.26  Aligned_cols=165  Identities=20%  Similarity=0.248  Sum_probs=130.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .++..||||.+...   ........+.+|+.+++.+ +||||++++++|...+    .+++||||+++|+|.+++.....
T Consensus        66 ~~~~~vavK~~~~~---~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~~  138 (374)
T cd05106          66 DNVLRVAVKMLKAS---AHTDEREALMSELKILSHLGQHKNIVNLLGACTHGG----PVLVITEYCCYGDLLNFLRKKAE  138 (374)
T ss_pred             cccceeEEEeccCC---CCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCC----CeEEeHhhccCCcHHHHHHhhhh
Confidence            34568999999743   1233456788999999999 8999999999987654    58999999999999999865321


Q ss_pred             ------------------------------------------------------------------cCCCCCHHHHHHHH
Q psy238           83 ------------------------------------------------------------------NVKKLPLSAWKRWC   96 (218)
Q Consensus        83 ------------------------------------------------------------------~~~~~~~~~~~~~~   96 (218)
                                                                                        ...++++..++.++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  218 (374)
T cd05106         139 TFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFS  218 (374)
T ss_pred             hhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHH
Confidence                                                                              11247888999999


Q ss_pred             HHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccccccCC--CCch---
Q psy238           97 SQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATRQTYGR--PISG---  161 (218)
Q Consensus        97 ~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~aPE~~~--~~~~---  161 (218)
                      .||+.||.|||+  ++|+||||+|+|||++.++.++|+|||++...          ...++..|+|||+..  .++.   
T Consensus       219 ~qi~~aL~yLH~--~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  296 (374)
T cd05106         219 SQVAQGMDFLAS--KNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSD  296 (374)
T ss_pred             HHHHHHHHHHHH--CCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCcccc
Confidence            999999999999  77999999999999999999999999988641          123456799999632  2222   


Q ss_pred             -------hhhhhh-CCCCCCcchh
Q psy238          162 -------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       162 -------~~ei~t-g~~p~~~~~~  177 (218)
                             ++++++ |..||.....
T Consensus       297 vwSlGvil~ellt~G~~Pf~~~~~  320 (374)
T cd05106         297 VWSYGILLWEIFSLGKSPYPGILV  320 (374)
T ss_pred             HHHHHHHHHHHHhCCCCCCccccc
Confidence                   688987 9999976543

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.95  E-value=7.2e-27  Score=195.14  Aligned_cols=157  Identities=18%  Similarity=0.191  Sum_probs=129.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...   ........+.+|+.++..++|+||+++++++...+    .+++||||+++++|....    
T Consensus        95 ~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~----  163 (353)
T PLN00034         95 HRPTGRLYALKVIYGN---HEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNG----EIQVLLEFMDGGSLEGTH----  163 (353)
T ss_pred             ECCCCCEEEEEEEecC---CcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCC----eEEEEEecCCCCcccccc----
Confidence            4567899999998642   22445667889999999999999999999987644    589999999999986532    


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          ..++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||..|+||
T Consensus       164 ----~~~~~~~~~i~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aP  237 (353)
T PLN00034        164 ----IADEQFLADVARQILSGIAYLHR--RHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSP  237 (353)
T ss_pred             ----cCCHHHHHHHHHHHHHHHHHHHH--CCEeecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCccccCc
Confidence                25677888999999999999999  7799999999999999999999999998864        245789999999


Q ss_pred             ccCC------CC-----c------hhhhhhhCCCCCCcc
Q psy238          154 TYGR------PI-----S------GQYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~~------~~-----~------~~~ei~tg~~p~~~~  175 (218)
                      |+..      .+     +      .+|++++|+.||...
T Consensus       238 E~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  276 (353)
T PLN00034        238 ERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVG  276 (353)
T ss_pred             cccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence            9631      11     1      179999999999743

>KOG0193|consensus

Probab=99.95  E-value=2.8e-27  Score=200.33  Aligned_cols=160  Identities=22%  Similarity=0.271  Sum_probs=138.8

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      .+||||++......  +...+.|.+|+.++++-+|.||+-+.|+|..+.     +.+|+.+|.|.+|..+++...   ..
T Consensus       415 GdVAVK~Lnv~~pt--~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~-----~AIiTqwCeGsSLY~hlHv~e---tk  484 (678)
T KOG0193|consen  415 GDVAVKLLNVDDPT--PEQLQAFKNEVAVLKKTRHENILLFMGACMNPP-----LAIITQWCEGSSLYTHLHVQE---TK  484 (678)
T ss_pred             cceEEEEEecCCCC--HHHHHHHHHHHHHHhhcchhhheeeehhhcCCc-----eeeeehhccCchhhhhccchh---hh
Confidence            37999999976433  568899999999999999999999999998765     599999999999999998765   35


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccccccC
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTYG  156 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~~  156 (218)
                      |.+.+.+.|+.|+++|+.|||.  ++|||+|||..||++++++.|+|+|||++..          ....|..-|||||+.
T Consensus       485 fdm~~~idIAqQiaqGM~YLHA--K~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvI  562 (678)
T KOG0193|consen  485 FDMNTTIDIAQQIAQGMDYLHA--KNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVI  562 (678)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhh--hhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHH
Confidence            8899999999999999999999  7799999999999999999999999999876          446678899999983


Q ss_pred             C-----CCch----------hhhhhhCCCCCCcchhh
Q psy238          157 R-----PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       157 ~-----~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .     +++.          .|||++|..||.....+
T Consensus       563 Rmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~d  599 (678)
T KOG0193|consen  563 RMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRD  599 (678)
T ss_pred             hhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChh
Confidence            2     4444          79999999999844433

>KOG0577|consensus

Probab=99.94  E-value=7.2e-28  Score=203.64  Aligned_cols=143  Identities=22%  Similarity=0.295  Sum_probs=127.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+.+.||||.++.++..+ ....+.++.|+..|.++.|||+|.+-|+|.....    .|+|||||- ||-.+++.-+.
T Consensus        47 d~~n~evVAIKKMsySGKQs-~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~T----aWLVMEYCl-GSAsDlleVhk  120 (948)
T KOG0577|consen   47 DVRNSEVVAIKKMSYSGKQS-NEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHT----AWLVMEYCL-GSASDLLEVHK  120 (948)
T ss_pred             ccCccceeeeeecccccccc-HHHHHHHHHHHHHHHhccCCCcccccceeeccch----HHHHHHHHh-ccHHHHHHHHh
Confidence            67788999999999876444 5566789999999999999999999999987553    799999995 79999888776


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~  155 (218)
                         .++.+-.+..++.+.+.||.|||+  .+.||||||..|||+++.|.|+|+|||.+..    .+++||+.|||||+
T Consensus       121 ---KplqEvEIAAi~~gaL~gLaYLHS--~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFvGTPywMAPEV  193 (948)
T KOG0577|consen  121 ---KPLQEVEIAAITHGALQGLAYLHS--HNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSFVGTPYWMAPEV  193 (948)
T ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHH--hhHHhhhccccceEecCCCeeeeccccchhhcCchhcccCCccccchhH
Confidence               468888899999999999999999  7799999999999999999999999998776    78999999999997

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.94  E-value=1.7e-26  Score=187.35  Aligned_cols=167  Identities=17%  Similarity=0.237  Sum_probs=129.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC---CCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL---EHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l---~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +|..||||.+......  ......+.+|+.+++.+   .||||+++++++.... .....+++||||++ ++|.+++...
T Consensus        26 ~~~~vavK~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~  102 (290)
T cd07862          26 GGRFVALKRVRVQTGE--EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKV  102 (290)
T ss_pred             CCeEEEEEEEecccCC--CCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccCC-CCHHHHHHhC
Confidence            4678999998754221  12223445666666554   7999999999886432 22356899999996 6999998765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQ  153 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aP  153 (218)
                      ..  ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....+|+.|+||
T Consensus       103 ~~--~~~~~~~~~~i~~qi~~aL~~lH~--~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aP  178 (290)
T cd07862         103 PE--PGVPTETIKDMMFQLLRGLDFLHS--HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAP  178 (290)
T ss_pred             CC--CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeCCCCHHHEEEcCCCCEEEccccceEeccCCcccccccccccccCh
Confidence            32  348999999999999999999999  7799999999999999999999999998864       345678999999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.  ..++.          +|++++|..||.+....
T Consensus       179 E~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~  215 (290)
T cd07862         179 EVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV  215 (290)
T ss_pred             HHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHH
Confidence            962  22221          79999999999876554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0194|consensus

Probab=99.94  E-value=7.8e-27  Score=197.42  Aligned_cols=162  Identities=23%  Similarity=0.276  Sum_probs=137.1

Q ss_pred             EEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCC
Q psy238            9 VVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP   88 (218)
Q Consensus         9 vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~   88 (218)
                      ||||....+ ..........+++|.++|+.++|||||++||++.+..+    +++|||+|+||+|.++|.....   .++
T Consensus       189 VAvK~~k~~-~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~P----l~ivmEl~~gGsL~~~L~k~~~---~v~  260 (474)
T KOG0194|consen  189 VAVKTTKGS-SELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEP----LMLVMELCNGGSLDDYLKKNKK---SLP  260 (474)
T ss_pred             eEEEeeccc-ccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCc----cEEEEEecCCCcHHHHHHhCCC---CCC
Confidence            899998842 23446778899999999999999999999999988765    8999999999999999998652   599


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------cCCCcccccccccCC--C
Q psy238           89 LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------ENKKYLSATRQTYGR--P  158 (218)
Q Consensus        89 ~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------~~~~t~~y~aPE~~~--~  158 (218)
                      ......++.+++.||+|||+  .++|||||-.+|+|++.++.+||+|||++...        ...-...|+|||...  .
T Consensus       261 ~~ek~~~~~~AA~Gl~YLh~--k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~  338 (474)
T KOG0194|consen  261 TLEKLRFCYDAARGLEYLHS--KNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGI  338 (474)
T ss_pred             HHHHHHHHHHHHhHHHHHHH--CCCcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCc
Confidence            99999999999999999999  77999999999999999999999999998863        223458999999622  2


Q ss_pred             Cch----------hhhhhh-CCCCCCcchhhhh
Q psy238          159 ISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       159 ~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      ++.          ++||++ |..||.+....+.
T Consensus       339 ~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v  371 (474)
T KOG0194|consen  339 FSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEV  371 (474)
T ss_pred             cccccchhheeeeEEeeeccCCCCCCCCCHHHH
Confidence            222          688888 8889988776643

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.94  E-value=3e-26  Score=182.26  Aligned_cols=165  Identities=20%  Similarity=0.280  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+......  ......+.+|+.+++.++||||+++++++....    ..|+||||+++++|.+++....
T Consensus        21 ~~~~~~~~~~k~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~   94 (256)
T cd08529          21 RKADKRVYAMKQIDLSKMN--RREREEAIDEARVLAKLDSSYIIRYYESFLDKG----KLNIVMEYAENGDLHKLLKMQR   94 (256)
T ss_pred             EcCCCcEEEEEEeehhhCC--HHHHHHHHHHHHHHHhcCCCCeehheeeeccCC----EEEEEEEeCCCCcHHHHHHHhc
Confidence            3467899999998754222  445667889999999999999999999987643    6899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .  ..++...++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....+++.|+||
T Consensus        95 ~--~~~~~~~~~~i~~~l~~al~~lH~--~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aP  170 (256)
T cd08529          95 G--RPLPEDQVWRFFIQILLGLAHLHS--KKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSP  170 (256)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCccccCH
Confidence            2  458999999999999999999999  7799999999999999999999999998764        234678899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  .++.          ++++++|..||....
T Consensus       171 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  205 (256)
T cd08529         171 ELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN  205 (256)
T ss_pred             HHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence            9732  2222          789999999997665

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.94  E-value=1.8e-26  Score=194.04  Aligned_cols=168  Identities=17%  Similarity=0.187  Sum_probs=135.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCC-CCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND-KPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||.+...  .........+.+|+.++..++||||+++++++...... ...+|+||+|+. ++|..++...
T Consensus        21 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~   97 (372)
T cd07853          21 DPRDGKRVALKKMPNV--FQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTELMQ-SDLHKIIVSP   97 (372)
T ss_pred             ECCCCCEEEEEecccc--ccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEeeccc-cCHHHHHhcC
Confidence            4578999999988632  12233456788999999999999999999998765421 236899999995 6888887643


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSAT  151 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~  151 (218)
                          ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....++..|+
T Consensus        98 ----~~l~~~~~~~~~~qi~~aL~~LH~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~  171 (372)
T cd07853          98 ----QPLSSDHVKVFLYQILRGLKYLHS--AGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYR  171 (372)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHh--CCeeCCCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcC
Confidence                358999999999999999999999  7799999999999999999999999998864         2345688999


Q ss_pred             ccccCC--C-Cch----------hhhhhhCCCCCCcchhh
Q psy238          152 RQTYGR--P-ISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       152 aPE~~~--~-~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |||+..  . ++.          +++|++|+.||.+....
T Consensus       172 aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~  211 (372)
T cd07853         172 APEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPI  211 (372)
T ss_pred             CHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHH
Confidence            999732  1 222          79999999999876543

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0574|consensus

Probab=99.94  E-value=7.1e-28  Score=189.79  Aligned_cols=158  Identities=15%  Similarity=0.195  Sum_probs=137.5

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      ++.++|..||||.+..      ....+.+..||.||+++..|.+|++||.|....    .+|+|||||..||+.+.++.+
T Consensus        53 IH~EsG~v~AIK~VPV------~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~s----DLWIVMEYCGAGSiSDI~R~R  122 (502)
T KOG0574|consen   53 IHRESGHVLAIKKVPV------DTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHS----DLWIVMEYCGAGSISDIMRAR  122 (502)
T ss_pred             HHhccCcEEEEEecCc------cchHHHHHHHHHHHHHcCCchhhhhhhhhccCC----ceEeehhhcCCCcHHHHHHHh
Confidence            4678999999999985      356778999999999999999999999876544    399999999889999999886


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      +   .++.+..+-.+++..+.||.|||.  ..-||||||..|||++-+|+.+|+|||.+..        .+..||+.|||
T Consensus       123 ~---K~L~E~EIs~iL~~TLKGL~YLH~--~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMA  197 (502)
T KOG0574|consen  123 R---KPLSEQEISAVLRDTLKGLQYLHD--LKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMA  197 (502)
T ss_pred             c---CCccHHHHHHHHHHHHhHHHHHHH--HHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCccccc
Confidence            5   569999999999999999999999  4589999999999999999999999998765        77899999999


Q ss_pred             cccCC--CC----------chhhhhhhCCCCCC
Q psy238          153 QTYGR--PI----------SGQYEIVTKTNNVT  173 (218)
Q Consensus       153 PE~~~--~~----------~~~~ei~tg~~p~~  173 (218)
                      ||+..  .+          -.+.||.-|+.||.
T Consensus       198 PEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYs  230 (502)
T KOG0574|consen  198 PEVIEEIGYDTKADIWSLGITAIEMAEGRPPYS  230 (502)
T ss_pred             HHHHHHhccchhhhHhhhcchhhhhhcCCCCcc
Confidence            99722  11          12688888999986

>KOG0201|consensus

Probab=99.94  E-value=3.4e-28  Score=199.11  Aligned_cols=160  Identities=21%  Similarity=0.228  Sum_probs=139.1

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +|..+++.||||++....   .......+++|+.+|..++++||..+|+.|....    .++++||||.||++.+.+...
T Consensus        33 ~d~~t~k~vAiKii~Le~---~~deIediqqei~~Ls~~~~~~it~yygsyl~g~----~LwiiMey~~gGsv~~lL~~~  105 (467)
T KOG0201|consen   33 IDNKTKKVVAIKIIDLEE---AEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGT----KLWIIMEYCGGGSVLDLLKSG  105 (467)
T ss_pred             eeccccceEEEEEechhh---cchhhHHHHHHHHHHHhcCcchHHhhhhheeecc----cHHHHHHHhcCcchhhhhccC
Confidence            478899999999999743   3445677899999999999999999999998754    599999999999999999865


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..+..++++++.||.|||+  .+.+|||||+.|||++.+|.++++|||.+..        .+..||+.|||
T Consensus       106 ~----~~~E~~i~~ilre~l~~l~ylH~--~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMA  179 (467)
T KOG0201|consen  106 N----ILDEFEIAVILREVLKGLDYLHS--EKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMA  179 (467)
T ss_pred             C----CCccceeeeehHHHHHHhhhhhh--cceecccccccceeEeccCcEEEEecceeeeeechhhccccccccccccc
Confidence            3    25788888899999999999999  7799999999999999999999999998765        67899999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCC
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVT  173 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~  173 (218)
                      ||+  +..++.          ++||.+|.+|+.
T Consensus       180 PEVI~~~~Y~~KADIWSLGITaiEla~GePP~s  212 (467)
T KOG0201|consen  180 PEVIKQSGYDTKADIWSLGITAIELAKGEPPHS  212 (467)
T ss_pred             hhhhccccccchhhhhhhhHHHHHHhcCCCCCc
Confidence            998  333333          799999999996

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.94  E-value=2.2e-26  Score=209.00  Aligned_cols=171  Identities=15%  Similarity=0.257  Sum_probs=137.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..||+|++....  ........+..|+.+|..+.||||++++++|....  ...+||||||+++++|.++|....
T Consensus        34 dk~tg~~vAlKvIk~~~--l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~--~~~lyIVMEY~~gGSL~~lL~k~~  109 (1021)
T PTZ00266         34 HKRTQEFFCWKAISYRG--LKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKA--NQKLYILMEFCDAGDLSRNIQKCY  109 (1021)
T ss_pred             ECCCCeEEEEEEEeccc--cCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecC--CCEEEEEEeCCCCCcHHHHHHHHh
Confidence            45678899999997542  22445677889999999999999999999887643  246899999999999999998754


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCcccCCCCCCcEEEecC-----------------CcEEEeecCcc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCS-----PPIIHGNLTCDTIFIQHN-----------------GLVKIGCDTYT  139 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~-----~~iiH~dlkp~NiLl~~~-----------------~~~ki~dfg~~  139 (218)
                      .....+++..++.|+.||+.||.|||+.+     .+|+|+||+|+||||+.+                 +.++|+|||++
T Consensus       110 ~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlA  189 (1021)
T PTZ00266        110 KMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLS  189 (1021)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCcc
Confidence            44456999999999999999999999832     349999999999999642                 45899999988


Q ss_pred             cc-------ccCCCcccccccccC--C--CCch----------hhhhhhCCCCCCcch
Q psy238          140 HT-------IENKKYLSATRQTYG--R--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       140 ~~-------~~~~~t~~y~aPE~~--~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ..       ....+|+.|+|||+.  .  .++.          +|+|++|..||....
T Consensus       190 r~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~  247 (1021)
T PTZ00266        190 KNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN  247 (1021)
T ss_pred             ccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence            64       345789999999963  1  1222          799999999997543

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.94  E-value=4.4e-26  Score=185.25  Aligned_cols=164  Identities=17%  Similarity=0.236  Sum_probs=136.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||+|++..... ........+.+|+.+++.+.||||+++++++.+..    .+|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~~~~~-   95 (290)
T cd05580          22 HKGSGKYYALKILSKAKI-VKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDS----NLYLVMEYVPGGELFSHLRKS-   95 (290)
T ss_pred             EcCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCC----eEEEEEecCCCCCHHHHHHHc-
Confidence            345789999999874321 12344567889999999999999999999987643    589999999999999999765 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYG  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~  156 (218)
                         ..++...+..++.|++.||.|||+  .+++|+||+|.|||++.++.++|+|||++..     ....+++.|+|||..
T Consensus        96 ---~~l~~~~~~~~~~qil~~l~~lH~--~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~  170 (290)
T cd05580          96 ---GRFPEPVARFYAAQVVLALEYLHS--LDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEII  170 (290)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCEecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCCCccccChhhh
Confidence               348999999999999999999999  7799999999999999999999999998875     345678899999963


Q ss_pred             C--CCch----------hhhhhhCCCCCCcch
Q psy238          157 R--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       157 ~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      .  ..+.          ++++++|..||....
T Consensus       171 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  202 (290)
T cd05580         171 LSKGYGKAVDWWALGILIYEMLAGYPPFFDDN  202 (290)
T ss_pred             cCCCCCccccHHHHHHHHHHHHhCCCCCCCCC
Confidence            2  2211          699999999997655

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.94  E-value=5e-26  Score=182.70  Aligned_cols=163  Identities=18%  Similarity=0.240  Sum_probs=132.0

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      ..+..||+|.+...   ........+.+|+.++..+.||||+++++++....    .+++||||+++++|.+++....  
T Consensus        31 ~~~~~vaik~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~--  101 (266)
T cd05064          31 KRELPVAIHTLRAG---CSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGN----TMMIVTEYMSNGALDSFLRKHE--  101 (266)
T ss_pred             CceeeEEEEecCCC---CCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCC----CcEEEEEeCCCCcHHHHHHhCC--
Confidence            45678999998742   22344567889999999999999999999987543    5899999999999999997643  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQT  154 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE  154 (218)
                       ..+++..++.++.|++.||.|||+  .+++||||+|+|||++.++.++++|||.+...         ...++..|+|||
T Consensus       102 -~~l~~~~~~~~~~~i~~al~~lH~--~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  178 (266)
T cd05064         102 -GQLVAGQLMGMLPGLASGMKYLSE--MGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPE  178 (266)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHH--CCEeeccccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHH
Confidence             358999999999999999999999  77999999999999999999999999976541         233457899999


Q ss_pred             c--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          155 Y--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      +  +..++.          ++++++ |..||......
T Consensus       179 ~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~  215 (266)
T cd05064         179 AIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQ  215 (266)
T ss_pred             HHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHH
Confidence            6  223332          578664 99999876544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.94  E-value=3.1e-26  Score=192.92  Aligned_cols=165  Identities=21%  Similarity=0.239  Sum_probs=130.6

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..++..||||++....   .......+.+|+.+|..+ +||||++++++|.+.+    ..++||||+++|+|.+++....
T Consensus        62 ~~~~~~vavK~l~~~~---~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~----~~~lv~E~~~~g~L~~~l~~~~  134 (375)
T cd05104          62 SDAAMTVAVKMLKPSA---HLTEREALMSELKVLSYLGNHINIVNLLGACTVGG----PTLVITEYCCYGDLLNFLRRKR  134 (375)
T ss_pred             CccceeEEEEeccCCc---CcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCC----cceeeehhccCCcHHHHHHhcc
Confidence            3456789999987432   133456788999999999 8999999999987754    4899999999999999997532


Q ss_pred             c-----------------------------------------------------------------------cCCCCCHH
Q psy238           82 R-----------------------------------------------------------------------NVKKLPLS   90 (218)
Q Consensus        82 ~-----------------------------------------------------------------------~~~~~~~~   90 (218)
                      .                                                                       ....+++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  214 (375)
T cd05104         135 DSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTE  214 (375)
T ss_pred             cccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHH
Confidence            1                                                                       01247888


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccccccC--CC
Q psy238           91 AWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATRQTYG--RP  158 (218)
Q Consensus        91 ~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~aPE~~--~~  158 (218)
                      .++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++...          ...++..|+|||+.  ..
T Consensus       215 ~~~~~~~qi~~~l~~lH~--~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  292 (375)
T cd05104         215 DLLSFSYQVAKGMSFLAS--KNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCV  292 (375)
T ss_pred             HHHHHHHHHHHHHHHHHH--CCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCC
Confidence            899999999999999999  77999999999999999999999999988641          12334679999973  22


Q ss_pred             Cch----------hhhhhh-CCCCCCcch
Q psy238          159 ISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       159 ~~~----------~~ei~t-g~~p~~~~~  176 (218)
                      ++.          +++|++ |..||....
T Consensus       293 ~~~~sDi~slG~~l~ellt~g~~p~~~~~  321 (375)
T cd05104         293 YTFESDVWSYGILLWEIFSLGSSPYPGMP  321 (375)
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence            222          688887 888987653

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.94  E-value=2.9e-26  Score=187.97  Aligned_cols=165  Identities=18%  Similarity=0.238  Sum_probs=133.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..++..||+|.+.....   ......+.+|+.+++.++||||+++++++...+    .+++||||++ ++|.+++....
T Consensus        27 ~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~   98 (309)
T cd07872          27 SKLTENLVALKEIRLEHE---EGAPCTAIREVSLLKDLKHANIVTLHDIVHTDK----SLTLVFEYLD-KDLKQYMDDCG   98 (309)
T ss_pred             ecCCCCeEEEEEeecccc---CCcchhHHHHHHHHHhCCCCCcceEEEEEeeCC----eEEEEEeCCC-CCHHHHHHhcC
Confidence            456788999999875322   222345678999999999999999999987644    5899999996 58988887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..++...+..++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+++.|+||
T Consensus        99 ---~~~~~~~~~~~~~qi~~aL~~lH~--~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  173 (309)
T cd07872          99 ---NIMSMHNVKIFLYQILRGLAYCHR--RKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPP  173 (309)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEECCCCCEEECccccceecCCCccccccccccccccCC
Confidence               348899999999999999999999  7799999999999999999999999998764        234568899999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+..   .++.          +++|++|..||.+....+
T Consensus       174 E~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~  212 (309)
T cd07872         174 DVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVED  212 (309)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH
Confidence            9632   2222          799999999998765443

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.94  E-value=6.9e-26  Score=181.52  Aligned_cols=167  Identities=20%  Similarity=0.246  Sum_probs=136.7

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||.+...... .......+.+|+.+++.++||||+++++++.+.+    ..++||+|+++++|.+++.....
T Consensus        24 ~~~~~~~~iK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~~~~~~~   98 (267)
T cd08228          24 LLDRKPVALKKVQIFEMM-DAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDN----ELNIVLELADAGDLSQMIKYFKK   98 (267)
T ss_pred             eCCCCEEEEEEeeccccC-CHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECC----eEEEEEEecCCCcHHHHHHHhhh
Confidence            457899999988743222 2455567889999999999999999999987643    58999999999999999876543


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                      ....++...++.++.|++.||.|||+  ++++|+||+|+|||++.++.++|+|||++..        ....++..|+|||
T Consensus        99 ~~~~~~~~~~~~~~~~i~~~l~~LH~--~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE  176 (267)
T cd08228          99 QKRLIPERTVWKYFVQLCSAVEHMHS--RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPE  176 (267)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHhh--CCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChh
Confidence            33458899999999999999999999  7799999999999999999999999998764        2356788999999


Q ss_pred             cC--CCCch----------hhhhhhCCCCCCcch
Q psy238          155 YG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ..  ..++.          ++++++|..||....
T Consensus       177 ~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~  210 (267)
T cd08228         177 RIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK  210 (267)
T ss_pred             hhccCCCCchhhHHHHHHHHHHHhcCCCCCcccc
Confidence            73  22222          689999999996543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG0604|consensus

Probab=99.94  E-value=1.2e-27  Score=188.02  Aligned_cols=159  Identities=14%  Similarity=0.098  Sum_probs=133.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..||+.+|+|++..         ...+.+|+++--.. .|||||.++++|.....+...+.+|||+|+||.|.+.++.+
T Consensus        83 ~k~T~ekfALKvL~D---------s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~  153 (400)
T KOG0604|consen   83 HKRTQEKFALKVLLD---------SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDR  153 (400)
T ss_pred             eccchhhhHHHHHhc---------CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHc
Confidence            467888888888752         13456777765554 79999999999988777777888999999999999999998


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe---cCCcEEEeecCcccc-------ccCCCcccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ---HNGLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~---~~~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                      +.  ..+++..+-.++.||+.|+.|||+  .+|.||||||+|+|..   .|..+||+|||++..       .+.+-|+.|
T Consensus       154 g~--~afTErea~eI~~qI~~Av~~lH~--~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyY  229 (400)
T KOG0604|consen  154 GD--QAFTEREASEIMKQIGLAVRYLHS--MNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYY  229 (400)
T ss_pred             cc--ccchHHHHHHHHHHHHHHHHHHHh--cchhhccCChhheeeecCCCCcceEecccccccccCCCccccCCcccccc
Confidence            65  669999999999999999999999  5599999999999995   467899999999976       457789999


Q ss_pred             cccccCC------------CCchhhhhhhCCCCCC
Q psy238          151 TRQTYGR------------PISGQYEIVTKTNNVT  173 (218)
Q Consensus       151 ~aPE~~~------------~~~~~~ei~tg~~p~~  173 (218)
                      .|||+..            ....+|-+++|-.||.
T Consensus       230 vaPevlg~eKydkscdmwSlgVimYIlLCGyPPFY  264 (400)
T KOG0604|consen  230 VAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFY  264 (400)
T ss_pred             cCHHHhCchhcCCCCCccchhHHHHHhhcCCCccc
Confidence            9999722            1122788999999996

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.94  E-value=2.7e-26  Score=188.59  Aligned_cols=163  Identities=17%  Similarity=0.220  Sum_probs=128.3

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|.+....      ....+.+|+.+|+.++||||+++++++....  ...+|+||+|+. ++|.+++.....
T Consensus        25 ~~~~~~~aiK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~~~lv~e~~~-~~l~~~~~~~~~   95 (317)
T cd07868          25 GKDDRDYALKQIEGTG------ISMSACREIALLRELKHPNVISLQKVFLSHA--DRKVWLLFDYAE-HDLWHIIKFHRA   95 (317)
T ss_pred             CCCCceEEEEEECCCC------CcHHHHHHHHHHHhcCCCCCcceeeeEecCC--CcEEEEEEeccC-CCHHHHHHhccc
Confidence            3567899999886421      1234678999999999999999999886533  346899999995 699988764321


Q ss_pred             -----cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE----ecCCcEEEeecCcccc-----------c
Q psy238           83 -----NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI----QHNGLVKIGCDTYTHT-----------I  142 (218)
Q Consensus        83 -----~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl----~~~~~~ki~dfg~~~~-----------~  142 (218)
                           ....+++..++.++.||+.||.|||+  .+|+||||+|+|||+    +.++.++|+|||++..           .
T Consensus        96 ~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~--~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~  173 (317)
T cd07868          96 SKANKKPVQLPRGMVKSLLYQILDGIHYLHA--NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLD  173 (317)
T ss_pred             ccccCCcccCCHHHHHHHHHHHHHHHHHHHh--CCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccC
Confidence                 11248999999999999999999999  779999999999999    4558999999998854           2


Q ss_pred             cCCCcccccccccCC---CCch----------hhhhhhCCCCCCcch
Q psy238          143 ENKKYLSATRQTYGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       143 ~~~~t~~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ...+|+.|+|||+..   .++.          ++++++|..||....
T Consensus       174 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~  220 (317)
T cd07868         174 PVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  220 (317)
T ss_pred             CccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCc
Confidence            356789999999622   1222          689999999997543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=6.9e-26  Score=181.01  Aligned_cols=164  Identities=23%  Similarity=0.287  Sum_probs=134.4

Q ss_pred             CCCCCcEEEEEEeecccccc-cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKN-FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~-~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|.+....... .......+.+|+.+++.++||||+++++++....    .+++||||+++++|.+++...
T Consensus        23 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~~v~e~~~~~~l~~~~~~~   98 (263)
T cd06625          23 DVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDE----TLSIFMEYMPGGSVKDQLKAY   98 (263)
T ss_pred             EcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCC----eEEEEEEECCCCcHHHHHHHh
Confidence            45688999999987542221 1233467888999999999999999999987654    699999999999999998765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~  149 (218)
                          ..++...+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..           ....++..
T Consensus        99 ----~~~~~~~~~~~~~~l~~~l~~lH~--~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~  172 (263)
T cd06625          99 ----GALTETVTRKYTRQILEGVEYLHS--NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPY  172 (263)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCcc
Confidence                348899999999999999999999  6699999999999999999999999998764           12346788


Q ss_pred             ccccccCC--CCch----------hhhhhhCCCCCCcc
Q psy238          150 ATRQTYGR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+|||+..  ..+.          ++++++|..||...
T Consensus       173 y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  210 (263)
T cd06625         173 WMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEF  210 (263)
T ss_pred             ccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCcccc
Confidence            99999732  2212          68999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.94  E-value=3.5e-26  Score=190.12  Aligned_cols=165  Identities=16%  Similarity=0.150  Sum_probs=132.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||.+...  .........+.+|+.+|+.++||||+++++++.....  ....+|++++++ +++|.+++..
T Consensus        36 ~~~~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~  112 (343)
T cd07878          36 DTRLRQKVAVKKLSRP--FQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVKC  112 (343)
T ss_pred             ECCCCCEEEEEEeCch--hhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHhc
Confidence            4578899999998742  1122344567789999999999999999998864321  123578999998 7899988754


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                           ..+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..     ....+|..|+|||
T Consensus       113 -----~~l~~~~~~~i~~qi~~aL~~LH~--~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE  185 (343)
T cd07878         113 -----QKLSDEHVQFLIYQLLRGLKYIHS--AGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPE  185 (343)
T ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHH--CCeecccCChhhEEECCCCCEEEcCCccceecCCCcCCccccccccCch
Confidence                 349999999999999999999999  7799999999999999999999999999875     3456899999999


Q ss_pred             cCC---CCch----------hhhhhhCCCCCCcch
Q psy238          155 YGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +..   .++.          +|+|++|..||.+..
T Consensus       186 ~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  220 (343)
T cd07878         186 IMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGND  220 (343)
T ss_pred             HhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCC
Confidence            732   1221          799999999997654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.94  E-value=9.1e-26  Score=185.07  Aligned_cols=163  Identities=17%  Similarity=0.193  Sum_probs=134.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...   ........+.+|++++..++||||+++++++...+    .+|+||||+++++|.+++... 
T Consensus        22 ~~~~~~~~a~k~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~ey~~~~~L~~~l~~~-   93 (308)
T cd06615          22 HRPSGLIMARKLIHLE---IKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDG----EISICMEHMDGGSLDQVLKKA-   93 (308)
T ss_pred             EcCCCeEEEEEEeccc---cCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC----EEEEEeeccCCCcHHHHHHhc-
Confidence            3567889999988742   22345567889999999999999999999987644    699999999999999999765 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                         ..+++..+..++.|++.||.|||+. .+++|+||+|+|||++.++.++|+|||++..      ....++..|+|||+
T Consensus        94 ---~~~~~~~~~~~~~~i~~~l~~lH~~-~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~  169 (308)
T cd06615          94 ---GRIPENILGKISIAVLRGLTYLREK-HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER  169 (308)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHhh-CCEEECCCChHHEEEecCCcEEEccCCCcccccccccccCCCCcCccChhH
Confidence               3489999999999999999999972 2599999999999999999999999998764      34567899999997


Q ss_pred             C--CCCch----------hhhhhhCCCCCCcch
Q psy238          156 G--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      .  ..++.          ++++++|+.||....
T Consensus       170 ~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~  202 (308)
T cd06615         170 LQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPD  202 (308)
T ss_pred             hcCCCCCccchHHHHHHHHHHHHhCCCCCCCcc
Confidence            3  22222          689999999997543

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.94  E-value=1.2e-25  Score=179.26  Aligned_cols=169  Identities=21%  Similarity=0.326  Sum_probs=139.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++.....  .......+..|+.+++.++||||+++++++....  ...++++|||+++++|.+++....
T Consensus        21 ~~~~~~~~~~k~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~~~~~e~~~~~~L~~~l~~~~   96 (265)
T cd08217          21 RKSDGKILVWKEIDYGNM--TEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRS--NQTLYIVMEYCEGGDLAQLIQKCK   96 (265)
T ss_pred             ecCCCCEEEEEEEecccC--CHHHHHHHHHHHHHHHhcCCCccceeeeeeecCC--CCEEEEEehhccCCCHHHHHHHHh
Confidence            457889999999875422  2455677889999999999999999999876532  346899999999999999998765


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhh-----cCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLH-----SCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYL  148 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH-----~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~  148 (218)
                      .....+++..++.++.|++.||.|||     +  .+++|+||+|+||+++.++.++|+|||++..        ....++.
T Consensus        97 ~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~--~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~  174 (265)
T cd08217          97 KERKYIEEEFIWRILTQLLLALYECHNRSDPG--NTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTP  174 (265)
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHHHhcCcccc--CcceecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCC
Confidence            44466999999999999999999999     7  6799999999999999999999999998775        2346788


Q ss_pred             cccccccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          149 SATRQTYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       149 ~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      .|+|||+..  ..+.          ++++++|..||....
T Consensus       175 ~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  214 (265)
T cd08217         175 YYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN  214 (265)
T ss_pred             CccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC
Confidence            999999732  2211          689999999998655

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.94  E-value=1.3e-25  Score=178.91  Aligned_cols=164  Identities=20%  Similarity=0.316  Sum_probs=135.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...   ......+.+..|+.+++.+.||||+++++++.+..    .+|+||+|+++++|.+++....
T Consensus        21 ~~~~~~~~~iK~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~   93 (255)
T cd08219          21 HVNSDQKYAMKEIRLP---KSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADG----HLYIVMEYCDGGDLMQKIKLQR   93 (255)
T ss_pred             EcCCCceEEEEEEEcC---cchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECC----EEEEEEeeCCCCcHHHHHHhcc
Confidence            4568899999998643   22345567888999999999999999999987643    6999999999999999987643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .  ..++...++.++.|++.||.|||+  ++|+|+||+|+||+++.++.++++|||.+..        ....++..|+||
T Consensus        94 ~--~~~~~~~~~~~~~~i~~al~~lH~--~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aP  169 (255)
T cd08219          94 G--KLFPEDTILQWFVQMCLGVQHIHE--KRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPP  169 (255)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHhh--CCcccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCccccCH
Confidence            2  458899999999999999999999  7799999999999999999999999998865        234578889999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  ..+.          ++++++|..||....
T Consensus       170 E~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~  204 (255)
T cd08219         170 EIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS  204 (255)
T ss_pred             HHHccCCcCchhhhhhhchhheehhhccCCCCCCC
Confidence            9732  2221          688999999997644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.94  E-value=1.3e-25  Score=178.48  Aligned_cols=164  Identities=17%  Similarity=0.200  Sum_probs=131.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...   ........+.+|+.+++.++||||+++++++....    .+++||||+++++|.+++....
T Consensus        16 ~~~~~~~~a~k~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~   88 (252)
T cd05084          16 LRADNTPVAVKSCRET---LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ----PIYIVMELVQGGDFLTFLRTEG   88 (252)
T ss_pred             EecCCceEEEEecCcc---CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCC----CeEEEEeeccCCcHHHHHHhCC
Confidence            4568899999987632   22445567889999999999999999999987644    5899999999999999987532


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccccc----------CCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIE----------NKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~----------~~~t~~y~  151 (218)
                         ..+++..++.++.|++.||.|||+  ++++|+||+|+|||++.++.++|+|||++....          ...+..|+
T Consensus        89 ---~~~~~~~~~~~~~qi~~~L~~lH~--~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~  163 (252)
T cd05084          89 ---PRLKVKELIQMVENAAAGMEYLES--KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWT  163 (252)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeec
Confidence               358899999999999999999999  779999999999999999999999999876411          12235699


Q ss_pred             ccccCC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          152 RQTYGR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       152 aPE~~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      |||+..  ..+.          +|++++ |..||.....
T Consensus       164 aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~  202 (252)
T cd05084         164 APEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN  202 (252)
T ss_pred             CchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH
Confidence            999732  2222          688887 8888876544

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.94  E-value=1.4e-25  Score=179.00  Aligned_cols=163  Identities=15%  Similarity=0.214  Sum_probs=131.8

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|++...  .........+..|+.++..+.||||+++++++...     .+++||+|+++++|.+++...  
T Consensus        19 ~~~~~~~aiK~~~~~--~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~--   89 (257)
T cd05116          19 KKSEKTVAVKILKND--NNDPALKDELLREANVMQQLDNPYIVRMIGICEAE-----SWMLVMELAELGPLNKFLQKN--   89 (257)
T ss_pred             CCCceEEEEEEccCC--CCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-----CcEEEEecCCCCcHHHHHHhc--
Confidence            346788999998743  22345667889999999999999999999987542     378999999999999999754  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------cCCCccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------ENKKYLSAT  151 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------~~~~t~~y~  151 (218)
                        ..+++..+..++.|++.||.|||+  ++|+|+||+|.|||++.++.++|+|||++...           ...++..|+
T Consensus        90 --~~~~~~~~~~i~~qi~~al~~lH~--~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~  165 (257)
T cd05116          90 --KHVTEKNITELVHQVSMGMKYLEE--TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWY  165 (257)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCcccc
Confidence              348999999999999999999999  77999999999999999999999999987641           122347899


Q ss_pred             ccccCC--CCch----------hhhhhh-CCCCCCcchhh
Q psy238          152 RQTYGR--PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       152 aPE~~~--~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      |||+..  ..+.          +|++++ |..||......
T Consensus       166 aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~  205 (257)
T cd05116         166 APECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN  205 (257)
T ss_pred             CHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence            999632  2221          799998 99999765443

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG1989|consensus

Probab=99.94  E-value=2.2e-26  Score=201.80  Aligned_cols=166  Identities=21%  Similarity=0.305  Sum_probs=135.1

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeee-ecC-CCC-CCeEEEEEeccCCCCHHHHHHh
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYW-TDT-HND-KPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~-~~~-~~~-~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ..|..||+|++-.    ........+.+||.+|+.| .|+|||.|++.. ... +.+ ...++|+||||.||+|-+++..
T Consensus        60 ~~~~~~AlKrm~~----~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~  135 (738)
T KOG1989|consen   60 KGGKKYALKRMYV----NDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNT  135 (738)
T ss_pred             CCCceeeeeeeec----CCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHH
Confidence            4458999999874    2467788899999999999 599999999943 222 222 3467899999999999999998


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------------c
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------------I  142 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------------~  142 (218)
                      +..  ..|++..++.|+++++.|+.+||.+..+|||||||-+||||+.++..||||||-+..                 .
T Consensus       136 Rlq--~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI  213 (738)
T KOG1989|consen  136 RLQ--TRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEI  213 (738)
T ss_pred             HHh--ccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHH
Confidence            765  349999999999999999999999767899999999999999999999999998765                 1


Q ss_pred             cCCCccccccccc-----CCCCch----------hhhhhhCCCCCCcc
Q psy238          143 ENKKYLSATRQTY-----GRPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       143 ~~~~t~~y~aPE~-----~~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ...-|+.|.|||.     +.+++.          +|-+.-...||.+.
T Consensus       214 ~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~s  261 (738)
T KOG1989|consen  214 EKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEES  261 (738)
T ss_pred             HhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcC
Confidence            2244899999996     334444          57777788888654

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.94  E-value=8.1e-26  Score=181.05  Aligned_cols=163  Identities=21%  Similarity=0.259  Sum_probs=132.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|.+...     ......+.+|+.++..+.||||+++++++...+    .+++||||+++++|.+++.....
T Consensus        28 ~~~~~~~~~K~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~~   98 (263)
T cd05052          28 KKYSLTVAVKTLKED-----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP----PFYIITEFMTYGNLLDYLRECNR   98 (263)
T ss_pred             ecCCceEEEEEecCC-----chHHHHHHHHHHHHHhCCCCChhheEEEEcCCC----CcEEEEEeCCCCcHHHHHHhCCC
Confidence            456889999988632     223456888999999999999999999987644    58999999999999999976432


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQ  153 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aP  153 (218)
                        ..+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...         ....+..|+||
T Consensus        99 --~~l~~~~~~~~~~ql~~~l~~lH~--~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aP  174 (263)
T cd05052          99 --QEVNAVVLLYMATQISSAMEYLEK--KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP  174 (263)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHh--CCEeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCH
Confidence              358999999999999999999999  77999999999999999999999999987651         12235679999


Q ss_pred             ccC--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          154 TYG--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      |+.  ...+.          ++++++ |..||.+...+
T Consensus       175 E~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~  212 (263)
T cd05052         175 ESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS  212 (263)
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            962  23322          788998 99999765443

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.94  E-value=9.4e-26  Score=182.32  Aligned_cols=158  Identities=16%  Similarity=0.169  Sum_probs=131.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++...   ........+.+|+.++..++||||+++++++....    ..++||||+++++|..+.    
T Consensus        22 ~~~~~~~~aiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~----   90 (279)
T cd06619          22 HLLTRRILAVKVIPLD---ITVELQKQIMSELEILYKCDSPYIIGFYGAFFVEN----RISICTEFMDGGSLDVYR----   90 (279)
T ss_pred             EcCCCcEEEEEEEecC---CChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECC----EEEEEEecCCCCChHHhh----
Confidence            4578899999998742   22445567889999999999999999999987754    589999999999986542    


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                          .+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..      ....++..|+|||+
T Consensus        91 ----~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~  164 (279)
T cd06619          91 ----KIPEHVLGRIAVAVVKGLTYLWS--LKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPER  164 (279)
T ss_pred             ----cCCHHHHHHHHHHHHHHHHHHHH--CCEeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCChhhcCcee
Confidence                37888999999999999999999  7799999999999999999999999998864      34578899999997


Q ss_pred             CC--CCch----------hhhhhhCCCCCCcch
Q psy238          156 GR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       156 ~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ..  .++.          ++++++|..||....
T Consensus       165 ~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~  197 (279)
T cd06619         165 ISGEQYGIHSDVWSLGISFMELALGRFPYPQIQ  197 (279)
T ss_pred             ecCCCCCCcchHHHHHHHHHHHHhCCCCchhhc
Confidence            32  2221          699999999997543

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.94  E-value=9.5e-26  Score=180.71  Aligned_cols=168  Identities=20%  Similarity=0.263  Sum_probs=137.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+...... .......+.+|+.++..+.||||+++++++...+    ..+++|+|+++++|.+++....
T Consensus        23 ~~~~~~~~~vK~~~~~~~~-~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~~~~~~   97 (267)
T cd08229          23 CLLDGVPVALKKVQIFDLM-DAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN----ELNIVLELADAGDLSRMIKHFK   97 (267)
T ss_pred             ecCCCceEEEEeeeehhhh-hHHHHHHHHHHHHHHHHccCCchhhhhheeEeCC----eEEEEEEecCCCCHHHHHHHhh
Confidence            3568899999988743222 2344567889999999999999999999987644    5899999999999999987644


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .....+++..++.++.|++.||.|||+  ++++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        98 ~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ap  175 (267)
T cd08229          98 KQKRLIPEKTVWKYFVQLCSALEHMHS--RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSP  175 (267)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCH
Confidence            334568999999999999999999999  7799999999999999999999999998754        234678899999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcch
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+.  ...+.          ++++++|..||....
T Consensus       176 e~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  210 (267)
T cd08229         176 ERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK  210 (267)
T ss_pred             HHhcCCCccchhhHHHHHHHHHHHHhCCCCccccc
Confidence            973  22222          689999999997543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG0608|consensus

Probab=99.94  E-value=7.5e-27  Score=198.82  Aligned_cols=161  Identities=12%  Similarity=0.159  Sum_probs=131.9

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      ...||.|.+...+ .........+..|-.||..-.++=||+||..|.+.+    .+|+||+|++||++..+|...+.   
T Consensus       654 ~~lYAmKTLrKaD-Vl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkd----nLYFVMdYIPGGDmMSLLIrmgI---  725 (1034)
T KOG0608|consen  654 RALYAMKTLRKAD-VLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKD----NLYFVMDYIPGGDMMSLLIRMGI---  725 (1034)
T ss_pred             hhHHHHhhhHHHH-HHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCC----ceEEEEeccCCccHHHHHHHhcc---
Confidence            3456666555322 222344556677889999999999999999998876    49999999999999999998754   


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------------------
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------------------  141 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------------------  141 (218)
                       |++..++.|+..+..|+++.|.  .|+|||||||+|||||.+|++||+|||+|+.                        
T Consensus       726 -FeE~LARFYIAEltcAiesVHk--mGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~  802 (1034)
T KOG0608|consen  726 -FEEDLARFYIAELTCAIESVHK--MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPS  802 (1034)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHh--ccceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCc
Confidence             9999999999999999999999  6699999999999999999999999998854                        


Q ss_pred             --------------------------ccCCCcccccccccCC--------CCc----hhhhhhhCCCCCCcchh
Q psy238          142 --------------------------IENKKYLSATRQTYGR--------PIS----GQYEIVTKTNNVTEKKK  177 (218)
Q Consensus       142 --------------------------~~~~~t~~y~aPE~~~--------~~~----~~~ei~tg~~p~~~~~~  177 (218)
                                                ...+||..|+|||+..        .|+    .+|||+.|+.||-....
T Consensus       803 ~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp  876 (1034)
T KOG0608|consen  803 PEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTP  876 (1034)
T ss_pred             hhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCC
Confidence                                      2358999999999722        111    18999999999965443

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.94  E-value=2e-25  Score=179.96  Aligned_cols=166  Identities=23%  Similarity=0.267  Sum_probs=134.1

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      .++..||||.+...   ........+.+|+.++..+.||||+++++++....    ..++||+|+++++|.+++..... 
T Consensus        33 ~~~~~vaiK~~~~~---~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~~~~~~  105 (280)
T cd05049          33 NDKELVAVKTLKET---ASNDARKDFEREAELLTNFQHENIVKFYGVCTEGD----PPIMVFEYMEHGDLNKFLRSHGPD  105 (280)
T ss_pred             CCcceEEEEeeccc---CCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCC----CeEEEEecCCCCCHHHHHHhcCCc
Confidence            45688999998742   22335678899999999999999999999987653    58999999999999999976421 


Q ss_pred             ---------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------cc
Q psy238           83 ---------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IE  143 (218)
Q Consensus        83 ---------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~  143 (218)
                               ....+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..          ..
T Consensus       106 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~--~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~  183 (280)
T cd05049         106 AAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS--QHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGH  183 (280)
T ss_pred             hhhhcccccccccccHHHHHHHHHHHHHHHHHHhh--CCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCC
Confidence                     12347889999999999999999999  7799999999999999999999999998763          12


Q ss_pred             CCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          144 NKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       144 ~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      ..+++.|+|||+  +..++.          ++++++ |..||.....+
T Consensus       184 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~  231 (280)
T cd05049         184 TMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNE  231 (280)
T ss_pred             CcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence            234678999997  223332          688998 99999765543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.94  E-value=8.8e-26  Score=184.18  Aligned_cols=160  Identities=19%  Similarity=0.288  Sum_probs=133.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|.+....    ......+.+|+.+++.+.||||+++++.+....    +.|+||+|+++++|.+++... 
T Consensus        41 ~~~~~~~v~ik~~~~~~----~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~-  111 (296)
T cd06654          41 DVATGQEVAIRQMNLQQ----QPKKELIINEILVMRENKNPNIVNYLDSYLVGD----ELWVVMEYLAGGSLTDVVTET-  111 (296)
T ss_pred             ECCCCcEEEEEEEecCC----cchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCC----EEEEeecccCCCCHHHHHHhc-
Confidence            45688999999987432    223466888999999999999999999987643    689999999999999998642 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .++...+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+++.|+||
T Consensus       112 ----~~~~~~~~~i~~ql~~aL~~LH~--~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  185 (296)
T cd06654         112 ----CMDEGQIAAVCRECLQALEFLHS--NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP  185 (296)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccCH
Confidence                37889999999999999999999  7799999999999999999999999998764        234678899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  ..+.          ++++++|..||....
T Consensus       186 E~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~  220 (296)
T cd06654         186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN  220 (296)
T ss_pred             HHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Confidence            9732  2212          799999999997544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.94  E-value=1.2e-25  Score=179.94  Aligned_cols=167  Identities=20%  Similarity=0.273  Sum_probs=136.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+....... ......+.+|+.+++.+.|+||+.+++++...+    ..++||||+++++|.+++....
T Consensus        23 ~~~~~~~~~ik~~~~~~~~~-~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~   97 (267)
T cd08224          23 CLLDGRVVALKKVQIFEMMD-AKARQDCLKEIDLLKQLDHPNVIKYLASFIENN----ELNIVLELADAGDLSRMIKHFK   97 (267)
T ss_pred             EcCCCCEEEEEEeecccccc-hhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCC----eEEEEEecCCCCCHHHHHHHhc
Confidence            34589999999987533222 344677889999999999999999999987653    5899999999999999997654


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .....++...++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~l~~lh~--~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~ap  175 (267)
T cd08224          98 KQKRLIPERTIWKYFVQLCSALEHMHS--KRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSP  175 (267)
T ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHh--CCEecCCcChhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCH
Confidence            333558999999999999999999999  7799999999999999999999999998754        234678889999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcc
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |..  ..++.          ++++++|..||...
T Consensus       176 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  209 (267)
T cd08224         176 ERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             HHhccCCCCchhcHHHHHHHHHHHHHCCCCcccC
Confidence            962  22221          68999999999644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG1026|consensus

Probab=99.94  E-value=2.1e-26  Score=201.53  Aligned_cols=167  Identities=19%  Similarity=0.244  Sum_probs=139.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc--
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR--   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~--   82 (218)
                      +-..||||.++.   .......+.|++|+++|..++|||||+|+|+|....+    +|||||||..|+|..||..+..  
T Consensus       515 ~~~lVAVK~LKd---~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P----~~MvFEYm~~GDL~eFLra~sP~a  587 (774)
T KOG1026|consen  515 DEQLVAVKALKD---KAENQARQDFRREAELLAELQHPNIVRLLGVCREGDP----LCMVFEYMDHGDLHEFLRARSPKA  587 (774)
T ss_pred             cceehhHhhhcc---cccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCe----eEEEEEecccccHHHHHHhhCCcc
Confidence            345699999984   3335578899999999999999999999999988765    8999999999999999987532  


Q ss_pred             ----c----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccC
Q psy238           83 ----N----VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IEN  144 (218)
Q Consensus        83 ----~----~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~  144 (218)
                          .    ..+++..+.+.++.||+.|+.||.+  +.+|||||-++|+||+++..|||+|||+++.          ...
T Consensus       588 ~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~--~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t  665 (774)
T KOG1026|consen  588 DKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSS--HHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNT  665 (774)
T ss_pred             ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh--CcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCc
Confidence                1    2237888999999999999999999  7799999999999999999999999999986          123


Q ss_pred             CCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          145 KKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       145 ~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      .-...|||||-  -..++.          ++||+| |..||.+.+.+|.
T Consensus       666 ~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EV  714 (774)
T KOG1026|consen  666 LLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEV  714 (774)
T ss_pred             eeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHH
Confidence            44689999994  223333          677765 8899998888775

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.94  E-value=2.5e-25  Score=177.20  Aligned_cols=166  Identities=23%  Similarity=0.372  Sum_probs=135.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+....  ........+.+|+.+++.++|||++++++.+....   ..+|+||||+++++|.+++....
T Consensus        21 ~~~~~~~~~~k~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~---~~~~lv~e~~~~~~l~~~l~~~~   95 (257)
T cd08223          21 HRTDGKQYVIKKLNLRN--ASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGED---GLLYIVMGFCEGGDLYHKLKEQK   95 (257)
T ss_pred             EcCCCcEEEEEEEehhh--cCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCC---CEEEEEecccCCCcHHHHHHHhc
Confidence            45678899999987432  22344567888999999999999999998775322   35899999999999999998643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .  ..+++..++.++.|++.||.+||+  .+++|+||+|+||+++.++.++|+|||++..        ....+++.|+||
T Consensus        96 ~--~~l~~~~~~~~~~~l~~~l~~lH~--~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aP  171 (257)
T cd08223          96 G--KLLPENQVVEWFVQIAMALQYLHE--KHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSP  171 (257)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCCcCccCh
Confidence            2  458999999999999999999999  7799999999999999999999999998764        234678899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  .++.          ++++++|..||....
T Consensus       172 E~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~  206 (257)
T cd08223         172 ELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD  206 (257)
T ss_pred             hHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            9732  2222          699999999997654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.94  E-value=1.5e-25  Score=179.73  Aligned_cols=160  Identities=17%  Similarity=0.173  Sum_probs=132.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...    .......+.+|+.++..++||||+++++++...+    .+|+||||+++++|.+++... 
T Consensus        30 ~~~~~~~~~ik~~~~~----~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~-  100 (267)
T cd06645          30 NVNTGELAAIKVIKLE----PGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRD----KLWICMEFCGGGSLQDIYHVT-  100 (267)
T ss_pred             EcCCCcEEEEEEEecC----chhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCC----EEEEEEeccCCCcHHHHHHhc-
Confidence            4567899999998743    1233456778999999999999999999987644    589999999999999998754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....|+..|+||
T Consensus       101 ---~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  175 (267)
T cd06645         101 ---GPLSESQIAYVSRETLQGLYYLHS--KGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAP  175 (267)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEECCCCCEEECcceeeeEccCcccccccccCcccccCh
Confidence               348999999999999999999999  7799999999999999999999999998754        234678999999


Q ss_pred             ccCC-----CCch----------hhhhhhCCCCCCcc
Q psy238          154 TYGR-----PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~~-----~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+..     .++.          ++++++|..||...
T Consensus       176 E~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~  212 (267)
T cd06645         176 EVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             hhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccc
Confidence            9731     1221          68999999998644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.94  E-value=2.1e-25  Score=178.79  Aligned_cols=166  Identities=23%  Similarity=0.259  Sum_probs=134.6

Q ss_pred             CCCCCcEEEEEEeecccc-cccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSER-KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~-~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||.+..... .........+.+|+.+++.+.||||+++++++.+..  ...+++||||+++++|.+++...
T Consensus        23 ~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~~~v~e~~~~~~L~~~l~~~  100 (265)
T cd06652          23 DADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPM--ERTLSIFMEHMPGGSIKDQLKSY  100 (265)
T ss_pred             EcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCC--CceEEEEEEecCCCcHHHHHHHc
Confidence            456899999998864321 122345568889999999999999999999886643  23588999999999999998765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~  149 (218)
                      .    .+++..+..++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..           ....++..
T Consensus       101 ~----~~~~~~~~~~~~~l~~~l~~lH~--~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (265)
T cd06652         101 G----ALTENVTRKYTRQILEGVSYLHS--NMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPY  174 (265)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHh--CCEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCcc
Confidence            3    37889999999999999999999  6799999999999999999999999998753           23457889


Q ss_pred             ccccccC--CCCch----------hhhhhhCCCCCCcc
Q psy238          150 ATRQTYG--RPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~~--~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+|||+.  ..++.          +|++++|..||...
T Consensus       175 y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  212 (265)
T cd06652         175 WMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEF  212 (265)
T ss_pred             ccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCcc
Confidence            9999973  22222          79999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.94  E-value=2e-25  Score=177.78  Aligned_cols=165  Identities=23%  Similarity=0.334  Sum_probs=136.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+....  ........+.+|+.+++.++|+||+++++++.+..    .+++||||+++++|.+++....
T Consensus        21 ~~~~~~~~~~k~~~~~~--~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~----~~~~~~e~~~~~~L~~~~~~~~   94 (256)
T cd08221          21 RTEDDSLVVWKEVNLTR--LSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDN----TLLIEMEYANGGTLYDKIVRQK   94 (256)
T ss_pred             EcCCCcEEEEEEEeecc--cchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCC----eEEEEEEecCCCcHHHHHHhcc
Confidence            35678999999987542  22445567889999999999999999999997643    6899999999999999998653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .  ..++...+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....+++.|+||
T Consensus        95 ~--~~~~~~~~~~~~~~l~~~l~~lh~--~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ap  170 (256)
T cd08221          95 G--QLFEEEMVLWYLFQIVSAVSYIHK--AGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSP  170 (256)
T ss_pred             c--cCCCHHHHHHHHHHHHHHHHHHHh--CCccccCCChHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCH
Confidence            2  458999999999999999999999  6699999999999999999999999998765        235678999999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  .++.          ++++++|..||....
T Consensus       171 e~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~  205 (256)
T cd08221         171 ELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATN  205 (256)
T ss_pred             hhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCC
Confidence            9732  2211          689999999997643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.94  E-value=1.9e-25  Score=183.71  Aligned_cols=159  Identities=16%  Similarity=0.246  Sum_probs=128.9

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      .||+|++..   .........+..|+.+++.+.||||+++++++....     .++|++|+++|+|.+++....   ..+
T Consensus        38 ~vaiK~~~~---~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~-----~~~v~e~~~~g~l~~~l~~~~---~~~  106 (316)
T cd05108          38 PVAIKELRE---ATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-----VQLITQLMPFGCLLDYVREHK---DNI  106 (316)
T ss_pred             eEEEEeccc---cCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCC-----ceeeeecCCCCCHHHHHHhcc---ccC
Confidence            489999863   222445667889999999999999999999987643     689999999999999998643   348


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccccccCC
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATRQTYGR  157 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~aPE~~~  157 (218)
                      +...++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++...          ....+..|+|||+..
T Consensus       107 ~~~~~~~~~~qi~~~L~~LH~--~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~  184 (316)
T cd05108         107 GSQYLLNWCVQIAKGMNYLEE--RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESIL  184 (316)
T ss_pred             CHHHHHHHHHHHHHHHHHHHh--cCeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhc
Confidence            889999999999999999999  77999999999999999999999999998741          122356799999732


Q ss_pred             --CCch----------hhhhhh-CCCCCCcchhhh
Q psy238          158 --PISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       158 --~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                        .++.          +|++++ |..||.+...++
T Consensus       185 ~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~  219 (316)
T cd05108         185 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE  219 (316)
T ss_pred             cCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHH
Confidence              2222          688887 999998755443

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.94  E-value=2.5e-25  Score=177.87  Aligned_cols=161  Identities=19%  Similarity=0.272  Sum_probs=129.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|++...   ........+.+|+.+++.++||||+++++++...     .+++||||+++++|.+++....   
T Consensus        21 ~~~~vavk~~~~~---~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~---   89 (257)
T cd05115          21 KQIDVAIKVLKNE---NEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAE-----ALMLVMEMASGGPLNKFLSGKK---   89 (257)
T ss_pred             CceeEEEEEcccc---cChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCC-----CeEEEEEeCCCCCHHHHHHhCC---
Confidence            4557999998743   2244556788999999999999999999987542     4799999999999999987543   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------cCCCccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------ENKKYLSATRQ  153 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------~~~~t~~y~aP  153 (218)
                      ..+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...           ...++..|+||
T Consensus        90 ~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  167 (257)
T cd05115          90 DEITVSNVVELMHQVSMGMKYLEG--KNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAP  167 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--cCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCH
Confidence            358999999999999999999999  77999999999999999999999999988641           12224689999


Q ss_pred             ccC--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          154 TYG--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      |+.  ..++.          ++++++ |..||......
T Consensus       168 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~  205 (257)
T cd05115         168 ECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGP  205 (257)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHH
Confidence            962  22222          688886 99999766543

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.94  E-value=2.6e-25  Score=179.34  Aligned_cols=166  Identities=16%  Similarity=0.184  Sum_probs=130.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..||||.+...   ........+.+|+.+++.++||||+++++++....    ..++||||+++++|.+++......
T Consensus        34 ~~~~~~aik~~~~~---~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~~~  106 (277)
T cd05062          34 EPETRVAIKTVNEA---ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ----PTLVIMELMTRGDLKSYLRSLRPE  106 (277)
T ss_pred             CceeEEEEEecccc---CCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC----CeEEEEecCCCCCHHHHHHHcCcc
Confidence            34678999988632   22344566889999999999999999999986543    589999999999999999764321


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCc
Q psy238           84 ------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKY  147 (218)
Q Consensus        84 ------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t  147 (218)
                            ...+++..+..++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..          ....++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~--~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  184 (277)
T cd05062         107 MENNPVQAPPSLKKMIQMAGEIADGMAYLNA--NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP  184 (277)
T ss_pred             ccccccccCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccC
Confidence                  1235778899999999999999999  7799999999999999999999999998753          123446


Q ss_pred             ccccccccC--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          148 LSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       148 ~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      ..|+|||+.  ..++.          ++++++ |..||.+...+
T Consensus       185 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~  228 (277)
T cd05062         185 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNE  228 (277)
T ss_pred             HhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            789999973  22222          688888 78898766543

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=2.1e-25  Score=180.96  Aligned_cols=168  Identities=19%  Similarity=0.209  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..||+|.+...   ........+.+|+++++.++||||++++++|.+..  ...+|+||||+++++|.+++....
T Consensus        22 ~~~~~~~~~~k~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~   96 (287)
T cd06621          22 LKNTGMIFALKTITTD---PNPDLQKQILRELEINKSCKSPYIVKYYGAFLDES--SSSIGIAMEYCEGGSLDSIYKKVK   96 (287)
T ss_pred             ECCCCeEEEEEEEecC---CchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccC--CCeEEEEEEecCCCCHHHHHHHHH
Confidence            3457889999998743   22345677899999999999999999999886643  246899999999999999877544


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                      .....++...+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..      ....++..|+|||.
T Consensus        97 ~~~~~l~~~~~~~i~~~i~~~L~~lH~--~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~  174 (287)
T cd06621          97 KRGGRIGEKVLGKIAESVLKGLSYLHS--RKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPER  174 (287)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEEecCCeEEEeeccccccccccccccccCCccccCHHH
Confidence            334568999999999999999999999  7799999999999999999999999998764      23456889999996


Q ss_pred             C--CCCch----------hhhhhhCCCCCCcch
Q psy238          156 G--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      .  ..++.          +|++++|..||....
T Consensus       175 ~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  207 (287)
T cd06621         175 IQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEG  207 (287)
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhCCCCCCccc
Confidence            2  22222          699999999998663

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.94  E-value=9.9e-26  Score=182.60  Aligned_cols=169  Identities=18%  Similarity=0.254  Sum_probs=129.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhc---CCCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQ---LEHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~---l~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +..+|..||+|.+......  ......+.+|+.++..   +.||||+++++++..... ....+++||++++ ++|.+++
T Consensus        21 ~~~~~~~~aiK~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~   97 (288)
T cd07863          21 DPHSGHFVALKSVRVQTNE--DGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVD-QDLRTYL   97 (288)
T ss_pred             ECCCCcEEEEEEeccCcCC--CCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEEEcccc-cCHHHHH
Confidence            5678999999998753211  1112234456665554   479999999998865322 2356899999996 5999988


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccc
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                      .....  ..+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..       ....++..|
T Consensus        98 ~~~~~--~~~~~~~~~~~~~qi~~al~~lH~--~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y  173 (288)
T cd07863          98 DKVPP--PGLPAETIKDLMRQFLRGLDFLHA--NCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWY  173 (288)
T ss_pred             HhcCC--CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEECCCCCEEECccCccccccCcccCCCccccccc
Confidence            76532  348999999999999999999999  7799999999999999999999999998864       234578899


Q ss_pred             cccccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          151 TRQTYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +|||+.  ..++.          +|++++|..||.....
T Consensus       174 ~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~  212 (288)
T cd07863         174 RAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE  212 (288)
T ss_pred             cCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCH
Confidence            999963  22222          7899999999976544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.94  E-value=1.2e-25  Score=183.55  Aligned_cols=161  Identities=20%  Similarity=0.301  Sum_probs=134.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||.+...    .......+.+|+.+++.++||||+.+++++....    .+|+|+||+++++|..++... 
T Consensus        40 ~~~~~~~v~iK~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~-  110 (296)
T cd06655          40 DVATGQEVAIKQINLQ----KQPKKELIINEILVMKELKNPNIVNFLDSFLVGD----ELFVVMEYLAGGSLTDVVTET-  110 (296)
T ss_pred             EcCCCcEEEEEEEecc----cCchHHHHHHHHHHHHhcCCCceeeeeeeEecCc----eEEEEEEecCCCcHHHHHHhc-
Confidence            5678999999998743    1233467889999999999999999999987643    689999999999999988642 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus       111 ----~l~~~~~~~i~~~l~~al~~LH~--~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  184 (296)
T cd06655         111 ----CMDEAQIAAVCRECLQALEFLHA--NQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP  184 (296)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCc
Confidence                38999999999999999999999  7799999999999999999999999998764        234678899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |...  .++.          ++++++|..||.....
T Consensus       185 E~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~  220 (296)
T cd06655         185 EVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP  220 (296)
T ss_pred             chhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9622  2222          6899999999976544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.94  E-value=2e-25  Score=185.46  Aligned_cols=165  Identities=17%  Similarity=0.223  Sum_probs=131.2

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .+++.||+|++...   ........+..|+.++..+ +||||++++++|...+   ..++++|+|+++++|.+++.....
T Consensus        35 ~~~~~va~K~~~~~---~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~---~~~~~v~ey~~~~~L~~~i~~~~~  108 (337)
T cd05054          35 ASCRTVAVKMLKEG---ATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG---GPLMVIVEYCKFGNLSNYLRSKRE  108 (337)
T ss_pred             cccceeeeeeccCC---CCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC---CCEEEEEecCCCCCHHHHHHhccc
Confidence            46789999998742   1233446678899999999 8999999999886543   368999999999999999865321


Q ss_pred             c---------------------------------------------------------CCCCCHHHHHHHHHHHHHHHHH
Q psy238           83 N---------------------------------------------------------VKKLPLSAWKRWCSQILSALSY  105 (218)
Q Consensus        83 ~---------------------------------------------------------~~~~~~~~~~~~~~qi~~~l~~  105 (218)
                      .                                                         ..++++..+..++.||+.||.|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~  188 (337)
T cd05054         109 CFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEF  188 (337)
T ss_pred             cccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            1                                                         1258899999999999999999


Q ss_pred             hhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc--CCCCch----------hh
Q psy238          106 LHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY--GRPISG----------QY  163 (218)
Q Consensus       106 lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~--~~~~~~----------~~  163 (218)
                      ||+  .+|+||||+|+|||++.++.++|+|||++..          ....++..|+|||+  +..++.          ++
T Consensus       189 lH~--~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~  266 (337)
T cd05054         189 LAS--RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLW  266 (337)
T ss_pred             HHh--CCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHH
Confidence            999  7799999999999999999999999998864          12344678999996  233332          68


Q ss_pred             hhhh-CCCCCCcch
Q psy238          164 EIVT-KTNNVTEKK  176 (218)
Q Consensus       164 ei~t-g~~p~~~~~  176 (218)
                      ++++ |..||.+..
T Consensus       267 el~t~g~~p~~~~~  280 (337)
T cd05054         267 EIFSLGASPYPGVQ  280 (337)
T ss_pred             HHHHcCCCCCCCCC
Confidence            8887 999997643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.94  E-value=2.2e-25  Score=179.01  Aligned_cols=164  Identities=18%  Similarity=0.221  Sum_probs=127.9

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN-   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-   83 (218)
                      ....+|+|.+...   ........+.+|+.+++.++||||+++++.+....    .+|+||||+++++|.+++...... 
T Consensus        21 ~~~~~~~k~~~~~---~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~~~~   93 (269)
T cd05042          21 SKARVVVKELRAS---ATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESI----PYLLVLEFCPLGDLKNYLRSNRGMV   93 (269)
T ss_pred             CCeEEEEeecCcc---CChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCC----ceEEEEEeCCCCcHHHHHHhccccc
Confidence            3456888877532   22444567888999999999999999999987654    589999999999999999875421 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQ  153 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aP  153 (218)
                      ...+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....++..|+||
T Consensus        94 ~~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  171 (269)
T cd05042          94 AQMAQKDVLQRMACEVASGLLWLHQ--ADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAP  171 (269)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHh--cCEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCH
Confidence            1235678889999999999999999  7799999999999999999999999998754          122345679999


Q ss_pred             ccCC---------CCch----------hhhhhh-CCCCCCcchh
Q psy238          154 TYGR---------PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       154 E~~~---------~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      |+..         ..+.          ++++++ |..||.....
T Consensus       172 E~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~  215 (269)
T cd05042         172 ELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSD  215 (269)
T ss_pred             HHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCH
Confidence            9621         1111          688888 7888876543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.7e-25  Score=180.64  Aligned_cols=161  Identities=20%  Similarity=0.249  Sum_probs=134.6

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|++...    .......+..|+.+++.++||||+++++++....    .+|+||||+++++|.+++.... 
T Consensus        27 ~~~~~~~~iK~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~-   97 (280)
T cd06611          27 KETGLFAAAKIIQIE----SEEELEDFMVEIDILSECKHPNIVGLYEAYFYEN----KLWILIEFCDGGALDSIMLELE-   97 (280)
T ss_pred             cCCCcEEEEEEEeeC----CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCC----eEEEEeeccCCCcHHHHHHHhc-
Confidence            357889999999742    3445577889999999999999999999987643    5899999999999999987643 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                        ..+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..        ....+++.|+|||
T Consensus        98 --~~l~~~~~~~~~~ql~~~l~~lh~--~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE  173 (280)
T cd06611          98 --RGLTEPQIRYVCRQMLEALNFLHS--HKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPE  173 (280)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCChhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHH
Confidence              358999999999999999999999  7799999999999999999999999998754        2345788999999


Q ss_pred             cCC-------CCch----------hhhhhhCCCCCCcch
Q psy238          155 YGR-------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~~~-------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +..       +++.          ++++++|..||....
T Consensus       174 ~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~  212 (280)
T cd06611         174 VVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELN  212 (280)
T ss_pred             HHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCC
Confidence            621       1211          689999999997654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.94  E-value=3e-25  Score=180.14  Aligned_cols=164  Identities=23%  Similarity=0.269  Sum_probs=132.2

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      .++..||+|.+..    ........+.+|+.++..+.||||+++++++...+    .+++||||+++++|.+++..... 
T Consensus        33 ~~~~~~~ik~~~~----~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~~~~~~  104 (288)
T cd05093          33 QDKILVAVKTLKD----ASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD----PLIMVFEYMKHGDLNKFLRAHGPD  104 (288)
T ss_pred             CcceEEEEEecCC----cCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC----ccEEEEEcCCCCCHHHHHHHcCCc
Confidence            4556799998863    22445667899999999999999999999987643    58999999999999999975431 


Q ss_pred             --------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccC
Q psy238           83 --------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IEN  144 (218)
Q Consensus        83 --------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~  144 (218)
                              ....+++..++.++.|++.||.|||+  .+++||||+|+|||++.++.++|+|||++..          ...
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~--~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  182 (288)
T cd05093         105 AVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLAS--QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHT  182 (288)
T ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh--CCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCC
Confidence                    12348999999999999999999999  7799999999999999999999999998863          122


Q ss_pred             CCcccccccccC--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          145 KKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       145 ~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      .+++.|+|||+.  ..++.          ++++++ |..||.....
T Consensus       183 ~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~  228 (288)
T cd05093         183 MLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN  228 (288)
T ss_pred             CccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            336789999963  22222          689998 8999876554

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.94  E-value=1.9e-25  Score=189.44  Aligned_cols=163  Identities=16%  Similarity=0.181  Sum_probs=129.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      ++..||||++...   ......+.+.+|+.+|..+. ||||+++++++...+    .+|+||||+++|+|.+++..... 
T Consensus        66 ~~~~vavK~l~~~---~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~----~~~lv~Ey~~~g~L~~~l~~~~~~  138 (400)
T cd05105          66 PVMKVAVKMLKPT---ARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSG----PIYIITEYCFYGDLVNYLHKNRDN  138 (400)
T ss_pred             CceEEEEEecCCC---CChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCC----ceEEEEEecCCCcHHHHHHHhhhh
Confidence            3457999999743   22345567899999999995 999999999997644    58999999999999999875421 


Q ss_pred             --------------------------------------------------------------------------------
Q psy238           83 --------------------------------------------------------------------------------   82 (218)
Q Consensus        83 --------------------------------------------------------------------------------   82 (218)
                                                                                                      
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (400)
T cd05105         139 FLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSN  218 (400)
T ss_pred             hhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcc
Confidence                                                                                            


Q ss_pred             -----------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------
Q psy238           83 -----------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------  141 (218)
Q Consensus        83 -----------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------  141 (218)
                                 ....+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..          
T Consensus       219 ~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~--~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~  296 (400)
T cd05105         219 DSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLAS--KNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSK  296 (400)
T ss_pred             hhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh--CCeeCCCCChHhEEEeCCCEEEEEeCCcceecccccccccc
Confidence                       01247788889999999999999999  7799999999999999999999999998764          


Q ss_pred             ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcch
Q psy238          142 IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~  176 (218)
                      ....++..|+|||+.  ..++.          +++|++ |..||....
T Consensus       297 ~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~  344 (400)
T cd05105         297 GSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMI  344 (400)
T ss_pred             CCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccc
Confidence            123456789999963  22222          688886 999997653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=3.5e-25  Score=176.68  Aligned_cols=164  Identities=21%  Similarity=0.260  Sum_probs=135.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..+|+|.+....    ......+.+|+.+++.++||||+++++++.+..    .+|++|||+++++|.+++....
T Consensus        24 ~~~~~~~~~ik~~~~~~----~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~----~~~l~~e~~~~~~l~~~~~~~~   95 (262)
T cd06613          24 DIATGELVAIKVIKLEP----GDDFEIIQQEISMLKECRHPNIVAYFGSYLRRD----KLWIVMEYCGGGSLQDIYQVTR   95 (262)
T ss_pred             ecCCCCEEEEEEEEcCc----hhhHHHHHHHHHHHHhCCCCChhceEEEEEeCC----EEEEEEeCCCCCcHHHHHHhhc
Confidence            34577889999998532    235577889999999999999999999887643    6899999999999999987642


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        96 ---~~l~~~~~~~~~~ql~~~l~~lh~--~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~P  170 (262)
T cd06613          96 ---GPLSELQIAYVCRETLKGLAYLHE--TGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAP  170 (262)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHh--CCceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCc
Confidence               348999999999999999999999  7799999999999999999999999998764        234667889999


Q ss_pred             ccCC-----CCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYGR-----PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~~-----~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+..     .++.          +++|++|..||......
T Consensus       171 e~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~  210 (262)
T cd06613         171 EVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPM  210 (262)
T ss_pred             hhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHH
Confidence            9732     2221          79999999999865543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.94  E-value=9.8e-26  Score=182.26  Aligned_cols=165  Identities=19%  Similarity=0.259  Sum_probs=133.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+.....  .......+.+|+.++..+.||||+++++++.+..    .+|+||+|++ ++|.+++....
T Consensus        21 ~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~-~~l~~~~~~~~   93 (285)
T cd07861          21 NKKTGQIVAMKKIRLESE--EEGVPSTAIREISLLKELQHPNIVCLQDVLMQES----RLYLIFEFLS-MDLKKYLDSLP   93 (285)
T ss_pred             ECCCCcEEEEEEeccccc--cCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCC----eEEEEEecCC-CCHHHHHhcCC
Confidence            356789999999875321  1223456788999999999999999999987643    6899999996 68998887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      . ...+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..        ....+++.|+||
T Consensus        94 ~-~~~~~~~~~~~~~~qi~~~L~~lH~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  170 (285)
T cd07861          94 K-GQYMDAELVKSYLYQILQGILFCHS--RRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAP  170 (285)
T ss_pred             C-CCcCCHHHHHHHHHHHHHHHHHHHh--CCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccCh
Confidence            2 2458999999999999999999999  7799999999999999999999999998764        234568899999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..   .++.          +++++||+.||.+..
T Consensus       171 E~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~  206 (285)
T cd07861         171 EVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDS  206 (285)
T ss_pred             HHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            9632   2222          799999999997654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.94  E-value=9.8e-26  Score=184.10  Aligned_cols=164  Identities=20%  Similarity=0.248  Sum_probs=133.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+.....   ......+.+|+.++..++||||+++++++....    .+++||||++ ++|.+++....
T Consensus        27 ~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~----~~~lv~e~~~-~~l~~~l~~~~   98 (301)
T cd07873          27 SKLTDNLVALKEIRLEHE---EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK----SLTLVFEYLD-KDLKQYLDDCG   98 (301)
T ss_pred             EcCCCcEEEEEEEecccc---cCchhHHHHHHHHHHhcCCCCcceEEEEEecCC----eEEEEEeccc-cCHHHHHHhcC
Confidence            456789999999875322   222345678999999999999999999987643    5899999996 69999887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....++..|+||
T Consensus        99 ---~~~~~~~~~~~~~qi~~aL~~lH~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~P  173 (301)
T cd07873          99 ---NSINMHNVKLFLFQLLRGLNYCHR--RKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPP  173 (301)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCc
Confidence               348899999999999999999999  7799999999999999999999999998864        234568899999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+..   .++.          +++|++|..||.....+
T Consensus       174 E~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~  211 (301)
T cd07873         174 DILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVE  211 (301)
T ss_pred             HHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            9632   1221          79999999999866543

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG2345|consensus

Probab=99.94  E-value=3.5e-26  Score=175.42  Aligned_cols=168  Identities=15%  Similarity=0.169  Sum_probs=142.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..++..||+|.+...    .....+..++|++..+.++|||+++++++...... +....|++++|...|||.+.+...
T Consensus        42 ~~s~~~~YAlKkI~c~----~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~  117 (302)
T KOG2345|consen   42 GLSTGHLYALKKILCH----SQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERL  117 (302)
T ss_pred             ccCcccchhhheeecc----chHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHH
Confidence            3568899999999853    35677889999999999999999999888765433 344689999999999999999998


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------------cc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------------IE  143 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------------~~  143 (218)
                      ...+..+++..++.|+.+|+.||.+||+...++.||||||.|||+++++.+.|.|||.++.                 ..
T Consensus       118 k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~  197 (302)
T KOG2345|consen  118 KIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAE  197 (302)
T ss_pred             hhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHH
Confidence            8777789999999999999999999999334499999999999999999999999998765                 34


Q ss_pred             CCCcccccccccCC-----CCch----------hhhhhhCCCCCC
Q psy238          144 NKKYLSATRQTYGR-----PISG----------QYEIVTKTNNVT  173 (218)
Q Consensus       144 ~~~t~~y~aPE~~~-----~~~~----------~~ei~tg~~p~~  173 (218)
                      ...|..|.|||+..     ..+.          +|.|+-|..||+
T Consensus       198 e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe  242 (302)
T KOG2345|consen  198 ERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFE  242 (302)
T ss_pred             HhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcch
Confidence            67799999999732     2211          799999999996

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.94  E-value=2.8e-25  Score=179.77  Aligned_cols=161  Identities=23%  Similarity=0.328  Sum_probs=130.7

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||+|++...   ........+.+|+.+++.++||||+++++++....  ...+++||||+++++|.+++...   
T Consensus        31 ~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~---  102 (283)
T cd05080          31 GTGEMVAVKTLKRE---CGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQG--GKGLQLIMEYVPLGSLRDYLPKH---  102 (283)
T ss_pred             CCCceEEEEEeccc---cChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--CceEEEEecCCCCCCHHHHHHHc---
Confidence            46789999998743   22345567888999999999999999999876532  23589999999999999999653   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------cCCCcccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------ENKKYLSATR  152 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------~~~~t~~y~a  152 (218)
                        .+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++...           ...++..|+|
T Consensus       103 --~l~~~~~~~i~~~l~~~l~~lH~--~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (283)
T cd05080         103 --KLNLAQLLLFAQQICEGMAYLHS--QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA  178 (283)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHH--CCeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeC
Confidence              38999999999999999999999  77999999999999999999999999987641           1234566999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||...  ..+.          ++++++|..|+....
T Consensus       179 PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~  214 (283)
T cd05080         179 VECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPP  214 (283)
T ss_pred             HhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCc
Confidence            99632  1111          799999999986543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.94  E-value=3.5e-25  Score=178.97  Aligned_cols=166  Identities=19%  Similarity=0.224  Sum_probs=133.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN-   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-   83 (218)
                      ++..||+|.+...   ........+.+|+.++..++||||+++++++....    ..|++|||+++++|.+++...... 
T Consensus        34 ~~~~v~~K~~~~~---~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~----~~~~~~e~~~~~~L~~~l~~~~~~~  106 (283)
T cd05048          34 SATSVAIKTLKEN---AEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQ----PTCMLFEYLAHGDLHEFLVRNSPHS  106 (283)
T ss_pred             ceeeEEEEecccC---CCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCC----ceEEEEecCCCCcHHHHHHhcCCCc
Confidence            3467999988742   22445567889999999999999999999987644    489999999999999999764211 


Q ss_pred             -----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------c
Q psy238           84 -----------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------I  142 (218)
Q Consensus        84 -----------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~  142 (218)
                                 ...+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..          .
T Consensus       107 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~--~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~  184 (283)
T cd05048         107 DVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSS--HHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQS  184 (283)
T ss_pred             ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh--CCeeccccccceEEEcCCCcEEECCCcceeeccccccccccC
Confidence                       1347889999999999999999999  7799999999999999999999999998754          2


Q ss_pred             cCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          143 ENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       143 ~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ...+++.|+|||+.  ..++.          +|++++ |..||.+...++
T Consensus       185 ~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~  234 (283)
T cd05048         185 KSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQE  234 (283)
T ss_pred             CCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHH
Confidence            23456789999963  22222          688998 999998765543

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.94  E-value=3.9e-25  Score=179.71  Aligned_cols=164  Identities=26%  Similarity=0.279  Sum_probs=132.0

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      .++..||+|.+..    ........+.+|+.+++.++||||+++++++....    ..++||||+++++|.+++..... 
T Consensus        33 ~~~~~~~~k~~~~----~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~~~~~~  104 (291)
T cd05094          33 KDKMLVAVKALKD----PTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD----PLIMVFEYMKHGDLNKFLRAHGPD  104 (291)
T ss_pred             CcceeeEEEecCC----ccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC----ceEEEEecCCCCcHHHHHHhcCcc
Confidence            4556788988763    33445567889999999999999999999987643    58999999999999999976431 


Q ss_pred             -----------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------
Q psy238           83 -----------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------  141 (218)
Q Consensus        83 -----------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------  141 (218)
                                 ....+++..++.++.||+.||.|||+  ++|+|+||+|+|||++.++.++|+|||++..          
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~--~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~  182 (291)
T cd05094         105 AMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLAS--QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVG  182 (291)
T ss_pred             cccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHh--CCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecC
Confidence                       11347899999999999999999999  7799999999999999999999999998753          


Q ss_pred             ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          142 IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      ....++..|+|||+.  ..++.          +++++| |..||.....
T Consensus       183 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  231 (291)
T cd05094         183 GHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSN  231 (291)
T ss_pred             CCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            223446789999962  22222          689998 9999876544

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.94  E-value=1.2e-25  Score=184.65  Aligned_cols=163  Identities=18%  Similarity=0.225  Sum_probs=127.7

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|.+....      ....+.+|+.+++.++||||+++++++....  ...+++||+|+. ++|.+++.....
T Consensus        25 ~~~~~~~a~k~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~~~lv~e~~~-~~l~~~~~~~~~   95 (317)
T cd07867          25 GKDEKEYALKQIEGTG------ISMSACREIALLRELKHPNVIALQKVFLSHS--DRKVWLLFDYAE-HDLWHIIKFHRA   95 (317)
T ss_pred             CCccceEEEEEecCCC------CcHHHHHHHHHHHhCCCCCeeeEEEEEeccC--CCeEEEEEeeeC-CcHHHHHHhhhc
Confidence            3467889999886321      1235678999999999999999999886533  346899999995 688888764321


Q ss_pred             -----cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE----ecCCcEEEeecCcccc-----------c
Q psy238           83 -----NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI----QHNGLVKIGCDTYTHT-----------I  142 (218)
Q Consensus        83 -----~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl----~~~~~~ki~dfg~~~~-----------~  142 (218)
                           ....+++..++.++.|++.||.|||+  .+|+||||+|+|||+    +.++.++|+|||++..           .
T Consensus        96 ~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~--~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~  173 (317)
T cd07867          96 SKANKKPMQLPRSMVKSLLYQILDGIHYLHA--NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLD  173 (317)
T ss_pred             cccCCCCccCCHHHHHHHHHHHHHHHHHHHh--CCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccC
Confidence                 12348899999999999999999999  779999999999999    4568999999999864           2


Q ss_pred             cCCCcccccccccCC---CCch----------hhhhhhCCCCCCcch
Q psy238          143 ENKKYLSATRQTYGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       143 ~~~~t~~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ...+|+.|+|||+..   .++.          +++|+||..||....
T Consensus       174 ~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~  220 (317)
T cd07867         174 PVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  220 (317)
T ss_pred             cceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccccc
Confidence            346688999999632   2222          699999999997544

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.94  E-value=1.7e-25  Score=179.31  Aligned_cols=160  Identities=18%  Similarity=0.186  Sum_probs=131.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....    ......+.+|+.++..+.||||+++++++....    .+++||||+++++|.+++... 
T Consensus        30 ~~~~~~~~aik~~~~~~----~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~----~~~iv~e~~~~~~L~~~~~~~-  100 (267)
T cd06646          30 NLHTGELAAVKIIKLEP----GDDFSLIQQEIFMVKECKHCNIVAYFGSYLSRE----KLWICMEYCGGGSLQDIYHVT-  100 (267)
T ss_pred             ECCCCeEEEEEEEecCc----cchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCC----EEEEEEeCCCCCcHHHHHHhc-
Confidence            35678899999997431    223346788999999999999999999987643    589999999999999998754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus       101 ---~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~P  175 (267)
T cd06646         101 ---GPLSELQIAYVCRETLQGLAYLHS--KGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAP  175 (267)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCCCHHHEEECCCCCEEECcCccceeecccccccCccccCccccCH
Confidence               348999999999999999999999  7799999999999999999999999998764        234577899999


Q ss_pred             ccCC-----CCch----------hhhhhhCCCCCCcc
Q psy238          154 TYGR-----PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~~-----~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |...     .++.          ++++++|..||...
T Consensus       176 E~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~  212 (267)
T cd06646         176 EVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             hHcccccCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence            9631     1111          78999999999644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.94  E-value=3.5e-25  Score=179.05  Aligned_cols=162  Identities=20%  Similarity=0.231  Sum_probs=133.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..+|+|.+...    .......+.+|+.+++.+.||||+++++++....    ..++||||+++++|..++....
T Consensus        26 ~~~~~~~~~~k~~~~~----~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~----~~~~v~e~~~~~~l~~~~~~~~   97 (282)
T cd06643          26 NKETGVLAAAKVIDTK----SEEELEDYMVEIDILASCDHPNIVKLLDAFYYEN----NLWILIEFCAGGAVDAVMLELE   97 (282)
T ss_pred             ECCCCeEEEEEEeCCC----CHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCC----EEEEEEEecCCCcHHHHHHhcC
Confidence            3457888999988632    2445567888999999999999999999987643    6899999999999998876532


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         .++++..+..++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..        ....++..|+||
T Consensus        98 ---~~l~~~~~~~~~~qi~~~L~~LH~--~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  172 (282)
T cd06643          98 ---RPLTEPQIRVVCKQTLEALNYLHE--NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAP  172 (282)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeecCCCcccEEEccCCCEEEccccccccccccccccccccccccccCH
Confidence               358999999999999999999999  7799999999999999999999999998754        234678999999


Q ss_pred             ccCC-------CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR-------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~-------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..       .++.          ++++++|..||....
T Consensus       173 E~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~  212 (282)
T cd06643         173 EVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELN  212 (282)
T ss_pred             hhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccC
Confidence            9631       1111          689999999997654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.93  E-value=1.7e-25  Score=182.62  Aligned_cols=159  Identities=20%  Similarity=0.295  Sum_probs=132.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+....    ......+.+|+.+++.++||||+++++++....    .+|+||+|+++++|.+++... 
T Consensus        40 ~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~-  110 (297)
T cd06656          40 DIATGQEVAIKQMNLQQ----QPKKELIINEILVMRENKNPNIVNYLDSYLVGD----ELWVVMEYLAGGSLTDVVTET-  110 (297)
T ss_pred             ECCCCCEEEEEEEecCc----cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCC----EEEEeecccCCCCHHHHHHhC-
Confidence            45789999999997432    233466788999999999999999999987643    689999999999999998652 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .+++..+..++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..        ....+++.|+||
T Consensus       111 ----~~~~~~~~~~~~~l~~~L~~LH~--~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  184 (297)
T cd06656         111 ----CMDEGQIAAVCRECLQALDFLHS--NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP  184 (297)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCH
Confidence                37889999999999999999999  7799999999999999999999999998764        234678899999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcc
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |..  ..++.          ++++++|..||...
T Consensus       185 E~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~  218 (297)
T cd06656         185 EVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (297)
T ss_pred             HHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            972  22222          68999999999654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.93  E-value=8.6e-26  Score=191.24  Aligned_cols=155  Identities=19%  Similarity=0.242  Sum_probs=127.4

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|.+...         ....+|+.+|..++||||+++++++....    .+|+||+++. ++|..++...  
T Consensus       116 ~~~~~~v~vK~~~~~---------~~~~~E~~il~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~l~~~--  179 (392)
T PHA03207        116 DEQRKKVIVKAVTGG---------KTPGREIDILKTISHRAIINLIHAYRWKS----TVCMVMPKYK-CDLFTYVDRS--  179 (392)
T ss_pred             CccceeEEEEecccc---------ccHHHHHHHHHhcCCCCccceeeeEeeCC----EEEEEehhcC-CCHHHHHHhc--
Confidence            345678999987632         13457999999999999999999887543    6899999995 7899988543  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATR  152 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~a  152 (218)
                        ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....||+.|+|
T Consensus       180 --~~l~~~~~~~i~~ql~~aL~~LH~--~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~a  255 (392)
T PHA03207        180 --GPLPLEQAITIQRRLLEALAYLHG--RGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNS  255 (392)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccC
Confidence              459999999999999999999999  7799999999999999999999999998754          23468999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+..  .++.          +|+|++|+.||.+...
T Consensus       256 PE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~  292 (392)
T PHA03207        256 PELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQV  292 (392)
T ss_pred             HhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCC
Confidence            99732  2222          7999999999976543

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.93  E-value=1.2e-25  Score=180.02  Aligned_cols=166  Identities=28%  Similarity=0.386  Sum_probs=132.5

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ...+..|+||++..   .........+.+|++++..++||||+++++++....    .+++||||+++|+|.+++.....
T Consensus        25 ~~~~~~V~vk~~~~---~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~----~~~lv~e~~~~g~L~~~L~~~~~   97 (259)
T PF07714_consen   25 NDKNQPVAVKILKP---SSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENE----PLFLVMEYCPGGSLDDYLKSKNK   97 (259)
T ss_dssp             TSSEEEEEEEEEST---TSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSS----SEEEEEE--TTEBHHHHHHHTCT
T ss_pred             CCCCEEEEEEEecc---ccccccceeeeecccccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence            45577899999963   233445788999999999999999999999998543    38999999999999999998722


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATR  152 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~a  152 (218)
                        ..+++..++.|+.||+.||.|||+  .+++|++|+|+|||++.++.++|+|||++...          .......|+|
T Consensus        98 --~~~~~~~~~~i~~~i~~~l~~Lh~--~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~a  173 (259)
T PF07714_consen   98 --EPLSEQQRLSIAIQIAEALSYLHS--NNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLA  173 (259)
T ss_dssp             --TTSBHHHHHHHHHHHHHHHHHHHH--TTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-
T ss_pred             --cccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              458999999999999999999999  77999999999999999999999999988652          2456788999


Q ss_pred             cccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          153 QTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ||+.  ..++.          ++||++ |..||.....++
T Consensus       174 PE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~  213 (259)
T PF07714_consen  174 PEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEE  213 (259)
T ss_dssp             HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccc
Confidence            9973  22222          799999 789987765444

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG4645|consensus

Probab=99.93  E-value=1.4e-27  Score=215.87  Aligned_cols=165  Identities=20%  Similarity=0.264  Sum_probs=138.4

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      ++..||...|+|-+......  ......+.+|..++..++|||+|+++|+=.+..    .+++.||||.+|+|.+++...
T Consensus      1255 vN~~tGellAvKEI~iq~~~--~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRe----kv~IFMEyC~~GsLa~ll~~g 1328 (1509)
T KOG4645|consen 1255 VNLDTGELLAVKEIKIQDSD--HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHRE----KVYIFMEYCEGGSLASLLEHG 1328 (1509)
T ss_pred             ecCCccchhhhhhhhcCccc--cccCcchHHHHHHHHhccCccccccCceeecHH----HHHHHHHHhccCcHHHHHHhc
Confidence            57889999999998865322  444566788999999999999999999977654    489999999999999999876


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCcc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYL  148 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~  148 (218)
                      +.    .++.....+..|++.|+.|||+  +|||||||||.||+++.+|.+|++|||.+..            ....||+
T Consensus      1329 ri----~dE~vt~vyt~qll~gla~LH~--~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~ 1402 (1509)
T KOG4645|consen 1329 RI----EDEMVTRVYTKQLLEGLAYLHE--HGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTP 1402 (1509)
T ss_pred             ch----hhhhHHHHHHHHHHHHHHHHHh--cCceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCc
Confidence            43    7788888899999999999999  7799999999999999999999999998754            4568999


Q ss_pred             cccccccCCCCc---------------hhhhhhhCCCCCCcchh
Q psy238          149 SATRQTYGRPIS---------------GQYEIVTKTNNVTEKKK  177 (218)
Q Consensus       149 ~y~aPE~~~~~~---------------~~~ei~tg~~p~~~~~~  177 (218)
                      -|||||+.....               ...||+||++||.....
T Consensus      1403 ~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn 1446 (1509)
T KOG4645|consen 1403 MYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN 1446 (1509)
T ss_pred             hhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc
Confidence            999999722111               15899999999975443

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.93  E-value=2.8e-25  Score=178.00  Aligned_cols=165  Identities=18%  Similarity=0.281  Sum_probs=133.9

Q ss_pred             CCCCCcEEEEEEeeccccccc-----HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNF-----KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF   76 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~-----~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~   76 (218)
                      +..+|..||+|.+........     ......+.+|+.+++.++||||+++++++....    ..++||||+++++|.++
T Consensus        21 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~   96 (267)
T cd06628          21 NASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDAD----HLNIFLEYVPGGSVAAL   96 (267)
T ss_pred             ecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCC----ccEEEEEecCCCCHHHH
Confidence            456788999998875322211     123457888999999999999999999987644    58999999999999999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------------
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------------  142 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------------  142 (218)
                      +...    ..++...+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...              
T Consensus        97 l~~~----~~l~~~~~~~~~~~l~~~l~~lH~--~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  170 (267)
T cd06628          97 LNNY----GAFEETLVRNFVRQILKGLNYLHN--RGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARP  170 (267)
T ss_pred             HHhc----cCccHHHHHHHHHHHHHHHHHHHh--cCcccccCCHHHEEEcCCCCEEecccCCCcccccccccCCcccccc
Confidence            9765    348899999999999999999999  67999999999999999999999999987642              


Q ss_pred             cCCCcccccccccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          143 ENKKYLSATRQTYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       143 ~~~~t~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ...++..|+|||+..  .++.          ++++++|..||....
T Consensus       171 ~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  216 (267)
T cd06628         171 SLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCT  216 (267)
T ss_pred             ccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCcc
Confidence            134678899999732  2221          799999999997653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.93  E-value=3.5e-25  Score=181.70  Aligned_cols=165  Identities=20%  Similarity=0.249  Sum_probs=136.0

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||++....  ........+..|+.+++.++||||+++++++....    .++++|+|+++++|.+++.....
T Consensus        22 ~~~~~~~avK~~~~~~--~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~----~~~~~~e~~~~~~l~~~l~~~~~   95 (314)
T cd08216          22 KPTNTLVAVKKINLDS--CSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDS----ELYVVSPLMAYGSCEDLLKTHFP   95 (314)
T ss_pred             cCCCCEEEEEEEeccc--cchhHHHHHHHHHHHHHhcCCcchhhhhheeecCC----eEEEEEeccCCCCHHHHHHHhcc
Confidence            4589999999997531  22445678999999999999999999999987654    58999999999999999987533


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------------ccCCCc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------------IENKKY  147 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------------~~~~~t  147 (218)
                        ..+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||.+..               ....++
T Consensus        96 --~~~~~~~~~~~~~~l~~~L~~LH~--~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
T cd08216          96 --EGLPELAIAFILKDVLNALDYIHS--KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKN  171 (314)
T ss_pred             --cCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCcceEEEecCCceEEecCccceeecccccccccccccccccccc
Confidence              348899999999999999999999  7799999999999999999999999997643               223567


Q ss_pred             ccccccccCC----CCch----------hhhhhhCCCCCCcchh
Q psy238          148 LSATRQTYGR----PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       148 ~~y~aPE~~~----~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ..|+|||+..    .++.          ++++++|..||.....
T Consensus       172 ~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~  215 (314)
T cd08216         172 LPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPA  215 (314)
T ss_pred             ccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            7899999732    1222          6899999999986543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.93  E-value=3.9e-25  Score=177.62  Aligned_cols=166  Identities=18%  Similarity=0.220  Sum_probs=130.1

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      .++..+|+|.+...   ........+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++..... 
T Consensus        20 ~~~~~~~~k~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~~~   92 (269)
T cd05087          20 YTPAQVVVKELRVS---ASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVT----PYLLVMEFCPLGDLKGYLRSCRKA   92 (269)
T ss_pred             CCceEEEEEecCCC---CChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC----CcEEEEECCCCCcHHHHHHHhhhc
Confidence            35567999988643   22334457888999999999999999999987644    48999999999999999976432 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATR  152 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~a  152 (218)
                      ....+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..          ....++..|+|
T Consensus        93 ~~~~~~~~~~~~~~~qi~~al~~lH~--~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  170 (269)
T cd05087          93 ELMTPDPTTLQRMACEIALGLLHLHK--NNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIA  170 (269)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHH--CCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccC
Confidence            11246677888999999999999999  7799999999999999999999999998853          12345678999


Q ss_pred             cccCCC---------Cch----------hhhhhh-CCCCCCcchhh
Q psy238          153 QTYGRP---------ISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~~---------~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      ||+...         ++.          ++++++ |..||.....+
T Consensus       171 PE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~  216 (269)
T cd05087         171 PELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDE  216 (269)
T ss_pred             HhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChH
Confidence            997321         111          688886 99999765443

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG4279|consensus

Probab=99.93  E-value=2e-26  Score=198.06  Aligned_cols=161  Identities=20%  Similarity=0.266  Sum_probs=136.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..|...+|||.+.-    ......+.+..||.+-+.++|.|||+++|.+...    +++-+.||-++||||.++++.. 
T Consensus       596 D~~tqvrIaIKEIpe----kdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~sen----Gf~kIFMEqVPGGSLSsLLrsk-  666 (1226)
T KOG4279|consen  596 DMDTQVRIAIKEIPE----KDSREVQPLHEEIALHSTLRHKNIVRYLGSVSEN----GFFKIFMEQVPGGSLSSLLRSK-  666 (1226)
T ss_pred             cccceeEEEeeeccc----ccchhhccHHHHHHHHHHHhhHhHHHHhhccCCC----CeEEEEeecCCCCcHHHHHHhc-
Confidence            677888999999873    2345667899999999999999999999998654    3688999999999999999874 


Q ss_pred             ccCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-CCcEEEeecCcccc--------ccCCCcccc
Q psy238           82 RNVKKL--PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~--~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                        ++++  .+.++-.+..||+.||.|||+  +.|||||||-+|+||+- .|.+||+|||.+..        .+..||..|
T Consensus       667 --WGPlKDNEstm~fYtkQILeGLkYLHe--n~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQY  742 (1226)
T KOG4279|consen  667 --WGPLKDNESTMNFYTKQILEGLKYLHE--NKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQY  742 (1226)
T ss_pred             --cCCCccchhHHHHHHHHHHHHhhhhhh--cceeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhh
Confidence              4567  889999999999999999999  77999999999999974 59999999998865        678999999


Q ss_pred             ccccc---CCC-C----------chhhhhhhCCCCCCcc
Q psy238          151 TRQTY---GRP-I----------SGQYEIVTKTNNVTEK  175 (218)
Q Consensus       151 ~aPE~---~~~-~----------~~~~ei~tg~~p~~~~  175 (218)
                      ||||+   |.. +          +...||.||++||.+.
T Consensus       743 MAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~El  781 (1226)
T KOG4279|consen  743 MAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVEL  781 (1226)
T ss_pred             hChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeec
Confidence            99997   221 1          1168899999999754

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.93  E-value=3.5e-25  Score=176.99  Aligned_cols=161  Identities=21%  Similarity=0.262  Sum_probs=130.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|.+...     ....+.+.+|+.+++.++||||+++++++.+..    ..++||||+++++|.+++.....  
T Consensus        29 ~~~~v~iK~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~--   97 (261)
T cd05072          29 NSTKVAVKTLKPG-----TMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEE----PIYIITEYMAKGSLLDFLKSDEG--   97 (261)
T ss_pred             CCceEEEEEccCC-----chhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC----CcEEEEecCCCCcHHHHHHHhcC--
Confidence            4567999987632     223567889999999999999999998886643    58999999999999999976532  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...         ...++..|+|||+
T Consensus        98 ~~~~~~~~~~~~~~l~~~l~~LH~--~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  175 (261)
T cd05072          98 GKVLLPKLIDFSAQIAEGMAYIER--KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEA  175 (261)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--CCeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHH
Confidence            458889999999999999999999  77999999999999999999999999998651         2234567999996


Q ss_pred             C--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          156 G--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       156 ~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      .  ..++.          +|+++| |..||.+...+
T Consensus       176 ~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~  211 (261)
T cd05072         176 INFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS  211 (261)
T ss_pred             hccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHH
Confidence            2  22222          688998 99999765443

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0614|consensus

Probab=99.93  E-value=1.1e-27  Score=199.41  Aligned_cols=159  Identities=16%  Similarity=0.185  Sum_probs=136.5

Q ss_pred             EEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCC
Q psy238            9 VVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP   88 (218)
Q Consensus         9 vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~   88 (218)
                      +|+|+++..+..+ ....+.+..|-.||..++.|.||++|..|.++.    ++||+||-|-||.|+..++.++    .|+
T Consensus       448 fAlKilkK~hIVd-tkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~k----yvYmLmEaClGGElWTiLrdRg----~Fd  518 (732)
T KOG0614|consen  448 FALKILKKKHIVD-TKQQEHVFSERNIMMECRSDFIVRLYRTFRDSK----YVYMLMEACLGGELWTILRDRG----SFD  518 (732)
T ss_pred             HHHHHHhHhhccc-hhHHHHHHhHHHHHHhcCchHHHHHHHHhccch----hhhhhHHhhcCchhhhhhhhcC----Ccc
Confidence            6777776544444 456678889999999999999999999998754    6999999999999999999874    499


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccccc----CC
Q psy238           89 LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQTY----GR  157 (218)
Q Consensus        89 ~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE~----~~  157 (218)
                      ..++..++..++.|++|||+  ++||+|||||+|.|++.+|.+||.|||++..       .+.+||+.|.|||+    |-
T Consensus       519 d~tarF~~acv~EAfeYLH~--k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGH  596 (732)
T KOG0614|consen  519 DYTARFYVACVLEAFEYLHR--KGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGH  596 (732)
T ss_pred             cchhhhhHHHHHHHHHHHHh--cCceeccCChhheeeccCCceEEeehhhHHHhccCCceeeecCCcccccchhhhccCc
Confidence            99999999999999999999  7799999999999999999999999999865       67899999999996    22


Q ss_pred             ----CCch----hhhhhhCCCCCCcchhh
Q psy238          158 ----PISG----QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       158 ----~~~~----~~ei~tg~~p~~~~~~e  178 (218)
                          .++.    .||+++|.+||.+...=
T Consensus       597 D~avDyWaLGIli~ELL~G~pPFs~~dpm  625 (732)
T KOG0614|consen  597 DRAVDYWALGILIYELLTGSPPFSGVDPM  625 (732)
T ss_pred             chhhHHHHHHHHHHHHHcCCCCCCCCchH
Confidence                2222    69999999999876543

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.93  E-value=3.6e-25  Score=179.09  Aligned_cols=163  Identities=23%  Similarity=0.329  Sum_probs=130.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+...    .......+.+|+.+++.+.||||+++++++...+  ...+++||||+++++|.+++....
T Consensus        29 ~~~~~~~v~iK~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~  102 (284)
T cd05081          29 QDNTGEVVAVKKLQHS----TAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG--RRNLRLVMEYLPYGSLRDYLQKHR  102 (284)
T ss_pred             cCCCCcEEEEEEeccC----CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCC--CCceEEEEEecCCCCHHHHHHhcC
Confidence            5567899999998732    2445567889999999999999999999876532  235899999999999999997543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccccc-----------CCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIE-----------NKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~-----------~~~t~~y  150 (218)
                         ..+++..++.++.|++.||.|||+  +|++|+||+|+|||++.++.++|+|||++....           ..++..|
T Consensus       103 ---~~l~~~~~~~~~~~l~~aL~~LH~--~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y  177 (284)
T cd05081         103 ---ERLDHRKLLLYASQICKGMEYLGS--KRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFW  177 (284)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHH--CCceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEe
Confidence               348899999999999999999999  779999999999999999999999999887521           1223459


Q ss_pred             cccccCC--CCch----------hhhhhhCCCCCCcc
Q psy238          151 TRQTYGR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       151 ~aPE~~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      +|||+..  .++.          ++++++|..|+...
T Consensus       178 ~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~  214 (284)
T cd05081         178 YAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSP  214 (284)
T ss_pred             eCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCc
Confidence            9999732  2222          68888887776543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.93  E-value=4.2e-25  Score=176.14  Aligned_cols=160  Identities=19%  Similarity=0.304  Sum_probs=128.8

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|.+....     .....+.+|+.+++.++||||+++++++....    .+++||||+++++|.+++....   
T Consensus        27 ~~~~~a~K~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~iv~e~~~~~~L~~~~~~~~---   94 (256)
T cd05114          27 AQIKVAIKAINEGA-----MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQK----PLYIVTEFMENGCLLNYLRQRQ---   94 (256)
T ss_pred             cCceEEEEecccCC-----ccHHHHHHHHHHHHHCCCCCceeEEEEEccCC----CEEEEEEcCCCCcHHHHHHhCc---
Confidence            34679999876321     12356788999999999999999999987644    5899999999999999987543   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..         ....++..|+|||+
T Consensus        95 ~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~  172 (256)
T cd05114          95 GKLSKDMLLSMCQDVCEGMEYLER--NSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEV  172 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH--CCccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhh
Confidence            248899999999999999999999  7799999999999999999999999998764         12234567999997


Q ss_pred             CC--CCch----------hhhhhh-CCCCCCcchhh
Q psy238          156 GR--PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       156 ~~--~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      ..  .++.          ++++++ |..||......
T Consensus       173 ~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~  208 (256)
T cd05114         173 FNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNY  208 (256)
T ss_pred             cccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            32  2222          688888 89999766543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=4.6e-25  Score=176.78  Aligned_cols=166  Identities=23%  Similarity=0.301  Sum_probs=135.0

Q ss_pred             CCCCCcEEEEEEeecccc-cccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSER-KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~-~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||+|.+..... .........+.+|+.+++.++||||+++++++.+..  ...+++||||+++++|.+++...
T Consensus        23 ~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~--~~~~~~v~e~~~~~~L~~~~~~~  100 (264)
T cd06653          23 DADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPE--EKKLSIFVEYMPGGSIKDQLKAY  100 (264)
T ss_pred             EcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCC--CCEEEEEEEeCCCCcHHHHHHHc
Confidence            456899999998864321 122345567889999999999999999999886643  24688999999999999998754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~  149 (218)
                          ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..           ....++..
T Consensus       101 ----~~l~~~~~~~~~~~i~~al~~LH~--~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (264)
T cd06653         101 ----GALTENVTRRYTRQILQGVSYLHS--NMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPY  174 (264)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHh--CCEecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCccc
Confidence                348899999999999999999999  7799999999999999999999999998864           12357889


Q ss_pred             ccccccCC--CCch----------hhhhhhCCCCCCcc
Q psy238          150 ATRQTYGR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+|||+..  .++.          ++++++|..||...
T Consensus       175 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  212 (264)
T cd06653         175 WMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY  212 (264)
T ss_pred             ccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence            99999732  2221          78999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.93  E-value=4e-25  Score=178.37  Aligned_cols=167  Identities=14%  Similarity=0.155  Sum_probs=135.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...... .......+..|+.+++.++||||+.+++++...+    .+|+||||+++++|.+++....
T Consensus        14 ~~~~~~~~~ik~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~   88 (277)
T cd05577          14 VKATGKMYACKKLDKKRLK-KRKGEQMALNEKKILEKVSSRFIVSLAYAFETKD----DLCLVMTLMNGGDLKYHIYNVG   88 (277)
T ss_pred             EcCCCcEEEEEEEehhhhh-hhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCC----eEEEEEecCCCCcHHHHHHHcC
Confidence            3567899999998743211 1234456678999999999999999999887643    5899999999999999998654


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      .  ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..       ....++..|+|||
T Consensus        89 ~--~~~~~~~~~~~~~ql~~~l~~lH~--~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE  164 (277)
T cd05577          89 E--PGFPEARAIFYAAQIICGLEHLHQ--RRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPE  164 (277)
T ss_pred             c--CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccccCCCCcCCHH
Confidence            2  358999999999999999999999  6799999999999999999999999998764       2346678999999


Q ss_pred             cC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          155 YG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +.  ..++.          ++++++|..||.....
T Consensus       165 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  199 (277)
T cd05577         165 VLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKE  199 (277)
T ss_pred             HhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcc
Confidence            72  22221          6899999999976554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.93  E-value=3.7e-25  Score=176.27  Aligned_cols=162  Identities=25%  Similarity=0.336  Sum_probs=135.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++......  ........+|+.++..++||||+++++++.+..    .+++||+++++++|.+++... 
T Consensus        20 ~~~~~~~~~~K~~~~~~~~--~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~----~~~~v~~~~~~~~L~~~l~~~-   92 (260)
T PF00069_consen   20 NKKNGQKVAVKIIDKSEIE--EEEREENIREIKILRRLRHPNIVQILDVFQDDN----YLYIVMEYCPGGSLQDYLQKN-   92 (260)
T ss_dssp             ETTTTEEEEEEEEESTTHH--HHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESS----EEEEEEEEETTEBHHHHHHHH-
T ss_pred             ECCCCeEEEEEEecccccc--ccccchhhhhhhccccccccccccccccccccc----ccccccccccccccccccccc-
Confidence            4567889999999864222  223334456999999999999999999998743    689999999888999999843 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.+||+  .+++|+||+|+||+++.++.++|+|||.+..        ....++..|+||
T Consensus        93 ---~~~~~~~~~~~~~qi~~~L~~Lh~--~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  167 (260)
T PF00069_consen   93 ---KPLSEEEILKIAYQILEALAYLHS--KGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAP  167 (260)
T ss_dssp             ---SSBBHHHHHHHHHHHHHHHHHHHH--TTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCH
T ss_pred             ---cccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               348999999999999999999999  7799999999999999999999999998852        457789999999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcc
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+..   ..+.          +++|++|..||...
T Consensus       168 E~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~  202 (260)
T PF00069_consen  168 EVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES  202 (260)
T ss_dssp             HHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            9843   3333          68999999999877

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.93  E-value=3.4e-25  Score=179.33  Aligned_cols=168  Identities=15%  Similarity=0.192  Sum_probs=134.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||+|++...     ......+.+|+.++..+ +||||+++++++.... ..+..+++||||+++++|.+++..
T Consensus        39 ~~~~~~~~~ik~~~~~-----~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  113 (286)
T cd06638          39 NKKNGSKAAVKILDPI-----HDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKG  113 (286)
T ss_pred             ECCCCceeEEEeeccc-----cchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHH
Confidence            4567889999987632     12235677899999998 6999999999875432 234578999999999999998875


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSAT  151 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~  151 (218)
                      .......+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....+++.|+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~  191 (286)
T cd06638         114 FLKRGERMEEPIIAYILHEALMGLQHLHV--NKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWM  191 (286)
T ss_pred             hhccCccccHHHHHHHHHHHHHHHHHHHh--CCccccCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCccc
Confidence            43333568899999999999999999999  7799999999999999999999999998764        2346889999


Q ss_pred             ccccCC-------CCch----------hhhhhhCCCCCCcch
Q psy238          152 RQTYGR-------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       152 aPE~~~-------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |||+..       .++.          ++++++|..||....
T Consensus       192 aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~  233 (286)
T cd06638         192 APEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLH  233 (286)
T ss_pred             ChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCc
Confidence            999631       1111          689999999997553

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.93  E-value=4.1e-25  Score=177.22  Aligned_cols=166  Identities=24%  Similarity=0.294  Sum_probs=134.3

Q ss_pred             CCCCCcEEEEEEeeccccc-ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERK-NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~-~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|.+...... ........+.+|+.+++.++||||+++++++....  ...++++|+|+++++|.+++...
T Consensus        23 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~~l~~e~~~~~~L~~~l~~~  100 (266)
T cd06651          23 DVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRA--EKTLTIFMEYMPGGSVKDQLKAY  100 (266)
T ss_pred             EcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCC--CCEEEEEEeCCCCCcHHHHHHHc
Confidence            4567899999998753221 12334567889999999999999999999886532  24689999999999999999764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~  149 (218)
                          ..++...++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..           ....++..
T Consensus       101 ----~~l~~~~~~~~~~qi~~~l~~LH~--~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (266)
T cd06651         101 ----GALTESVTRKYTRQILEGMSYLHS--NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPY  174 (266)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHh--CCeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCcccc
Confidence                348899999999999999999999  6699999999999999999999999998753           12357889


Q ss_pred             ccccccCC--CCch----------hhhhhhCCCCCCcc
Q psy238          150 ATRQTYGR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+|||+..  .++.          ++++++|..||...
T Consensus       175 y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~  212 (266)
T cd06651         175 WMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEY  212 (266)
T ss_pred             ccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcccc
Confidence            99999732  2221          79999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.93  E-value=1.3e-25  Score=182.86  Aligned_cols=161  Identities=16%  Similarity=0.263  Sum_probs=133.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+...    .......+.+|+.++..++||||+++++.+...+    ..|+||||+++++|.+++..  
T Consensus        43 ~~~~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~--  112 (292)
T cd06658          43 EKHTGKQVAVKKMDLR----KQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGD----ELWVVMEFLEGGALTDIVTH--  112 (292)
T ss_pred             ECCCCCEEEEEEEecc----hHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCC----eEEEEEeCCCCCcHHHHHhc--
Confidence            3457889999988632    2345567889999999999999999999887643    68999999999999998854  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.||+.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus       113 ---~~l~~~~~~~~~~qi~~~l~~LH~--~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aP  187 (292)
T cd06658         113 ---TRMNEEQIATVCLSVLRALSYLHN--QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAP  187 (292)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCH
Confidence               248899999999999999999999  7799999999999999999999999998754        234578899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..  .++.          ++++++|..||.....
T Consensus       188 E~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~  223 (292)
T cd06658         188 EVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPP  223 (292)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9732  2222          7999999999975443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.93  E-value=5e-25  Score=176.18  Aligned_cols=164  Identities=20%  Similarity=0.215  Sum_probs=135.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++..... ........+.+|+.+++.++||||+++++++.+..    .+|+||||+++++|.+++....
T Consensus        14 ~~~~~~~~~iK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~   88 (262)
T cd05572          14 VKSKNRTFALKCVKKRHI-VETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKK----YIYMLMEYCLGGELWTILRDRG   88 (262)
T ss_pred             ECCCCcEEEEEEEehhcc-hhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCC----ccEEEEecCCCCcHHHHHhhcC
Confidence            345789999999974321 22345577899999999999999999999887643    5899999999999999997643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-------cCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-------ENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-------~~~~t~~y~aPE  154 (218)
                          .++...+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+...       ...++..|+|||
T Consensus        89 ----~l~~~~~~~~~~~i~~~l~~lH~--~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE  162 (262)
T cd05572          89 ----LFDEYTARFYIACVVLAFEYLHN--RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPE  162 (262)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHhh--CCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccccCCcCccChh
Confidence                38999999999999999999999  77999999999999999999999999988752       245688999999


Q ss_pred             cC--CCCch----------hhhhhhCCCCCCcch
Q psy238          155 YG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +.  ..++.          +|++++|..||....
T Consensus       163 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  196 (262)
T cd05572         163 IILNKGYDFSVDYWSLGILLYELLTGRPPFGEDD  196 (262)
T ss_pred             HhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCC
Confidence            62  22211          699999999997765

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=6.4e-25  Score=177.23  Aligned_cols=160  Identities=20%  Similarity=0.284  Sum_probs=127.1

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      ...||+|++...    .......+..|+.+++.++||||+++++++....    ..++||||+++++|..++....   .
T Consensus        44 ~~~v~~k~~~~~----~~~~~~~~~~~~~~~~~l~h~niv~~~~~~~~~~----~~~lv~ey~~~g~L~~~l~~~~---~  112 (274)
T cd05076          44 ELRVVLKVLDPS----HRDIALAFFETASLMSQVSHIHLAFVHGVCVRGS----ENIMVEEFVEHGPLDVCLRKEK---G  112 (274)
T ss_pred             eeeEEEEecChH----HHHHHHHHHHHHHHHhcCCCCCeeeEEEEEEeCC----ceEEEEecCCCCcHHHHHHhcC---C
Confidence            346999988732    2344567888899999999999999999987654    5899999999999999987532   3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-------cEEEeecCcccc----ccCCCcccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-------LVKIGCDTYTHT----IENKKYLSATRQT  154 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-------~~ki~dfg~~~~----~~~~~t~~y~aPE  154 (218)
                      .+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++       .++++|||.+..    ....++..|+|||
T Consensus       113 ~~~~~~~~~i~~qi~~~l~~lH~--~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe  190 (274)
T cd05076         113 RVPVAWKITVAQQLASALSYLED--KNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPE  190 (274)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHc--CCccCCCCCcccEEEeccCcccCccceeeecCCccccccccccccccCCcccCch
Confidence            58999999999999999999999  7799999999999997643       489999998754    3445788899999


Q ss_pred             cCC---CCch----------hhhh-hhCCCCCCcchhh
Q psy238          155 YGR---PISG----------QYEI-VTKTNNVTEKKKE  178 (218)
Q Consensus       155 ~~~---~~~~----------~~ei-~tg~~p~~~~~~e  178 (218)
                      +..   .++.          ++++ ++|..||......
T Consensus       191 ~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~  228 (274)
T cd05076         191 CVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPS  228 (274)
T ss_pred             hhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChH
Confidence            632   1222          5777 5799999765543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.93  E-value=6.4e-25  Score=179.70  Aligned_cols=166  Identities=17%  Similarity=0.213  Sum_probs=134.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..||+|.+..... ........+.+|+.++..++||||+++++.+....    ++++||||++|++|.+++... 
T Consensus        22 ~~~~~~~v~ik~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~g~~L~~~l~~~-   95 (305)
T cd05609          22 HKETRQRFAMKKINKQNL-ILRNQIQQVFVERDILTFAENPFVVSMFCSFETKR----HLCMVMEYVEGGDCATLLKNI-   95 (305)
T ss_pred             ECCCCcEEEEEEeehhhh-hhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCC----EEEEEEecCCCCcHHHHHHHc-
Confidence            356788999998874321 11334567789999999999999999999886543    689999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------------------  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------------------  141 (218)
                         ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..                    
T Consensus        96 ---~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~  170 (305)
T cd05609          96 ---GALPVDMARMYFAETVLALEYLHN--YGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTRE  170 (305)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhh
Confidence               348999999999999999999999  7799999999999999999999999998752                    


Q ss_pred             ---ccCCCcccccccccCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          142 ---IENKKYLSATRQTYGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       142 ---~~~~~t~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                         ....++..|+|||+..  .++.          ++++++|..||.+...+
T Consensus       171 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~  222 (305)
T cd05609         171 FLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPE  222 (305)
T ss_pred             ccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence               1135677899999622  2222          68999999999765443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=5.9e-25  Score=176.32  Aligned_cols=166  Identities=17%  Similarity=0.228  Sum_probs=135.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCC--CCCCeEEEEEeccCCCCHHHHHHh
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTH--NDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~--~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ..++..||+|++...     ......+.+|+.++..+ .||||+++++++....  .....+|+||+|+++++|.+++..
T Consensus        28 ~~~~~~~~~k~~~~~-----~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~  102 (275)
T cd06608          28 KKTGQLVAIKIMDII-----EDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKG  102 (275)
T ss_pred             CCCCcEEEEEEEecC-----chhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHH
Confidence            457889999998743     22345788999999998 7999999999987654  234578999999999999999876


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSAT  151 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~  151 (218)
                      .......+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..        ....++..|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~ql~~al~~lH~--~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~  180 (275)
T cd06608         103 LRKKGKRLKEEWIAYILRETLRGLAYLHE--NKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWM  180 (275)
T ss_pred             HhhcCCCCCHHHHHHHHHHHHHHHHHHhc--CCcccCCCCHHHEEEccCCeEEECCCccceecccchhhhcCcccccccc
Confidence            54223568999999999999999999999  7799999999999999999999999998754        3455788999


Q ss_pred             ccccCCC-------Cch----------hhhhhhCCCCCCcc
Q psy238          152 RQTYGRP-------ISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       152 aPE~~~~-------~~~----------~~ei~tg~~p~~~~  175 (218)
                      |||+...       ++.          ++++++|..||...
T Consensus       181 aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  221 (275)
T cd06608         181 APEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDM  221 (275)
T ss_pred             CHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCcccc
Confidence            9996321       111          68999999999754

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.93  E-value=3.9e-25  Score=177.57  Aligned_cols=165  Identities=18%  Similarity=0.214  Sum_probs=133.5

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCC--CCeEEEEEeccCCCCHHHHHHh
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHND--KPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ..+++.||+|.+...     ......+..|+.++..+ +||||+++++++......  ...+|+||||+++++|.+++..
T Consensus        28 ~~~~~~~aik~~~~~-----~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~  102 (272)
T cd06637          28 VKTGQLAAIKVMDVT-----GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKN  102 (272)
T ss_pred             cCCCcEEEEEEEEcC-----CccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHh
Confidence            457889999998743     12234677899999988 799999999998764321  2468999999999999999986


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSAT  151 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~  151 (218)
                      ...  ..+++..+..++.|++.||.|||+  ++|+|+||+|+||+++.++.++|+|||++..        ....++..|+
T Consensus       103 ~~~--~~l~~~~~~~~~~qi~~~l~~LH~--~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~  178 (272)
T cd06637         103 TKG--NTLKEEWIAYICREILRGLSHLHQ--HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWM  178 (272)
T ss_pred             ccC--CCCCHHHHHHHHHHHHHHHHHHHH--CCCccCCCCHHHEEECCCCCEEEccCCCceecccccccCCccccccccc
Confidence            432  458899999999999999999999  7799999999999999999999999999764        2356788999


Q ss_pred             ccccCC-------CCch----------hhhhhhCCCCCCcch
Q psy238          152 RQTYGR-------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       152 aPE~~~-------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |||+..       .++.          ++++++|..||....
T Consensus       179 aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~  220 (272)
T cd06637         179 APEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH  220 (272)
T ss_pred             CHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccC
Confidence            999732       1211          689999999996543

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.93  E-value=5e-25  Score=178.27  Aligned_cols=165  Identities=13%  Similarity=0.154  Sum_probs=128.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHH---HhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFE---NLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~---~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|..||||.+....... ........++..   ++....||+|+.+++++...+    .+++||||+++++|.+++.
T Consensus        15 ~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~   89 (279)
T cd05633          15 KADTGKMYAMKCLDKKRIKM-KQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPD----KLCFILDLMNGGDLHYHLS   89 (279)
T ss_pred             ECCCCcEEEEEEEEcccccc-chHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCC----eEEEEEecCCCCCHHHHHH
Confidence            45678999999887432211 122223334443   334457999999999887643    5899999999999999987


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCcccccc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATR  152 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~a  152 (218)
                      ..    ..+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..      ....++..|+|
T Consensus        90 ~~----~~l~~~~~~~i~~qi~~al~~lH~--~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~a  163 (279)
T cd05633          90 QH----GVFSEKEMRFYATEIILGLEHMHN--RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMA  163 (279)
T ss_pred             hc----CCCCHHHHHHHHHHHHHHHHHHHH--CCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCCCcCccC
Confidence            64    349999999999999999999999  7799999999999999999999999998754      33468999999


Q ss_pred             cccC---CCCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYG---RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~---~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||..   ..++.          ++++++|..||.....
T Consensus       164 PE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~  201 (279)
T cd05633         164 PEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKT  201 (279)
T ss_pred             HHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCC
Confidence            9973   22222          6899999999976543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.93  E-value=2.7e-25  Score=179.29  Aligned_cols=161  Identities=19%  Similarity=0.209  Sum_probs=133.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...   ........+.+|+.+++.++||||+++++++....    .+|+||||+++++|.+++..  
T Consensus        25 ~~~~~~~vaiK~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~--   95 (277)
T cd06642          25 DNRTKEVVAIKIIDLE---EAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGT----KLWIIMEYLGGGSALDLLKP--   95 (277)
T ss_pred             EcCCCeEEEEEEeccc---cchHHHHHHHHHHHHHHcCCCCccHhhhcccccCC----ceEEEEEccCCCcHHHHhhc--
Confidence            4567889999998743   22345567889999999999999999999987643    58999999999999998864  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        96 ---~~~~~~~~~~~~~~i~~~l~~lH~--~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  170 (277)
T cd06642          96 ---GPLEETYIATILREILKGLDYLHS--ERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAP  170 (277)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHhc--CCeeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCH
Confidence               348899999999999999999999  7799999999999999999999999998864        223578899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  .++.          ++++++|..|+....
T Consensus       171 E~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~  205 (277)
T cd06642         171 EVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLH  205 (277)
T ss_pred             HHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccc
Confidence            9732  2222          689999999987543

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>PTZ00284 protein kinase; Provisional

Probab=99.93  E-value=3.6e-25  Score=191.44  Aligned_cols=163  Identities=12%  Similarity=0.092  Sum_probs=124.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC------CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE------HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~------hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      |..+|..||||++...     ......+..|+.++..+.      |++++.++++|....   .++|+||+++ +++|.+
T Consensus       150 ~~~~~~~vAvK~i~~~-----~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~---~~~~iv~~~~-g~~l~~  220 (467)
T PTZ00284        150 DRKRKEYCAVKIVRNV-----PKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNET---GHMCIVMPKY-GPCLLD  220 (467)
T ss_pred             EcCCCeEEEEEEEecc-----hhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCC---ceEEEEEecc-CCCHHH
Confidence            4567889999999632     122333455666665554      456888888886532   4789999998 789999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC----------------cEEEeecCcc
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG----------------LVKIGCDTYT  139 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~----------------~~ki~dfg~~  139 (218)
                      ++...    ..+++..+..++.||+.||.|||+. .+|+||||||+|||++.++                .++|+|||.+
T Consensus       221 ~l~~~----~~l~~~~~~~i~~qi~~aL~yLH~~-~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~  295 (467)
T PTZ00284        221 WIMKH----GPFSHRHLAQIIFQTGVALDYFHTE-LHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGC  295 (467)
T ss_pred             HHHHc----CCCCHHHHHHHHHHHHHHHHHHHhc-CCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCcc
Confidence            88765    3499999999999999999999971 2599999999999998765                4999999987


Q ss_pred             cc-----ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          140 HT-----IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       140 ~~-----~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ..     ....||+.|+|||+  +..++.          +|+|++|+.||.+....
T Consensus       296 ~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~  351 (467)
T PTZ00284        296 CDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNL  351 (467)
T ss_pred             ccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence            54     45678999999997  333332          79999999999876543

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.93  E-value=4.2e-25  Score=179.31  Aligned_cols=163  Identities=17%  Similarity=0.223  Sum_probs=132.8

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|..||+|++..............+.+|+.++..+ +||+|+.+++++....    .+|+||||+++++|.+++... 
T Consensus        25 ~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   99 (290)
T cd05613          25 HDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDT----KLHLILDYINGGELFTHLSQR-   99 (290)
T ss_pred             CCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCC----eEEEEEecCCCCcHHHHHHHc-
Confidence            3588999999997432222234456778899999999 6899999998887643    589999999999999999765 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~a  152 (218)
                         .++++..+..++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...         ...++..|+|
T Consensus       100 ---~~l~~~~~~~~~~qi~~al~~lH~--~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~a  174 (290)
T cd05613         100 ---ERFKEQEVQIYSGEIVLALEHLHK--LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMA  174 (290)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCHHHeEECCCCCEEEeeCccceecccccccccccccCCcccCC
Confidence               348899999999999999999999  77999999999999999999999999987641         2347889999


Q ss_pred             cccCCC----Cch----------hhhhhhCCCCCCcc
Q psy238          153 QTYGRP----ISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       153 PE~~~~----~~~----------~~ei~tg~~p~~~~  175 (218)
                      ||+...    .+.          ++++++|..||...
T Consensus       175 PE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~  211 (290)
T cd05613         175 PDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVD  211 (290)
T ss_pred             hhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcC
Confidence            997321    111          79999999999643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.93  E-value=3.5e-25  Score=179.02  Aligned_cols=165  Identities=19%  Similarity=0.218  Sum_probs=133.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....  ........+.+|+.++..+.||||+++++++....    .+++||||+++++|..++... 
T Consensus        22 ~~~~~~~~~iK~~~~~~--~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~l~~~~~~~-   94 (286)
T cd07847          22 NRETGQIVAIKKFVESE--DDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKR----KLHLVFEYCDHTVLNELEKNP-   94 (286)
T ss_pred             ECCCCcEEEEEEEeecc--cCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCC----EEEEEEeccCccHHHHHHhCC-
Confidence            34578999999987432  12233456788999999999999999999987643    689999999987777776543 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------cCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------ENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------~~~~t~~y~aP  153 (218)
                         ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...        ...++..|+||
T Consensus        95 ---~~~~~~~~~~~~~ql~~~l~~LH~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aP  169 (286)
T cd07847          95 ---RGVPEHLIKKIIWQTLQAVNFCHK--HNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAP  169 (286)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCceecCCChhhEEEcCCCcEEECccccceecCCCcccccCcccccccCCH
Confidence               348999999999999999999999  77999999999999999999999999988752        23467889999


Q ss_pred             ccC---CCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG---RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~---~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.   ..++.          ++++++|..||.+....
T Consensus       170 E~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~  207 (286)
T cd07847         170 ELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDV  207 (286)
T ss_pred             HHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChH
Confidence            972   22222          68999999999876543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.93  E-value=1.8e-25  Score=182.54  Aligned_cols=160  Identities=18%  Similarity=0.283  Sum_probs=132.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+....    ......+.+|+.++..+.||||+++++++....    ..|+||||+++++|..++..  
T Consensus        42 ~~~~~~~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~----~~~iv~e~~~~~~L~~~~~~--  111 (297)
T cd06659          42 EKHSGRQVAVKMMDLRK----QQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGE----ELWVLMEFLQGGALTDIVSQ--  111 (297)
T ss_pred             EcCCCCEEEEEEEEecc----cchHHHHHHHHHHHHhCCCCchhhhhhheeeCC----eEEEEEecCCCCCHHHHHhh--
Confidence            35678999999987432    223456788999999999999999999887644    58999999999999998754  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus       112 ---~~~~~~~~~~~~~qi~~~L~~LH~--~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aP  186 (297)
T cd06659         112 ---TRLNEEQIATVCESVLQALCYLHS--QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAP  186 (297)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCccccCH
Confidence               248899999999999999999999  7799999999999999999999999998753        234678899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  .++.          ++++++|..||....
T Consensus       187 E~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~  221 (297)
T cd06659         187 EVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDS  221 (297)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9732  2222          799999999997543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG0984|consensus

Probab=99.93  E-value=1.3e-25  Score=168.50  Aligned_cols=167  Identities=17%  Similarity=0.182  Sum_probs=136.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|...|+|.+...  .. .....+.+.|+.+..+. ..|.+|.+||.+.+.+    .+|+.||.|+ .||+.+-..-
T Consensus        67 h~~sg~imAvKri~~t--vn-~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~reg----dvwIcME~M~-tSldkfy~~v  138 (282)
T KOG0984|consen   67 HIQSGTIMAVKRIRAT--VN-SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREG----DVWICMELMD-TSLDKFYRKV  138 (282)
T ss_pred             eccCCeEEEEeeehhh--cC-hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccc----cEEEeHHHhh-hhHHHHHHHH
Confidence            3578999999999853  22 45556777888876554 7899999999876654    5999999995 7999887776


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                      ...+..+|+...-+++..++.||.|||+ .+  +||||+||+|||++.+|++||||||.+..       ....|--.|||
T Consensus       139 ~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~--vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYma  216 (282)
T KOG0984|consen  139 LKKGGTIPEDVLGKIAVSVVHALEFLHSKLS--VIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMA  216 (282)
T ss_pred             HhcCCcCchHHhhHhHHHHHHHHHHHHHHhh--hhhccCCcceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCC
Confidence            6666789999999999999999999999 55  99999999999999999999999999876       34678889999


Q ss_pred             cccCC------CCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYGR------PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~------~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||...      .++.          +.||.+++.||+.+...
T Consensus       217 PEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tp  258 (282)
T KOG0984|consen  217 PERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTP  258 (282)
T ss_pred             hhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCH
Confidence            99622      2222          68899999999866543

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.93  E-value=6.3e-25  Score=177.26  Aligned_cols=161  Identities=18%  Similarity=0.209  Sum_probs=134.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++...   ........+.+|+.+++.+.||||+++++++.+..    .+|+||||+++++|.+++..  
T Consensus        25 ~~~~~~~vaiK~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~~--   95 (277)
T cd06640          25 DNRTQQVVAIKIIDLE---EAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGT----KLWIIMEYLGGGSALDLLRA--   95 (277)
T ss_pred             EccCCEEEEEEEEecc---ccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC----EEEEEEecCCCCcHHHHHhc--
Confidence            4567889999998743   22345678889999999999999999999987644    69999999999999999864  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         .+++...+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        96 ---~~l~~~~~~~~~~~l~~~l~~lh~--~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~ap  170 (277)
T cd06640          96 ---GPFDEFQIATMLKEILKGLDYLHS--EKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAP  170 (277)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCH
Confidence               248889999999999999999999  7799999999999999999999999998854        223567889999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcch
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+.  ..++.          ++++++|..||.+..
T Consensus       171 E~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~  205 (277)
T cd06640         171 EVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMH  205 (277)
T ss_pred             hHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence            973  23332          689999999997654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.93  E-value=9.4e-25  Score=177.49  Aligned_cols=162  Identities=19%  Similarity=0.211  Sum_probs=133.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+..    ........+..|+.+++.+.||||+++++++...+    .+|+||||+++++|..++....
T Consensus        33 ~~~~~~~~~~k~~~~----~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~  104 (292)
T cd06644          33 NKETGALAAAKVIET----KSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDG----KLWIMIEFCPGGAVDAIMLELD  104 (292)
T ss_pred             ECCCCceEEEEEecc----CCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCC----eEEEEEecCCCCcHHHHHHhhc
Confidence            345789999999873    23455677889999999999999999999887643    6899999999999988876543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....+++.|+||
T Consensus       105 ---~~l~~~~~~~~~~ql~~~l~~lH~--~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  179 (292)
T cd06644         105 ---RGLTEPQIQVICRQMLEALQYLHS--MKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAP  179 (292)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHhc--CCeeecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccccCc
Confidence               348999999999999999999999  7799999999999999999999999998754        234567899999


Q ss_pred             ccCC-------CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR-------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~-------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..       +++.          +|++++|..||....
T Consensus       180 E~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~  219 (292)
T cd06644         180 EVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN  219 (292)
T ss_pred             eeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcccc
Confidence            9731       1111          688999999997644

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0696|consensus

Probab=99.93  E-value=1.1e-26  Score=189.67  Aligned_cols=173  Identities=16%  Similarity=0.167  Sum_probs=141.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      |.+.||||+++..-.. .....+..+.|-++|... ..|.+++++.+|...+    ++|+||||+.||+|.-.++..+. 
T Consensus       373 tdELyAiKiLkKDVii-QdDDvectm~EKrvLAL~~kppFL~qlHScFQTmD----RLyFVMEyvnGGDLMyhiQQ~Gk-  446 (683)
T KOG0696|consen  373 TDELYAIKILKKDVII-QDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMD----RLYFVMEYVNGGDLMYHIQQVGK-  446 (683)
T ss_pred             cchhhhhhhhccceee-ecCcccceehhhhheecCCCCchHHHHHHHhhhhh----heeeEEEEecCchhhhHHHHhcc-
Confidence            4467999998843221 123345556777777776 5788999999998765    69999999999999999998754 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQTY  155 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE~  155 (218)
                         +-++.+..++..|+.||.|||+  +|||+||||.+|||++.+|+++|+|||++..        .+.+||+.|+|||+
T Consensus       447 ---FKEp~AvFYAaEiaigLFFLh~--kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEI  521 (683)
T KOG0696|consen  447 ---FKEPVAVFYAAEIAIGLFFLHS--KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEI  521 (683)
T ss_pred             ---cCCchhhhhhHHHHHHhhhhhc--CCeeeeeccccceEeccCCceEeeecccccccccCCcceeeecCCCcccccce
Confidence               8899999999999999999999  8899999999999999999999999999864        67899999999996


Q ss_pred             CC--CCc------h----hhhhhhCCCCCCcchhhhhHHHHHHHH
Q psy238          156 GR--PIS------G----QYEIVTKTNNVTEKKKEKEEEEEEEKK  188 (218)
Q Consensus       156 ~~--~~~------~----~~ei~tg~~p~~~~~~ee~~~~~~~~~  188 (218)
                      ..  |+.      .    +|||+.|..||++..++|.=....+..
T Consensus       522 i~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehn  566 (683)
T KOG0696|consen  522 IAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHN  566 (683)
T ss_pred             EEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHcc
Confidence            21  221      1    799999999999988877655555443

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.93  E-value=1e-24  Score=176.39  Aligned_cols=164  Identities=23%  Similarity=0.293  Sum_probs=131.7

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..||+|.+..    ........+.+|+.++..++||||+++++++....    ..++||||+++++|.+++......
T Consensus        33 ~~~~~~~~k~~~~----~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~~~~~~  104 (280)
T cd05092          33 QDKMLVAVKALKE----ASESARQDFQREAELLTVLQHQHIVRFYGVCTEGR----PLLMVFEYMRHGDLNRFLRSHGPD  104 (280)
T ss_pred             CCceEEEEEecCc----CCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCC----ceEEEEecCCCCCHHHHHHhcCcc
Confidence            4567899998763    23455668899999999999999999999887644    489999999999999999865321


Q ss_pred             -----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------
Q psy238           84 -----------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------  142 (218)
Q Consensus        84 -----------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------  142 (218)
                                 ...+++..++.++.|++.||.|||+  .+++|+||+|+|||+++++.++|+|||++...          
T Consensus       105 ~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~--~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~  182 (280)
T cd05092         105 AKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS--LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGG  182 (280)
T ss_pred             hhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH--CCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCC
Confidence                       1247899999999999999999999  77999999999999999999999999987531          


Q ss_pred             cCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchh
Q psy238          143 ENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       143 ~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      ...+++.|+|||+  +..++.          ++++++ |..||.....
T Consensus       183 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  230 (280)
T cd05092         183 RTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN  230 (280)
T ss_pred             CccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH
Confidence            2233578999996  222222          689998 8999866544

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=6e-25  Score=175.50  Aligned_cols=165  Identities=15%  Similarity=0.159  Sum_probs=129.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHh-hcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENL-TQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l-~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++....... ......+..|..++ ....|||++++++++...+    .+|+||||+++++|.+++...
T Consensus        17 ~~~~~~~vavK~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~   91 (260)
T cd05611          17 KRSTGDYFAIKVLKKSDMIA-KNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKD----YLYLVMEYLNGGDCASLIKTL   91 (260)
T ss_pred             ecCCCCeEEEEEecchhhhH-HHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCC----eEEEEEeccCCCCHHHHHHHc
Confidence            45678999999987432111 12223344554444 4558999999999987643    689999999999999999764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccC
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYG  156 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~  156 (218)
                          ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..    ....++..|+|||..
T Consensus        92 ----~~~~~~~~~~i~~qi~~aL~~lH~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~~pe~~  165 (260)
T cd05611          92 ----GGLPEDWAKQYIAEVVLGVEDLHQ--RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLAPETI  165 (260)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHeEECCCCcEEEeecccceeccccccCCCCcCccChhhh
Confidence                348999999999999999999999  7799999999999999999999999998875    345678899999973


Q ss_pred             C--CCch----------hhhhhhCCCCCCcchh
Q psy238          157 R--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       157 ~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      .  ..+.          ++++++|..||.....
T Consensus       166 ~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  198 (260)
T cd05611         166 LGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP  198 (260)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH
Confidence            2  1111          6899999999976544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=7.5e-25  Score=179.98  Aligned_cols=167  Identities=16%  Similarity=0.212  Sum_probs=135.8

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|.+...... .......+..|+.++..+.||||+++++.+.+..    ..|+||+|+.+++|.+++.....
T Consensus        23 ~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~~   97 (316)
T cd05574          23 KGTGKLFALKVLDKKEMI-KRNKVKRVLTEQEILATLDHPFLPTLYASFQTET----YLCLVMDYCPGGELFRLLQRQPG   97 (316)
T ss_pred             cCCCcEEEEEEEeccccc-hHHHHHHHHHHHHHHHhCCCCCchhheeeeecCC----EEEEEEEecCCCCHHHHHHhCCC
Confidence            447899999999854221 1235567889999999999999999999986643    68999999999999999875432


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------------------
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------------------  142 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------------------  142 (218)
                        ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...                    
T Consensus        98 --~~l~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  173 (316)
T cd05574          98 --KCLSEEVARFYAAEVLLALEYLHL--LGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSV  173 (316)
T ss_pred             --CccCHHHHHHHHHHHHHHHHHHHH--CCeeccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccc
Confidence              458999999999999999999999  77999999999999999999999999987541                    


Q ss_pred             -----------------cCCCcccccccccCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          143 -----------------ENKKYLSATRQTYGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       143 -----------------~~~~t~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                                       ...|+..|+|||+..  ..+.          +|++++|..||.+....
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~  238 (316)
T cd05574         174 NSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRD  238 (316)
T ss_pred             cccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence                             125678899999732  2222          79999999999766543

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.93  E-value=1e-24  Score=176.49  Aligned_cols=166  Identities=21%  Similarity=0.192  Sum_probs=131.6

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|.+...   ........+.+|+.+++.++||||+++++++....    ..|+||||+++++|.+++.....
T Consensus        31 ~~~~~~~~ik~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~  103 (283)
T cd05090          31 MDHAQLVAIKTLKDI---NNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ----PVCMLFEYLNQGDLHEFLIMRSP  103 (283)
T ss_pred             CCCcceEEEEeccCC---CCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCC----ceEEEEEcCCCCcHHHHHHhcCC
Confidence            346678999988732   22344567889999999999999999999987644    48999999999999999864321


Q ss_pred             -------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------
Q psy238           83 -------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------  141 (218)
Q Consensus        83 -------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------  141 (218)
                                   ....+++..+..++.|++.||.|||+  ++++|+||+|+|||++.++.++|+|||++..        
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~--~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~  181 (283)
T cd05090         104 HSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSS--HFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYR  181 (283)
T ss_pred             CCccccccccccccccccCHHHHHHHHHHHHHHHHHHHh--cCeehhccccceEEEcCCCcEEeccccccccccCCccee
Confidence                         01237888999999999999999999  7799999999999999999999999998864        


Q ss_pred             --ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          142 --IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       142 --~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                        ....++..|+|||+.  ...+.          ++++++ |..||.+...
T Consensus       182 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~  232 (283)
T cd05090         182 VQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSN  232 (283)
T ss_pred             cccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH
Confidence              223445679999973  22222          688888 9999976543

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=8.1e-25  Score=175.48  Aligned_cols=157  Identities=20%  Similarity=0.275  Sum_probs=126.1

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||+|.+...    .......+..|+.++..++||||+++++++....    ..++||||+++++|..++....   ..
T Consensus        33 ~~v~~k~~~~~----~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~---~~  101 (262)
T cd05077          33 IKVILKVLDPS----HRDISLAFFETASMMRQVSHKHIVLLYGVCVRDV----ENIMVEEFVEFGPLDLFMHRKS---DV  101 (262)
T ss_pred             eeEEEeecChh----hhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC----CCEEEEecccCCCHHHHHHhcC---CC
Confidence            46899987632    2344557788899999999999999999987654    4799999999999999887542   35


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc-------EEEeecCcccc----ccCCCccccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL-------VKIGCDTYTHT----IENKKYLSATRQTY  155 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~-------~ki~dfg~~~~----~~~~~t~~y~aPE~  155 (218)
                      +++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.       ++++|||++..    ....++..|+|||+
T Consensus       102 ~~~~~~~~i~~qi~~~l~~lH~--~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~  179 (262)
T cd05077         102 LTTPWKFKVAKQLASALSYLED--KDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERIPWIAPEC  179 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhh--CCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCcccccccccccChhh
Confidence            8999999999999999999999  77999999999999987654       89999998765    34567889999996


Q ss_pred             CC---CCch----------hhhhh-hCCCCCCcch
Q psy238          156 GR---PISG----------QYEIV-TKTNNVTEKK  176 (218)
Q Consensus       156 ~~---~~~~----------~~ei~-tg~~p~~~~~  176 (218)
                      ..   .++.          +|+|+ +|..||....
T Consensus       180 ~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~  214 (262)
T cd05077         180 VEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKT  214 (262)
T ss_pred             hcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcc
Confidence            32   2222          68886 6888887654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.93  E-value=2.8e-25  Score=177.27  Aligned_cols=166  Identities=19%  Similarity=0.239  Sum_probs=137.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++..... ........+.+|+++++.++||||+++++++....    .+++|++|+.+++|..++... 
T Consensus        21 ~~~~~~~~~ik~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   94 (258)
T cd05578          21 KRDTKKMFAMKYMNKQKC-VEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEE----NMYLVVDLLLGGDLRYHLSQK-   94 (258)
T ss_pred             EccCCcEEEEEEEehhhh-cchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCC----eEEEEEeCCCCCCHHHHHHhc-
Confidence            456799999999974322 12345678899999999999999999998886543    699999999999999999765 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                         .++++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..       ....++..|+|||
T Consensus        95 ---~~l~~~~~~~~~~~i~~~l~~lh~--~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE  169 (258)
T cd05578          95 ---VKFSEEQVKFWICEIVLALEYLHS--KGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPE  169 (258)
T ss_pred             ---CCcCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCHHHeEEcCCCCEEEeecccccccCCCccccccCCChhhcCHH
Confidence               348999999999999999999999  7799999999999999999999999998865       3456788999999


Q ss_pred             cCC--CCc----------hhhhhhhCCCCCCcchhh
Q psy238          155 YGR--PIS----------GQYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       155 ~~~--~~~----------~~~ei~tg~~p~~~~~~e  178 (218)
                      +..  ..+          .++++++|..||.....+
T Consensus       170 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~  205 (258)
T cd05578         170 VLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT  205 (258)
T ss_pred             HHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc
Confidence            622  111          179999999999876643

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.93  E-value=1.3e-25  Score=186.14  Aligned_cols=166  Identities=16%  Similarity=0.231  Sum_probs=135.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....  ........+.+|+.+|..++||||+++++++.........+++||+|+. ++|.+++... 
T Consensus        26 ~~~~~~~valK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-  101 (334)
T cd07855          26 DTRSGKKVAIKKIPHAF--DVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDLHHIIHSD-  101 (334)
T ss_pred             EcCCCCEEEEEEecccc--ccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEehhh-hhHHHHhccC-
Confidence            45789999999987431  1223456778899999999999999999988765555567999999995 6898888654 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYLS  149 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~~  149 (218)
                         ..+++..++.++.||+.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..            ....++..
T Consensus       102 ---~~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~  176 (334)
T cd07855         102 ---QPLTEEHIRYFLYQLLRGLKYIHS--ANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRW  176 (334)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCccccccccccc
Confidence               348999999999999999999999  7799999999999999999999999998764            12367889


Q ss_pred             ccccccCC---CCch----------hhhhhhCCCCCCcch
Q psy238          150 ATRQTYGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       150 y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+|||+..   ..+.          ++++++|+.||.+..
T Consensus       177 y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~  216 (334)
T cd07855         177 YRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKN  216 (334)
T ss_pred             ccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCC
Confidence            99999621   1111          789999999997654

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.93  E-value=9.5e-25  Score=173.88  Aligned_cols=160  Identities=17%  Similarity=0.275  Sum_probs=130.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||+|.+...      .....+.+|+.++..++||||+++++++....     .++||+|+++++|.+++..... 
T Consensus        27 ~~~~~~~iK~~~~~------~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~-----~~~v~e~~~~~~L~~~l~~~~~-   94 (254)
T cd05083          27 YTGQKVAVKNIKCD------VTAQAFLEETAVMTKLHHKNLVRLLGVILHNG-----LYIVMELMSKGNLVNFLRTRGR-   94 (254)
T ss_pred             cCCCceEEEeecCc------chHHHHHHHHHHHHhCCCCCcCeEEEEEcCCC-----cEEEEECCCCCCHHHHHHhcCc-
Confidence            46788999998642      12357889999999999999999999986532     6999999999999999986532 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccCC-
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYGR-  157 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~~-  157 (218)
                       ..+++..++.++.|++.||.|||+  .+++||||+|+||+++.++.++|+|||++..     .....+..|+|||... 
T Consensus        95 -~~~~~~~~~~~~~qi~~al~~lH~--~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~  171 (254)
T cd05083          95 -ALVSVIQLLQFSLDVAEGMEYLES--KKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKH  171 (254)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHh--CCeeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCceecCHHHhcc
Confidence             458899999999999999999999  7799999999999999999999999998865     2233456799999632 


Q ss_pred             -CCch----------hhhhhh-CCCCCCcchhh
Q psy238          158 -PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       158 -~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                       .++.          ++++++ |..||.....+
T Consensus       172 ~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~  204 (254)
T cd05083         172 KKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLK  204 (254)
T ss_pred             CCcCchhhHHHHHHHHHHHHhCCCCCCccCCHH
Confidence             2222          688887 99999766543

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.93  E-value=9.5e-25  Score=176.50  Aligned_cols=163  Identities=13%  Similarity=0.169  Sum_probs=127.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHH---HHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQV---FENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~e---i~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|+.||+|.+....... ......+..|   +.++....||+|+.+++++....    .+|+||||++|++|..++.
T Consensus        15 ~~~~~~~vaiK~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~v~e~~~g~~L~~~l~   89 (278)
T cd05606          15 KADTGKMYAMKCLDKKRIKM-KQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD----KLSFILDLMNGGDLHYHLS   89 (278)
T ss_pred             EecCCCEEEEEEeecccccc-chhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCC----EEEEEEecCCCCcHHHHHH
Confidence            35678999999987532221 1111222233   34455568999999999887644    5899999999999999886


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCcccccc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATR  152 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~a  152 (218)
                      ..    ..+++..+..++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..      ....|+..|+|
T Consensus        90 ~~----~~l~~~~~~~~~~ql~~~l~~lH~--~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~a  163 (278)
T cd05606          90 QH----GVFSEAEMRFYAAEIILGLEHMHN--RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMA  163 (278)
T ss_pred             hc----CCCCHHHHHHHHHHHHHHHHHHHH--CCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCCcCcCCCcCCcC
Confidence            54    359999999999999999999999  7799999999999999999999999998764      34578999999


Q ss_pred             cccCC---CCch----------hhhhhhCCCCCCcc
Q psy238          153 QTYGR---PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       153 PE~~~---~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ||+..   .++.          ++++++|..||...
T Consensus       164 PE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~  199 (278)
T cd05606         164 PEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (278)
T ss_pred             cHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCC
Confidence            99732   2222          78999999999765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.93  E-value=8.8e-25  Score=180.74  Aligned_cols=167  Identities=19%  Similarity=0.189  Sum_probs=134.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++.....  .....+.+.+|+.++..++||||++++++|...+    .+|+||+|+.+++|.+++....
T Consensus        21 ~~~~~~~vaiK~~~~~~~--~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~----~~~~v~e~~~~~~l~~~l~~~~   94 (328)
T cd08226          21 HTPTGTLVTVRITDLENC--TEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGS----WLWVISPFMAYGSANSLLKTYF   94 (328)
T ss_pred             EcCCCcEEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCC----ceEEEEecccCCCHHHHHHhhc
Confidence            467899999999875422  2344578889999999999999999999997744    5899999999999999988754


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------------ccCCC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------------IENKK  146 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------------~~~~~  146 (218)
                      .  ..+++..+..++.|++.||.|||+  .+|+||||+|+|||++.++.++++||+.+..               ....+
T Consensus        95 ~--~~~~~~~~~~~~~qi~~aL~~lH~--~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (328)
T cd08226          95 P--EGMSEALIGNILFGALRGLNYLHQ--NGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTS  170 (328)
T ss_pred             c--cCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccC
Confidence            3  348999999999999999999999  6799999999999999999999999874322               01234


Q ss_pred             cccccccccCCC----Cch----------hhhhhhCCCCCCcchhh
Q psy238          147 YLSATRQTYGRP----ISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       147 t~~y~aPE~~~~----~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +..|+|||+...    ++.          ++++++|..||......
T Consensus       171 ~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~  216 (328)
T cd08226         171 VLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRT  216 (328)
T ss_pred             ccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChH
Confidence            567999997321    111          68999999999876543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=6.2e-25  Score=176.88  Aligned_cols=167  Identities=14%  Similarity=0.191  Sum_probs=132.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..||+|.+...   ........+.+|+.++..++||||+++++++....    ..++||||+++++|.+++......
T Consensus        34 ~~~~~~aik~~~~~---~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~l~~~~~~  106 (277)
T cd05032          34 EPETRVAIKTVNEN---ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ----PTLVVMELMAKGDLKSYLRSRRPE  106 (277)
T ss_pred             CcceeEEEEecCCc---cCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC----CcEEEEecCCCCCHHHHHHhcccc
Confidence            34578999998642   22344567889999999999999999999987653    589999999999999999764321


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCc
Q psy238           84 ------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKY  147 (218)
Q Consensus        84 ------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t  147 (218)
                            ...+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..          ....++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  184 (277)
T cd05032         107 AENNPGLGPPTLQKFIQMAAEIADGMAYLAA--KKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLP  184 (277)
T ss_pred             hhhccCCCCCCHHHHHHHHHHHHHHHHHHHh--CCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCcc
Confidence                  1236888999999999999999999  7799999999999999999999999998754          223456


Q ss_pred             ccccccccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          148 LSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       148 ~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ..|+|||..  ..++.          +++++| |..||.+...++
T Consensus       185 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~  229 (277)
T cd05032         185 VRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEE  229 (277)
T ss_pred             ccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHH
Confidence            789999962  22222          688888 899997655433

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG0662|consensus

Probab=99.93  E-value=4.6e-26  Score=167.86  Aligned_cols=154  Identities=18%  Similarity=0.277  Sum_probs=130.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+++.||+|.+...+  +........++||-+|+.+.|.|||+++++..+..    .+-+|++||. .+|..+.....
T Consensus        23 n~~t~eivalkrvrldd--ddegvpssalreicllkelkhknivrl~dvlhsdk----kltlvfe~cd-qdlkkyfdsln   95 (292)
T KOG0662|consen   23 NRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDK----KLTLVFEFCD-QDLKKYFDSLN   95 (292)
T ss_pred             cCCccceEEEEEEeccC--CCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCc----eeEEeHHHhh-HHHHHHHHhcC
Confidence            46789999999998763  33556678899999999999999999999875533    5899999995 79999988765


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         +.++...++.++.|++.||.|+|+  +++.||||||.|+||+.+|.++++|||+++.        .....|.+|.+|
T Consensus        96 ---g~~d~~~~rsfmlqllrgl~fchs--hnvlhrdlkpqnllin~ngelkladfglarafgipvrcysaevvtlwyrpp  170 (292)
T KOG0662|consen   96 ---GDLDPEIVRSFMLQLLRGLGFCHS--HNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPP  170 (292)
T ss_pred             ---CcCCHHHHHHHHHHHHhhhhhhhh--hhhhhccCCcceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCc
Confidence               459999999999999999999999  7799999999999999999999999999876        556779999999


Q ss_pred             cc--CC-CCchhhhhhh
Q psy238          154 TY--GR-PISGQYEIVT  167 (218)
Q Consensus       154 E~--~~-~~~~~~ei~t  167 (218)
                      .+  |. -++...+||+
T Consensus       171 dvlfgakly~tsidmws  187 (292)
T KOG0662|consen  171 DVLFGAKLYSTSIDMWS  187 (292)
T ss_pred             ceeeeeehhccchHhhh
Confidence            97  22 4555555554

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=9.3e-25  Score=174.61  Aligned_cols=161  Identities=19%  Similarity=0.234  Sum_probs=129.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|.+....     .....+.+|+.+++.++||||+++++++....    .+|+||||+++++|.+++....  .
T Consensus        29 ~~~~v~iK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~--~   97 (261)
T cd05068          29 NTTPVAVKTLKPGT-----MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEE----PIYIVTELMKYGSLLEYLQGGA--G   97 (261)
T ss_pred             CCeEEEEEeeCCCc-----ccHHHHHHHHHHHHHCCCCCccceeEEEecCC----CeeeeeecccCCcHHHHHhccC--C
Confidence            45679999987431     12456788999999999999999999886643    5899999999999999997653  2


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~  155 (218)
                      ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...         ....+..|+|||+
T Consensus        98 ~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  175 (261)
T cd05068          98 RALKLPQLIDMAAQVASGMAYLEA--QNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEA  175 (261)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccc
Confidence            458999999999999999999999  77999999999999999999999999988641         1122357999997


Q ss_pred             CC--CCch----------hhhhhh-CCCCCCcchhh
Q psy238          156 GR--PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       156 ~~--~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      ..  .++.          ++++++ |..||.+....
T Consensus       176 ~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~  211 (261)
T cd05068         176 ALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNA  211 (261)
T ss_pred             cccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence            32  2222          688888 99999765443

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.93  E-value=1e-24  Score=178.48  Aligned_cols=165  Identities=17%  Similarity=0.244  Sum_probs=128.8

Q ss_pred             CCCcE--EEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            4 EEGVE--VVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         4 ~~g~~--vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      .+|..  +|+|.+..   .........+.+|+.++..+ +||||+++++++...+    .+|+||||+++++|.+++...
T Consensus        30 ~~~~~~~~~ik~~~~---~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~  102 (303)
T cd05088          30 KDGLRMDAAIKRMKE---YASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG----YLYLAIEYAPHGNLLDFLRKS  102 (303)
T ss_pred             cCCceeeEEEEEecc---cCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC----CceEEEEeCCCCcHHHHHHhc
Confidence            45554  56666542   12234556788899999999 8999999999987644    589999999999999999765


Q ss_pred             cc------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------
Q psy238           81 KR------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------  141 (218)
Q Consensus        81 ~~------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------  141 (218)
                      ..            ....+++..++.++.|++.||.|||+  +|++||||+|+|||++.++.++|+|||++..       
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~--~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~  180 (303)
T cd05088         103 RVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK  180 (303)
T ss_pred             ccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHh--CCccccccchheEEecCCCcEEeCccccCcccchhhhc
Confidence            31            12358899999999999999999999  7799999999999999999999999998853       


Q ss_pred             ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          142 IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      .....+..|+|||+.  ..++.          +++++| |..||.....
T Consensus       181 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  229 (303)
T cd05088         181 TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC  229 (303)
T ss_pred             ccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh
Confidence            122335679999962  22221          789998 9999975543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.93  E-value=1.2e-24  Score=173.08  Aligned_cols=164  Identities=18%  Similarity=0.289  Sum_probs=134.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN-   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-   83 (218)
                      ++..||+|.+.....   ......+.+|+.++..++|+||+++++++...    ..+++||+|+++++|.+++...... 
T Consensus        22 ~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~   94 (262)
T cd00192          22 KTTEVAVKTLKEDAS---EEERKDFLKEARVMKKLGHPNVVRLLGVCTEE----EPLYLVLEYMEGGDLLDYLRKSRPVF   94 (262)
T ss_pred             CCceEEeEeeccccc---hhHHHHHHHHHHHHhhcCCCChheeeeeecCC----CceEEEEEeccCCcHHHHHhhccccc
Confidence            478899999985321   22467888999999999999999999998763    3589999999999999999875211 


Q ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCccc
Q psy238           84 ----VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLS  149 (218)
Q Consensus        84 ----~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~  149 (218)
                          ...+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+...          ...+++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~al~~lH~--~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~  172 (262)
T cd00192          95 PSPEKSTLSLKDLLSFAIQIAKGMEYLAS--KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIR  172 (262)
T ss_pred             cccccccCCHHHHHHHHHHHHHHHHHHHc--CCcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCcc
Confidence                2459999999999999999999999  77999999999999999999999999988752          3456788


Q ss_pred             ccccccCC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          150 ATRQTYGR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       150 y~aPE~~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      |+|||...  .++.          ++++++ |..||.....
T Consensus       173 y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  213 (262)
T cd00192         173 WMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN  213 (262)
T ss_pred             ccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCH
Confidence            99999732  2222          688888 6999987643

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.93  E-value=8e-25  Score=174.52  Aligned_cols=160  Identities=20%  Similarity=0.264  Sum_probs=129.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .|..||+|.+...      .....+.+|+.+++.++|||++++++++....   ..+++||||+++++|.+++.....  
T Consensus        28 ~~~~~~~k~~~~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~---~~~~lv~e~~~~~~L~~~~~~~~~--   96 (256)
T cd05082          28 RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK---GGLYIVTEYMAKGSLVDYLRSRGR--   96 (256)
T ss_pred             cCCcEEEEEeCCC------chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCC---CceEEEEECCCCCcHHHHHHhcCC--
Confidence            5778999988631      23456889999999999999999999765432   258999999999999999986532  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccCC--
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYGR--  157 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~~--  157 (218)
                      ..+++..++.++.|++.||.|||+  ++++|+||+|+||+++.++.++|+|||++..     ....++..|+|||+..  
T Consensus        97 ~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~  174 (256)
T cd05082          97 SVLGGDCLLKFSLDVCEAMEYLEA--NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK  174 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCEeccccchheEEEcCCCcEEecCCccceeccccCCCCccceeecCHHHHccC
Confidence            348899999999999999999999  7799999999999999999999999998775     2334466899999722  


Q ss_pred             CCch----------hhhhhh-CCCCCCcchh
Q psy238          158 PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       158 ~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      .++.          +|+|++ |..||.....
T Consensus       175 ~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~  205 (256)
T cd05082         175 KFSTKSDVWSFGILLWEIYSFGRVPYPRIPL  205 (256)
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCCCCCCCH
Confidence            2222          688887 9999875443

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=8.8e-25  Score=176.99  Aligned_cols=164  Identities=18%  Similarity=0.214  Sum_probs=132.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|.+...   ........+.+|+.++..++||||+++++++...+    .+++||||+++++|..++.... 
T Consensus        23 ~~~~~~~a~k~~~~~---~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~-   94 (286)
T cd06622          23 RPTGVTMAMKEIRLE---LDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEG----AVYMCMEYMDAGSLDKLYAGGV-   94 (286)
T ss_pred             cCCCcEEEEEEeecc---cCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCC----eEEEEEeecCCCCHHHHHHhcc-
Confidence            457899999988742   12334567889999999999999999999887643    6899999999999999887632 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCcccccccccC
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTYG  156 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~~  156 (218)
                      ....+++..+..++.|++.||.|||+. .+|+|+||+|+||+++.++.++|+|||++..      ....++..|+|||+.
T Consensus        95 ~~~~~~~~~~~~~~~~i~~~l~~LH~~-~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~  173 (286)
T cd06622          95 ATEGIPEDVLRRITYAVVKGLKFLKEE-HNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERI  173 (286)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhc-CCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCccccCCCccCccCcchh
Confidence            123589999999999999999999961 3599999999999999999999999998764      335678899999973


Q ss_pred             C--CC------c----------hhhhhhhCCCCCCcc
Q psy238          157 R--PI------S----------GQYEIVTKTNNVTEK  175 (218)
Q Consensus       157 ~--~~------~----------~~~ei~tg~~p~~~~  175 (218)
                      .  ..      +          .++++++|..||...
T Consensus       174 ~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  210 (286)
T cd06622         174 KSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPE  210 (286)
T ss_pred             cCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCc
Confidence            1  11      1          179999999999654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.93  E-value=1.4e-24  Score=175.61  Aligned_cols=166  Identities=17%  Similarity=0.149  Sum_probs=131.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      .++..||||.+...   ........+..|+.++..++||||+++++++....    .++++++|+++++|.+++..... 
T Consensus        33 ~~~~~vaiK~~~~~---~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~----~~~~~~e~~~~~~l~~~l~~~~~~  105 (283)
T cd05091          33 EQTQAVAIKTLKDK---AEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQ----PLSMIFSYCSHSDLHEFLVMRSPH  105 (283)
T ss_pred             CceeEEEEEEccCC---CCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCC----ceEEEEEcCCCCcHHHHHHhcCCC
Confidence            34678999998742   22345567889999999999999999999987654    48999999999999999864311 


Q ss_pred             -----------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------
Q psy238           83 -----------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------  141 (218)
Q Consensus        83 -----------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------  141 (218)
                                 ....+++..++.++.|++.||.|||+  ++|+||||+|+|||++.++.++|+|||++..          
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~--~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  183 (283)
T cd05091         106 SDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS--HHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLM  183 (283)
T ss_pred             ccccccccccccccccCHHHHHHHHHHHHHHHHHHHH--cCccccccchhheEecCCCceEecccccccccccchheeec
Confidence                       11347888999999999999999999  7799999999999999999999999998654          


Q ss_pred             ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          142 IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      ....+++.|+|||..  ..++.          ++++++ |..||.+....
T Consensus       184 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~  233 (283)
T cd05091         184 GNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ  233 (283)
T ss_pred             cCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            123346789999963  22222          689998 88888765443

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.93  E-value=5.7e-25  Score=176.16  Aligned_cols=164  Identities=18%  Similarity=0.286  Sum_probs=133.3

Q ss_pred             CCCCCcEEEEEEeecccccc--cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKN--FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~--~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||+|++.......  .......+.+|+.+++.++||||+++++++.+.+    .+++||+|+++++|.+++..
T Consensus        21 ~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~~v~e~~~~~~L~~~l~~   96 (268)
T cd06630          21 DVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDS----HFNLFVEWMAGGSVSHLLSK   96 (268)
T ss_pred             EcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCC----eEEEEEeccCCCcHHHHHHH
Confidence            45789999999997532211  1235678899999999999999999999987644    58999999999999999976


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-cEEEeecCccccc------------cCCC
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHTI------------ENKK  146 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~~------------~~~~  146 (218)
                      .    .++++..++.++.|++.||.|||+  .+++|+||+|+||+++.++ .++|+|||.+...            ...+
T Consensus        97 ~----~~~~~~~~~~~~~ql~~al~~LH~--~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  170 (268)
T cd06630          97 Y----GAFKEAVIINYTEQLLRGLSYLHE--NQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLG  170 (268)
T ss_pred             h----CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCcccccccc
Confidence            4    348999999999999999999999  7799999999999998775 6999999987541            2356


Q ss_pred             cccccccccCC--CCch----------hhhhhhCCCCCCcc
Q psy238          147 YLSATRQTYGR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       147 t~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      +..|+|||+..  ..+.          ++++++|..||...
T Consensus       171 ~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  211 (268)
T cd06630         171 TIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAE  211 (268)
T ss_pred             ccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            78999999732  2221          69999999999643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.93  E-value=9.3e-25  Score=174.88  Aligned_cols=163  Identities=19%  Similarity=0.307  Sum_probs=133.1

Q ss_pred             CCCcEEEEEEeecccc--cccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            4 EEGVEVVWNEVQFSER--KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~--~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      .+|..||+|.+.....  .........+.+|+.+++.++|+||+++++++.+..    .+++||||+++++|.+++... 
T Consensus        22 ~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   96 (265)
T cd06631          22 NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDN----TISIFMEFVPGGSISSILNRF-   96 (265)
T ss_pred             cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCC----eEEEEEecCCCCcHHHHHHhc-
Confidence            4688899999875321  112334456889999999999999999999987653    689999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------------ccCCCc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------------IENKKY  147 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------------~~~~~t  147 (218)
                         .+++...+..++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..              ....++
T Consensus        97 ---~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~  171 (265)
T cd06631          97 ---GPLPEPVFCKYTKQILDGVAYLHN--NCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGT  171 (265)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCC
Confidence               348899999999999999999999  7799999999999999999999999998753              134578


Q ss_pred             ccccccccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          148 LSATRQTYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       148 ~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ..|+|||+..  ..+.          ++++++|..||....
T Consensus       172 ~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~  212 (265)
T cd06631         172 PYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMD  212 (265)
T ss_pred             ccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCC
Confidence            8999999732  2221          689999999997653

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.8e-24  Score=173.53  Aligned_cols=169  Identities=17%  Similarity=0.250  Sum_probs=132.4

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ++..||+|.+...  .........+.+|+.+++.++||||+++++++.....  .....++||+|+++++|..++.....
T Consensus        26 ~~~~vaiK~~~~~--~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~  103 (273)
T cd05035          26 SQLKVAVKTMKLD--IHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRL  103 (273)
T ss_pred             CcceEEEEEeccC--cCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhc
Confidence            4578999998743  2224455678999999999999999999998765332  22347899999999999999865432


Q ss_pred             --cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccc
Q psy238           83 --NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSA  150 (218)
Q Consensus        83 --~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y  150 (218)
                        ....+++..+..++.|++.||.|||+  .+++|+||+|+||++++++.++|+|||++...          ....+..|
T Consensus       104 ~~~~~~~~~~~~~~~~~~i~~aL~~lH~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  181 (273)
T cd05035         104 GGLPEKLPLQTLLKFMVDIALGMEYLSN--RNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKW  181 (273)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHHHh--CCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccc
Confidence              22358999999999999999999999  77999999999999999999999999998751          12345689


Q ss_pred             cccccCC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          151 TRQTYGR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      +|||+..  .++.          ++++++ |..||.+...
T Consensus       182 ~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~  221 (273)
T cd05035         182 IAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN  221 (273)
T ss_pred             cCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH
Confidence            9999732  2222          688888 8899876543

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG0579|consensus

Probab=99.93  E-value=5.2e-26  Score=193.86  Aligned_cols=156  Identities=18%  Similarity=0.229  Sum_probs=132.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +.+++...|.|++.    .........++-||.||..+.||+||.|++.|...+    .+||+.|||.||.++.++-...
T Consensus        53 nket~~lAAaKvIe----tkseEELEDylVEIeILa~CdHP~ivkLl~ayy~en----kLwiliEFC~GGAVDaimlEL~  124 (1187)
T KOG0579|consen   53 NKETKLLAAAKVIE----TKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFEN----KLWILIEFCGGGAVDAIMLELG  124 (1187)
T ss_pred             cccchhhhhhhhhc----ccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccC----ceEEEEeecCCchHhHHHHHhc
Confidence            45666777888887    334567788999999999999999999999876644    5999999999999999887765


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         .++.++++..+++|++.||.|||+  ++|||||||..|||+.-+|.++|+|||.+..        .+..||+.||||
T Consensus       125 ---r~LtE~QIqvvc~q~ldALn~LHs--~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAP  199 (1187)
T KOG0579|consen  125 ---RVLTEDQIQVVCYQVLDALNWLHS--QNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAP  199 (1187)
T ss_pred             ---cccchHHHHHHHHHHHHHHHHHhh--cchhhhhccccceEEEecCcEeeecccccccchhHHhhhccccCCcccccc
Confidence               469999999999999999999999  7899999999999999999999999998854        678999999999


Q ss_pred             cc-------CCCCchhhhhhhCCC
Q psy238          154 TY-------GRPISGQYEIVTKTN  170 (218)
Q Consensus       154 E~-------~~~~~~~~ei~tg~~  170 (218)
                      |+       ..|++...|||+-..
T Consensus       200 EVvmCET~KD~PYDykaDiWSlGI  223 (1187)
T KOG0579|consen  200 EVVMCETFKDQPYDYKADIWSLGI  223 (1187)
T ss_pred             hheeeccccCCCchhhhhHHhhhh
Confidence            97       236666666666443

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.93  E-value=1.4e-24  Score=177.51  Aligned_cols=166  Identities=18%  Similarity=0.249  Sum_probs=130.9

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      ++..||+|.+...   ........+.+|+.++..+ .||||+++++++....    .+++||||+++++|.+++......
T Consensus        46 ~~~~v~iK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~  118 (304)
T cd05101          46 EAVTVAVKMLKDD---ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG----PLYVIVEYASKGNLREYLRARRPP  118 (304)
T ss_pred             cceeEEeeecccc---cchHHHHHHHHHHHHHHhhccCCCchheeEEEecCC----ceEEEEecCCCCcHHHHHHhcCCc
Confidence            4557999988632   2234556788999999999 8999999999987644    589999999999999999864321


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------
Q psy238           84 ------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------  141 (218)
Q Consensus        84 ------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------  141 (218)
                                  ...+++..+..++.|++.||.|||+  +|++|+||+|+|||++.++.++|+|||++..          
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~--~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~  196 (304)
T cd05101         119 GMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS--QKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKT  196 (304)
T ss_pred             ccccccccccCCcccccHHHHHHHHHHHHHHHHHHHH--CCeeecccccceEEEcCCCcEEECCCccceecccccccccc
Confidence                        1247888899999999999999999  7799999999999999999999999998764          


Q ss_pred             ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          142 IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ....++..|+|||+.  ..++.          ++++++ |..||.+...++
T Consensus       197 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~  247 (304)
T cd05101         197 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE  247 (304)
T ss_pred             cCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH
Confidence            123345679999963  22222          678887 788887655443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.93  E-value=1.3e-24  Score=180.81  Aligned_cols=166  Identities=19%  Similarity=0.237  Sum_probs=130.0

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+++.||||++...   ........+.+|+.++..+ +||||+++++++...+   ..+++||||+++++|.+++....
T Consensus        34 ~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~---~~~~lv~ey~~~g~L~~~i~~~~  107 (343)
T cd05103          34 TATCRTVAVKMLKEG---ATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG---GPLMVIVEFCKFGNLSNYLRSKR  107 (343)
T ss_pred             cccceeEEEEEeccC---CChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC---CceEEEEeccCCCcHHHHHHhcC
Confidence            457889999999742   1233456788999999999 7899999999886543   35799999999999999987532


Q ss_pred             cc---------------------------------------------------------------CCCCCHHHHHHHHHH
Q psy238           82 RN---------------------------------------------------------------VKKLPLSAWKRWCSQ   98 (218)
Q Consensus        82 ~~---------------------------------------------------------------~~~~~~~~~~~~~~q   98 (218)
                      ..                                                               ...+++..+..++.|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q  187 (343)
T cd05103         108 GEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQ  187 (343)
T ss_pred             CccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHH
Confidence            10                                                               023678888999999


Q ss_pred             HHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccccccC--CCCch-----
Q psy238           99 ILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATRQTYG--RPISG-----  161 (218)
Q Consensus        99 i~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~aPE~~--~~~~~-----  161 (218)
                      ++.||.|||+  .+|+||||+|+|||++.++.++|+|||++...          ...+++.|+|||+.  ..++.     
T Consensus       188 i~~al~~lH~--~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  265 (343)
T cd05103         188 VAKGMEFLAS--RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVW  265 (343)
T ss_pred             HHHHHHHHHh--CCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHH
Confidence            9999999999  77999999999999999999999999987641          22345679999962  22222     


Q ss_pred             -----hhhhhh-CCCCCCcch
Q psy238          162 -----QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       162 -----~~ei~t-g~~p~~~~~  176 (218)
                           ++++++ |..||....
T Consensus       266 slG~~l~el~~~g~~p~~~~~  286 (343)
T cd05103         266 SFGVLLWEIFSLGASPYPGVK  286 (343)
T ss_pred             HHHHHHHHHHHCCCCCCCCcc
Confidence                 678886 899987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=7.1e-25  Score=176.49  Aligned_cols=161  Identities=20%  Similarity=0.214  Sum_probs=134.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....   .......+.+|+.+++.++||||+++++++.+..    .+|+|+||+++++|.+++... 
T Consensus        22 ~~~~~~~~~ik~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~~~~~-   93 (274)
T cd06609          22 DKRTNQVVAIKVIDLEE---AEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGS----KLWIIMEYCGGGSCLDLLKPG-   93 (274)
T ss_pred             ECCCCeEEEEEEeeccc---cchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECC----eEEEEEEeeCCCcHHHHHhhc-
Confidence            45688999999997532   2344566789999999999999999999887643    689999999999999998753 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          ++++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        94 ----~~~~~~~~~~~~ql~~~l~~lh~--~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~P  167 (274)
T cd06609          94 ----KLDETYIAFILREVLLGLEYLHE--EGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAP  167 (274)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCCccccCh
Confidence                48999999999999999999999  7799999999999999999999999998765        234567889999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  .++.          ++++++|..||....
T Consensus       168 E~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~  202 (274)
T cd06609         168 EVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLH  202 (274)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCc
Confidence            9732  2222          689999999997543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.93  E-value=2.3e-24  Score=172.85  Aligned_cols=162  Identities=20%  Similarity=0.306  Sum_probs=131.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +...||||.+...   ........+.+|+.++..++||||+++++++....    ..++||||+++++|.+++....   
T Consensus        31 ~~~~vaik~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~iv~e~~~~~~L~~~~~~~~---  100 (266)
T cd05033          31 KEIDVAIKTLKAG---SSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSR----PVMIITEYMENGSLDKFLREND---  100 (266)
T ss_pred             CcceEEEEEcCCC---CChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCC----ceEEEEEcCCCCCHHHHHHhcc---
Confidence            3457999988642   22445567888999999999999999999887644    4899999999999999997643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATRQT  154 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~aPE  154 (218)
                      ..+++..++.++.|++.||.|||+  ++|+|+||+|+|||++.++.++|+|||++...          ...++..|+|||
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~Lh~--~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe  178 (266)
T cd05033         101 GKFTVGQLVGMLRGIASGMKYLSE--MNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPE  178 (266)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChh
Confidence            358999999999999999999999  77999999999999999999999999988752          123456899999


Q ss_pred             cCC--CCch----------hhhhhh-CCCCCCcchhh
Q psy238          155 YGR--PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      ...  .++.          ++++++ |..||.....+
T Consensus       179 ~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~  215 (266)
T cd05033         179 AIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQ  215 (266)
T ss_pred             hhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHH
Confidence            732  2221          688887 99999765543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.93  E-value=1.5e-24  Score=174.45  Aligned_cols=164  Identities=17%  Similarity=0.256  Sum_probs=128.8

Q ss_pred             CCCc--EEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            4 EEGV--EVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         4 ~~g~--~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      .+|.  .+|+|.+..   .........+..|+.++..+ +||||+++++++...+    .+++||||+++++|.+++...
T Consensus        18 ~~~~~~~~~~k~~~~---~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~~~   90 (270)
T cd05047          18 KDGLRMDAAIKRMKE---YASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG----YLYLAIEYAPHGNLLDFLRKS   90 (270)
T ss_pred             CCCCeeEEEEEEccc---cCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCC----CceEEEEeCCCCcHHHHHHhc
Confidence            4454  468887762   12234556788999999999 8999999999987644    489999999999999999764


Q ss_pred             cc------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------
Q psy238           81 KR------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------  141 (218)
Q Consensus        81 ~~------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------  141 (218)
                      ..            ....+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..       
T Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~--~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~~  168 (270)
T cd05047          91 RVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK  168 (270)
T ss_pred             cccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH--CCEeecccccceEEEcCCCeEEECCCCCccccchhhhc
Confidence            31            11247899999999999999999999  7799999999999999999999999998753       


Q ss_pred             ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcch
Q psy238          142 IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~  176 (218)
                      .....+..|+|||+.  ..++.          +++|++ |..||.+..
T Consensus       169 ~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~  216 (270)
T cd05047         169 TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT  216 (270)
T ss_pred             cCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccC
Confidence            223335679999972  22222          688987 999997654

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.93  E-value=2e-24  Score=171.43  Aligned_cols=163  Identities=18%  Similarity=0.216  Sum_probs=131.1

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..||+|.+...   ........+.+|+.++..++||||+++++++....    ..++||||+++++|.+++....  
T Consensus        17 ~~~~~~a~K~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~--   87 (250)
T cd05085          17 KDKTPVAVKTCKED---LPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQ----PIYIVMELVPGGDFLSFLRKKK--   87 (250)
T ss_pred             cCCcEEEEEecCCc---CCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCC----ccEEEEECCCCCcHHHHHHhcC--
Confidence            35778999988732   22344557889999999999999999999987654    4899999999999999987543  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQT  154 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE  154 (218)
                       ..+++..+..++.|++.||.|||+  ++++|+||+|+||+++.++.++|+|||++..         ....+++.|+|||
T Consensus        88 -~~~~~~~~~~~~~~i~~~l~~lH~--~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE  164 (250)
T cd05085          88 -DELKTKQLVKFALDAAAGMAYLES--KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPE  164 (250)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHh--CCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHH
Confidence             347899999999999999999999  7799999999999999999999999998864         1223356799999


Q ss_pred             cCC--CCch----------hhhhhh-CCCCCCcchhh
Q psy238          155 YGR--PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      +..  .++.          ++++++ |..||......
T Consensus       165 ~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~  201 (250)
T cd05085         165 ALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQ  201 (250)
T ss_pred             HhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHH
Confidence            732  2222          688887 99999765443

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.93  E-value=1.9e-24  Score=183.36  Aligned_cols=165  Identities=20%  Similarity=0.232  Sum_probs=130.1

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .++..||+|++...   ......+.+.+|+.+|..+. ||||+++++++....    .+++||||+++|+|.+++.....
T Consensus        65 ~~~~~vavK~l~~~---~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~----~~~iv~E~~~~g~L~~~l~~~~~  137 (401)
T cd05107          65 QSTMKVAVKMLKST---ARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGG----PIYIITEYCRYGDLVDYLHRNKH  137 (401)
T ss_pred             CCceEEEEEecCCC---CChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCC----CcEEEEeccCCCcHHHHHHhccc
Confidence            45678999999743   12334457889999999997 999999999987644    58999999999999999975421


Q ss_pred             --------------------------------------------------------------------------------
Q psy238           83 --------------------------------------------------------------------------------   82 (218)
Q Consensus        83 --------------------------------------------------------------------------------   82 (218)
                                                                                                      
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (401)
T cd05107         138 TFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYL  217 (401)
T ss_pred             cchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhh
Confidence                                                                                            


Q ss_pred             --------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc------
Q psy238           83 --------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI------  142 (218)
Q Consensus        83 --------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~------  142 (218)
                                    ....+++..++.++.|++.||.|||+  .+++||||+|+|||++.++.++|+|||++...      
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~--~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~  295 (401)
T cd05107         218 PSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLAS--KNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNY  295 (401)
T ss_pred             cccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhc--CCcCcccCCcceEEEeCCCEEEEEecCcceeccccccc
Confidence                          11236777889999999999999999  77999999999999999999999999998641      


Q ss_pred             ----cCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          143 ----ENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       143 ----~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                          ...++..|+|||+.  ..++.          ++++++ |..||.....
T Consensus       296 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~  347 (401)
T cd05107         296 ISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPM  347 (401)
T ss_pred             ccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence                23456789999963  22222          678887 8899976543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.93  E-value=1.2e-24  Score=178.02  Aligned_cols=162  Identities=20%  Similarity=0.270  Sum_probs=130.6

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .++..||||.+...   ........+.+|+.+++.+ +||||+++++++...+    .+++||||+++++|.+++.....
T Consensus        63 ~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~~~~~  135 (302)
T cd05055          63 DAVMKVAVKMLKPT---AHSSEREALMSELKIMSHLGNHENIVNLLGACTIGG----PILVITEYCCYGDLLNFLRRKRE  135 (302)
T ss_pred             CceeEEEEEecCcc---CChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCC----ceEEEEEcCCCCcHHHHHHhCCC
Confidence            34568999988742   1234456788999999999 7999999999987654    48999999999999999976432


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATR  152 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~a  152 (218)
                        ..+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++++|||++...          ...++..|+|
T Consensus       136 --~~l~~~~~~~i~~~i~~~l~~lH~--~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  211 (302)
T cd05055         136 --SFLTLEDLLSFSYQVAKGMAFLAS--KNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMA  211 (302)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCC
Confidence              338999999999999999999999  77999999999999999999999999988641          1234577999


Q ss_pred             cccC--CCCch----------hhhhhh-CCCCCCcch
Q psy238          153 QTYG--RPISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~t-g~~p~~~~~  176 (218)
                      ||..  ..++.          ++++++ |..||....
T Consensus       212 PE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~  248 (302)
T cd05055         212 PESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP  248 (302)
T ss_pred             HhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCC
Confidence            9962  22222          688887 999987544

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.93  E-value=1.2e-24  Score=176.69  Aligned_cols=169  Identities=17%  Similarity=0.156  Sum_probs=134.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||+|++...     ......+.+|+.++..+ .|||++++++++..... ....+++||||+++++|.+++..
T Consensus        43 ~~~~~~~~aik~~~~~-----~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~  117 (291)
T cd06639          43 NKKDGSLAAVKILDPI-----SDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKG  117 (291)
T ss_pred             ECCCCCEEEEEEeccc-----ccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHH
Confidence            3467899999998632     12335567888899988 89999999999875432 23568999999999999999875


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSAT  151 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~  151 (218)
                      .......+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~qi~~al~~lH~--~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~  195 (291)
T cd06639         118 LLICGQRLDEAMISYILYGALLGLQHLHN--NRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWM  195 (291)
T ss_pred             hhhcCCCCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCHHHEEEcCCCCEEEeecccchhcccccccccCccCCcccc
Confidence            43333568999999999999999999999  6799999999999999999999999998764        2346788999


Q ss_pred             ccccCCC-------Cch----------hhhhhhCCCCCCcchh
Q psy238          152 RQTYGRP-------ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       152 aPE~~~~-------~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |||+...       ++.          ++++++|+.||.....
T Consensus       196 aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~  238 (291)
T cd06639         196 APEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHP  238 (291)
T ss_pred             ChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcH
Confidence            9996210       111          6899999999976543

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.93  E-value=2.2e-25  Score=180.27  Aligned_cols=162  Identities=17%  Similarity=0.214  Sum_probs=130.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+.....  .......+.+|+.+++.++||||+++++++.+..    .+++|+||++ ++|.+++....
T Consensus        21 ~~~~g~~~~~k~~~~~~~--~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~   93 (284)
T cd07839          21 NRETHEIVALKRVRLDDD--DEGVPSSALREICLLKELKHKNIVRLYDVLHSDK----KLTLVFEYCD-QDLKKYFDSCN   93 (284)
T ss_pred             ECCCCcEEEEEEeecccc--cccCccchhHHHHHHHhcCCCCeeeHHHHhccCC----ceEEEEecCC-CCHHHHHHhcC
Confidence            456899999999975321  1223356778999999999999999999987644    5899999996 68888876542


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.||+.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        94 ---~~~~~~~~~~~~~qi~~al~~LH~--~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  168 (284)
T cd07839          94 ---GDIDPEIVKSFMFQLLKGLAFCHS--HNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPP  168 (284)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcCh
Confidence               358999999999999999999999  7799999999999999999999999998764        234568899999


Q ss_pred             ccC--C-CCch----------hhhhhhCCCCCCcc
Q psy238          154 TYG--R-PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~--~-~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+.  . .++.          +++|++|..|+...
T Consensus       169 E~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~  203 (284)
T cd07839         169 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG  203 (284)
T ss_pred             HHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCC
Confidence            962  2 1222          68899999997543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.93  E-value=1.4e-24  Score=174.23  Aligned_cols=161  Identities=20%  Similarity=0.212  Sum_probs=131.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..||+|.+...    .......+.+|+.+++.++||||+++++++...+    .+++||||+++++|.+++....
T Consensus        29 ~~~~~~~v~~k~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  100 (268)
T cd06624          29 DLSTQVRIAIKEIPER----DSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENG----FFKIFMEQVPGGSLSALLRSKW  100 (268)
T ss_pred             ecCCCcEEEEEEecCC----CHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCC----EEEEEEecCCCCCHHHHHHHhc
Confidence            4567889999988742    2345567889999999999999999999987643    6899999999999999998643


Q ss_pred             ccCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-CCcEEEeecCcccc--------ccCCCcccc
Q psy238           82 RNVKKL--PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~--~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                         .++  +...+..++.|++.||.|||+  .+|+|+||+|+||+++. ++.++|+|||.+..        ....++..|
T Consensus       101 ---~~~~~~~~~~~~~~~qi~~al~~lH~--~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  175 (268)
T cd06624         101 ---GPLKDNEQTIIFYTKQILEGLKYLHD--NQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQY  175 (268)
T ss_pred             ---ccCCCcHHHHHHHHHHHHHHHHHHHH--CCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccc
Confidence               224  788899999999999999999  77999999999999976 67999999998754        234578899


Q ss_pred             cccccCCC----Cch----------hhhhhhCCCCCCcc
Q psy238          151 TRQTYGRP----ISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       151 ~aPE~~~~----~~~----------~~ei~tg~~p~~~~  175 (218)
                      +|||+...    ++.          ++++++|..||.+.
T Consensus       176 ~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~  214 (268)
T cd06624         176 MAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIEL  214 (268)
T ss_pred             cChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccc
Confidence            99997321    111          68999999999754

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.93  E-value=4.3e-25  Score=178.54  Aligned_cols=165  Identities=19%  Similarity=0.292  Sum_probs=133.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+....  ........+.+|+.+++.++||||+++++++.+..    .+++||||+. ++|..++....
T Consensus        21 ~~~~~~~~~ik~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~-~~l~~~~~~~~   93 (284)
T cd07860          21 NKLTGEVVALKKIRLDT--ETEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN----KLYLVFEFLH-QDLKKFMDASP   93 (284)
T ss_pred             ECCCCCEEEEEEccccc--cccccchHHHHHHHHHHhcCCCCCcchhhhcccCC----cEEEEeeccc-cCHHHHHHhCC
Confidence            45688999999887532  11233457888999999999999999999986543    5899999995 68999887653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .  ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        94 ~--~~l~~~~~~~~~~~i~~~l~~lh~--~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  169 (284)
T cd07860          94 L--SGIPLPLIKSYLFQLLQGLAFCHS--HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP  169 (284)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEECCCCCEEEeeccchhhcccCccccccccccccccCC
Confidence            2  458999999999999999999999  7799999999999999999999999998764        223457889999


Q ss_pred             ccCC--C-Cch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR--P-ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~--~-~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..  . .+.          +++++||..||.+...
T Consensus       170 E~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~  206 (284)
T cd07860         170 EILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE  206 (284)
T ss_pred             eEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            9622  2 122          6899999999976543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.93  E-value=5.4e-25  Score=178.66  Aligned_cols=162  Identities=19%  Similarity=0.252  Sum_probs=130.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+.....   ......+.+|+.+++.++||||+++++++.+..    ..++||||+. ++|.+++....
T Consensus        26 ~~~~~~~~~iK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~-~~L~~~~~~~~   97 (291)
T cd07844          26 SKLTGQLVALKEIRLEHE---EGAPFTAIREASLLKDLKHANIVTLHDIIHTKK----TLTLVFEYLD-TDLKQYMDDCG   97 (291)
T ss_pred             EcCCCcEEEEEEEecccc---cCCchhHHHHHHHHhhCCCcceeeEEEEEecCC----eEEEEEecCC-CCHHHHHHhCC
Confidence            345789999999874321   112234678999999999999999999987643    6899999997 59999887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....++..|+||
T Consensus        98 ---~~~~~~~~~~~~~ql~~al~~lH~--~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aP  172 (291)
T cd07844          98 ---GGLSMHNVRLFLFQLLRGLAYCHQ--RRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPP  172 (291)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeecccCCHHHEEEcCCCCEEECccccccccCCCCccccccccccccCCc
Confidence               358999999999999999999999  7799999999999999999999999998764        123457889999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..   .++.          +++|++|..||....
T Consensus       173 E~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~  208 (291)
T cd07844         173 DVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGST  208 (291)
T ss_pred             HHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence            9632   2222          789999999997554

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.93  E-value=2.7e-24  Score=172.88  Aligned_cols=161  Identities=17%  Similarity=0.232  Sum_probs=125.9

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      .+++|.+...   ........+.+|+.++..++||||+++++.+....    ..|+||||+++++|.+++.........+
T Consensus        24 ~~~~k~~~~~---~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~~~~~   96 (268)
T cd05086          24 RVVVKELKAN---ASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAI----PYLLVFEYCELGDLKSYLSQEQWHRRNS   96 (268)
T ss_pred             eEEEEEecCC---CChHHHHHHHHHHHHHhccCCcchhheEEEecCCC----ccEEEEecCCCCcHHHHHHhhhcccccc
Confidence            4566665532   22345668899999999999999999999987654    4899999999999999998754333457


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccccccCC
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTYGR  157 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~~~  157 (218)
                      +...++.++.||+.||.|||+  .+++|+||+|+|||++.++.++|+|||++..          ....++..|+|||+..
T Consensus        97 ~~~~~~~~~~~i~~al~~lH~--~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  174 (268)
T cd05086          97 QLLLLQRMACEIAAGVTHMHK--HNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVG  174 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH--CCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcc
Confidence            778889999999999999999  6799999999999999999999999998753          2335678999999732


Q ss_pred             C---------Cch----------hhhhhh-CCCCCCcchh
Q psy238          158 P---------ISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       158 ~---------~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      .         .+.          +++|++ |..||.....
T Consensus       175 ~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~  214 (268)
T cd05086         175 EFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSD  214 (268)
T ss_pred             cccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCH
Confidence            1         111          578876 4667765443

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=1.2e-24  Score=176.14  Aligned_cols=164  Identities=14%  Similarity=0.192  Sum_probs=135.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|++...   ........+.+|++++..++||||+++++++....    .+++||||+++++|.+++...  
T Consensus        27 ~~~~~~~a~k~~~~~---~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~--   97 (284)
T cd06620          27 IPTGTVMAKKVVHIG---AKSSVRKQILRELQIMHECRSPYIVSFYGAFLNEN----NICMCMEFMDCGSLDRIYKKG--   97 (284)
T ss_pred             cCCCcEEEEEEEEec---CcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCC----EEEEEEecCCCCCHHHHHHhc--
Confidence            457899999988743   22445677899999999999999999999987753    689999999999999988764  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCcccccccccC
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTYG  156 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~~  156 (218)
                        +++++..+..++.+++.||.|||+. .+++|+||+|+||+++.++.++|+|||++..      ....++..|+|||+.
T Consensus        98 --~~~~~~~~~~~~~~i~~~l~~LH~~-~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~  174 (284)
T cd06620          98 --GPIPVEILGKIAVAVVEGLTYLYNV-HRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERI  174 (284)
T ss_pred             --cCCCHHHHHHHHHHHHHHHHHHHHh-cCeeccCCCHHHEEECCCCcEEEccCCcccchhhhccCccccCcccCCHHHH
Confidence              3489999999999999999999972 3599999999999999999999999998754      335789999999972


Q ss_pred             --CCCch----------hhhhhhCCCCCCcchhh
Q psy238          157 --RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       157 --~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                        ..++.          ++++++|..||......
T Consensus       175 ~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~  208 (284)
T cd06620         175 QGGKYTVKSDVWSLGISIIELALGKFPFAFSNID  208 (284)
T ss_pred             ccCCCCccchHHHHHHHHHHHHhCCCCCcccchh
Confidence              22221          68999999999865543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.93  E-value=1.7e-24  Score=175.06  Aligned_cols=158  Identities=17%  Similarity=0.274  Sum_probs=126.3

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      .||+|.+..   .........+..|+.++..+.||||+++++++...     ..+++++|+++++|.+++....   ..+
T Consensus        38 ~~~~k~~~~---~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~-----~~~~i~e~~~~gsL~~~l~~~~---~~~  106 (279)
T cd05111          38 PVAIKTIQD---RSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGA-----SLQLVTQLSPLGSLLDHVRQHR---DSL  106 (279)
T ss_pred             EEEEeeccc---ccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCC-----ccEEEEEeCCCCcHHHHHHhcc---cCC
Confidence            477777753   22233445677888889999999999999987532     3789999999999999997643   358


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccccccC-
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTYG-  156 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~~-  156 (218)
                      ++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||.+..          ....++..|+|||+. 
T Consensus       107 ~~~~~~~i~~qi~~~l~~lH~--~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~  184 (279)
T cd05111         107 DPQRLLNWCVQIAKGMYYLEE--HRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESIL  184 (279)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH--CCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhc
Confidence            999999999999999999999  7799999999999999999999999998864          123456789999973 


Q ss_pred             -CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          157 -RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       157 -~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                       ..++.          +|++++ |..||.+....
T Consensus       185 ~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~  218 (279)
T cd05111         185 FGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPH  218 (279)
T ss_pred             cCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence             22322          688998 99999776443

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.93  E-value=1e-24  Score=173.99  Aligned_cols=160  Identities=20%  Similarity=0.305  Sum_probs=127.5

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..+|+|.+....     .....+.+|+.+++.++||||+++++++...+    ..|+||||+++++|.+++....   
T Consensus        27 ~~~~~~iK~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~---   94 (256)
T cd05059          27 GKIDVAIKMIREGA-----MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQR----PIFIVTEYMANGCLLNYLRERK---   94 (256)
T ss_pred             CCccEEEEEeccCC-----CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC----ceEEEEecCCCCCHHHHHHhcc---
Confidence            45679999886321     12345778999999999999999999886543    5899999999999999997643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...         ...++..|+|||+
T Consensus        95 ~~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~  172 (256)
T cd05059          95 GKLGTEWLLDMCSDVCEAMEYLES--NGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEV  172 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH--CCcccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHH
Confidence            358999999999999999999999  77999999999999999999999999987641         1223457999997


Q ss_pred             C--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          156 G--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       156 ~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      .  ..++.          ++++++ |..||......
T Consensus       173 ~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~  208 (256)
T cd05059         173 FDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNS  208 (256)
T ss_pred             hccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHH
Confidence            3  23322          688888 89999765443

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.93  E-value=1.8e-24  Score=175.70  Aligned_cols=166  Identities=16%  Similarity=0.228  Sum_probs=131.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc--
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK--   81 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--   81 (218)
                      .+..||+|.+...   ........+.+|+.++..+ .||||+++++++...+    .++++|||+++++|..++....  
T Consensus        41 ~~~~~a~k~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~----~~~li~e~~~~~~L~~~l~~~~~~  113 (293)
T cd05053          41 ETSTVAVKMLKDD---ATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG----PLYVVVEYAAHGNLRDFLRARRPP  113 (293)
T ss_pred             CceeEEEEEccCC---CCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC----CeEEEEEeCCCCcHHHHHHhcCCC
Confidence            3467999988742   2233456688999999999 7999999999987644    4899999999999999997532  


Q ss_pred             ----------ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------
Q psy238           82 ----------RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------  141 (218)
Q Consensus        82 ----------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------  141 (218)
                                .....+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..          
T Consensus       114 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~--~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~  191 (293)
T cd05053         114 GEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS--KKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKT  191 (293)
T ss_pred             ccccccccccccccccCHHHHHHHHHHHHHHHHHHHH--CCccccccceeeEEEcCCCeEEeCccccccccccccceecc
Confidence                      123458899999999999999999999  7799999999999999999999999998864          


Q ss_pred             ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          142 IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ....++..|+|||+.  ..++.          ++++++ |..||.....++
T Consensus       192 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~  242 (293)
T cd05053         192 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE  242 (293)
T ss_pred             CCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHH
Confidence            122345679999962  22211          688887 999997665443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.3e-24  Score=173.44  Aligned_cols=158  Identities=20%  Similarity=0.295  Sum_probs=128.6

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||+|.+.....   ......+.+|+.+++.+.||||+++++++...     .+++||+|+++++|.+++....    
T Consensus        23 ~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~v~e~~~~~~L~~~l~~~~----   90 (257)
T cd05060          23 EVEVAVKTLKQEHI---AAGKKEFLREASVMAQLDHPCIVRLIGVCKGE-----PLMLVMELAPLGPLLKYLKKRR----   90 (257)
T ss_pred             cceEEEEecccccc---hHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCC-----ceEEEEEeCCCCcHHHHHHhCC----
Confidence            47899999875322   24556788999999999999999999987542     4799999999999999998653    


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------cCCCcccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------ENKKYLSATRQT  154 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------~~~~t~~y~aPE  154 (218)
                      .+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...           ...++..|+|||
T Consensus        91 ~~~~~~~~~~~~qi~~~l~~lh~--~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  168 (257)
T cd05060          91 EIPVSDLKELAHQVAMGMAYLES--KHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPE  168 (257)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhh--cCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHH
Confidence            48999999999999999999999  77999999999999999999999999987641           122245799999


Q ss_pred             cCC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          155 YGR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      +..  .++.          ++++++ |..||.....
T Consensus       169 ~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~  204 (257)
T cd05060         169 CINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG  204 (257)
T ss_pred             HhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH
Confidence            622  2221          789998 9999976543

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.93  E-value=8.3e-25  Score=174.41  Aligned_cols=164  Identities=21%  Similarity=0.234  Sum_probs=134.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|++..... ........+.+|+.++..++||||+++++.+...    ..+|+||+|+++++|.+++.... 
T Consensus        15 ~~~~~~~~~k~~~~~~~-~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~-   88 (265)
T cd05579          15 KSTGDIYAIKVIKKADM-IRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGK----KNLYLVMEYLPGGDLASLLENVG-   88 (265)
T ss_pred             CCCCCEEEEEEecchhh-hhhhHHHHHHHHHHHHHhCCCcchhHHHHheecC----cEEEEEEecCCCCcHHHHHHHcC-
Confidence            45789999999874322 1235567888999999999999999999887653    36899999999999999998653 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------------cCCC
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------------ENKK  146 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------------~~~~  146 (218)
                         .+++..++.++.||+.||.|||+  .+++|+||+|+||+++.++.++|+|||++...                ...+
T Consensus        89 ---~~~~~~~~~i~~qi~~~L~~lH~--~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  163 (265)
T cd05579          89 ---SLDEDVARIYIAEIVLALEYLHS--NGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVG  163 (265)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHH--cCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCccc
Confidence               48999999999999999999999  77999999999999999999999999987641                2346


Q ss_pred             cccccccccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          147 YLSATRQTYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       147 t~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +..|+|||+..  ..+.          ++++++|..||.....
T Consensus       164 ~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~  206 (265)
T cd05579         164 TPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP  206 (265)
T ss_pred             CccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            78899999632  1111          6899999999976553

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.93  E-value=1.9e-24  Score=172.23  Aligned_cols=160  Identities=19%  Similarity=0.235  Sum_probs=131.9

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||.+.....   ......+.+|+.+++.++||||+++++++.. .    .+++||||+++++|.+++.....  ..
T Consensus        24 ~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~----~~~~v~e~~~~~~L~~~l~~~~~--~~   93 (257)
T cd05040          24 IPVAVKCLKSDKL---SDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-H----PLMMVTELAPLGSLLDRLRKDAL--GH   93 (257)
T ss_pred             eEEEEeecCCccc---HHHHHHHHHHHHHHhhcCCCCccceeEEEcC-C----eEEEEEEecCCCcHHHHHHhccc--cc
Confidence            3699999874321   1567788999999999999999999999876 2    58999999999999999987542  45


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------cCCCccccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------ENKKYLSATRQTY  155 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------~~~~t~~y~aPE~  155 (218)
                      +++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...           ...++..|+|||+
T Consensus        94 ~~~~~~~~~~~qi~~~L~~lH~--~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~  171 (257)
T cd05040          94 FLISTLCDYAVQIANGMRYLES--KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPES  171 (257)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHh--CCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHH
Confidence            8999999999999999999999  77999999999999999999999999987652           2346778999996


Q ss_pred             CC--CCch----------hhhhhh-CCCCCCcchhh
Q psy238          156 GR--PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       156 ~~--~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      ..  .++.          +++|++ |..||......
T Consensus       172 ~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~  207 (257)
T cd05040         172 LRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGS  207 (257)
T ss_pred             hcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHH
Confidence            32  2222          688888 99999755443

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.93  E-value=9.9e-25  Score=174.23  Aligned_cols=159  Identities=20%  Similarity=0.266  Sum_probs=130.7

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||+|.+...    .......+..|+.++..++||||+++++++.+..    .+++||||+++++|.+++.....  .
T Consensus        30 ~~~~~~k~~~~~----~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~~--~   99 (261)
T cd05148          30 RVRVAIKILKSD----DLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGE----PVYIITELMEKGSLLAFLRSPEG--Q   99 (261)
T ss_pred             CCcEEEEecccc----chhhHHHHHHHHHHHhcCCCcchhheeeeEecCC----CeEEEEeecccCCHHHHHhcCCC--C
Confidence            678999998742    2334556888999999999999999999987654    58999999999999999986532  4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccccC-
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQTYG-  156 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE~~-  156 (218)
                      .+++..++.++.|++.||.|||+  ++++|+||+|+||+++.++.++|+|||++..        ....++..|+|||.. 
T Consensus       100 ~~~~~~~~~~~~~i~~al~~lH~--~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~  177 (261)
T cd05148         100 VLPVASLIDMACQVAEGMAYLEE--QNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAAS  177 (261)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH--CCeeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHc
Confidence            58999999999999999999999  7799999999999999999999999998864        222446789999973 


Q ss_pred             -CCCch----------hhhhhh-CCCCCCcch
Q psy238          157 -RPISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       157 -~~~~~----------~~ei~t-g~~p~~~~~  176 (218)
                       ..++.          ++++++ |..||....
T Consensus       178 ~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~  209 (261)
T cd05148         178 HGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN  209 (261)
T ss_pred             cCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC
Confidence             22222          678887 899997654

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.93  E-value=1.3e-24  Score=175.59  Aligned_cols=164  Identities=18%  Similarity=0.274  Sum_probs=134.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++.....  .......+.+|+.+++.++||||+++++++....    .+++||||+ +++|.+++....
T Consensus        21 ~~~~~~~~~vK~~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~----~~~~v~e~~-~~~L~~~~~~~~   93 (286)
T cd07832          21 DRETGETVALKKVALRRL--EGGIPNQALREIKALQACQHPYVVKLLDVFPHGS----GFVLVMEYM-PSDLSEVLRDEE   93 (286)
T ss_pred             ECCCCceEEEEEEEcccc--cchhhHHHHHHHHHHHhCCCCCCcceeeEEecCC----eeEEEeccc-CCCHHHHHHhcC
Confidence            346789999999985422  1334567889999999999999999999987643    689999999 999999987643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         .++++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..         ....++..|+|
T Consensus        94 ---~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a  168 (286)
T cd07832          94 ---RPLPEAQVKSYMRMLLKGVAYMHA--NGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRA  168 (286)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccC
Confidence               458999999999999999999999  7799999999999999999999999998765         13456889999


Q ss_pred             cccCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+..   ..+.          ++++++|..||.+...
T Consensus       169 PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~  206 (286)
T cd07832         169 PELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEND  206 (286)
T ss_pred             ceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCH
Confidence            99732   1122          6899999888865443

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.93  E-value=1.4e-24  Score=176.26  Aligned_cols=164  Identities=18%  Similarity=0.272  Sum_probs=130.2

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc---
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR---   82 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---   82 (218)
                      +..||+|.+...   ........+.+|+.++..++||||+++++.+...+    ..++||+|+.+++|.+++.....   
T Consensus        30 ~~~~~~k~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~~~  102 (290)
T cd05045          30 YTTVAVKMLKEN---ASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDG----PLLLIVEYAKYGSLRSFLRESRKVGP  102 (290)
T ss_pred             ceeEEEEecCCC---CCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC----CcEEEEEecCCCCHHHHHHhcCCccc
Confidence            356888888642   22344567889999999999999999999887654    47999999999999999875321   


Q ss_pred             -----------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----
Q psy238           83 -----------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----  141 (218)
Q Consensus        83 -----------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----  141 (218)
                                       ...++++..++.++.|++.||.|||+  .+++||||+|+|||+++++.++|+|||++..    
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~--~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~  180 (290)
T cd05045         103 SYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE--MKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEE  180 (290)
T ss_pred             cccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHH--CCeehhhhhhheEEEcCCCcEEeccccccccccCc
Confidence                             11347889999999999999999999  7799999999999999999999999999864    


Q ss_pred             ------ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          142 ------IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       142 ------~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                            ....++..|+|||..  ..++.          ++++++ |..||.+...+
T Consensus       181 ~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~  236 (290)
T cd05045         181 DSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPE  236 (290)
T ss_pred             cchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence                  122446789999962  22222          688888 99999766543

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.93  E-value=2e-24  Score=171.87  Aligned_cols=165  Identities=21%  Similarity=0.281  Sum_probs=135.9

Q ss_pred             CCCCCcEEEEEEeeccccc-ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERK-NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~-~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|.+...... ........+.+|+.++..++||||+++++++.+..    .+++|+||+++++|.+++...
T Consensus        21 ~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~   96 (258)
T cd06632          21 NLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREED----NLYIFLELVPGGSLAKLLKKY   96 (258)
T ss_pred             EcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCC----eEEEEEEecCCCcHHHHHHhc
Confidence            3457899999998754321 22345567889999999999999999999886643    589999999999999999764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQ  153 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aP  153 (218)
                          ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..       ....++..|+||
T Consensus        97 ----~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~p  170 (258)
T cd06632          97 ----GSFPEPVIRLYTRQILLGLEYLHD--RNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAP  170 (258)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEECCCCCEEEccCccceeccccccccccCCCcceeCH
Confidence                348899999999999999999999  7799999999999999999999999998764       345578889999


Q ss_pred             ccCCC---Cch----------hhhhhhCCCCCCcch
Q psy238          154 TYGRP---ISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~~---~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |....   ++.          ++++++|..||....
T Consensus       171 e~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~  206 (258)
T cd06632         171 EVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE  206 (258)
T ss_pred             HHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc
Confidence            96321   221          689999999997665

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.93  E-value=1.7e-24  Score=174.86  Aligned_cols=157  Identities=16%  Similarity=0.253  Sum_probs=127.4

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      .||+|++...   ........+.+|+.++..+.||||+++++++...     ..+++|+|+++|+|.+++....   ..+
T Consensus        38 ~va~K~~~~~---~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-----~~~l~~~~~~~g~l~~~l~~~~---~~~  106 (279)
T cd05109          38 PVAIKVLREN---TSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-----TVQLVTQLMPYGCLLDYVRENK---DRI  106 (279)
T ss_pred             EEEEEEecCC---CCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-----CcEEEEEcCCCCCHHHHHhhcc---CCC
Confidence            4899988642   2344566788999999999999999999988653     3689999999999999987643   358


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccccccC-
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATRQTYG-  156 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~aPE~~-  156 (218)
                      ++..++.++.|++.||.|||+  ++|+|+||+|+|||++.++.++|+|||++...          ...++..|+|||.. 
T Consensus       107 ~~~~~~~~~~qi~~~L~~lH~--~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (279)
T cd05109         107 GSQDLLNWCVQIAKGMSYLEE--VRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESIL  184 (279)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH--CCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhc
Confidence            999999999999999999999  77999999999999999999999999988641          12335679999973 


Q ss_pred             -CCCch----------hhhhhh-CCCCCCcchh
Q psy238          157 -RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       157 -~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                       ..++.          ++++++ |..||.....
T Consensus       185 ~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  217 (279)
T cd05109         185 HRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPA  217 (279)
T ss_pred             cCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence             22222          688888 8999876543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=1.2e-24  Score=176.29  Aligned_cols=161  Identities=24%  Similarity=0.314  Sum_probs=129.7

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|.+...   ........+.+|+.+++.+.||||+++++++...+  ...+++||||+++++|.+++.... 
T Consensus        30 ~~~~~~va~K~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~~lv~e~~~g~~L~~~l~~~~-  103 (284)
T cd05079          30 DNTGEQVAVKSLKPE---SGGNHIADLKKEIEILRNLYHENIVKYKGICTEDG--GNGIKLIMEFLPSGSLKEYLPRNK-  103 (284)
T ss_pred             CCccceEEEEEcCcc---ccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCC--CCceEEEEEccCCCCHHHHHHhcc-
Confidence            457889999998642   22445567899999999999999999999887642  235899999999999999987542 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSAT  151 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~  151 (218)
                        ..+++..++.++.|++.||.|||+  +|++|+||+|+|||++.++.++|+|||++..           ....++..|+
T Consensus       104 --~~~~~~~~~~i~~~i~~aL~~lH~--~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  179 (284)
T cd05079         104 --NKINLKQQLKYAVQICKGMDYLGS--RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWY  179 (284)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCcccc
Confidence              348999999999999999999999  7799999999999999999999999998764           1234566799


Q ss_pred             ccccC--CCCch----------hhhhhhCCCCCC
Q psy238          152 RQTYG--RPISG----------QYEIVTKTNNVT  173 (218)
Q Consensus       152 aPE~~--~~~~~----------~~ei~tg~~p~~  173 (218)
                      |||+.  ..++.          +++++++..|..
T Consensus       180 apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~  213 (284)
T cd05079         180 APECLIQSKFYIASDVWSFGVTLYELLTYCDSES  213 (284)
T ss_pred             CHHHhccCCCCccccchhhhhhhhhhhcCCCCCc
Confidence            99962  22222          678888776653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=1.1e-24  Score=175.62  Aligned_cols=161  Identities=20%  Similarity=0.235  Sum_probs=131.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC---CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE---HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~---hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|..||+|.+...   ........+.+|+.+++.+.   |||++++++++....    ..|+||||+++++|.+++.
T Consensus        22 ~~~~~~~~~iK~~~~~---~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~   94 (277)
T cd06917          22 HVPTGRVVALKIINLD---TPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGP----RLWIIMEYAEGGSVRTLMK   94 (277)
T ss_pred             EcCCCcEEEEEEecCC---CCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCC----EEEEEEecCCCCcHHHHHH
Confidence            4568899999998742   22334456788999988886   999999999886543    6899999999999999986


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                      ..     .+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|
T Consensus        95 ~~-----~l~~~~~~~i~~~i~~~l~~lh~--~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y  167 (277)
T cd06917          95 AG-----PIAEKYISVIIREVLVALKYIHK--VGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYW  167 (277)
T ss_pred             cc-----CCCHHHHHHHHHHHHHHHHHHHh--CCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccccCCcce
Confidence            42     48999999999999999999999  6799999999999999999999999998764        234578889


Q ss_pred             cccccCC---CCch----------hhhhhhCCCCCCcch
Q psy238          151 TRQTYGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       151 ~aPE~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +|||...   .++.          +++|++|..||....
T Consensus       168 ~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~  206 (277)
T cd06917         168 MAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVD  206 (277)
T ss_pred             eCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999632   2222          689999999997543

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.93  E-value=1.7e-24  Score=173.42  Aligned_cols=158  Identities=22%  Similarity=0.238  Sum_probs=126.5

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||+|.+....     .....+.+|+.+++.++||||+++++++...     ..++||+|+++++|.+++.....  ..
T Consensus        31 ~~valK~~~~~~-----~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~-----~~~lv~e~~~~~~L~~~~~~~~~--~~   98 (262)
T cd05071          31 TRVAIKTLKPGT-----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE-----PIYIVTEYMSKGSLLDFLKGEMG--KY   98 (262)
T ss_pred             ceEEEEecccCc-----cCHHHHHHHHHHHHhCCCCCcceEEEEECCC-----CcEEEEEcCCCCcHHHHHhhccc--cC
Confidence            469999987421     1234678899999999999999999887432     37999999999999999976432  34


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccccccC-
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTYG-  156 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~~-  156 (218)
                      +++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+...         ...++..|+|||+. 
T Consensus        99 ~~~~~~~~~~~~l~~aL~~lH~--~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  176 (262)
T cd05071          99 LRLPQLVDMAAQIASGMAYVER--MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAAL  176 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH--CCccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhc
Confidence            7899999999999999999999  77999999999999999999999999988641         22345679999973 


Q ss_pred             -CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          157 -RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       157 -~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                       ..++.          ++++++ |..||......
T Consensus       177 ~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~  210 (262)
T cd05071         177 YGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR  210 (262)
T ss_pred             cCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChH
Confidence             22222          688888 88899766543

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.93  E-value=1.7e-24  Score=172.91  Aligned_cols=158  Identities=18%  Similarity=0.292  Sum_probs=128.0

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||||.+....     .....+.+|+.++..++||||+++++++....    .+++||||+.+++|.+++....   .
T Consensus        28 ~~~~aik~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~i~~~~---~   95 (256)
T cd05113          28 QYDVAIKMIKEGS-----MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQR----PIYIVTEYMSNGCLLNYLREHG---K   95 (256)
T ss_pred             CCcEEEEEcCCCc-----ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCC----CcEEEEEcCCCCcHHHHHHhcC---C
Confidence            3469999886321     12356889999999999999999999986644    4799999999999999987643   2


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccccccC
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTYG  156 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~~  156 (218)
                      .+++..++.++.|++.||.|||+  .+++|+||+|.|||++.++.++|+|||.+..         ....++..|+|||+.
T Consensus        96 ~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~  173 (256)
T cd05113          96 RFQPSQLLEMCKDVCEGMAYLES--KQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVL  173 (256)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHH
Confidence            58999999999999999999999  7799999999999999999999999998764         122345679999973


Q ss_pred             C--CCch----------hhhhhh-CCCCCCcchh
Q psy238          157 R--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       157 ~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      .  .++.          ++++++ |..||.....
T Consensus       174 ~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~  207 (256)
T cd05113         174 LYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN  207 (256)
T ss_pred             hcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH
Confidence            2  2222          688888 9999976554

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.93  E-value=2e-24  Score=172.01  Aligned_cols=164  Identities=21%  Similarity=0.372  Sum_probs=134.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+.....  .......+.+|+.+++.++||||+++++++...+    +.++||||+++++|.+++....
T Consensus        21 ~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~   94 (256)
T cd08218          21 SKEDGKQYVIKEINISKM--SPKEREESRKEVAVLSNMKHPNIVQYQESFEENG----NLYIVMDYCEGGDLYKKINAQR   94 (256)
T ss_pred             EcCCCCEEEEEEEEhHhC--ChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCC----eEEEEEecCCCCcHHHHHHhcc
Confidence            346789999999875322  2334567889999999999999999999986643    6899999999999999987643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------cCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------ENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------~~~~t~~y~aP  153 (218)
                      .  ..+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...        ...+++.|+||
T Consensus        95 ~--~~~~~~~~~~~~~~l~~~l~~lh~--~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~p  170 (256)
T cd08218          95 G--VLFPEDQILDWFVQICLALKHVHD--RKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSP  170 (256)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHh--CCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCH
Confidence            2  347899999999999999999999  77999999999999999999999999988651        23578889999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcc
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+.  ..++.          ++++++|..||...
T Consensus       171 e~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~  204 (256)
T cd08218         171 EICENRPYNNKSDIWALGCVLYEMCTLKHAFEAG  204 (256)
T ss_pred             HHhCCCCCCCccchhHHHHHHHHHHcCCCCccCC
Confidence            972  22221          68899999999754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.93  E-value=1.7e-24  Score=173.06  Aligned_cols=159  Identities=20%  Similarity=0.244  Sum_probs=127.6

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..||+|.+.....     ....+.+|+.+++.++||+|+++++++...     ..++||+|+++++|.+++..... 
T Consensus        28 ~~~~~~~~k~~~~~~~-----~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~-----~~~lv~e~~~~~~L~~~~~~~~~-   96 (260)
T cd05070          28 NGNTKVAVKTLKPGTM-----SPESFLEEAQIMKKLRHDKLVQLYAVVSEE-----PIYIVTEYMSKGSLLDFLKDGEG-   96 (260)
T ss_pred             cCCceeEEEEecCCCC-----CHHHHHHHHHHHHhcCCCceEEEEeEECCC-----CcEEEEEecCCCcHHHHHHhcCC-
Confidence            3567799998874321     234688999999999999999999887432     37899999999999999976432 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQT  154 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE  154 (218)
                       ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+...         ...++..|+|||
T Consensus        97 -~~~~~~~~~~~~~~l~~al~~lH~--~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  173 (260)
T cd05070          97 -RALKLPNLVDMAAQVAAGMAYIER--MNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPE  173 (260)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChH
Confidence             458999999999999999999999  77999999999999999999999999988641         123456799999


Q ss_pred             cC--CCCch----------hhhhhh-CCCCCCcch
Q psy238          155 YG--RPISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       155 ~~--~~~~~----------~~ei~t-g~~p~~~~~  176 (218)
                      +.  ...+.          ++++++ |..||.+..
T Consensus       174 ~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~  208 (260)
T cd05070         174 AALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMN  208 (260)
T ss_pred             HHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCC
Confidence            73  22222          688888 889997644

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.92  E-value=2e-24  Score=174.57  Aligned_cols=165  Identities=16%  Similarity=0.208  Sum_probs=133.0

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ..+|..||+|++...     ......+..|+.++..+ +||||+++++++.....  ....+|++|||+++++|.+++..
T Consensus        38 ~~~~~~~a~K~~~~~-----~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~  112 (282)
T cd06636          38 VKTGQLAAIKVMDVT-----EDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKN  112 (282)
T ss_pred             cCCCcEEEEEEEecC-----hHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHH
Confidence            457889999998642     23345678889999888 79999999999864321  23578999999999999999986


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSAT  151 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~  151 (218)
                      ...  ..+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..        ....+++.|+
T Consensus       113 ~~~--~~~~~~~~~~~~~qi~~al~~LH~--~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~  188 (282)
T cd06636         113 TKG--NALKEDWIAYICREILRGLAHLHA--HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWM  188 (282)
T ss_pred             ccC--CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCCccccccccc
Confidence            543  348888999999999999999999  7799999999999999999999999998754        2355788999


Q ss_pred             ccccCC-------CCch----------hhhhhhCCCCCCcch
Q psy238          152 RQTYGR-------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       152 aPE~~~-------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |||+..       .++.          ++++++|..||....
T Consensus       189 aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~  230 (282)
T cd06636         189 APEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMH  230 (282)
T ss_pred             CHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccC
Confidence            999632       1111          799999999997543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0666|consensus

Probab=99.92  E-value=2.7e-26  Score=181.32  Aligned_cols=159  Identities=21%  Similarity=0.226  Sum_probs=129.5

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC-CC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV-KK   86 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~-~~   86 (218)
                      .+|||.+...  .+.......+.+|+.+++.++||||+.|..+|...+   ..++++++|.+ .+|+++|+.+.... ..
T Consensus        55 ~yAiKkfk~~--kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d---~~v~l~fdYAE-hDL~~II~fHr~~~~~~  128 (438)
T KOG0666|consen   55 EYAIKKFKGE--KDGTGISMSACREIALLRELKHPNVISLVKVFLSHD---KKVWLLFDYAE-HDLWHIIKFHRASKAKQ  128 (438)
T ss_pred             hhHHHHHhcc--CCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC---ceEEEEehhhh-hhHHHHHHHhccchhcc
Confidence            7888888754  233456678899999999999999999999887643   46999999996 69999998775422 35


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC----CcEEEeecCcccc-----------ccCCCccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN----GLVKIGCDTYTHT-----------IENKKYLSAT  151 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~----~~~ki~dfg~~~~-----------~~~~~t~~y~  151 (218)
                      +|...+..++.||+.|+.|||+  +=|+||||||.|||+..+    |.++|+|+|+++.           ...+.|++|.
T Consensus       129 lp~~mvKsilwQil~Gv~YLH~--NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYR  206 (438)
T KOG0666|consen  129 LPRSMVKSILWQILDGVHYLHS--NWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYR  206 (438)
T ss_pred             CCHHHHHHHHHHHHhhhHHHhh--hheeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEec
Confidence            8999999999999999999999  669999999999999877    9999999999876           4456799999


Q ss_pred             cccc--CC-CCch----------hhhhhhCCCCCCc
Q psy238          152 RQTY--GR-PISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       152 aPE~--~~-~~~~----------~~ei~tg~~p~~~  174 (218)
                      |||+  |. -++.          ..|+++-..-|.+
T Consensus       207 APELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g  242 (438)
T KOG0666|consen  207 APELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKG  242 (438)
T ss_pred             ChHHhcccccccchhhhHHHHHHHHHHHccCccccc
Confidence            9997  22 4444          4566666666643

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.92  E-value=1.6e-24  Score=173.24  Aligned_cols=159  Identities=21%  Similarity=0.230  Sum_probs=127.2

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||+|.+....     .....+.+|+.+++.+.|||++++++++...     ..++||+|+++++|.+++.....  .
T Consensus        30 ~~~~~lK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~v~e~~~~~~L~~~~~~~~~--~   97 (260)
T cd05069          30 TTKVAIKTLKPGT-----MMPEAFLQEAQIMKKLRHDKLVPLYAVVSEE-----PIYIVTEFMGKGSLLDFLKEGDG--K   97 (260)
T ss_pred             CceEEEEEcccCC-----ccHHHHHHHHHHHHhCCCCCeeeEEEEEcCC-----CcEEEEEcCCCCCHHHHHhhCCC--C
Confidence            3468999876321     2335678899999999999999999887432     37899999999999999976432  4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccccccC
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTYG  156 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~~  156 (218)
                      .+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...         ...++..|+|||+.
T Consensus        98 ~~~~~~~~~~~~~l~~al~~lH~--~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~  175 (260)
T cd05069          98 YLKLPQLVDMAAQIADGMAYIER--MNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAA  175 (260)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHh
Confidence            48899999999999999999999  77999999999999999999999999988641         22345679999973


Q ss_pred             C--CCch----------hhhhhh-CCCCCCcchhh
Q psy238          157 R--PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       157 ~--~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      .  ..+.          +|++++ |..||.+....
T Consensus       176 ~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~  210 (260)
T cd05069         176 LYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNR  210 (260)
T ss_pred             ccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence            2  2222          688998 89999765543

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.92  E-value=1.9e-24  Score=175.50  Aligned_cols=163  Identities=18%  Similarity=0.199  Sum_probs=129.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++.....   ......+.+|+.+++.++|+||+++++++....    ..|+||||+. ++|.+++....
T Consensus        26 ~~~~~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~   97 (291)
T cd07870          26 SRINGQLVALKVISMKTE---EGVPFTAIREASLLKGLKHANIVLLHDIIHTKE----TLTFVFEYMH-TDLAQYMIQHP   97 (291)
T ss_pred             EcCCCcEEEEEEecccCc---CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCC----eEEEEEeccc-CCHHHHHHhCC
Confidence            456789999999874321   122335678999999999999999999987543    6899999995 78887775432


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+++.|+||
T Consensus        98 ---~~~~~~~~~~~~~qi~~~L~~lH~--~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  172 (291)
T cd07870          98 ---GGLHPYNVRLFMFQLLRGLAYIHG--QHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPP  172 (291)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCC
Confidence               347888899999999999999999  7799999999999999999999999998764        233468899999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..   ..+.          ++++++|..||.....
T Consensus       173 E~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~  209 (291)
T cd07870         173 DVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSD  209 (291)
T ss_pred             ceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchh
Confidence            9732   1222          7999999999976544

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.92  E-value=3.2e-24  Score=172.32  Aligned_cols=166  Identities=18%  Similarity=0.239  Sum_probs=128.5

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHhhcc--c
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKRTKR--N   83 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~~~~--~   83 (218)
                      .||+|.+...  .........+..|+.++..++||||+++++++.....  .....+++|+|+++++|.+++.....  .
T Consensus        28 ~~a~k~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~  105 (272)
T cd05075          28 KVAVKTMKIA--ICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDC  105 (272)
T ss_pred             eEEEEecccC--cCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCC
Confidence            6899988743  2224556778899999999999999999998754321  22357899999999999998854321  2


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATRQ  153 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~aP  153 (218)
                      ...+++..+..++.|++.||.|||+  ++|+||||+|+|||++.++.++|+|||++...          ...+++.|+||
T Consensus       106 ~~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~p  183 (272)
T cd05075         106 PQYLPTQMLVKFMTDIASGMEYLSS--KSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAI  183 (272)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHH--CCeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCH
Confidence            2348899999999999999999999  77999999999999999999999999997641          12345679999


Q ss_pred             ccCC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          154 TYGR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      |+..  .++.          ++++++ |..||.....
T Consensus       184 e~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  220 (272)
T cd05075         184 ESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN  220 (272)
T ss_pred             HHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence            9732  2222          688888 8889976433

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.92  E-value=2.4e-24  Score=172.86  Aligned_cols=160  Identities=19%  Similarity=0.288  Sum_probs=128.4

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||+|.+...   ........+.+|+.++..++||||+++++++...+    .+|+||||+++++|.+++....   .
T Consensus        32 ~~~~~ik~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~---~  101 (267)
T cd05066          32 EIPVAIKTLKAG---YTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSK----PVMIVTEYMENGSLDAFLRKHD---G  101 (267)
T ss_pred             ceEEEEEECCCC---CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC----ccEEEEEcCCCCCHHHHHHhcC---C
Confidence            347999988642   22344567889999999999999999999986543    5899999999999999997643   3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------cCCCcccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------ENKKYLSATRQT  154 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------~~~~t~~y~aPE  154 (218)
                      .+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...           ...++..|+|||
T Consensus       102 ~~~~~~~~~i~~~i~~~l~~lH~--~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe  179 (267)
T cd05066         102 QFTVIQLVGMLRGIASGMKYLSD--MGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPE  179 (267)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH--CCEeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHh
Confidence            58899999999999999999999  77999999999999999999999999987641           112245799999


Q ss_pred             cCC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          155 YGR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      +..  .++.          ++++++ |..||.+...
T Consensus       180 ~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~  215 (267)
T cd05066         180 AIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN  215 (267)
T ss_pred             HhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH
Confidence            732  2221          688776 9999976644

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.92  E-value=3e-24  Score=174.60  Aligned_cols=165  Identities=22%  Similarity=0.248  Sum_probs=131.6

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc--
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR--   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~--   82 (218)
                      .+..||+|.+...   ........+.+|+.+++.++||||+++++++....    .+++||+++++++|.+++.....  
T Consensus        45 ~~~~va~K~~~~~---~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~~  117 (296)
T cd05051          45 APVLVAVKVLRPD---ASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDP----PLCMIMEYMENGDLNQFLQKHVAET  117 (296)
T ss_pred             CceeEEEEEecCc---cCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEecCC----CcEEEEecCCCCCHHHHHHhccccc
Confidence            4567999998743   22345677889999999999999999999987643    58999999999999999987541  


Q ss_pred             -----cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCc
Q psy238           83 -----NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKY  147 (218)
Q Consensus        83 -----~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t  147 (218)
                           ....+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..          ....++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~--~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  195 (296)
T cd05051         118 SGLACNSKSLSFSTLLYMATQIASGMRYLES--LNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLP  195 (296)
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHHHHHHHH--cCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCC
Confidence                 11258999999999999999999999  7799999999999999999999999998764          123446


Q ss_pred             ccccccccCC--CCch----------hhhhhh--CCCCCCcchhh
Q psy238          148 LSATRQTYGR--PISG----------QYEIVT--KTNNVTEKKKE  178 (218)
Q Consensus       148 ~~y~aPE~~~--~~~~----------~~ei~t--g~~p~~~~~~e  178 (218)
                      ..|+|||+..  .++.          +|++++  |..||......
T Consensus       196 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~  240 (296)
T cd05051         196 IRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQ  240 (296)
T ss_pred             ceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChH
Confidence            7899999622  2222          688877  77788765443

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.92  E-value=1.5e-24  Score=175.20  Aligned_cols=166  Identities=17%  Similarity=0.277  Sum_probs=134.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+.....   ......+.+|+.+++.++||||+++++++.+.+    .+++||||++ ++|.+++....
T Consensus        21 ~~~~~~~~~iK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~   92 (284)
T cd07836          21 NRTTGEIVALKEIHLDAE---EGTPSTAIREISLMKELKHENIVRLHDVIHTEN----KLMLVFEYMD-KDLKKYMDTHG   92 (284)
T ss_pred             ECCCCeEEEEEEeccccc---ccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCC----cEEEEEecCC-ccHHHHHHhcC
Confidence            456899999999975422   223355678999999999999999999987754    5899999997 58999887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      . ...+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|++|
T Consensus        93 ~-~~~~~~~~~~~~~~qi~~~l~~lH~--~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~P  169 (284)
T cd07836          93 V-RGALDPNTVKSFTYQLLKGIAFCHE--NRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAP  169 (284)
T ss_pred             C-CCCcCHHHHHHHHHHHHHHHHHHHH--CCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccccccccccccCh
Confidence            2 2358999999999999999999999  7799999999999999999999999998864        234568889999


Q ss_pred             ccC--C-CCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG--R-PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~--~-~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.  . .++.          ++++++|..||.+....
T Consensus       170 E~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~  207 (284)
T cd07836         170 DVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNE  207 (284)
T ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcH
Confidence            963  2 1121          68999999999876543

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.92  E-value=2.1e-24  Score=180.19  Aligned_cols=164  Identities=18%  Similarity=0.165  Sum_probs=131.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||.+...  .........+.+|+.++..++||||++++++|.....  +..+.|+||||+. ++|.+.+..
T Consensus        37 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~  113 (353)
T cd07850          37 DTVTGQNVAIKKLSRP--FQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIQM  113 (353)
T ss_pred             ECCCCCEEEEEecCcc--ccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEEeccC-CCHHHHHhh
Confidence            4568999999988632  1223344567789999999999999999998865432  2246899999995 688888754


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                      .      ++...+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..       ....++..|+|
T Consensus       114 ~------l~~~~~~~~~~ql~~aL~~LH~--~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~a  185 (353)
T cd07850         114 D------LDHERMSYLLYQMLCGIKHLHS--AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRA  185 (353)
T ss_pred             c------CCHHHHHHHHHHHHHHHHHHHh--CCeeeCCCCHHHEEECCCCCEEEccCccceeCCCCCCCCCCcccccccC
Confidence            2      8889999999999999999999  7799999999999999999999999999875       23456888999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcch
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||+  +..++.          ++++++|+.||....
T Consensus       186 PE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~  221 (353)
T cd07850         186 PEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTD  221 (353)
T ss_pred             HHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCC
Confidence            996  222222          689999999997654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.92  E-value=2.9e-24  Score=174.27  Aligned_cols=159  Identities=18%  Similarity=0.290  Sum_probs=132.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...    .......+.+|+.++..+.||||+++++++...+    ..++|++|+++++|.+++..  
T Consensus        40 ~~~~~~~~~iK~~~~~----~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~----~~~~v~e~~~~~~L~~~~~~--  109 (285)
T cd06648          40 DKSTGRQVAVKKMDLR----KQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGD----ELWVVMEFLEGGALTDIVTH--  109 (285)
T ss_pred             ECCCCCEEEEEEEecc----chhHHHHHHHHHHHHHHcCCCChheEEEEEEcCC----eEEEEEeccCCCCHHHHHHh--
Confidence            3467889999988632    2334556889999999999999999999887643    58999999999999999876  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..++...+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..        ....+++.|+||
T Consensus       110 ---~~~~~~~~~~~~~ql~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aP  184 (285)
T cd06648         110 ---TRMNEEQIATVCLAVLKALSFLHA--QGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAP  184 (285)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCH
Confidence               238899999999999999999999  7799999999999999999999999997654        224578899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcc
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+..  .++.          ++++++|..||...
T Consensus       185 E~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~  218 (285)
T cd06648         185 EVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNE  218 (285)
T ss_pred             HHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCC
Confidence            9732  2222          79999999999654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.92  E-value=4e-24  Score=173.55  Aligned_cols=164  Identities=15%  Similarity=0.168  Sum_probs=128.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN-   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-   83 (218)
                      .+..||+|.+...   ........+.+|+.+++.++||||+++++++....    ..|+||||+++++|.+++...... 
T Consensus        35 ~~~~vavK~~~~~---~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~~~~  107 (288)
T cd05061          35 AETRVAVKTVNES---ASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ----PTLVVMELMAHGDLKSYLRSLRPEA  107 (288)
T ss_pred             cceEEEEEECCCc---CCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC----CcEEEEeCCCCCCHHHHHHHhcccc
Confidence            3568999988643   22334456788999999999999999999987654    489999999999999999764311 


Q ss_pred             -----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcc
Q psy238           84 -----VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYL  148 (218)
Q Consensus        84 -----~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~  148 (218)
                           ...++...+..++.|++.||.|||+  ++|+||||+|+|||++.++.++|+|||++..          ....++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~--~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~  185 (288)
T cd05061         108 ENNPGRPPPTLQEMIQMAAEIADGMAYLNA--KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV  185 (288)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHHHh--CCCcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccc
Confidence                 1235677889999999999999999  7799999999999999999999999998763          1123467


Q ss_pred             cccccccC--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          149 SATRQTYG--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       149 ~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      .|+|||..  ..++.          ++++++ |..||.....
T Consensus       186 ~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~  227 (288)
T cd05061         186 RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN  227 (288)
T ss_pred             cccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            79999973  23332          578887 7888876443

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.92  E-value=2.3e-24  Score=174.81  Aligned_cols=167  Identities=18%  Similarity=0.202  Sum_probs=132.1

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|++...   ........+.+|+.++..+.||||+++++++.+..    .+++||||+++++|.+++.....
T Consensus        32 ~~~~~~~aiK~~~~~---~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~  104 (288)
T cd05050          32 YEPFTMVAVKMLKEE---ASADMQADFQREAALMAEFDHPNIVKLLGVCAVGK----PMCLLFEYMAYGDLNEFLRHRSP  104 (288)
T ss_pred             CCcceeEEEEecCCC---cCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC----ccEEEEecCCCCCHHHHHHHcCc
Confidence            346789999998742   22344567889999999999999999999987643    58999999999999999975321


Q ss_pred             ------------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---
Q psy238           83 ------------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---  141 (218)
Q Consensus        83 ------------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---  141 (218)
                                        ....+++..++.++.|++.||.|||+  ++++|+||+|+|||++.++.++|+|||++..   
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  182 (288)
T cd05050         105 RAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE--RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYS  182 (288)
T ss_pred             cccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh--CCeecccccHhheEecCCCceEECccccceeccc
Confidence                              11247888999999999999999999  7799999999999999999999999998764   


Q ss_pred             -------ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          142 -------IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       142 -------~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                             .....+..|+|||+  +..++.          +|+|++ |..||.+...+
T Consensus       183 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~  239 (288)
T cd05050         183 ADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHE  239 (288)
T ss_pred             CccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence                   12234567999996  223322          678887 88898765544

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.92  E-value=2.5e-24  Score=176.35  Aligned_cols=164  Identities=17%  Similarity=0.236  Sum_probs=129.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      ++..||+|.+...   ........+..|+.++..+ +||||+++++++...+    .+|+||||+++++|.+++......
T Consensus        49 ~~~~~aiK~~~~~---~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~~~~~~  121 (307)
T cd05098          49 RVTKVAVKMLKSD---ATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG----PLYVIVEYASKGNLREYLRARRPP  121 (307)
T ss_pred             ccceEEEEeccCC---CChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC----ceEEEEecCCCCcHHHHHHhcCCc
Confidence            3457999988742   1234456788899999999 7999999999987654    589999999999999999865321


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------
Q psy238           84 ------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------  142 (218)
Q Consensus        84 ------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------  142 (218)
                                  ...+++..+..++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||.+...         
T Consensus       122 ~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~--~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~  199 (307)
T cd05098         122 GMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS--KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT  199 (307)
T ss_pred             ccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH--CCcccccccHHheEEcCCCcEEECCCcccccccccchhhcc
Confidence                        1248889999999999999999999  77999999999999999999999999987641         


Q ss_pred             -cCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          143 -ENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       143 -~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                       ...++..|+|||+.  ..++.          +|++++ |..||.+...
T Consensus       200 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~  248 (307)
T cd05098         200 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV  248 (307)
T ss_pred             ccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCH
Confidence             12234679999962  22222          688888 8888876544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.92  E-value=2.3e-24  Score=174.12  Aligned_cols=164  Identities=18%  Similarity=0.195  Sum_probs=128.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHH-hhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFEN-LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~-l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||.+....  . ......+..|+.+ ++.++||||+++++++...+    .+|+||+|++ ++|.+++...
T Consensus        22 ~~~~~~~vaiK~~~~~~--~-~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~l~~~   93 (283)
T cd06617          22 HVPTGTIMAVKRIRATV--N-SQEQKRLLMDLDISMRSVDCPYTVTFYGALFREG----DVWICMEVMD-TSLDKFYKKV   93 (283)
T ss_pred             EcCCCcEEEEEEEecCC--C-cHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCC----cEEEEhhhhc-ccHHHHHHHh
Confidence            45689999999987431  1 1223345556554 56679999999999987644    5899999996 7999988765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSP-PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~-~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                      ......+++..++.++.|++.||.|||+  + +++|+||+|+|||++.++.++|+|||++..       ....++..|+|
T Consensus        94 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~--~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a  171 (283)
T cd06617          94 YDKGLTIPEDILGKIAVSIVKALEYLHS--KLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAGCKPYMA  171 (283)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHhh--cCCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccCCccccC
Confidence            4333569999999999999999999998  5 699999999999999999999999998764       22467889999


Q ss_pred             cccCC------CCch----------hhhhhhCCCCCCcc
Q psy238          153 QTYGR------PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       153 PE~~~------~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ||+..      .++.          ++++++|..||...
T Consensus       172 PE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  210 (283)
T cd06617         172 PERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSW  210 (283)
T ss_pred             hhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCcc
Confidence            99632      1111          79999999999653

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=4.7e-24  Score=169.97  Aligned_cols=161  Identities=18%  Similarity=0.249  Sum_probs=132.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .|+.||||.+...     ......+.+|+.++..+.|+||+++++++.+..    ..++||||+++++|.+++.....  
T Consensus        28 ~~~~v~iK~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~~~~~~~--   96 (256)
T cd05039          28 RGQKVAVKCLKDD-----STAAQAFLAEASVMTTLRHPNLVQLLGVVLQGN----PLYIVTEYMAKGSLVDYLRSRGR--   96 (256)
T ss_pred             cCcEEEEEEeccc-----hhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCC----CeEEEEEecCCCcHHHHHHhcCC--
Confidence            5788999999743     125677889999999999999999999987633    58999999999999999987542  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccCC--
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYGR--  157 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~~--  157 (218)
                      ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..     .....+..|+|||+..  
T Consensus        97 ~~~~~~~~~~~~~qi~~~l~~lh~--~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~~  174 (256)
T cd05039          97 AVITLAQQLGFALDVCEGMEYLEE--KNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREK  174 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCccchhcccceEEEeCCCCEEEcccccccccccccccCCCcccccCchhhcCC
Confidence            358999999999999999999999  7799999999999999999999999998875     2234466799999632  


Q ss_pred             CCch----------hhhhhh-CCCCCCcchhh
Q psy238          158 PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       158 ~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      .++.          ++++++ |..||.....+
T Consensus       175 ~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~  206 (256)
T cd05039         175 KFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK  206 (256)
T ss_pred             cCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence            2222          577776 99999766543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.92  E-value=3.7e-24  Score=175.90  Aligned_cols=165  Identities=18%  Similarity=0.249  Sum_probs=129.9

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      ++..||+|.+...   ........+..|+.++..+ +||||+++++++.+.+    .+|+||||+++++|.+++..... 
T Consensus        43 ~~~~~aiK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~i~~~~~~  115 (314)
T cd05099          43 QTVTVAVKMLKDN---ATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEG----PLYVIVEYAAKGNLREFLRARRPP  115 (314)
T ss_pred             cceEEEEEecCCC---CChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCC----ceEEEEecCCCCcHHHHHHhcCCC
Confidence            3457999988732   2234456788999999999 6999999999987643    58999999999999999976432 


Q ss_pred             -----------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------
Q psy238           83 -----------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------  142 (218)
Q Consensus        83 -----------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------  142 (218)
                                 ....+++..+..++.|++.||.|||+  +|++|+||+|+|||++.++.++|+|||++...         
T Consensus       116 ~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~--~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~  193 (314)
T cd05099         116 GPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES--RRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKT  193 (314)
T ss_pred             cccccccccCCcccccCHHHHHHHHHHHHHHHHHHHH--CCeeeccccceeEEEcCCCcEEEcccccccccccccccccc
Confidence                       11348889999999999999999999  77999999999999999999999999998641         


Q ss_pred             -cCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          143 -ENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       143 -~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                       ...++..|+|||+.  ..++.          ++++++ |..||.....+
T Consensus       194 ~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~  243 (314)
T cd05099         194 SNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVE  243 (314)
T ss_pred             ccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHH
Confidence             12234579999962  22222          688888 88898765543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.92  E-value=3.5e-24  Score=170.38  Aligned_cols=165  Identities=19%  Similarity=0.297  Sum_probs=134.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..||||.+.....  .......+.+|+.+++.++||||+++++.+...    ..+++||||+++++|.+++....
T Consensus        21 ~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~----~~~~lv~e~~~~~~L~~~~~~~~   94 (256)
T cd08220          21 RKADQKLVIIKQIPVEQM--TKDERLAAQNECQVLKLLSHPNIIEYYENFLED----KALMIVMEYAPGGTLAEYIQKRC   94 (256)
T ss_pred             EcCCCcEEEEEEEecccc--ccHHHHHHHHHHHHHhhCCCCchhheeeeEecC----CEEEEEEecCCCCCHHHHHHHhc
Confidence            456789999999975422  234456788999999999999999999988653    36899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc-------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT-------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~-------~~~~~t~~y~aP  153 (218)
                      .  ..+++..+..++.|++.||.|||+  ++++|+||+|+||+++.+ +.++|+|||++..       ....++..|+||
T Consensus        95 ~--~~~~~~~~~~~~~~i~~~l~~lh~--~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aP  170 (256)
T cd08220          95 N--SLLDEDTILHFFVQILLALHHVHT--KLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISP  170 (256)
T ss_pred             c--cCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccccccCCcccCc
Confidence            2  458999999999999999999999  779999999999999855 5689999998865       234678899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |...  ..+.          ++++++|..||....
T Consensus       171 E~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  205 (256)
T cd08220         171 ELCEGKPYNQKSDIWALGCVLYELASLKRAFEAAN  205 (256)
T ss_pred             hhccCCCCCcccchHHHHHHHHHHHhCCCCcccCc
Confidence            9732  2111          689999999997654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.92  E-value=3.2e-24  Score=170.46  Aligned_cols=169  Identities=22%  Similarity=0.305  Sum_probs=138.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+.....  .......+..|+.+++.++||||+++++++.+.    ...++||+|+++++|..++....
T Consensus        21 ~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~----~~~~~v~e~~~~~~L~~~~~~~~   94 (256)
T cd08530          21 RLSDNQFYALKEVDLGSM--SQKEREDAVNEIRILASVNHPNIISYKEAFLDG----NKLCIVMEYAPFGDLSKAISKRK   94 (256)
T ss_pred             ECCCCCEEEEEEEehhhc--cHHHHHHHHHHHHHHHhCCCCCchhhhhhhccC----CEEEEEehhcCCCCHHHHHHHHH
Confidence            356789999999875322  234456778899999999999999999888764    36899999999999999988754


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                      .....+++..++.++.|++.||.|||+  .+++|+||+|.||+++.++.++|+|||++..      ....++..|+|||.
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~al~~lh~--~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~  172 (256)
T cd08530          95 KKRKLIPEQEIWRIFIQLLRGLQALHE--QKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEV  172 (256)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHhh--CCcccCCCCcceEEEecCCcEEEeeccchhhhccCCcccccCCccccCHHH
Confidence            334568999999999999999999999  7799999999999999999999999998765      23457889999997


Q ss_pred             C--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          156 G--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .  ..++.          ++++++|..||.....+
T Consensus       173 ~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~  207 (256)
T cd08530         173 WKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ  207 (256)
T ss_pred             HCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            3  22222          68999999999766543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.92  E-value=1.7e-24  Score=176.29  Aligned_cols=166  Identities=20%  Similarity=0.271  Sum_probs=133.0

Q ss_pred             CCCCCcEEEEEEeeccccc-ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERK-NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~-~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||.+...... ........+..|+.++..++||||+++++++.+.    ..+++||||+ +++|.+++...
T Consensus        21 ~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~----~~~~lv~e~~-~~~L~~~i~~~   95 (298)
T cd07841          21 DKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHK----SNINLVFEFM-ETDLEKVIKDK   95 (298)
T ss_pred             ECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecC----CEEEEEEccc-CCCHHHHHhcc
Confidence            4567899999999854322 1123455677899999999999999999998773    3689999999 89999999764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------cCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------ENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------~~~~t~~y~a  152 (218)
                      .   ..+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++...        ...++..|+|
T Consensus        96 ~---~~~~~~~~~~~~~qi~~al~~lH~--~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a  170 (298)
T cd07841          96 S---IVLTPADIKSYMLMTLRGLEYLHS--NWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRA  170 (298)
T ss_pred             C---CCCCHHHHHHHHHHHHHHHHHHHh--CCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeC
Confidence            3   258999999999999999999999  77999999999999999999999999988652        2345678999


Q ss_pred             cccC---CCCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYG---RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~---~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||..   ..++.          ++++++|..||.....
T Consensus       171 PE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~  208 (298)
T cd07841         171 PELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSD  208 (298)
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCcc
Confidence            9963   12222          6889999777765443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>KOG1151|consensus

Probab=99.92  E-value=1.2e-24  Score=179.15  Aligned_cols=172  Identities=22%  Similarity=0.297  Sum_probs=141.4

Q ss_pred             CCCCCCcEEEEEEeeccccc---ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHH
Q psy238            1 MDTEEGVEVVWNEVQFSERK---NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~---~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +|....+.||||+-......   ........+.+|..|-+.|.||.||++|++|.....   .+|-|+|||+|.+|+.||
T Consensus       483 FDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd---sFCTVLEYceGNDLDFYL  559 (775)
T KOG1151|consen  483 FDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD---SFCTVLEYCEGNDLDFYL  559 (775)
T ss_pred             cccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc---cceeeeeecCCCchhHHH
Confidence            57888899999998875322   113355678899999999999999999999876443   489999999999999999


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC---CcEEEeecCcccc-------------
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN---GLVKIGCDTYTHT-------------  141 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~---~~~ki~dfg~~~~-------------  141 (218)
                      ..+..    +++..++.|+.||+.||.||.....+|||-||||.|||+...   |.++|+|||++..             
T Consensus       560 KQhkl----mSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGme  635 (775)
T KOG1151|consen  560 KQHKL----MSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGME  635 (775)
T ss_pred             Hhhhh----hhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCccccee
Confidence            98754    999999999999999999999855789999999999999654   8999999999876             


Q ss_pred             --ccCCCccccccccc---CC-C--Cc----------hhhhhhhCCCCCCcchhhh
Q psy238          142 --IENKKYLSATRQTY---GR-P--IS----------GQYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       142 --~~~~~t~~y~aPE~---~~-~--~~----------~~~ei~tg~~p~~~~~~ee  179 (218)
                        ....||+||++||+   +. |  ++          ..|..+.|+.||.......
T Consensus       636 LTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQ  691 (775)
T KOG1151|consen  636 LTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQ  691 (775)
T ss_pred             eecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHH
Confidence              45789999999996   21 1  11          1688899999998665443

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.92  E-value=2.1e-24  Score=175.45  Aligned_cols=170  Identities=19%  Similarity=0.226  Sum_probs=132.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||||.+....  ........+.+|+.++..+ +||||+++++++..... +...+|+||+|++ ++|.+++..
T Consensus        22 ~~~~~~~v~lK~~~~~~--~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~   98 (295)
T cd07837          22 DKNTGKLVALKKTRLEM--DEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLD-SDLKKFMDS   98 (295)
T ss_pred             ECCCCcEEEEEeehhhc--cccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEeeccC-cCHHHHHHH
Confidence            45688999999987532  1122335678899999999 56999999998876443 3345799999997 489998876


Q ss_pred             hccc-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-CCcEEEeecCcccc--------ccCCCccc
Q psy238           80 TKRN-VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT--------IENKKYLS  149 (218)
Q Consensus        80 ~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~--------~~~~~t~~  149 (218)
                      .... ...+++..++.++.||+.||.|||+  .+|+|+||+|+||+++. ++.++|+|||++..        ....+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~--~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  176 (295)
T cd07837          99 NGRGPGRPLPAKTIKSFMYQLLKGVAHCHK--HGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLW  176 (295)
T ss_pred             hcccCCCCCCHHHHHHHHHHHHHHHHHHHH--CCeeecCCChHHEEEecCCCeEEEeecccceecCCCccccCCcccccC
Confidence            5432 3468999999999999999999999  77999999999999998 89999999998764        22345788


Q ss_pred             ccccccCC---CCch----------hhhhhhCCCCCCcch
Q psy238          150 ATRQTYGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       150 y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+|||+..   ..+.          ++++++|..||.+..
T Consensus       177 ~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~  216 (295)
T cd07837         177 YRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDS  216 (295)
T ss_pred             CCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999632   2222          789999999997654

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.92  E-value=5.5e-24  Score=170.68  Aligned_cols=159  Identities=18%  Similarity=0.241  Sum_probs=128.0

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||+|.+...   ........+..|+.++..+.||||+++++++.+.+    ..++||||+++++|.+++....   ..
T Consensus        34 ~~~~ik~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~---~~  103 (268)
T cd05063          34 VAVAIKTLKPG---YTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFK----PAMIITEYMENGALDKYLRDHD---GE  103 (268)
T ss_pred             eEEEEEecccc---CCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCC----CcEEEEEcCCCCCHHHHHHhcC---CC
Confidence            37999988642   12344567889999999999999999999987654    4899999999999999997643   35


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccccc-----------CCCccccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIE-----------NKKYLSATRQTY  155 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~-----------~~~t~~y~aPE~  155 (218)
                      +++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++....           ...+..|+|||+
T Consensus       104 ~~~~~~~~~~~~l~~al~~lH~--~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~  181 (268)
T cd05063         104 FSSYQLVGMLRGIAAGMKYLSD--MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEA  181 (268)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH--CCeeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHH
Confidence            8999999999999999999999  779999999999999999999999999886421           122346999997


Q ss_pred             CC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          156 GR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       156 ~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      ..  .++.          +|++++ |..||.....
T Consensus       182 ~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~  216 (268)
T cd05063         182 IAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN  216 (268)
T ss_pred             hhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH
Confidence            22  2222          688887 9999976543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.92  E-value=2.8e-24  Score=171.76  Aligned_cols=160  Identities=23%  Similarity=0.249  Sum_probs=129.4

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||+|.+....     .....+.+|+.+++.++||||+++++++...     .+++||+|+++++|.+++....+ 
T Consensus        28 ~~~~~~a~K~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~v~e~~~~~~L~~~~~~~~~-   96 (260)
T cd05067          28 NGHTKVAIKSLKQGS-----MSPEAFLAEANLMKQLQHPRLVRLYAVVTQE-----PIYIITEYMENGSLVDFLKTPEG-   96 (260)
T ss_pred             CCCceEEEEEecCCC-----CcHHHHHHHHHHHHhcCCcCeeeEEEEEccC-----CcEEEEEcCCCCCHHHHHHhcCC-
Confidence            357889999887432     1235688899999999999999999887432     48999999999999999876532 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQT  154 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE  154 (218)
                       ..++...+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...         ...++..|+|||
T Consensus        97 -~~~~~~~~~~i~~~i~~al~~LH~--~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe  173 (260)
T cd05067          97 -IKLTINKLIDMAAQIAEGMAFIER--KNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPE  173 (260)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHhc--CCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHH
Confidence             458899999999999999999999  67999999999999999999999999988641         223456899999


Q ss_pred             cC--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          155 YG--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       155 ~~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      +.  ...+.          ++++++ |..||.+...
T Consensus       174 ~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~  209 (260)
T cd05067         174 AINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN  209 (260)
T ss_pred             HhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh
Confidence            63  22222          688998 9999976554

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.92  E-value=4.3e-24  Score=172.38  Aligned_cols=161  Identities=19%  Similarity=0.228  Sum_probs=133.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...   ........+.+|+.++..++||||+++++++....    .+|+||||+++++|..++..  
T Consensus        25 ~~~~~~~~aiK~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~l~~~i~~--   95 (277)
T cd06641          25 DNRTQKVVAIKIIDLE---EAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT----KLWIIMEYLGGGSALDLLEP--   95 (277)
T ss_pred             ECCCCcEEEEEEeccc---cchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCC----eEEEEEEeCCCCcHHHHHhc--
Confidence            4567899999988643   22345567889999999999999999999987644    58999999999999999864  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.|++.|+.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        96 ---~~~~~~~~~~~~~~l~~~l~~lh~--~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~P  170 (277)
T cd06641          96 ---GPLDETQIATILREILKGLDYLHS--EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAP  170 (277)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHcc--CCeecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCccccCh
Confidence               248899999999999999999999  7799999999999999999999999998754        234578899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |...  .++.          ++++++|..||....
T Consensus       171 E~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~  205 (277)
T cd06641         171 EVIKQSAYDSKADIWSLGITAIELAKGEPPHSELH  205 (277)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccc
Confidence            9732  2221          789999999997544

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.92  E-value=1.6e-24  Score=177.70  Aligned_cols=168  Identities=19%  Similarity=0.228  Sum_probs=132.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||.+..... ........+.+|+.++..++||||+++++++.+..  ...+++||||+. ++|.+++.......
T Consensus        26 ~~~~~alK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~~lv~e~~~-~~l~~~~~~~~~~~  101 (316)
T cd07842          26 DGKEYAIKKFKGDKE-QYTGISQSACREIALLRELKHENVVSLVEVFLEHA--DKSVYLLFDYAE-HDLWQIIKFHRQAK  101 (316)
T ss_pred             CCCeEEEEEeccccc-cccCccHHHHHHHHHHHhcCCCCccceEEEEeCCC--CceEEEEEeCCC-cCHHHHHHhhccCC
Confidence            789999999985321 11233456788999999999999999999997752  246999999996 58888776544322


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec----CCcEEEeecCcccc-----------ccCCCcc
Q psy238           85 -KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH----NGLVKIGCDTYTHT-----------IENKKYL  148 (218)
Q Consensus        85 -~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~----~~~~ki~dfg~~~~-----------~~~~~t~  148 (218)
                       ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.    ++.++|+|||++..           ....++.
T Consensus       102 ~~~~~~~~~~~i~~qi~~~l~~lH~--~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  179 (316)
T cd07842         102 RVSIPPSMVKSLLWQILNGVHYLHS--NWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTI  179 (316)
T ss_pred             CcCcCHHHHHHHHHHHHHHHHHHHh--CCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccc
Confidence             368999999999999999999999  77999999999999999    89999999998764           1235678


Q ss_pred             cccccccC--C-CCch----------hhhhhhCCCCCCcchhh
Q psy238          149 SATRQTYG--R-PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       149 ~y~aPE~~--~-~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .|+|||+.  . .++.          ++++++|..||.....+
T Consensus       180 ~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~  222 (316)
T cd07842         180 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAK  222 (316)
T ss_pred             cccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCccc
Confidence            89999962  1 2222          68999999999766543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.92  E-value=6e-24  Score=170.62  Aligned_cols=160  Identities=18%  Similarity=0.274  Sum_probs=128.1

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||.+...   ........+..|+.++..+.||||+++++++....    .+++||||+++++|.+++....   ..
T Consensus        33 ~~vaiK~~~~~---~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~---~~  102 (269)
T cd05065          33 IFVAIKTLKSG---YTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSR----PVMIITEFMENGALDSFLRQND---GQ  102 (269)
T ss_pred             eeEEEEEcCCC---CCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCC----ceEEEEecCCCCcHHHHHhhCC---CC
Confidence            46999988642   22445677899999999999999999999986644    5899999999999999987643   34


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccccc-----------C--CCccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIE-----------N--KKYLSATRQ  153 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~-----------~--~~t~~y~aP  153 (218)
                      +++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++....           .  ..+..|+||
T Consensus       103 ~~~~~~~~i~~~l~~al~~lH~--~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~P  180 (269)
T cd05065         103 FTVIQLVGMLRGIAAGMKYLSE--MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAP  180 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH--CCEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCH
Confidence            8899999999999999999999  779999999999999999999999999875411           0  113479999


Q ss_pred             ccCC--CCch----------hhhhhh-CCCCCCcchhh
Q psy238          154 TYGR--PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      |+..  .++.          ++++++ |..||......
T Consensus       181 E~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~  218 (269)
T cd05065         181 EAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ  218 (269)
T ss_pred             hHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHH
Confidence            9732  2221          688786 99999765543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.92  E-value=4.7e-24  Score=174.74  Aligned_cols=163  Identities=20%  Similarity=0.254  Sum_probs=132.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|.+..... ........+.+|+.++..++||||+++++++.+..    ..|+||||+. ++|.+++.... 
T Consensus        37 ~~~~~~v~iK~~~~~~~-~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~-g~l~~~~~~~~-  109 (307)
T cd06607          37 VRTNEVVAIKKMSYSGK-QSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREH----TAWLVMEYCL-GSASDILEVHK-  109 (307)
T ss_pred             cCCCcEEEEEEEecccc-CcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCC----eEEEEHHhhC-CCHHHHHHHcc-
Confidence            45789999999874322 22345567889999999999999999999998754    4899999996 68888776543 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccCC-
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYGR-  157 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~~-  157 (218)
                        ..+++..+..++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..    ....++..|+|||+.. 
T Consensus       110 --~~l~~~~~~~~~~ql~~~L~~LH~--~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~  185 (307)
T cd06607         110 --KPLQEVEIAAICHGALQGLAYLHS--HERIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVILA  185 (307)
T ss_pred             --cCCCHHHHHHHHHHHHHHHHHHHH--CCceecCCCcccEEECCCCCEEEeecCcceecCCCCCccCCccccCceeeec
Confidence              348999999999999999999999  6799999999999999999999999998865    3456788999999631 


Q ss_pred             ----CCch----------hhhhhhCCCCCCcch
Q psy238          158 ----PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       158 ----~~~~----------~~ei~tg~~p~~~~~  176 (218)
                          .++.          ++++++|..||....
T Consensus       186 ~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~  218 (307)
T cd06607         186 MDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  218 (307)
T ss_pred             cCCCCCCcccchHHHHHHHHHHHcCCCCCCCcc
Confidence                1221          689999999997544

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.92  E-value=4.6e-24  Score=169.71  Aligned_cols=159  Identities=20%  Similarity=0.212  Sum_probs=132.4

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||+|.+...      .....+.+|+.+++.++||||+++++++...    ..+|+++||+++++|.+++....  
T Consensus        26 ~~~~~~~~k~~~~~------~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~----~~~~l~~e~~~~~~L~~~l~~~~--   93 (256)
T cd06612          26 ETGQVVAIKVVPVE------EDLQEIIKEISILKQCDSPYIVKYYGSYFKN----TDLWIVMEYCGAGSVSDIMKITN--   93 (256)
T ss_pred             CCCcEEEEEEeecH------HHHHHHHHHHHHHHhCCCCcEeeeeeeeecC----CcEEEEEecCCCCcHHHHHHhCc--
Confidence            45789999998742      1267888999999999999999999998765    36899999999999999987543  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQTY  155 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE~  155 (218)
                       ..+++..++.++.|++.||.|||+  .+++|+||+|.||+++.++.++|+|||++..        ....++..|+|||+
T Consensus        94 -~~l~~~~~~~~~~~l~~~l~~lh~--~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~  170 (256)
T cd06612          94 -KTLTEEEIAAILYQTLKGLEYLHS--NKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEV  170 (256)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHH
Confidence             358999999999999999999999  6699999999999999999999999998765        12346789999997


Q ss_pred             C--CCCch----------hhhhhhCCCCCCcchh
Q psy238          156 G--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      .  ..++.          ++++++|..||.....
T Consensus       171 ~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~  204 (256)
T cd06612         171 IQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHP  204 (256)
T ss_pred             HhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcch
Confidence            2  22222          6889999999976443

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.92  E-value=4e-24  Score=170.78  Aligned_cols=162  Identities=23%  Similarity=0.340  Sum_probs=134.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+......  ......+..|+.+++.++|+||+++++++....    .+++|+||+++++|.+++... 
T Consensus        21 ~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~-   93 (264)
T cd06626          21 NLDTGELMAVKEIRIQDND--PKTIKEIADEMKVLELLKHPNLVKYYGVEVHRE----KVYIFMEYCSGGTLEELLEHG-   93 (264)
T ss_pred             ECCCCcEEEEEEEECcccc--hHHHHHHHHHHHHHHhCCCCChhheeeeEecCC----EEEEEEecCCCCcHHHHHhhc-
Confidence            3457899999999854222  456778999999999999999999999876543    589999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc------------cCCCccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI------------ENKKYLS  149 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~------------~~~~t~~  149 (218)
                         ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+...            ...++..
T Consensus        94 ---~~~~~~~~~~i~~~i~~~l~~lh~--~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~  168 (264)
T cd06626          94 ---RILDEHVIRVYTLQLLEGLAYLHS--HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPA  168 (264)
T ss_pred             ---CCCChHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcC
Confidence               347889999999999999999999  77999999999999999999999999987651            2456789


Q ss_pred             ccccccCCCCc-----h----------hhhhhhCCCCCCcc
Q psy238          150 ATRQTYGRPIS-----G----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~~~~~~-----~----------~~ei~tg~~p~~~~  175 (218)
                      |+|||+.....     .          ++++++|..||...
T Consensus       169 ~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~  209 (264)
T cd06626         169 YMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSEL  209 (264)
T ss_pred             ccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCC
Confidence            99999733211     1          69999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=5.7e-24  Score=171.73  Aligned_cols=159  Identities=17%  Similarity=0.254  Sum_probs=129.3

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      .||+|.+...   ........+.+|+.+++.+.||||+++++++..     ...++||+|+++++|.+++....   ..+
T Consensus        38 ~~aik~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~v~e~~~~g~L~~~l~~~~---~~~  106 (279)
T cd05057          38 PVAIKVLREE---TSPKANKEILDEAYVMASVDHPHVVRLLGICLS-----SQVQLITQLMPLGCLLDYVRNHK---DNI  106 (279)
T ss_pred             EEEEEeccCC---CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----CceEEEEecCCCCcHHHHHHhcc---CCC
Confidence            5899987642   224556778899999999999999999999876     24899999999999999997643   348


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccccccCC
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATRQTYGR  157 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~aPE~~~  157 (218)
                      ++..+..++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...          ...++..|+|||...
T Consensus       107 ~~~~~~~~~~qi~~~l~~LH~--~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (279)
T cd05057         107 GSQYLLNWCVQIAKGMSYLEE--KRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESIL  184 (279)
T ss_pred             CHHHHHHHHHHHHHHHHHHHh--CCEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhh
Confidence            999999999999999999999  77999999999999999999999999988641          112246799999632


Q ss_pred             --CCch----------hhhhhh-CCCCCCcchhhh
Q psy238          158 --PISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       158 --~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                        .++.          ++++++ |..||.+...++
T Consensus       185 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~  219 (279)
T cd05057         185 HRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVE  219 (279)
T ss_pred             cCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHH
Confidence              2221          688888 999998765443

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.92  E-value=1.1e-24  Score=176.11  Aligned_cols=162  Identities=20%  Similarity=0.240  Sum_probs=131.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|.+....  ........+.+|+.+++.++||||+++++++....    .+|+||||+++++|..+....  
T Consensus        23 ~~~~~~~~iK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~--   94 (286)
T cd07846          23 KETGQIVAIKKFLESE--DDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKK----RLYLVFEFVDHTVLDDLEKYP--   94 (286)
T ss_pred             CCCCCEEEEEeHhhcc--CcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCC----eEEEEEecCCccHHHHHHhcc--
Confidence            4578999999887432  22234567888999999999999999999986543    689999999988888776543  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                        ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....++..|+|||
T Consensus        95 --~~~~~~~~~~~~~~i~~~l~~LH~--~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  170 (286)
T cd07846          95 --NGLDESRVRKYLFQILRGIEFCHS--HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPE  170 (286)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcH
Confidence              238999999999999999999999  7799999999999999999999999998764        1235678899999


Q ss_pred             cCC--C-Cch----------hhhhhhCCCCCCcch
Q psy238          155 YGR--P-ISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~~~--~-~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +..  . .+.          ++++++|..||....
T Consensus       171 ~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~  205 (286)
T cd07846         171 LLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDS  205 (286)
T ss_pred             HhccccccCchHhHHHHHHHHHHHHcCCCCCCCCc
Confidence            732  1 111          689999999996543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.92  E-value=7.6e-24  Score=172.73  Aligned_cols=161  Identities=16%  Similarity=0.209  Sum_probs=126.7

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc----
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR----   82 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----   82 (218)
                      .+|+|.+..   .......+.+.+|+.++.++ +||||+++++++...+    .+|+||+|+++++|.+++.....    
T Consensus        31 ~~~ik~~~~---~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~~~~  103 (297)
T cd05089          31 NAAIKMLKE---FASENDHRDFAGELEVLCKLGHHPNIINLLGACENRG----YLYIAIEYAPYGNLLDFLRKSRVLETD  103 (297)
T ss_pred             eeEEEEccc---cCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCC----cceEEEEecCCCcHHHHHHhccccccc
Confidence            468887762   12234456788999999999 7999999999986643    58999999999999999976421    


Q ss_pred             --------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCc
Q psy238           83 --------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKY  147 (218)
Q Consensus        83 --------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t  147 (218)
                              ....+++..++.++.|++.||.|||+  ++|+|+||+|+|||++.++.++|+|||++..       .....+
T Consensus       104 ~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~--~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  181 (297)
T cd05089         104 PAFAKEHGTASTLTSQQLLQFASDVATGMQYLSE--KQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLP  181 (297)
T ss_pred             cccccccCccCCCCHHHHHHHHHHHHHHHHHHHH--CCcccCcCCcceEEECCCCeEEECCcCCCccccceeccCCCCcC
Confidence                    11348899999999999999999999  7799999999999999999999999998753       112335


Q ss_pred             ccccccccCC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          148 LSATRQTYGR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       148 ~~y~aPE~~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      ..|+|||+..  .++.          +++|+| |..||.....
T Consensus       182 ~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~  224 (297)
T cd05089         182 VRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC  224 (297)
T ss_pred             ccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH
Confidence            5799999732  2222          688987 9999976544

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.92  E-value=3.2e-24  Score=171.52  Aligned_cols=162  Identities=20%  Similarity=0.246  Sum_probs=135.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...   ........+.+|+.+++.+.||||+++++++....    .+++|++|+++++|.+++....
T Consensus        22 ~~~~~~~~~ik~~~~~---~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~   94 (265)
T cd06605          22 HRPTGKIMAVKTIRLE---INEAIQKQILRELDILHKCNSPYIVGFYGAFYNNG----DISICMEYMDGGSLDKILKEVQ   94 (265)
T ss_pred             EcCCCcEEEEEEEecc---cChHHHHHHHHHHHHHHHCCCCchhhhheeeecCC----EEEEEEEecCCCcHHHHHHHcc
Confidence            3457899999998753   22355677889999999999999999999987653    6899999999899999998653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE  154 (218)
                         ..+++..+..++.|++.||.|||+ .+  ++|+||+|+||+++.++.++|+|||.+..      ....++..|+|||
T Consensus        95 ---~~~~~~~~~~~~~~l~~~l~~lH~~~~--i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE  169 (265)
T cd06605          95 ---GRIPERILGKIAVAVLKGLTYLHEKHK--IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPE  169 (265)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHcCCCC--eecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcccCChhccCHH
Confidence               458999999999999999999999 66  99999999999999999999999998764      2366788999999


Q ss_pred             cC--CCCch----------hhhhhhCCCCCCcc
Q psy238          155 YG--RPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       155 ~~--~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      +.  ..++.          ++++++|..||...
T Consensus       170 ~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  202 (265)
T cd06605         170 RIQGNDYSVKSDIWSLGLSLIELATGRFPYPPE  202 (265)
T ss_pred             HHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            72  22222          68899999999765

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.92  E-value=5.3e-24  Score=171.06  Aligned_cols=159  Identities=21%  Similarity=0.296  Sum_probs=128.1

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||.+...   ......+.+.+|+.+++.+.||||+++++++.+.     ..|+||||+++++|.+++....   ..
T Consensus        35 ~~v~ik~~~~~---~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~---~~  103 (270)
T cd05056          35 IAVAVKTCKNC---TSPSVREKFLQEAYIMRQFDHPHIVKLIGVITEN-----PVWIVMELAPLGELRSYLQVNK---YS  103 (270)
T ss_pred             cceEEEecCCc---CCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCC-----CcEEEEEcCCCCcHHHHHHhCC---CC
Confidence            46899988742   2244567889999999999999999999988653     3689999999999999997643   34


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccccccC-
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTYG-  156 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~~-  156 (218)
                      +++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...         ...++..|+|||.. 
T Consensus       104 ~~~~~~~~~~~~l~~~l~~lH~--~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  181 (270)
T cd05056         104 LDLASLILYSYQLSTALAYLES--KRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESIN  181 (270)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHh--CCeeccccChheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhc
Confidence            8999999999999999999999  67999999999999999999999999987641         22234679999962 


Q ss_pred             -CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          157 -RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       157 -~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                       ..++.          ++++++ |..||......
T Consensus       182 ~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~  215 (270)
T cd05056         182 FRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNN  215 (270)
T ss_pred             cCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHH
Confidence             22222          578775 99999766543

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.92  E-value=2.6e-24  Score=175.28  Aligned_cols=159  Identities=21%  Similarity=0.291  Sum_probs=131.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...    .......+.+|+.++..++||||+++++++....    ..|+|+||+++++|.+++... 
T Consensus        40 ~~~~~~~v~iK~~~~~----~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~-  110 (293)
T cd06647          40 DVATGQEVAIKQMNLQ----QQPKKELIINEILVMRENKHPNIVNYLDSYLVGD----ELWVVMEYLAGGSLTDVVTET-  110 (293)
T ss_pred             EcCCCCEEEEEEeccc----cchHHHHHHHHHHHHhhcCCCCeeehhheeeeCC----cEEEEEecCCCCcHHHHHhhc-
Confidence            4567889999998632    1233467888999999999999999999987654    589999999999999998753 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..        ....+++.|+||
T Consensus       111 ----~l~~~~~~~i~~~l~~al~~LH~--~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~P  184 (293)
T cd06647         111 ----CMDEGQIAAVCRECLQALEFLHS--NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP  184 (293)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCEeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCc
Confidence                37889999999999999999999  7799999999999999999999999998754        234577889999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcc
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+..  .++.          ++++++|..||...
T Consensus       185 E~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~  218 (293)
T cd06647         185 EVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (293)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9722  2222          68999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.92  E-value=3.4e-24  Score=175.65  Aligned_cols=168  Identities=21%  Similarity=0.264  Sum_probs=132.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+......  ......+.+|+.++..++|+||+++++++....  ...+++||||+. ++|.+++....
T Consensus        28 ~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~~lv~e~~~-~~l~~~l~~~~  102 (309)
T cd07845          28 DTTSGEIVALKKVRMDNER--DGIPISSLREITLLLNLRHPNIVELKEVVVGKH--LDSIFLVMEYCE-QDLASLLDNMP  102 (309)
T ss_pred             ECCCCcEEEEEEEEeccCC--CCCcchhhHHHHHHHhCCCCCCcceEEEEecCC--CCeEEEEEecCC-CCHHHHHHhcc
Confidence            4568999999999754221  122234567999999999999999999987532  235899999996 58998887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------cCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------ENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...        ...++..|+||
T Consensus       103 ---~~l~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aP  177 (309)
T cd07845         103 ---TPFSESQVKCLMLQLLRGLQYLHE--NFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAP  177 (309)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEECCCCCEEECccceeeecCCccCCCCcccccccccCh
Confidence               458999999999999999999999  77999999999999999999999999988652        22346789999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+..   .++.          ++++++|..||......+
T Consensus       178 E~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~  216 (309)
T cd07845         178 ELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIE  216 (309)
T ss_pred             hhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            9732   1222          699999999997665443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.92  E-value=9.2e-24  Score=172.08  Aligned_cols=166  Identities=22%  Similarity=0.285  Sum_probs=130.0

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN-   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-   83 (218)
                      ++..||+|++...   ........+.+|+.++..++||||+++++++...+    .+++||||+++++|.+++...... 
T Consensus        45 ~~~~~a~K~~~~~---~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~~  117 (296)
T cd05095          45 QPVLVAVKMLRED---ANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSD----PLCMITEYMENGDLNQFLSRHEPQE  117 (296)
T ss_pred             ceeEEEEEecccc---CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC----ccEEEEEeCCCCcHHHHHHhcCccc
Confidence            3457999998742   22445668889999999999999999999987654    489999999999999999864321 


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCc
Q psy238           84 ------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKY  147 (218)
Q Consensus        84 ------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t  147 (218)
                            ...+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...          ...++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~--~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  195 (296)
T cd05095         118 AAEKADVVTISYSTLIFMATQIASGMKYLSS--LNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLP  195 (296)
T ss_pred             ccccccccccCHHHHHHHHHHHHHHHHHHHH--CCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCc
Confidence                  1237788999999999999999999  66999999999999999999999999988641          12235


Q ss_pred             cccccccc--CCCCch----------hhhhhh--CCCCCCcchhhh
Q psy238          148 LSATRQTY--GRPISG----------QYEIVT--KTNNVTEKKKEK  179 (218)
Q Consensus       148 ~~y~aPE~--~~~~~~----------~~ei~t--g~~p~~~~~~ee  179 (218)
                      ..|+|||+  +..++.          +|++++  |..||......+
T Consensus       196 ~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~  241 (296)
T cd05095         196 IRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQ  241 (296)
T ss_pred             cccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHH
Confidence            67999995  223332          688887  778887654433

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.92  E-value=1.8e-24  Score=179.43  Aligned_cols=164  Identities=17%  Similarity=0.190  Sum_probs=131.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||.+...   ........+..|+.+++.++||||+++++++..... ....+|+|++|+. ++|..++.. 
T Consensus        26 ~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~-  100 (336)
T cd07849          26 HKPTGVKVAIKKISPF---EHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQELME-TDLYKLIKT-  100 (336)
T ss_pred             EcCCCCeEEEEEeccc---ccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehhcc-cCHHHHHhc-
Confidence            5678999999998632   223445667889999999999999999988765432 2346899999996 588887754 


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------cCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------ENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------~~~~t~~  149 (218)
                          ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++...           ...++..
T Consensus       101 ----~~l~~~~~~~i~~ql~~aL~~LH~--~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  174 (336)
T cd07849         101 ----QHLSNDHIQYFLYQILRGLKYIHS--ANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRW  174 (336)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCC
Confidence                348999999999999999999999  77999999999999999999999999987641           2356888


Q ss_pred             ccccccC---CCCch----------hhhhhhCCCCCCcch
Q psy238          150 ATRQTYG---RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       150 y~aPE~~---~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+|||..   ..++.          ++++++|+.||.+..
T Consensus       175 y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~  214 (336)
T cd07849         175 YRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKD  214 (336)
T ss_pred             ccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999962   12222          689999999997643

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.92  E-value=4.7e-24  Score=171.42  Aligned_cols=163  Identities=20%  Similarity=0.300  Sum_probs=132.1

Q ss_pred             CCCCCcEEEEEEeecccccc------cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKN------FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~------~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      +..+|..||||.+.......      .....+.+..|+.++..++||||+++++++....    .+++||||+++++|.+
T Consensus        22 ~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~   97 (272)
T cd06629          22 NVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE----YLSIFLEYVPGGSIGS   97 (272)
T ss_pred             ecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC----ceEEEEecCCCCcHHH
Confidence            45688999999886421111      1123456788999999999999999999886643    5899999999999999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCC
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENK  145 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~  145 (218)
                      ++...    ..++...+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...          ...
T Consensus        98 ~l~~~----~~l~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~  171 (272)
T cd06629          98 CLRTY----GRFEEQLVRFFTEQVLEGLAYLHS--KGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQ  171 (272)
T ss_pred             HHhhc----cCCCHHHHHHHHHHHHHHHHHHhh--CCeeecCCChhhEEEcCCCeEEEeecccccccccccccccccccc
Confidence            99765    348999999999999999999999  77999999999999999999999999988641          235


Q ss_pred             CcccccccccCC--C--Cch----------hhhhhhCCCCCCc
Q psy238          146 KYLSATRQTYGR--P--ISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       146 ~t~~y~aPE~~~--~--~~~----------~~ei~tg~~p~~~  174 (218)
                      ++..|+|||+..  .  ++.          ++++++|..||..
T Consensus       172 ~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~  214 (272)
T cd06629         172 GSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSD  214 (272)
T ss_pred             CCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcC
Confidence            788999999622  1  221          6899999999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.92  E-value=3.1e-24  Score=174.85  Aligned_cols=159  Identities=17%  Similarity=0.253  Sum_probs=131.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||.+...    .......+.+|+.+++.++||||+++++++....    ..++||||+++++|.+++..   
T Consensus        42 ~~~~~~v~iK~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~---  110 (292)
T cd06657          42 KSSGKLVAVKKMDLR----KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD----ELWVVMEFLEGGALTDIVTH---  110 (292)
T ss_pred             cCCCeEEEEEEeccc----chhHHHHHHHHHHHHHhcCCcchhheeeEEEeCC----EEEEEEecCCCCcHHHHHhc---
Confidence            467899999988632    2345567889999999999999999999987644    68999999999999998754   


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                        ..+++..+..++.|++.||.|||+  .|++|+||+|+||+++.++.++|+|||++..        ....+++.|+|||
T Consensus       111 --~~~~~~~~~~~~~ql~~~l~~lH~--~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE  186 (292)
T cd06657         111 --TRMNEEQIAAVCLAVLKALSVLHA--QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPE  186 (292)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCccccCHH
Confidence              248899999999999999999999  7799999999999999999999999998754        2245788899999


Q ss_pred             cCC--CCch----------hhhhhhCCCCCCcch
Q psy238          155 YGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +..  .++.          ++++++|..||....
T Consensus       187 ~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~  220 (292)
T cd06657         187 LISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP  220 (292)
T ss_pred             HhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            732  2222          689999999997543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.92  E-value=5.9e-24  Score=173.71  Aligned_cols=168  Identities=17%  Similarity=0.205  Sum_probs=131.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC----CCCeEEEEEeccCCCCHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN----DKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~----~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +..+|..||||.+.....  .......+.+|+.+++.+.||||+++++++.....    .....++||||+. ++|.+++
T Consensus        33 ~~~~~~~~aik~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l  109 (310)
T cd07865          33 HKKTKQIVALKKVLMENE--KEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCE-HDLAGLL  109 (310)
T ss_pred             ECCCCcEEEEEEEeccCC--cCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEEEEcCCC-cCHHHHH
Confidence            356889999999874321  12233455689999999999999999998866432    2346799999995 6898888


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc------------cCC
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI------------ENK  145 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~------------~~~  145 (218)
                      ....   ..+++..++.++.|++.||.|||+  ++++|+||+|+||+++.++.++|+|||++...            ...
T Consensus       110 ~~~~---~~~~~~~~~~i~~qi~~al~~lH~--~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  184 (310)
T cd07865         110 SNKN---VKFTLSEIKKVMKMLLNGLYYIHR--NKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRV  184 (310)
T ss_pred             Hhcc---cCCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcc
Confidence            6543   348999999999999999999999  77999999999999999999999999988641            234


Q ss_pred             CcccccccccCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          146 KYLSATRQTYGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       146 ~t~~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ++..|+|||+..   ..+.          ++++++|..||.+...
T Consensus       185 ~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~  229 (310)
T cd07865         185 VTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTE  229 (310)
T ss_pred             cCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            577899999632   1112          7999999999976543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.92  E-value=4.5e-24  Score=173.50  Aligned_cols=166  Identities=21%  Similarity=0.259  Sum_probs=133.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+......  ......+.+|+.++..++||||+++++++....  ...+|+||||+. ++|.+++....
T Consensus        26 ~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~--~~~~~lv~e~~~-~~L~~~~~~~~  100 (293)
T cd07843          26 DKKTGEIVALKKLKMEKEK--EGFPITSLREINILLKLQHPNIVTVKEVVVGSN--LDKIYMVMEYVE-HDLKSLMETMK  100 (293)
T ss_pred             ECCCCcEEEEEEEeecccc--ccchhhHHHHHHHHHhcCCCCEEEEEEEEEecC--CCcEEEEehhcC-cCHHHHHHhcc
Confidence            3457889999999754222  233345678999999999999999999887642  246999999996 59999887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..        ....++..|+||
T Consensus       101 ---~~l~~~~~~~i~~qi~~aL~~LH~--~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aP  175 (293)
T cd07843         101 ---QPFLQSEVKCLMLQLLSGVAHLHD--NWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAP  175 (293)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeccCCHHHEEECCCCcEEEeecCceeeccCCccccccccccccccCc
Confidence               258999999999999999999999  6799999999999999999999999998775        223467889999


Q ss_pred             ccC--CC-Cch----------hhhhhhCCCCCCcchh
Q psy238          154 TYG--RP-ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~--~~-~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+.  .. .+.          ++++++|..||.+...
T Consensus       176 E~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~  212 (293)
T cd07843         176 ELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSE  212 (293)
T ss_pred             hhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCCh
Confidence            962  21 122          6899999999986554

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.92  E-value=4.9e-24  Score=174.37  Aligned_cols=157  Identities=15%  Similarity=0.239  Sum_probs=126.0

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      .||+|.+...   ........+.+|+.++..+.||||+++++++...     ..+++++|+++|+|.+++....   ..+
T Consensus        38 ~vaiK~~~~~---~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-----~~~~v~e~~~~g~l~~~~~~~~---~~~  106 (303)
T cd05110          38 PVAIKILNET---TGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-----TIQLVTQLMPHGCLLDYVHEHK---DNI  106 (303)
T ss_pred             eEEEEecccc---CCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-----CceeeehhcCCCCHHHHHHhcc---cCC
Confidence            5788888642   2234445688899999999999999999998653     2679999999999999987643   348


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccccccC-
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTYG-  156 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~~-  156 (218)
                      ++..++.++.|++.||.|||+  ++|+|+||+|+|||++.++.++|+|||++..          ....++..|+|||+. 
T Consensus       107 ~~~~~~~~~~qi~~~L~~LH~--~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (303)
T cd05110         107 GSQLLLNWCVQIAKGMMYLEE--RRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIH  184 (303)
T ss_pred             CHHHHHHHHHHHHHHHHHHhh--cCeeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhc
Confidence            899999999999999999999  7799999999999999999999999998864          122346689999962 


Q ss_pred             -CCCch----------hhhhhh-CCCCCCcchh
Q psy238          157 -RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       157 -~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                       ..++.          ++++++ |..||.+...
T Consensus       185 ~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~  217 (303)
T cd05110         185 YRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPT  217 (303)
T ss_pred             cCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence             33332          688887 8999976543

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=6.3e-24  Score=169.58  Aligned_cols=160  Identities=25%  Similarity=0.276  Sum_probs=129.4

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||||.+....     .....+.+|+.+++.++||||+++++++....    .+++||+|+++++|.+++.....  
T Consensus        29 ~~~~~~vK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~i~~~~~--   97 (261)
T cd05034          29 GTTKVAVKTLKPGT-----MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEE----PIYIVTEYMSKGSLLDFLKSGEG--   97 (261)
T ss_pred             CCceEEEEEecCCc-----cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCC----ceEEEEeccCCCCHHHHHhcccc--
Confidence            45679999887432     22356888999999999999999999886543    48999999999999999976532  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~  155 (218)
                      ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+...         ....+..|+|||.
T Consensus        98 ~~~~~~~~~~~~~~i~~al~~lh~--~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~  175 (261)
T cd05034          98 KKLRLPQLVDMAAQIAEGMAYLES--RNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEA  175 (261)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHH
Confidence            358999999999999999999999  77999999999999999999999999987642         2234567999997


Q ss_pred             C--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          156 G--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       156 ~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      .  ...+.          ++++++ |+.||.+...
T Consensus       176 ~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~  210 (261)
T cd05034         176 ANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN  210 (261)
T ss_pred             hccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            3  22232          678888 9999976543

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.92  E-value=2.2e-24  Score=174.47  Aligned_cols=163  Identities=19%  Similarity=0.234  Sum_probs=130.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||.+....  ........+.+|+++++.+.||||+++++++...+    .+++||||++++.+..++... 
T Consensus        22 ~~~~~~~v~vK~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~iv~e~~~~~~l~~~~~~~-   94 (288)
T cd07833          22 NKATGEIVAIKKFKESE--DDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKG----RLYLVFEYVERTLLELLEASP-   94 (288)
T ss_pred             eCCCCcEEEEehhhhhc--ccccchhHHHHHHHHHHhcCCCCeeehhheEEECC----EEEEEEecCCCCHHHHHHhcC-
Confidence            45678999999887432  22345577889999999999999999999987643    589999999875565554432 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         ..++...++.++.||+.||.|||+  .+++|+||+|+||+++.++.++|+|||++..         ....++..|+|
T Consensus        95 ---~~~~~~~~~~~~~~i~~~l~~LH~--~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~  169 (288)
T cd07833          95 ---GGLPPDAVRSYIWQLLQAIAYCHS--HNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRA  169 (288)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcC
Confidence               348999999999999999999999  7799999999999999999999999998765         12345788999


Q ss_pred             cccCCCC---ch----------hhhhhhCCCCCCcch
Q psy238          153 QTYGRPI---SG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~~~~~---~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||+....   +.          ++++++|..||.+..
T Consensus       170 PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~  206 (288)
T cd07833         170 PELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDS  206 (288)
T ss_pred             CchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9973222   11          689999999997654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=1.6e-24  Score=186.49  Aligned_cols=153  Identities=15%  Similarity=0.171  Sum_probs=124.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..||||....          ..+.+|+.+|+.++||||+++++++...+    ..|+||+++. ++|..++....
T Consensus       190 ~~~~~~~vavK~~~~----------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~----~~~lv~e~~~-~~L~~~l~~~~  254 (461)
T PHA03211        190 HPDYPQRVVVKAGWY----------ASSVHEARLLRRLSHPAVLALLDVRVVGG----LTCLVLPKYR-SDLYTYLGARL  254 (461)
T ss_pred             ECCCCCEEEEecccc----------cCHHHHHHHHHHCCCCCCCcEEEEEEECC----EEEEEEEccC-CCHHHHHHhcC
Confidence            445678899995431          23467999999999999999999987643    5899999994 79998887543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..          ....||..|+
T Consensus       255 ---~~l~~~~~~~i~~qi~~aL~yLH~--~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~  329 (461)
T PHA03211        255 ---RPLGLAQVTAVARQLLSAIDYIHG--EGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTN  329 (461)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCc
Confidence               358999999999999999999999  7799999999999999999999999998764          1346899999


Q ss_pred             ccccC--CCCch----------hhhhhhCCCCCCc
Q psy238          152 RQTYG--RPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       152 aPE~~--~~~~~----------~~ei~tg~~p~~~  174 (218)
                      |||+.  ..++.          +|++++|..|+..
T Consensus       330 APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~  364 (461)
T PHA03211        330 APEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFS  364 (461)
T ss_pred             CHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCccc
Confidence            99973  33333          6888888776643

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=9e-24  Score=172.06  Aligned_cols=164  Identities=20%  Similarity=0.266  Sum_probs=127.9

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc----
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR----   82 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----   82 (218)
                      ..||+|.+...   ........+.+|++++..++||||+++++++....    .+++||||+++++|.+++.....    
T Consensus        45 ~~vavK~~~~~---~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~~~~  117 (295)
T cd05097          45 VLVAVKMLRAD---VTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDD----PLCMITEYMENGDLNQFLSQREIESTF  117 (295)
T ss_pred             eEEEEEecCCC---CCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCCC----ccEEEEecCCCCcHHHHHHhccccccc
Confidence            35899988742   22445567889999999999999999999987644    58999999999999999865421    


Q ss_pred             ----cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcc
Q psy238           83 ----NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYL  148 (218)
Q Consensus        83 ----~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~  148 (218)
                          ....+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...          ...++.
T Consensus       118 ~~~~~~~~~~~~~~~~i~~~i~~al~~lH~--~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~  195 (295)
T cd05097         118 THANNIPSVSIANLLYMAVQIASGMKYLAS--LNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPI  195 (295)
T ss_pred             cccccCCcccHHHHHHHHHHHHHHHHHHHh--cCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCce
Confidence                11236888999999999999999999  77999999999999999999999999987641          123367


Q ss_pred             cccccccC--CCCch----------hhhhhh--CCCCCCcchhhh
Q psy238          149 SATRQTYG--RPISG----------QYEIVT--KTNNVTEKKKEK  179 (218)
Q Consensus       149 ~y~aPE~~--~~~~~----------~~ei~t--g~~p~~~~~~ee  179 (218)
                      .|+|||+.  ..++.          ++++++  |..||.....++
T Consensus       196 ~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~  240 (295)
T cd05097         196 RWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQ  240 (295)
T ss_pred             eecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHH
Confidence            89999962  22222          678877  667777655433

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.92  E-value=6.5e-24  Score=175.95  Aligned_cols=164  Identities=17%  Similarity=0.242  Sum_probs=129.2

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc---
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR---   82 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---   82 (218)
                      ..||+|.+...   ........+.+|+.++..+ .||||+++++++...+    .++++|+|+++++|.+++.....   
T Consensus        45 ~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~~~~~  117 (334)
T cd05100          45 VTVAVKMLKDD---ATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG----PLYVLVEYASKGNLREYLRARRPPGM  117 (334)
T ss_pred             eeEEEEEcccc---cCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC----ceEEEEecCCCCcHHHHHHhcCCccc
Confidence            47899988632   2234556788999999999 8999999999987644    58999999999999999976421   


Q ss_pred             ---------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------cc
Q psy238           83 ---------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IE  143 (218)
Q Consensus        83 ---------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~  143 (218)
                               ....+++..+..++.|++.||.|||+  ++++||||+|+|||++.++.++|+|||++..          ..
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~--~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~  195 (334)
T cd05100         118 DYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLAS--QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTN  195 (334)
T ss_pred             ccccccccCccccCCHHHHHHHHHHHHHHHHHHHH--CCeeccccccceEEEcCCCcEEECCcccceecccccccccccC
Confidence                     11347888899999999999999999  7799999999999999999999999998764          11


Q ss_pred             CCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          144 NKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       144 ~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ..++..|+|||+.  ..++.          +++|++ |..||.+...++
T Consensus       196 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~  244 (334)
T cd05100         196 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE  244 (334)
T ss_pred             CCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence            2334679999963  22222          688888 888887654433

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.92  E-value=4.7e-24  Score=173.48  Aligned_cols=165  Identities=16%  Similarity=0.203  Sum_probs=129.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+.....  .......+.+|+.+++.++||||+++++++.+..    ..|+||||++ ++|.+++....
T Consensus        23 ~~~~~~~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~   95 (294)
T PLN00009         23 DRVTNETIALKKIRLEQE--DEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK----RLYLVFEYLD-LDLKKHMDSSP   95 (294)
T ss_pred             ecCCCcEEEEEehhhccc--cccchHHHHHHHHHHHhccCCCEeeEEEEEecCC----eEEEEEeccc-ccHHHHHHhCC
Confidence            456889999999875321  1234456788999999999999999999987643    6899999995 68888876543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-CCcEEEeecCcccc--------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .  ..+++..++.++.||+.||.|||+  ++++|+||+|+||+++. ++.++|+|||++..        ....+++.|+|
T Consensus        96 ~--~~~~~~~~~~~~~qi~~aL~~LH~--~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~  171 (294)
T PLN00009         96 D--FAKNPRLIKTYLYQILRGIAYCHS--HRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRA  171 (294)
T ss_pred             C--CCcCHHHHHHHHHHHHHHHHHHHh--CCeeCCCCCcceEEEECCCCEEEEcccccccccCCCccccccCceeecccC
Confidence            2  346788999999999999999999  77999999999999985 56799999998864        22345788999


Q ss_pred             cccCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+..   .++.          +++++||..||.....
T Consensus       172 PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~  209 (294)
T PLN00009        172 PEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSE  209 (294)
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            99621   2222          6899999999976543

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.92  E-value=4.7e-24  Score=172.35  Aligned_cols=165  Identities=18%  Similarity=0.248  Sum_probs=133.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++.....  .......+.+|+.+++.++|||++++++++.+.    ...|+||+|++ ++|.+++....
T Consensus        20 ~~~~~~~~~ik~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~----~~~~iv~e~~~-~~l~~~~~~~~   92 (283)
T cd07835          20 DKLTGEIVALKKIRLETE--DEGVPSTAIREISLLKELNHPNIVRLLDVVHSE----NKLYLVFEFLD-LDLKKYMDSSP   92 (283)
T ss_pred             EcCCCCEEEEEEeecccc--cccchhHHHHHHHHHHhcCCCCccCHhheeccC----CeEEEEEeccC-cCHHHHHhhCC
Confidence            456899999999975421  123345678899999999999999999998764    36899999995 79999987654


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .  ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..        ....++..|+||
T Consensus        93 ~--~~~~~~~~~~~~~~i~~~L~~lH~--~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aP  168 (283)
T cd07835          93 L--TGLDPPLIKSYLYQLLQGIAYCHS--HRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAP  168 (283)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHH--CCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCC
Confidence            2  358999999999999999999999  7799999999999999999999999998764        223457889999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..   .++.          ++++++|..||.....
T Consensus       169 E~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~  205 (283)
T cd07835         169 EILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSE  205 (283)
T ss_pred             ceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9632   2222          6899999999976543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.92  E-value=3e-24  Score=169.77  Aligned_cols=155  Identities=17%  Similarity=0.251  Sum_probs=124.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|.+....         ....+...+....||||+++++++....    .+|+||||+++++|.+++....
T Consensus        14 ~~~~~~~~~~K~i~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~   80 (237)
T cd05576          14 DTRTQQTFILKGLRKSS---------EYSRERLTIIPHCVPNMVCLHKYIVSED----SVFLVLQHAEGGKLWSHISKFL   80 (237)
T ss_pred             EccCCcEEEEEeecchh---------hhhhHHHHHHhcCCCceeehhhheecCC----eEEEEEecCCCCCHHHHHHHhc
Confidence            67899999999997421         1223344445567999999999887643    5899999999999999987653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYG  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~  156 (218)
                          .+++..+..++.|++.||.|||+  .+|+|+||+|+||+++.++.++++|||.+..     ....++..|+|||..
T Consensus        81 ----~l~~~~~~~~~~ql~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~  154 (237)
T cd05576          81 ----NIPEECVKRWAAEMVVALDALHR--EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVG  154 (237)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCccc
Confidence                38999999999999999999999  7799999999999999999999999997654     234456779999973


Q ss_pred             C--CCch----------hhhhhhCCCCCCcc
Q psy238          157 R--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       157 ~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      .  +.+.          ++++++|..|+...
T Consensus       155 ~~~~~~~~~DvwslG~il~el~~g~~~~~~~  185 (237)
T cd05576         155 GISEETEACDWWSLGAILFELLTGKTLVECH  185 (237)
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHCcchhhcC
Confidence            2  2222          68999999887543

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.92  E-value=6.2e-24  Score=170.86  Aligned_cols=157  Identities=17%  Similarity=0.184  Sum_probs=124.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..+|+|++.......         .|+.....+ +||||++++++|...+    .+|+||||+++++|.+++...
T Consensus        37 ~~~~~~~~~~k~~~~~~~~~---------~e~~~~~~~~~h~~iv~~~~~~~~~~----~~~iv~e~~~~~~L~~~l~~~  103 (267)
T PHA03390         37 HKPTQKLFVQKIIKAKNFNA---------IEPMVHQLMKDNPNFIKLYYSVTTLK----GHVLIMDYIKDGDLFDLLKKE  103 (267)
T ss_pred             EcCCCcEEEEEEEehhhcch---------hhHHHHHHhhcCCCEEEEEEEEecCC----eeEEEEEcCCCCcHHHHHHhc
Confidence            35678899999987431110         112222212 7999999999997754    589999999999999999764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-cEEEeecCcccc----ccCCCccccccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHT----IENKKYLSATRQTY  155 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~----~~~~~t~~y~aPE~  155 (218)
                      .    .+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++ .++|+|||++..    ....++..|+|||+
T Consensus       104 ~----~l~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~  177 (267)
T PHA03390        104 G----KLSEAEVKKIIRQLVEALNDLHK--HNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEK  177 (267)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHh--CCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCCCCCcccChhh
Confidence            2    58999999999999999999999  7799999999999999988 999999998765    34568899999997


Q ss_pred             C--CCCch----------hhhhhhCCCCCCcchh
Q psy238          156 G--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      .  ..++.          ++++++|..||.....
T Consensus       178 ~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~  211 (267)
T PHA03390        178 IKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDED  211 (267)
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCc
Confidence            3  22222          6899999999985443

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.92  E-value=1.4e-23  Score=172.80  Aligned_cols=163  Identities=19%  Similarity=0.248  Sum_probs=132.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...... .......+..|+.+++.++|||++++++++....    ..++||||+. ++|.+++....
T Consensus        46 ~~~~~~~valK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-g~l~~~~~~~~  119 (317)
T cd06635          46 DVRTNEVVAIKKMSYSGKQ-SNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREH----TAWLVMEYCL-GSASDLLEVHK  119 (317)
T ss_pred             EcCCCcEEEEEEEecCCCC-chHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC----eEEEEEeCCC-CCHHHHHHHhc
Confidence            3457889999998754222 2344567889999999999999999999987654    4899999996 58888776543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccCC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYGR  157 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~~  157 (218)
                         .++++..+..++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..    ....+++.|+|||+..
T Consensus       120 ---~~l~~~~~~~i~~~i~~~l~~lH~--~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~  194 (317)
T cd06635         120 ---KPLQEVEIAAITHGALQGLAYLHS--HNMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVIL  194 (317)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCcccEEECCCCCEEEecCCCccccCCcccccCCccccChhhhh
Confidence               358999999999999999999999  7799999999999999999999999998765    3456788999999731


Q ss_pred             -----CCch----------hhhhhhCCCCCCcc
Q psy238          158 -----PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       158 -----~~~~----------~~ei~tg~~p~~~~  175 (218)
                           .++.          ++++++|..||...
T Consensus       195 ~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  227 (317)
T cd06635         195 AMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  227 (317)
T ss_pred             cCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence                 1221          68999999998654

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.92  E-value=1.2e-23  Score=167.07  Aligned_cols=161  Identities=20%  Similarity=0.256  Sum_probs=130.5

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      |..||+|.+...   ........+.+|+.+++.+.||||+.+++++....    ..++||+|+++++|.+++....   .
T Consensus        19 ~~~v~~K~~~~~---~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~~v~e~~~~~~l~~~l~~~~---~   88 (251)
T cd05041          19 NTEVAVKTCRST---LPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQ----PIYIVMELVPGGSLLTFLRKKK---N   88 (251)
T ss_pred             CCcEEEEecccc---CCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCC----CeEEEEEcCCCCcHHHHHHhcC---C
Confidence            889999988743   22345667889999999999999999999987654    5899999999999999997643   3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccccc----------CCCccccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIE----------NKKYLSATRQTY  155 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~----------~~~t~~y~aPE~  155 (218)
                      .++...+..++.|++.||.|||+  ++++|+||+|+|||++.++.++|+|||++....          ...+..|+|||.
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~lH~--~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~  166 (251)
T cd05041          89 RLTVKKLLQMSLDAAAGMEYLES--KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEA  166 (251)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHh
Confidence            48899999999999999999999  779999999999999999999999999876411          223566999996


Q ss_pred             C--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          156 G--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       156 ~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      .  ..++.          +++++| |..||......
T Consensus       167 ~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~  202 (251)
T cd05041         167 LNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQ  202 (251)
T ss_pred             hccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHH
Confidence            2  22222          688888 88888766543

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.92  E-value=7e-24  Score=176.51  Aligned_cols=166  Identities=15%  Similarity=0.157  Sum_probs=133.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||||++...  .........+.+|+.++..++||||+++++++.....  ....+++||+|+ +++|..++..
T Consensus        36 ~~~~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~  112 (343)
T cd07880          36 DRRTGAKVAIKKLYRP--FQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKH  112 (343)
T ss_pred             ECCCCcEEEEEEeccc--ccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHhc
Confidence            4678999999998632  2224455678899999999999999999998865432  123568999999 7899988864


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                           ..+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..     ....++..|+|||
T Consensus       113 -----~~l~~~~~~~i~~qi~~al~~LH~--~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE  185 (343)
T cd07880         113 -----EKLSEDRIQFLVYQMLKGLKYIHA--AGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAPE  185 (343)
T ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEcCCCCEEEeecccccccccCccccccCCcccCHH
Confidence                 348999999999999999999999  7799999999999999999999999998875     2345688999999


Q ss_pred             cCCC---Cch----------hhhhhhCCCCCCcchh
Q psy238          155 YGRP---ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~~~---~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +...   .+.          ++++++|..||.....
T Consensus       186 ~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~  221 (343)
T cd07880         186 VILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDH  221 (343)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            6321   222          6899999999976543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.92  E-value=7.4e-24  Score=170.95  Aligned_cols=163  Identities=24%  Similarity=0.357  Sum_probs=132.2

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||||++.....   ......+.+|+.+++.+.||||+++++++...+  ....++||||+++++|.+++....  
T Consensus        31 ~~~~~~avK~~~~~~~---~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~--~~~~~lv~e~~~~~~l~~~l~~~~--  103 (284)
T cd05038          31 NTGEQVAVKSLNHSGE---EQHRSDFEREIEILRTLDHENIVKYKGVCEKPG--GRSLRLIMEYLPSGSLRDYLQRHR--  103 (284)
T ss_pred             CCceEEEEEEeccccc---hHHHHHHHHHHHHHHhCCCCChheEEeeeecCC--CCceEEEEecCCCCCHHHHHHhCc--
Confidence            4678999999974321   145678899999999999999999999886633  346899999999999999997653  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccccc-----------CCCcccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIE-----------NKKYLSATR  152 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~-----------~~~t~~y~a  152 (218)
                       ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+....           ..++..|+|
T Consensus       104 -~~~~~~~~~~~~~~l~~aL~~lH~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (284)
T cd05038         104 -DQINLKRLLLFSSQICKGMDYLGS--QRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYA  180 (284)
T ss_pred             -cccCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccC
Confidence             248999999999999999999999  779999999999999999999999999887522           233456999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcch
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||..  ..++.          ++++++|..|+....
T Consensus       181 Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~  216 (284)
T cd05038         181 PECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPP  216 (284)
T ss_pred             cHHHccCCCCcccchHHHhhhhheeeccCCCccccc
Confidence            9962  22221          788999999986543

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.92  E-value=4.2e-24  Score=171.34  Aligned_cols=164  Identities=18%  Similarity=0.232  Sum_probs=129.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc--
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR--   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~--   82 (218)
                      ++..||||.+...   ........+.+|+.+++.++||||+++++++....    ..++||+|+++++|.+++.....  
T Consensus        25 ~~~~~~iK~~~~~---~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~l~~~~~~~   97 (269)
T cd05044          25 GPIRVAVKTLRKG---ATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNE----PQYIIMELMEGGDLLSYLRDARVER   97 (269)
T ss_pred             cceeehhhhhhcc---cchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCC----CeEEEEeccCCCcHHHHHHHhhhcc
Confidence            3467999987632   11234567888999999999999999999987644    58999999999999999976432  


Q ss_pred             -cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-----cEEEeecCcccc----------ccCCC
Q psy238           83 -NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-----LVKIGCDTYTHT----------IENKK  146 (218)
Q Consensus        83 -~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-----~~ki~dfg~~~~----------~~~~~  146 (218)
                       ....+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++     .++|+|||++..          ....+
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~l~~lH~--~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  175 (269)
T cd05044          98 FGPPLLTLKELLDICLDVAKGCVYLEQ--MHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLL  175 (269)
T ss_pred             cCCccccHHHHHHHHHHHHHHHHHHHh--CCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCC
Confidence             11347889999999999999999999  6799999999999999877     899999998753          12344


Q ss_pred             cccccccccCC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          147 YLSATRQTYGR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       147 t~~y~aPE~~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      +..|+|||+..  ..+.          +++|++ |..||.....
T Consensus       176 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~  219 (269)
T cd05044         176 PVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN  219 (269)
T ss_pred             CccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH
Confidence            67899999632  2111          789998 9999975543

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG1006|consensus

Probab=99.92  E-value=2.6e-25  Score=172.44  Aligned_cols=167  Identities=17%  Similarity=0.193  Sum_probs=133.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh-
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR-   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~-   79 (218)
                      +..+|...|||.+...+   ......+++.|..+..+- +.|+||++||.+...+    ..|+.||.|+ .||+.+... 
T Consensus        85 hk~sg~~mAVKrIr~~n---~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EG----dcWiCMELMd-~SlDklYk~v  156 (361)
T KOG1006|consen   85 HKPSGKLMAVKRIRSNN---IEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEG----DCWICMELMD-ISLDKLYKRV  156 (361)
T ss_pred             cCccCcEEEEEEeeecc---chHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCC----ceeeeHHHHh-hhHHHHHHHH
Confidence            57899999999998642   245667788888765554 7899999999876644    4899999995 688765432 


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                      +.-....+|+..+-.+....+.||.||-.- ..|||||+||+|||++..|.+||||||++..       ....|-..|||
T Consensus       157 y~vq~~~ipE~Ilg~ItvatV~AL~yLK~~-lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmA  235 (361)
T KOG1006|consen  157 YSVQKSRIPENILGHITVATVDALDYLKEE-LKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMA  235 (361)
T ss_pred             HHHHhccCcHhhhhheeeeehhHHHHHHHH-hhhhhccCChhheEEecCCCEeeecccchHhHHHHHHhhhccCCccccC
Confidence            111234599999999999999999999872 3499999999999999999999999999876       66788999999


Q ss_pred             cccCCCCch--------------hhhhhhCCCCCCcchh
Q psy238          153 QTYGRPISG--------------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~~~~~--------------~~ei~tg~~p~~~~~~  177 (218)
                      ||...+...              ++|+.||..||..+..
T Consensus       236 PERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s  274 (361)
T KOG1006|consen  236 PERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS  274 (361)
T ss_pred             hhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH
Confidence            997332221              7999999999988766

>KOG0196|consensus

Probab=99.92  E-value=8.9e-25  Score=189.63  Aligned_cols=163  Identities=19%  Similarity=0.267  Sum_probs=137.7

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||.++.   .........|+.|..||.++.||||++|.|+...+.+    +.+|+|||++|+|+.||+.+.+   .
T Consensus       658 ~~VAIKTLK~---GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~P----vMIiTEyMENGsLDsFLR~~DG---q  727 (996)
T KOG0196|consen  658 ITVAIKTLKA---GYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKP----VMIITEYMENGSLDSFLRQNDG---Q  727 (996)
T ss_pred             eeEEEeeecc---CccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCce----eEEEhhhhhCCcHHHHHhhcCC---c
Confidence            5799999985   4557788899999999999999999999999987654    8899999999999999999864   4


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSATRQTY  155 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~aPE~  155 (218)
                      |...+...+++.|+.|+.||.+  .++|||||..+|||++.+..+|++|||+++.           ....-...|.|||.
T Consensus       728 ftviQLVgMLrGIAsGMkYLsd--m~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEA  805 (996)
T KOG0196|consen  728 FTVIQLVGMLRGIASGMKYLSD--MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEA  805 (996)
T ss_pred             eEeehHHHHHHHHHHHhHHHhh--cCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhH
Confidence            8888999999999999999999  5599999999999999999999999999975           11222478999996


Q ss_pred             --CCCCchhhhhh-----------hCCCCCCcchhhhhH
Q psy238          156 --GRPISGQYEIV-----------TKTNNVTEKKKEKEE  181 (218)
Q Consensus       156 --~~~~~~~~ei~-----------tg~~p~~~~~~ee~~  181 (218)
                        ...++.+.|+|           -|.+||++.+.++.=
T Consensus       806 Ia~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVI  844 (996)
T KOG0196|consen  806 IAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVI  844 (996)
T ss_pred             hhhcccCchhhccccceEEEEecccCCCcccccchHHHH
Confidence              34555554443           389999998887653

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.92  E-value=6e-24  Score=169.65  Aligned_cols=162  Identities=20%  Similarity=0.262  Sum_probs=136.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++.....   ......+.+|+.++..++||||+++++++....    .+++||+|+++++|.+++... 
T Consensus        22 ~~~~~~~~~vk~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   93 (264)
T cd06623          22 HKPTGKIYALKKIHVDGD---EEFRKQLLRELKTLRSCESPYVVKCYGAFYKEG----EISIVLEYMDGGSLADLLKKV-   93 (264)
T ss_pred             EcCCCcEEEEEEeccCcc---hHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCC----eEEEEEEecCCCcHHHHHHHc-
Confidence            345789999999875321   255678899999999999999999999987653    689999999999999999865 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------cCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------ENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------~~~~t~~y~a  152 (218)
                         ..+++..++.++.|++.||.|||+ .+  ++|+||+|+||+++.++.++|+|||.+...        ...++..|+|
T Consensus        94 ---~~l~~~~~~~~~~~l~~~l~~lh~~~~--~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~  168 (264)
T cd06623          94 ---GKIPEPVLAYIARQILKGLDYLHTKRH--IIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMS  168 (264)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHhccCC--CccCCCCHHHEEECCCCCEEEccCccceecccCCCcccceeecccccC
Confidence               348999999999999999999999 76  999999999999999999999999988751        3456788999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||+..  ..+.          ++++++|..||....
T Consensus       169 pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~  204 (264)
T cd06623         169 PERIQGESYSYAADIWSLGLTLLECALGKFPFLPPG  204 (264)
T ss_pred             HhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            99732  1111          689999999997765

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.92  E-value=1.6e-23  Score=167.34  Aligned_cols=159  Identities=13%  Similarity=0.202  Sum_probs=124.4

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|.+..   .........+.+|+.+++.++||||+++++++...+   +..++||+|+.+++|.+++....   
T Consensus        22 ~~~~~aiK~~~~---~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~---~~~~lv~e~~~~~~L~~~~~~~~---   92 (262)
T cd05058          22 QKIHCAVKSLNR---ITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSE---GSPLVVLPYMKHGDLRNFIRSET---   92 (262)
T ss_pred             ceEEEEEEecCc---cCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCC---CCcEEEEecCCCCCHHHHHHhcC---
Confidence            346799998753   122345567888999999999999999999775432   24789999999999999997643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc------------cCCCcccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI------------ENKKYLSATR  152 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~------------~~~~t~~y~a  152 (218)
                      ..+++..+..++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++...            ...++..|+|
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~a  170 (262)
T cd05058          93 HNPTVKDLIGFGLQVAKGMEYLAS--KKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMA  170 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccC
Confidence            236777888999999999999999  77999999999999999999999999988631            2334678999


Q ss_pred             cccC--CCCch----------hhhhhhC-CCCCCc
Q psy238          153 QTYG--RPISG----------QYEIVTK-TNNVTE  174 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg-~~p~~~  174 (218)
                      ||+.  ..++.          ++++++| ..||..
T Consensus       171 PE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~  205 (262)
T cd05058         171 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD  205 (262)
T ss_pred             hhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCC
Confidence            9963  23222          6888885 555654

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.92  E-value=1.1e-23  Score=170.58  Aligned_cols=161  Identities=19%  Similarity=0.291  Sum_probs=133.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|++....    . ....+..|+.++..++||||+++++++....    ..|+|++|+++++|.+++.... 
T Consensus        41 ~~~~~~~~iK~~~~~~----~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~-  110 (286)
T cd06614          41 RATGKEVAIKKMRLRK----Q-NKELIINEILIMKDCKHPNIVDYYDSYLVGD----ELWVVMEYMDGGSLTDIITQNF-  110 (286)
T ss_pred             ccCCcEEEEEEEecCc----h-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECC----EEEEEEeccCCCcHHHHHHHhc-
Confidence            3468899999997431    1 4567888999999999999999999987753    5899999999999999998764 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                        ..++...++.++.|++.||.|||+  .|++|+||+|+||+++.++.++|+|||++..        ....++..|+|||
T Consensus       111 --~~l~~~~~~~i~~~i~~~L~~lH~--~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE  186 (286)
T cd06614         111 --VRMNEPQIAYVCREVLQGLEYLHS--QNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPE  186 (286)
T ss_pred             --cCCCHHHHHHHHHHHHHHHHHHHh--CCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHh
Confidence              258999999999999999999999  7799999999999999999999999998764        2334678899999


Q ss_pred             cC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          155 YG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +.  ..++.          ++++++|..||.....
T Consensus       187 ~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~  221 (286)
T cd06614         187 VIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP  221 (286)
T ss_pred             HhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCH
Confidence            72  22222          7999999999975443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.92  E-value=9.3e-24  Score=168.21  Aligned_cols=155  Identities=23%  Similarity=0.299  Sum_probs=125.7

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..|++|++...     ......+.+|+.+++.+.||||+++++++.. .    ..++||||+++++|.+++.....   .
T Consensus        31 ~~v~~k~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~----~~~lv~e~~~~~~L~~~l~~~~~---~   97 (259)
T cd05037          31 VSVVLKVLGSD-----HRDSLAFFETASLMSQLSHKHLVKLYGVCVR-D----ENIMVEEYVKFGPLDVFLHREKN---N   97 (259)
T ss_pred             eeeeeeccccc-----hhhHHHHHHHHHHHHcCCCcchhheeeEEec-C----CcEEEEEcCCCCcHHHHHHhhcc---C
Confidence            35778877632     1125778899999999999999999998876 3    36999999999999999987542   5


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-------cEEEeecCcccc----ccCCCccccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-------LVKIGCDTYTHT----IENKKYLSATRQTY  155 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-------~~ki~dfg~~~~----~~~~~t~~y~aPE~  155 (218)
                      ++...+..++.||+.||.|||+  .+|+|+||+|+|||++.++       .++|+|||++..    ....++..|+|||+
T Consensus        98 ~~~~~~~~~~~~i~~~l~~LH~--~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~y~aPE~  175 (259)
T cd05037          98 VSLHWKLDVAKQLASALHYLED--KKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIPWIAPEC  175 (259)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhh--CCeecccCccceEEEecCccccCCceeEEeCCCCcccccccccccccCCCccChhh
Confidence            8999999999999999999999  7799999999999999887       899999998876    24456788999997


Q ss_pred             CC----CCch----------hhhhhh-CCCCCCcch
Q psy238          156 GR----PISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       156 ~~----~~~~----------~~ei~t-g~~p~~~~~  176 (218)
                      ..    ..+.          ++++++ |..||....
T Consensus       176 ~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~  211 (259)
T cd05037         176 IRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLS  211 (259)
T ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCC
Confidence            32    2222          678888 577776654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.92  E-value=1.1e-23  Score=170.01  Aligned_cols=164  Identities=21%  Similarity=0.219  Sum_probs=131.5

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN-   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-   83 (218)
                      ++..||+|.+..   .........+.+|+.++..+.||||+++++++....   ...+++++|+++++|.+++...... 
T Consensus        34 ~~~~v~~k~~~~---~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~---~~~~~~~~~~~~~~L~~~l~~~~~~~  107 (280)
T cd05043          34 KEEEVFVKTVKD---HASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG---EPPFVLYPYMNWGNLKLFLQQCRLGE  107 (280)
T ss_pred             ceeEEEEEEccC---CCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC---CCCEEEEEcCCCCcHHHHHHhccccc
Confidence            367899998863   222445677889999999999999999999876542   2478999999999999999765322 


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccc
Q psy238           84 ---VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSA  150 (218)
Q Consensus        84 ---~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y  150 (218)
                         +..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||+++..          ...++..|
T Consensus       108 ~~~~~~l~~~~~~~i~~~i~~~l~~LH~--~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y  185 (280)
T cd05043         108 ANNPQALSTQQLVHMAIQIACGMSYLHK--RGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKW  185 (280)
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHH--CCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhc
Confidence               1458999999999999999999999  77999999999999999999999999998641          23456789


Q ss_pred             cccccCC--CCch----------hhhhhh-CCCCCCcch
Q psy238          151 TRQTYGR--PISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       151 ~aPE~~~--~~~~----------~~ei~t-g~~p~~~~~  176 (218)
                      +|||+..  .++.          ++++++ |..||....
T Consensus       186 ~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  224 (280)
T cd05043         186 MALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEID  224 (280)
T ss_pred             cCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC
Confidence            9999732  2222          688888 999997653

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.5e-23  Score=166.23  Aligned_cols=163  Identities=23%  Similarity=0.295  Sum_probs=135.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+.....  .......+.+|+.++..++|||++++++++.+.    ..+++||+|+++++|.+++... 
T Consensus        21 ~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~----~~~~~v~e~~~~~~L~~~~~~~-   93 (254)
T cd06627          21 NLETGDFVAIKQISLEKI--KEEALKSIMQEIDLLKNLKHPNIVKYIGSIETS----DSLYIILEYAENGSLRQIIKKF-   93 (254)
T ss_pred             EcCCCcEEEEEEeccccc--CHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeC----CEEEEEEecCCCCcHHHHHHhc-
Confidence            345788999999985422  134567889999999999999999999998764    3689999999999999999865 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .||+|+||+|+||+++.++.++|+|||++..        ....++..|+||
T Consensus        94 ---~~l~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~p  168 (254)
T cd06627          94 ---GPFPESLVAVYVYQVLQGLAYLHE--QGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAP  168 (254)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHhh--CCcccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCH
Confidence               348999999999999999999999  7799999999999999999999999998875        234678899999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  ..+.          ++++++|..||....
T Consensus       169 e~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~  203 (254)
T cd06627         169 EVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN  203 (254)
T ss_pred             hhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc
Confidence            9732  1111          689999999997544

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.92  E-value=1.5e-23  Score=166.31  Aligned_cols=167  Identities=26%  Similarity=0.400  Sum_probs=137.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+.....  .......+..|++++..++|||++++++.+...    ...++|++++++++|.+++....
T Consensus        21 ~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~   94 (258)
T cd08215          21 RKSDGKLYVLKEIDLSNM--SEKEREDALNEVKILKKLNHPNIIKYYESFEEK----GKLCIVMEYADGGDLSQKIKKQK   94 (258)
T ss_pred             EcCCCcEEEEEEeecccC--ChHHHHHHHHHHHHHHhcCCCChhheEEEEecC----CEEEEEEEecCCCcHHHHHHHhh
Confidence            345789999999975321  235566788999999999999999999988764    36899999999999999998764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .....+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..        ....+++.|+||
T Consensus        95 ~~~~~~~~~~~~~i~~~i~~~l~~lh~--~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~p  172 (258)
T cd08215          95 KEGKPFPEEQILDWFVQLCLALKYLHS--RKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSP  172 (258)
T ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHh--CCEecccCChHHeEEcCCCcEEECCccceeecccCcceecceeeeecccCh
Confidence            333569999999999999999999999  7799999999999999999999999998765        234568889999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |...  .++.          ++++++|..||....
T Consensus       173 e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~  207 (258)
T cd08215         173 ELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN  207 (258)
T ss_pred             hHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc
Confidence            9622  2222          688999999997654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.92  E-value=1.4e-23  Score=169.33  Aligned_cols=165  Identities=15%  Similarity=0.183  Sum_probs=129.4

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN-   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-   83 (218)
                      ++..||+|.+...   ........+.+|+.+++.++||||+++++++.+..    ..++||||+++++|.+++...... 
T Consensus        35 ~~~~v~ik~~~~~---~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~lv~e~~~g~~L~~~i~~~~~~~  107 (277)
T cd05036          35 VELQVAVKTLPES---CSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERL----PRFILLELMAGGDLKSFLRENRPRP  107 (277)
T ss_pred             CceeEEEEEcCCC---CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC----CcEEEEecCCCCCHHHHHHHhCCCC
Confidence            5678999987632   22344567888999999999999999999887654    479999999999999999765321 


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC---cEEEeecCccccc----------cCCCcc
Q psy238           84 --VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG---LVKIGCDTYTHTI----------ENKKYL  148 (218)
Q Consensus        84 --~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~---~~ki~dfg~~~~~----------~~~~t~  148 (218)
                        ...+++..+..++.||+.||.|||+  .+++|+||+|+|||++.++   .++|+|||++...          ....+.
T Consensus       108 ~~~~~~~~~~~~~~~~qi~~~l~~LH~--~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~  185 (277)
T cd05036         108 ERPSSLTMKDLLFCARDVAKGCKYLEE--NHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPI  185 (277)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHH--CCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccH
Confidence              1248899999999999999999999  7799999999999998754   6999999988642          122246


Q ss_pred             cccccccC--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          149 SATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       149 ~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      .|+|||+.  ..++.          ++++++ |..||.+...+
T Consensus       186 ~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~  228 (277)
T cd05036         186 KWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQ  228 (277)
T ss_pred             hhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            79999973  33333          678786 99999865543

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.92  E-value=1e-23  Score=169.67  Aligned_cols=164  Identities=18%  Similarity=0.219  Sum_probs=130.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +...||+|.+...   ........+.+|+.+++.++||||+++++++.+..    ..|+||||+++++|.+++.......
T Consensus        34 ~~~~~~~k~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~i~~~~~~~  106 (275)
T cd05046          34 GETLVLVKALQKT---KDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE----PHYMILEYTDLGDLKQFLRATKSKD  106 (275)
T ss_pred             CcceEEEEccCCc---cchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC----cceEEEEecCCCcHHHHHHhccccc
Confidence            3467999988632   22335667889999999999999999999986644    4799999999999999998654211


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccc
Q psy238           85 -----KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSA  150 (218)
Q Consensus        85 -----~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y  150 (218)
                           ..+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++++|||++..         ....++..|
T Consensus       107 ~~~~~~~l~~~~~~~~~~~l~~~l~~LH~--~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y  184 (275)
T cd05046         107 EKLKPPPLSTKQKVALCTQIALGMDHLSN--ARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRW  184 (275)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHhhh--cCcccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEee
Confidence                 258999999999999999999999  6799999999999999999999999998753         233456779


Q ss_pred             cccccC--CCCch----------hhhhhh-CCCCCCcchh
Q psy238          151 TRQTYG--RPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      +|||..  ...+.          ++++++ |..||.....
T Consensus       185 ~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~  224 (275)
T cd05046         185 LAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSD  224 (275)
T ss_pred             cChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccch
Confidence            999962  22222          678887 7888865443

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.91  E-value=7.4e-24  Score=168.58  Aligned_cols=165  Identities=20%  Similarity=0.337  Sum_probs=133.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+.....  .......+.+|+.+++.++||||+++++.+....    .+++|+||+++++|.+++....
T Consensus        21 ~~~~~~~~~ik~~~~~~~--~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~   94 (257)
T cd08225          21 AKSDSEHCVIKEIDLTKM--PVKEKEASKKEVILLAKMKHPNIVTFFASFQENG----RLFIVMEYCDGGDLMKRINRQR   94 (257)
T ss_pred             EcCCCceEEEEEeeHhhc--cchhhHHHHHHHHHHHhCCCCChhhhhheeccCC----eEEEEEecCCCCcHHHHHHhcc
Confidence            456788999999875321  1234457788999999999999999999886643    6899999999999999997653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-cEEEeecCcccc--------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .  ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++ .++|+|||.+..        ....+++.|+|
T Consensus        95 ~--~~~~~~~~~~~~~~l~~~l~~lh~--~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~a  170 (257)
T cd08225          95 G--VLFSEDQILSWFVQISLGLKHIHD--RKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLS  170 (257)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHH--CCcccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccC
Confidence            2  357899999999999999999999  6799999999999998875 569999998764        22357888999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||+..  .++.          ++++++|..||....
T Consensus       171 pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  206 (257)
T cd08225         171 PEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN  206 (257)
T ss_pred             HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc
Confidence            99732  2222          688999999997554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.91  E-value=4.4e-24  Score=170.61  Aligned_cols=156  Identities=19%  Similarity=0.218  Sum_probs=124.6

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      ...||+|.+..    ......+.+..|+.+++.+.||||+++++++....    ..++||||+++++|..++....   .
T Consensus        27 ~~~~~~k~~~~----~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~---~   95 (258)
T cd05078          27 KTEVLLKVLDK----SHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGD----ESIMVQEYVKFGSLDTYLKKNK---N   95 (258)
T ss_pred             cchhhHHhhcc----hhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCC----CcEEEEecCCCCcHHHHHhcCC---C
Confidence            34588887752    22445567888999999999999999999987643    4799999999999999997643   3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc--------EEEeecCcccc----ccCCCccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL--------VKIGCDTYTHT----IENKKYLSATRQ  153 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~--------~ki~dfg~~~~----~~~~~t~~y~aP  153 (218)
                      .+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.        ++++|||++..    ....++..|+||
T Consensus        96 ~~~~~~~~~~~~qi~~~l~~lH~--~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aP  173 (258)
T cd05078          96 LINISWKLEVAKQLAWALHFLED--KGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIPWVPP  173 (258)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCccceEEEecccccccCCCceEEecccccccccCCchhccccCCccCc
Confidence            48899999999999999999999  77999999999999987754        69999998765    345678899999


Q ss_pred             ccCCC---Cch----------hhhhhhCC-CCCCc
Q psy238          154 TYGRP---ISG----------QYEIVTKT-NNVTE  174 (218)
Q Consensus       154 E~~~~---~~~----------~~ei~tg~-~p~~~  174 (218)
                      |+...   .+.          +|++++|. .|+..
T Consensus       174 E~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~  208 (258)
T cd05078         174 ECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSA  208 (258)
T ss_pred             hhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhh
Confidence            97321   221          68899985 55544

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=4.4e-24  Score=178.72  Aligned_cols=151  Identities=19%  Similarity=0.221  Sum_probs=122.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||+|+....          ....|+.+++.++||||+++++++....    ..++||+++. ++|.+++.... 
T Consensus        88 ~~~~~~valK~~~~~----------~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~l~~~~-  151 (357)
T PHA03209         88 PGQPDPVVLKIGQKG----------TTLIEAMLLQNVNHPSVIRMKDTLVSGA----ITCMVLPHYS-SDLYTYLTKRS-  151 (357)
T ss_pred             CCCCceEEEEeCCcc----------ccHHHHHHHHhCCCCCCcChhheEEeCC----eeEEEEEccC-CcHHHHHHhcc-
Confidence            456778999975421          2346889999999999999999987644    5899999995 69998887643 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQTY  155 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE~  155 (218)
                        ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....||..|+|||+
T Consensus       152 --~~~~~~~~~~i~~qi~~aL~~LH~--~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~  227 (357)
T PHA03209        152 --RPLPIDQALIIEKQILEGLRYLHA--QRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEV  227 (357)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEECCCCCEEEecCccccccccCcccccccccccccCCee
Confidence              458999999999999999999999  7799999999999999999999999998864       34568999999997


Q ss_pred             CC--CCch----------hhhhhhCCCCCC
Q psy238          156 GR--PISG----------QYEIVTKTNNVT  173 (218)
Q Consensus       156 ~~--~~~~----------~~ei~tg~~p~~  173 (218)
                      ..  .++.          +|+++++..|+.
T Consensus       228 ~~~~~~~~~~DiwSlGvvl~ell~~~~~~f  257 (357)
T PHA03209        228 LARDKYNSKADIWSAGIVLFEMLAYPSTIF  257 (357)
T ss_pred             cCCCCCCchhhHHHHHHHHHHHHHcCCccc
Confidence            32  2222          688888766653

>KOG1094|consensus

Probab=99.91  E-value=6.9e-25  Score=185.29  Aligned_cols=167  Identities=20%  Similarity=0.256  Sum_probs=133.8

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .+..||||.++.   .........|..||.+|.++.||||+.|+++|...++    +|+|+||+++|+|.+|+..+..  
T Consensus       561 g~lkVAVK~Lr~---~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DeP----icmI~EYmEnGDLnqFl~ahea--  631 (807)
T KOG1094|consen  561 GPLKVAVKILRP---DATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDP----LCMITEYMENGDLNQFLSAHEL--  631 (807)
T ss_pred             CceEEEEeecCc---ccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCc----hHHHHHHHhcCcHHHHHHhccC--
Confidence            357899999984   2334456889999999999999999999999988764    8999999999999999998742  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQT  154 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE  154 (218)
                      ..+......+++.||++|+.||.+++  +|||||.|.|+|++.++++||+|||+++.          ....-...|||+|
T Consensus       632 pt~~t~~~vsi~tqiasgmaYLes~n--fVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawE  709 (807)
T KOG1094|consen  632 PTAETAPGVSICTQIASGMAYLESLN--FVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWE  709 (807)
T ss_pred             cccccchhHHHHHHHHHHHHHHHhhc--hhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHH
Confidence            11344556779999999999999966  99999999999999999999999999984          2233468999999


Q ss_pred             c--CCCCch----------hhhh--hhCCCCCCcchhhhhHH
Q psy238          155 Y--GRPISG----------QYEI--VTKTNNVTEKKKEKEEE  182 (218)
Q Consensus       155 ~--~~~~~~----------~~ei--~tg~~p~~~~~~ee~~~  182 (218)
                      .  ...++.          ++|+  ++-..||....++..=+
T Consensus       710 sillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vve  751 (807)
T KOG1094|consen  710 SILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVE  751 (807)
T ss_pred             HHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHH
Confidence            4  334444          4554  56678887776665433

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.91  E-value=1.7e-23  Score=167.37  Aligned_cols=159  Identities=23%  Similarity=0.270  Sum_probs=127.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .+..||+|.+...     ......+.+|+.+++.++|+||+++++++.. .    ..+++|+|+++++|.+++.....  
T Consensus        29 ~~~~~~iK~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~----~~~~v~e~~~~~~L~~~~~~~~~--   96 (260)
T cd05073          29 KHTKVAVKTMKPG-----SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-E----PIYIITEFMAKGSLLDFLKSDEG--   96 (260)
T ss_pred             CCccEEEEecCCC-----hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-C----CeEEEEEeCCCCcHHHHHHhCCc--
Confidence            4556999988632     2234678889999999999999999998865 2    47999999999999999976532  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~  155 (218)
                      ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+...         ...++..|+|||+
T Consensus        97 ~~~~~~~~~~~~~~l~~aL~~lH~--~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~  174 (260)
T cd05073          97 SKQPLPKLIDFSAQIAEGMAFIEQ--RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEA  174 (260)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHh--CCccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhH
Confidence            457888999999999999999999  77999999999999999999999999987541         2234567999997


Q ss_pred             CC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          156 GR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       156 ~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      ..  .++.          ++++++ |..||.+...
T Consensus       175 ~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~  209 (260)
T cd05073         175 INFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN  209 (260)
T ss_pred             hccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH
Confidence            32  2221          688998 8999976543

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.91  E-value=2.1e-23  Score=171.43  Aligned_cols=164  Identities=20%  Similarity=0.258  Sum_probs=133.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...... .......+..|+.+++.++|||++++++++.+..    ..|+||||+. ++|.+++....
T Consensus        42 ~~~~~~~v~ik~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~l~~~~  115 (313)
T cd06633          42 NSHTNEVVAVKKMSYSGKQ-TNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEH----TAWLVMEYCL-GSASDLLEVHK  115 (313)
T ss_pred             ECCCCcEEEEEEEeccccC-chHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCC----EEEEEEecCC-CCHHHHHHhcC
Confidence            3567899999998754322 2344567888999999999999999999987754    5899999995 68888876543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccC-
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYG-  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~-  156 (218)
                         .++++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++..    ....++..|+|||+. 
T Consensus       116 ---~~l~~~~~~~~~~qi~~al~~LH~--~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~  190 (313)
T cd06633         116 ---KPLQEVEIAAITHGALQGLAYLHS--HNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVIL  190 (313)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCChhhEEECCCCCEEEeecCCCcccCCCCCccccccccChhhcc
Confidence               358999999999999999999999  7799999999999999999999999998765    345678899999973 


Q ss_pred             ----CCCch----------hhhhhhCCCCCCcch
Q psy238          157 ----RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       157 ----~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                          ..++.          ++++++|..||....
T Consensus       191 ~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~  224 (313)
T cd06633         191 AMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  224 (313)
T ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                22221          689999999997653

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG3653|consensus

Probab=99.91  E-value=2.5e-24  Score=177.90  Aligned_cols=141  Identities=17%  Similarity=0.200  Sum_probs=120.3

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhc--CCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQ--LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~--l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      -+++.||||++.       ....+.+++|-.|.+.  +.|+||+++++.-.........+++|++|.+.|||.+||..+.
T Consensus       231 L~~~~VAVKifp-------~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~nt  303 (534)
T KOG3653|consen  231 LDNRLVAVKIFP-------EQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLKANT  303 (534)
T ss_pred             ccCceeEEEecC-------HHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHHhcc
Confidence            356899999998       4566777877777655  4899999999886655444556899999999999999999864


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhc-CC------CCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHS-CS------PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IEN  144 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~------~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~  144 (218)
                           +++....+++..++.||+|||+ ..      .+|+|||||+.||||-.|+.+.|+|||++-.          ...
T Consensus       304 -----isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~q  378 (534)
T KOG3653|consen  304 -----ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQ  378 (534)
T ss_pred             -----ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhh
Confidence                 8999999999999999999996 21      4699999999999999999999999999865          457


Q ss_pred             CCcccccccccC
Q psy238          145 KKYLSATRQTYG  156 (218)
Q Consensus       145 ~~t~~y~aPE~~  156 (218)
                      +||..|||||+.
T Consensus       379 VGT~RYMAPEvL  390 (534)
T KOG3653|consen  379 VGTRRYMAPEVL  390 (534)
T ss_pred             hhhhhhcCHHHH
Confidence            899999999983

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.91  E-value=1.2e-23  Score=166.73  Aligned_cols=164  Identities=18%  Similarity=0.225  Sum_probs=134.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|++..... ........+..|+.+++.++||||+++++.+....    .+|+||+|+++++|.+++.... 
T Consensus        15 ~~~~~~~~~k~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~l~~~~-   88 (250)
T cd05123          15 KDTGKLYAMKVLKKKKI-IKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEE----KLYLVLEYAPGGELFSHLSKEG-   88 (250)
T ss_pred             CCCCcEEEEEEeehhhh-cchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCC----eeEEEEecCCCCcHHHHHHhcC-
Confidence            45789999999875422 22335567889999999999999999998886543    6899999999999999997653 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                         .+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..        ....++..|+|||
T Consensus        89 ---~l~~~~~~~~~~qi~~~l~~lh~--~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe  163 (250)
T cd05123          89 ---RFSEERARFYAAEIVLALEYLHS--LGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPE  163 (250)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHH--CCceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChH
Confidence               48999999999999999999999  6799999999999999999999999998865        2345788999999


Q ss_pred             cCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          155 YGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ...  ..+.          ++++++|..||.....
T Consensus       164 ~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~  198 (250)
T cd05123         164 VLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR  198 (250)
T ss_pred             HhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH
Confidence            732  1111          6999999999976543

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0983|consensus

Probab=99.91  E-value=1.1e-24  Score=169.64  Aligned_cols=162  Identities=19%  Similarity=0.225  Sum_probs=132.8

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|..+|||.+...   +......+++..+.++...+ .|.||+.+|+|....    .+++.||.|. ..+..++....
T Consensus       114 rs~~~iiAVK~M~rt---~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~----dV~IcMelMs-~C~ekLlkrik  185 (391)
T KOG0983|consen  114 RSTGHIIAVKQMRRT---GNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNT----DVFICMELMS-TCAEKLLKRIK  185 (391)
T ss_pred             cccceEEEEEeeccc---CCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCc----hHHHHHHHHH-HHHHHHHHHhc
Confidence            457899999998753   33456677888888877765 899999999998754    3889999984 56777776643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                         .++|+..+-.+...++.||.||-+. ++|+|||+||+|||+|+.|++|+||||++..       ....|-+.|||||
T Consensus       186 ---~piPE~ilGk~tva~v~AL~YLKeK-H~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAhtrsAGC~~YMaPE  261 (391)
T KOG0983|consen  186 ---GPIPERILGKMTVAIVKALYYLKEK-HGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHTRSAGCAAYMAPE  261 (391)
T ss_pred             ---CCchHHhhhhhHHHHHHHHHHHHHh-cceeecccCccceEEccCCCEEeecccccceeecccccccccCCccccCcc
Confidence               5699999999999999999999874 5799999999999999999999999999876       4567889999999


Q ss_pred             cCCCCch---------------hhhhhhCCCCCCcch
Q psy238          155 YGRPISG---------------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~~~~~~~---------------~~ei~tg~~p~~~~~  176 (218)
                      ...+.+.               ++|+.||..||.+..
T Consensus       262 Ridp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~  298 (391)
T KOG0983|consen  262 RIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK  298 (391)
T ss_pred             ccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC
Confidence            7554322               799999999998754

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.91  E-value=8.7e-24  Score=171.41  Aligned_cols=162  Identities=16%  Similarity=0.195  Sum_probs=131.1

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|..||||++..............+.+|+.++..+ +||+|+.+++++....    .+|+||||+++++|.+++... 
T Consensus        25 ~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~-   99 (288)
T cd05583          25 HDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDT----KLHLILDYVNGGELFTHLYQR-   99 (288)
T ss_pred             ccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCC----EEEEEEecCCCCcHHHHHhhc-
Confidence            3567889999987432222233456778899999999 6999999998886543    589999999999999998754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         ..+++..+..++.|++.||.|||+  .+++|+||+|.||+++.++.++|+|||++..         ....++..|+|
T Consensus       100 ---~~~~~~~~~~~~~ql~~~l~~lH~--~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a  174 (288)
T cd05583         100 ---EHFTESEVRVYIAEIVLALDHLHQ--LGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMA  174 (288)
T ss_pred             ---CCcCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHHHeEECCCCCEEEEECccccccccccccccccccCCccccC
Confidence               348899999999999999999999  7799999999999999999999999998764         12357889999


Q ss_pred             cccCCC----Cch----------hhhhhhCCCCCCc
Q psy238          153 QTYGRP----ISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       153 PE~~~~----~~~----------~~ei~tg~~p~~~  174 (218)
                      ||....    .+.          ++++++|..||..
T Consensus       175 PE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  210 (288)
T cd05583         175 PEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTV  210 (288)
T ss_pred             HHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCccc
Confidence            996221    111          6899999999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.91  E-value=1.3e-23  Score=175.07  Aligned_cols=166  Identities=18%  Similarity=0.185  Sum_probs=131.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||+|.+...  .........+.+|+.++..++||||+++++++.....  ....+|++++++ +++|.+++..
T Consensus        38 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~  114 (345)
T cd07877          38 DTKTGLRVAVKKLSRP--FQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC  114 (345)
T ss_pred             EcCCCeEEEEEEecCc--chhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEehhc-ccCHHHHHhc
Confidence            4578999999988742  1122345567889999999999999999998864321  123478888887 7899888764


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                      .     .+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..     ....++..|+|||
T Consensus       115 ~-----~l~~~~~~~i~~qi~~aL~~LH~--~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE  187 (345)
T cd07877         115 Q-----KLTDDHVQFLIYQILRGLKYIHS--ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPE  187 (345)
T ss_pred             C-----CCCHHHHHHHHHHHHHHHHHHHH--CCeeecCCChHHEEEcCCCCEEEecccccccccccccccccCCCccCHH
Confidence            2     38999999999999999999999  7799999999999999999999999998875     2346788999999


Q ss_pred             cCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          155 YGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +..   ..+.          ++++++|..||.....
T Consensus       188 ~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~  223 (345)
T cd07877         188 IMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH  223 (345)
T ss_pred             HHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            621   2222          6899999999975443

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.91  E-value=6.1e-24  Score=176.37  Aligned_cols=166  Identities=17%  Similarity=0.213  Sum_probs=132.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||.+....  ........+.+|+.+++.++||||+++++++.... .....+|+|++|+. ++|.+++...
T Consensus        26 ~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~  102 (337)
T cd07858          26 NSETNEKVAIKKIANAF--DNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TDLHQIIRSS  102 (337)
T ss_pred             ecCCCCeEEEEEecccc--cccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEeCCC-CCHHHHHhcC
Confidence            46789999999987431  12233456778999999999999999999876542 12245899999995 7999888754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------cCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------ENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------~~~~t~~y~a  152 (218)
                          ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...        ...++..|+|
T Consensus       103 ----~~l~~~~~~~i~~qi~~aL~~LH~--~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~a  176 (337)
T cd07858         103 ----QTLSDDHCQYFLYQLLRGLKYIHS--ANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRA  176 (337)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHh--CCEecCCCCHHHEEEcCCCCEEECcCccccccCCCcccccccccccCccC
Confidence                359999999999999999999999  77999999999999999999999999988752        2356888999


Q ss_pred             cccCC---CCch----------hhhhhhCCCCCCcch
Q psy238          153 QTYGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||+..   .++.          ++++++|..||.+..
T Consensus       177 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  213 (337)
T cd07858         177 PELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKD  213 (337)
T ss_pred             hHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCC
Confidence            99622   2222          689999999997653

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.91  E-value=3.4e-23  Score=166.37  Aligned_cols=170  Identities=19%  Similarity=0.220  Sum_probs=130.1

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCC--CeEEEEEeccCCCCHHHHHHhhc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDK--PRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      .+|..||||++...  .......+.+.+|+.+++.++||||+++++++......+  ...+++++|+.+++|..++....
T Consensus        25 ~~~~~~aiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  102 (273)
T cd05074          25 GSFQKVAVKMLKAD--IFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSR  102 (273)
T ss_pred             CCceEEEEEEeccc--cCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhc
Confidence            46789999998743  222345667889999999999999999999886643221  23478899999999998876432


Q ss_pred             c--cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCccc
Q psy238           82 R--NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLS  149 (218)
Q Consensus        82 ~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~  149 (218)
                      .  ....++...++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++...          ...+++.
T Consensus       103 ~~~~~~~l~~~~~~~~~~~i~~~l~~lH~--~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~  180 (273)
T cd05074         103 IGEEPFTLPLQTLVRFMIDIASGMEYLSS--KNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVK  180 (273)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHHh--CCEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchh
Confidence            1  12347889999999999999999999  77999999999999999999999999987641          2233467


Q ss_pred             ccccccCC--CCch----------hhhhhh-CCCCCCcchh
Q psy238          150 ATRQTYGR--PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       150 y~aPE~~~--~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                      |++||...  ..+.          ++++++ |..||.+...
T Consensus       181 ~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~  221 (273)
T cd05074         181 WLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN  221 (273)
T ss_pred             hcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH
Confidence            89999622  2222          688888 8888875543

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.91  E-value=1.2e-23  Score=174.12  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=131.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||.+....  ........+..|+.++..+.||||++++++|....   ..+|+||+|+ +++|..++..  
T Consensus        31 ~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~---~~~~lv~e~~-~~~L~~~~~~--  102 (328)
T cd07856          31 DQLTGQNVAIKKIMKPF--STPVLAKRTYRELKLLKHLRHENIISLSDIFISPL---EDIYFVTELL-GTDLHRLLTS--  102 (328)
T ss_pred             ECCCCCEEEEEEecccc--cccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCC---CcEEEEeehh-ccCHHHHHhc--
Confidence            45689999999886431  22334567788999999999999999999886533   2589999998 5799888864  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTYG  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~~  156 (218)
                         .+++...+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||.+..     ....++..|+|||+.
T Consensus       103 ---~~~~~~~~~~~~~ql~~aL~~LH~--~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~  177 (328)
T cd07856         103 ---RPLEKQFIQYFLYQILRGLKYVHS--AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIM  177 (328)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHEeECCCCCEEeCccccccccCCCcCCCcccccccCceee
Confidence               247888999999999999999999  7799999999999999999999999998865     234567889999963


Q ss_pred             ---CCCch----------hhhhhhCCCCCCcch
Q psy238          157 ---RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       157 ---~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                         ..++.          ++++++|..||....
T Consensus       178 ~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~  210 (328)
T cd07856         178 LTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKD  210 (328)
T ss_pred             eccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence               22222          688999999997654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.91  E-value=1.6e-23  Score=173.73  Aligned_cols=165  Identities=18%  Similarity=0.176  Sum_probs=130.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||+|.+...  .........+.+|+.++..+ +||||+++++++....  ...+|+||||++ ++|..++...
T Consensus        28 ~~~~~~~~~vK~~~~~--~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~--~~~~~lv~e~~~-~~L~~~~~~~  102 (337)
T cd07852          28 DRRTKEVVALKKIFDA--FRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAEN--DKDIYLVFEYME-TDLHAVIRAN  102 (337)
T ss_pred             EcCCCeEEEEEeeccc--cCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCC--CceEEEEecccc-cCHHHHHhcC
Confidence            4567899999988632  11123345677899999999 9999999999886532  235899999996 6999888653


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-------------cCCCc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-------------ENKKY  147 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-------------~~~~t  147 (218)
                           .+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++...             ...++
T Consensus       103 -----~~~~~~~~~i~~qi~~~L~~LH~--~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~  175 (337)
T cd07852         103 -----ILEDVHKRYIMYQLLKALKYIHS--GNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVAT  175 (337)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhccccc
Confidence                 47888999999999999999999  77999999999999999999999999988641             13467


Q ss_pred             ccccccccCC---CCch----------hhhhhhCCCCCCcchhh
Q psy238          148 LSATRQTYGR---PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       148 ~~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ..|+|||+..   ..+.          ++++++|+.||.+....
T Consensus       176 ~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~  219 (337)
T cd07852         176 RWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTL  219 (337)
T ss_pred             ccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChH
Confidence            8899999621   1111          78999999999765443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.91  E-value=3.1e-23  Score=164.82  Aligned_cols=160  Identities=24%  Similarity=0.329  Sum_probs=130.1

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||+|.+...   ........+..|+.++..++||||+++++++.+..    ..+++|+|+++++|.+++.....  .
T Consensus        28 ~~~vaiK~~~~~---~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~~i~e~~~~~~l~~~~~~~~~--~   98 (258)
T smart00219       28 EVEVAVKTLKED---ADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEE----PLMIVMEYMEGGDLLDYLRKNRP--K   98 (258)
T ss_pred             CceEEEEEccCC---CChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC----eeEEEEeccCCCCHHHHHHhhhh--c
Confidence            488999999743   22225678889999999999999999999987753    58999999999999999986532  1


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccccccC
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTYG  156 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~~  156 (218)
                      .+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...         ...+++.|+|||..
T Consensus        99 ~~~~~~~~~~~~ql~~~l~~lh~--~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~  176 (258)
T smart00219       99 ELSLSDLLSFALQIARGMEYLES--KNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESL  176 (258)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhc--CCeeecccccceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHh
Confidence            28999999999999999999999  77999999999999999999999999998652         12366889999963


Q ss_pred             --CCCch----------hhhhhh-CCCCCCcch
Q psy238          157 --RPISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       157 --~~~~~----------~~ei~t-g~~p~~~~~  176 (218)
                        ..++.          ++++++ |..||....
T Consensus       177 ~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~  209 (258)
T smart00219      177 KDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMS  209 (258)
T ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCC
Confidence              22222          578887 788887643

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.91  E-value=2e-23  Score=166.19  Aligned_cols=160  Identities=18%  Similarity=0.311  Sum_probs=128.4

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..+|+|.+....     .....+.+|+.+++.+.||+|+++++++....    .+++||+|+++++|.+++....   
T Consensus        27 ~~~~~~~k~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~~~~~~---   94 (256)
T cd05112          27 EKRKVAIKTIREGA-----MSEEDFIEEAQVMMKLSHPKLVQLYGVCTERS----PICLVFEFMEHGCLSDYLRAQR---   94 (256)
T ss_pred             CCCeEEEEECCCCC-----CCHHHHHHHHHHHHhCCCCCeeeEEEEEccCC----ceEEEEEcCCCCcHHHHHHhCc---
Confidence            36789999886321     12345788999999999999999999986644    5899999999999999987643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||++...         ...++..|+|||+
T Consensus        95 ~~~~~~~~~~~~~~l~~~l~~lH~--~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~  172 (256)
T cd05112          95 GKFSQETLLGMCLDVCEGMAYLES--SNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEV  172 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH--CCccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhH
Confidence            348899999999999999999999  77999999999999999999999999987641         2234568999997


Q ss_pred             CC--CCch----------hhhhhh-CCCCCCcchhh
Q psy238          156 GR--PISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       156 ~~--~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      ..  .++.          ++++++ |..||.....+
T Consensus       173 ~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~  208 (256)
T cd05112         173 FSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNS  208 (256)
T ss_pred             hccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHH
Confidence            32  2222          688887 99999765443

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.91  E-value=2.3e-23  Score=166.50  Aligned_cols=165  Identities=18%  Similarity=0.236  Sum_probs=134.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|++.....   ......+.+|+.+++.+.|+||+++++.+....    .+++||+++++++|.+++.....
T Consensus        23 ~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~iv~e~~~~~~l~~~~~~~~~   95 (267)
T cd06610          23 LPNNEKVAIKRIDLEKC---QTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGD----ELWLVMPYLSGGSLLDIMKSSYP   95 (267)
T ss_pred             cCCCcEEEEEEeccCCc---chHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCC----EEEEEEeccCCCcHHHHHHHhcc
Confidence            45788999999874321   225677899999999999999999999887643    68999999999999999976432


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCcccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYLSA  150 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~~y  150 (218)
                       ...+++..+..++.|++.||.|||+  .+++|+||+|+||++++++.++|+|||++..            ....++..|
T Consensus        96 -~~~~~~~~~~~~~~ql~~al~~lh~--~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y  172 (267)
T cd06610          96 -RGGLDEAIIATVLKEVLKGLEYLHS--NGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCW  172 (267)
T ss_pred             -cCCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhh
Confidence             1348999999999999999999999  7799999999999999999999999998764            112477889


Q ss_pred             cccccCCC---Cch----------hhhhhhCCCCCCcchh
Q psy238          151 TRQTYGRP---ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~~~---~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +|||+...   ++.          +++|++|..||.....
T Consensus       173 ~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~  212 (267)
T cd06610         173 MAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP  212 (267)
T ss_pred             cChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccCh
Confidence            99996221   111          7999999999976543

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0695|consensus

Probab=99.91  E-value=9.2e-25  Score=174.59  Aligned_cols=161  Identities=19%  Similarity=0.245  Sum_probs=132.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..|.+.||+|+++.. ..+......-++.|-.+..+. +||++|-|+.+|...    .++++|.||++||+|.-.++..+
T Consensus       272 ~~t~qiyamkvvkke-l~nddedidwvqtek~vfe~asn~pflvglhscfqte----srlffvieyv~ggdlmfhmqrqr  346 (593)
T KOG0695|consen  272 KKTDQIYAMKVVKKE-LVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTE----SRLFFVIEYVNGGDLMFHMQRQR  346 (593)
T ss_pred             cccceeeehhhHHHH-hcCCcccchhHHhhHHHHHhccCCCeEEehhhhhccc----ceEEEEEEEecCcceeeehhhhh
Confidence            457789999999843 222223333455566666555 899999999998764    37999999999999998888765


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .    +|++.++.+...|+.||.|||+  +|||.||||.+|+|+|..|+++++|+|++..        .+.+||+.|+||
T Consensus       347 k----lpeeharfys~ei~lal~flh~--rgiiyrdlkldnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyiap  420 (593)
T KOG0695|consen  347 K----LPEEHARFYSAEICLALNFLHE--RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAP  420 (593)
T ss_pred             c----CcHHHhhhhhHHHHHHHHHHhh--cCeeeeeccccceEEccCCceeecccchhhcCCCCCcccccccCCCcccch
Confidence            4    9999999999999999999999  8899999999999999999999999999865        678999999999


Q ss_pred             ccCC--CC--ch--------hhhhhhCCCCCCc
Q psy238          154 TYGR--PI--SG--------QYEIVTKTNNVTE  174 (218)
Q Consensus       154 E~~~--~~--~~--------~~ei~tg~~p~~~  174 (218)
                      |+..  .+  +.        ++||+.|+.||+-
T Consensus       421 eilrgeeygfsvdwwalgvlmfemmagrspfdi  453 (593)
T KOG0695|consen  421 EILRGEEYGFSVDWWALGVLMFEMMAGRSPFDI  453 (593)
T ss_pred             hhhcccccCceehHHHHHHHHHHHHcCCCCcce
Confidence            9732  21  11        7999999999973

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.91  E-value=2.2e-23  Score=172.74  Aligned_cols=166  Identities=20%  Similarity=0.188  Sum_probs=131.4

Q ss_pred             CCCCCcEEEEEEeecccccccH----------HHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFK----------AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSG   71 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~----------~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~   71 (218)
                      |..+|..||||.+.........          .....+.+|+.++..++||||+++++++....    .+++||||+. +
T Consensus        30 ~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~  104 (335)
T PTZ00024         30 DTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD----FINLVMDIMA-S  104 (335)
T ss_pred             ECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC----cEEEEEeccc-c
Confidence            4568999999998753221100          01124678999999999999999999987543    6899999996 6


Q ss_pred             CHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------
Q psy238           72 SLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------  142 (218)
Q Consensus        72 sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------  142 (218)
                      +|.+++...    ..+++..+..++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++...         
T Consensus       105 ~l~~~l~~~----~~~~~~~~~~~~~ql~~aL~~LH~--~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~  178 (335)
T PTZ00024        105 DLKKVVDRK----IRLTESQVKCILLQILNGLNVLHK--WYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTL  178 (335)
T ss_pred             CHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHh--CCeecccccHHHeEECCCCCEEECCccceeecccccccccc
Confidence            999998754    348999999999999999999999  67999999999999999999999999987542         


Q ss_pred             -------------cCCCcccccccccCCC---Cch----------hhhhhhCCCCCCcchhh
Q psy238          143 -------------ENKKYLSATRQTYGRP---ISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       143 -------------~~~~t~~y~aPE~~~~---~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                                   ...++..|+|||+...   .+.          ++++++|..||......
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~  240 (335)
T PTZ00024        179 SKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEI  240 (335)
T ss_pred             cccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                         2345778999997321   122          68999999999766543

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.91  E-value=4.9e-23  Score=165.23  Aligned_cols=168  Identities=16%  Similarity=0.228  Sum_probs=133.0

Q ss_pred             CCcEEEEEEeeccccc------ccHHHHHHHHHHHHHhhc-CCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHH
Q psy238            5 EGVEVVWNEVQFSERK------NFKAQEEKIQQVFENLTQ-LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~------~~~~~~~~~~~ei~~l~~-l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      ++..||+|.+......      ........+..|+.++.. ++||||+++++++...+    +.++||||+++++|.+++
T Consensus        25 ~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~l  100 (269)
T cd08528          25 GQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEND----RLYIVMDLIEGAPLGEHF  100 (269)
T ss_pred             CCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCC----eEEEEEecCCCCcHHHHH
Confidence            5678999988643211      223344567788887765 79999999999987643    689999999999999998


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccc
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                      .........++...++.++.|++.||.|||+. .+++|+||+|+|||++.++.++|+|||.+..       ....++..|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  179 (269)
T cd08528         101 NSLKEKKQRFTEERIWNIFVQMVLALRYLHKE-KRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTSVVGTILY  179 (269)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHHhccC-CceeecCCCHHHEEECCCCcEEEecccceeecccccccccccCcccC
Confidence            76443345689999999999999999999961 4599999999999999999999999998865       245678899


Q ss_pred             cccccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          151 TRQTYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +|||+..  .++.          ++++++|..||.....
T Consensus       180 ~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~  218 (269)
T cd08528         180 SCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNM  218 (269)
T ss_pred             cChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCH
Confidence            9999733  2222          6999999999975543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.91  E-value=3.2e-23  Score=163.70  Aligned_cols=160  Identities=26%  Similarity=0.357  Sum_probs=134.3

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|++....    ......+.+|+.+++.+.||+|+++++++....    ..+++++|+++++|.+++.... 
T Consensus        22 ~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~l~~e~~~~~~L~~~~~~~~-   92 (253)
T cd05122          22 KRTGKEVAIKVIKLES----KEKKEKIINEIQILKKCKHPNIVKYYGSYLKKD----ELWIVMEFCSGGSLKDLLKSTN-   92 (253)
T ss_pred             CCCCcEEEEEEecccc----hhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC----eEEEEEecCCCCcHHHHHhhcC-
Confidence            4578899999997431    245678889999999999999999999987653    5899999999999999988753 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-------cCCCccccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-------ENKKYLSATRQTY  155 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-------~~~~t~~y~aPE~  155 (218)
                        ..+++..+..++.|++.||.+||+  .+++|+||+|+||+++.++.++|+|||.+...       ...++..|+|||+
T Consensus        93 --~~~~~~~~~~i~~~i~~~l~~lh~--~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~  168 (253)
T cd05122          93 --QTLTESQIAYVCKELLKGLEYLHS--NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEV  168 (253)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHhhc--CCEecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHH
Confidence              358999999999999999999999  77999999999999999999999999987652       3456889999997


Q ss_pred             CC--CCch----------hhhhhhCCCCCCcc
Q psy238          156 GR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       156 ~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ..  ..+.          ++++++|..||...
T Consensus       169 ~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  200 (253)
T cd05122         169 INGKPYDYKADIWSLGITAIELAEGKPPYSEL  200 (253)
T ss_pred             HcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            32  2221          69999999999765

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG0669|consensus

Probab=99.91  E-value=2.6e-25  Score=171.46  Aligned_cols=171  Identities=17%  Similarity=0.285  Sum_probs=136.6

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCC----CCeEEEEEeccCCCCHHHHHH
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND----KPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      ..+|+.||+|.+-..+..  .......++|+.+|+.+.|+|++.++..|......    ...+|+||++|+ .+|.-++.
T Consensus        39 ~n~~kkvalkkvlmeneK--eGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~ce-hDLaGlLs  115 (376)
T KOG0669|consen   39 KNTGKKVALKKVLMENEK--EGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLVFDFCE-HDLAGLLS  115 (376)
T ss_pred             cCccchhHHHHHHHhccc--cCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeeeHHHhh-hhHHHHhc
Confidence            457788899877654222  33456788999999999999999999988664332    334899999996 69999998


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCC
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKK  146 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~  146 (218)
                      ...   -.+++..+..++.++..||.|+|+  ..|+|||+||.|+||+.+|.++|+|||+++.            ...+.
T Consensus       116 n~~---vr~sls~Ikk~Mk~Lm~GL~~iHr--~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvv  190 (376)
T KOG0669|consen  116 NRK---VRFSLSEIKKVMKGLMNGLYYIHR--NKILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVV  190 (376)
T ss_pred             Ccc---ccccHHHHHHHHHHHHHHHHHHHH--hhHHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCccccee
Confidence            753   359999999999999999999999  6699999999999999999999999999854            23445


Q ss_pred             ccccccccc--CC-----CCc------hhhhhhhCCCCCCcchhhhhH
Q psy238          147 YLSATRQTY--GR-----PIS------GQYEIVTKTNNVTEKKKEKEE  181 (218)
Q Consensus       147 t~~y~aPE~--~~-----~~~------~~~ei~tg~~p~~~~~~ee~~  181 (218)
                      |.+|.+||+  |.     +++      .+.+||++..-|.+..+..+.
T Consensus       191 TLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql  238 (376)
T KOG0669|consen  191 TLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQL  238 (376)
T ss_pred             eeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHH
Confidence            999999996  22     222      278999999888877665543

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.91  E-value=2.5e-23  Score=172.32  Aligned_cols=162  Identities=15%  Similarity=0.154  Sum_probs=128.2

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      |..||+|.+...  .........+.+|+.++..+ .||||+++++.+.........++++++++. ++|.+++...    
T Consensus        27 ~~~~aiK~~~~~--~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~----   99 (332)
T cd07857          27 EETVAIKKITNV--FSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLYEELME-ADLHQIIRSG----   99 (332)
T ss_pred             CceEEEEEeccc--cccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEEEeccc-CCHHHHHhcC----
Confidence            788999998732  12233456778899999999 599999999876543222345789999985 7999988654    


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCcccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYLSATR  152 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~~y~a  152 (218)
                      ..+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..            ....++..|+|
T Consensus       100 ~~~~~~~~~~~~~qi~~aL~~LH~--~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~a  177 (332)
T cd07857         100 QPLTDAHFQSFIYQILCGLKYIHS--ANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRA  177 (332)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccC
Confidence            348999999999999999999999  7799999999999999999999999998864            12357889999


Q ss_pred             cccC---CCCch----------hhhhhhCCCCCCcch
Q psy238          153 QTYG---RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~~---~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||+.   ...+.          ++++++|..||....
T Consensus       178 PE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~  214 (332)
T cd07857         178 PEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKD  214 (332)
T ss_pred             cHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCC
Confidence            9963   22222          688999999997654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.91  E-value=3.7e-23  Score=163.98  Aligned_cols=165  Identities=26%  Similarity=0.356  Sum_probs=137.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..|++|++....  ........+.+|+.+++.++||||+++++++.+..  ...+++|+||+++++|.+++....
T Consensus        21 ~~~~~~~~~ik~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~~~~~~   96 (260)
T cd06606          21 DKDTGELMAVKSVELSG--DSEEELEALEREIRILSSLQHPNIVRYYGSERDEE--KNTLNIFLEYVSGGSLSSLLKKFG   96 (260)
T ss_pred             ECCCCcEEEEEEeeccc--cchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCC--CCeEEEEEEecCCCcHHHHHHHcC
Confidence            34578999999987542  22456678899999999999999999999987652  236899999999999999998653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                          .+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..          ....++..|+
T Consensus        97 ----~~~~~~~~~~~~~l~~~l~~lh~--~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~  170 (260)
T cd06606          97 ----KLPEPVIRKYTRQILEGLAYLHS--NGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWM  170 (260)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCcccc
Confidence                58999999999999999999999  7799999999999999999999999998765          2345788999


Q ss_pred             ccccCCC--Cch----------hhhhhhCCCCCCcch
Q psy238          152 RQTYGRP--ISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       152 aPE~~~~--~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |||....  .+.          ++++++|..||....
T Consensus       171 ~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  207 (260)
T cd06606         171 APEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG  207 (260)
T ss_pred             CHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9997321  111          699999999997665

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.91  E-value=2.3e-23  Score=169.83  Aligned_cols=167  Identities=22%  Similarity=0.293  Sum_probs=130.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC------CCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH------NDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~------~~~~~~~lv~e~~~~~sL~~   75 (218)
                      +..+|..||||.+......  ......+.+|+.+++.++||||+++++++.+..      .+...+++||||+++ +|..
T Consensus        28 ~~~~~~~v~iK~~~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~  104 (302)
T cd07864          28 DKDTGELVALKKVRLDNEK--EGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMG  104 (302)
T ss_pred             ECCCCcEEEEEEEeecccc--cCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHH
Confidence            3457899999999754211  223346678999999999999999999886643      123378999999974 8877


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCC
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKK  146 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~  146 (218)
                      ++....   ..+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++...         ...+
T Consensus       105 ~l~~~~---~~~~~~~~~~i~~qi~~aL~~LH~--~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  179 (302)
T cd07864         105 LLESGL---VHFSEDHIKSFMKQLLEGLNYCHK--KNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVI  179 (302)
T ss_pred             HHhcCC---CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEECCCCcEEeCcccccccccCCccccccccee
Confidence            776542   358999999999999999999999  77999999999999999999999999988752         1234


Q ss_pred             cccccccccCC---CCch----------hhhhhhCCCCCCcch
Q psy238          147 YLSATRQTYGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       147 t~~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +..|+|||+..   ..+.          +++|++|+.||....
T Consensus       180 ~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~  222 (302)
T cd07864         180 TLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQ  222 (302)
T ss_pred             ccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            67899999632   1122          688999999997543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG1035|consensus

Probab=99.91  E-value=2.5e-24  Score=194.02  Aligned_cols=146  Identities=22%  Similarity=0.328  Sum_probs=120.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC--------------------------
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH--------------------------   55 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~--------------------------   55 (218)
                      ++-+|+.||||.+....   .......+.+|+.+|.+++|||||+++..|..+.                          
T Consensus       500 NKlDGr~YAIKKIpl~~---s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~ei~~~~~~~~sQs~s~~~~~  576 (1351)
T KOG1035|consen  500 NKLDGREYAIKKIPLKA---SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVLEIVASDSESRSQSASKYNGV  576 (1351)
T ss_pred             ecccchhhhhhhccCch---HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccccccccccchhhhcccCCCcccc
Confidence            46789999999998642   4567778999999999999999999988765422                          


Q ss_pred             ---------------------------C----------------------------------------------------
Q psy238           56 ---------------------------N----------------------------------------------------   56 (218)
Q Consensus        56 ---------------------------~----------------------------------------------------   56 (218)
                                                 .                                                    
T Consensus       577 ~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e~~~~~d~~~ess~s~~~~~  656 (1351)
T KOG1035|consen  577 DIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSEGSVILDDTSESSESIPKTE  656 (1351)
T ss_pred             eeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccCCccccCcchhhhhhccccC
Confidence                                       0                                                    


Q ss_pred             --CC--------CeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe
Q psy238           57 --DK--------PRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ  126 (218)
Q Consensus        57 --~~--------~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~  126 (218)
                        ..        ..+|+-||||+..+|.+++......   -....+|++++||+.||.|+|+  .|||||||||.||+++
T Consensus       657 n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~---~~~d~~wrLFreIlEGLaYIH~--~giIHRDLKP~NIFLd  731 (1351)
T KOG1035|consen  657 NSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFN---SQRDEAWRLFREILEGLAYIHD--QGIIHRDLKPRNIFLD  731 (1351)
T ss_pred             CccccccccccceEEEEEHhhhhhhHHHHHHHhcccc---hhhHHHHHHHHHHHHHHHHHHh--CceeeccCCcceeEEc
Confidence              00        2378999999876677777654321   1478899999999999999999  7799999999999999


Q ss_pred             cCCcEEEeecCcccc--------------------------ccCCCccccccccc
Q psy238          127 HNGLVKIGCDTYTHT--------------------------IENKKYLSATRQTY  155 (218)
Q Consensus       127 ~~~~~ki~dfg~~~~--------------------------~~~~~t~~y~aPE~  155 (218)
                      +++.|+|+|||++..                          ++..||.-|+|||+
T Consensus       732 ~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEl  786 (1351)
T KOG1035|consen  732 SRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPEL  786 (1351)
T ss_pred             CCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHH
Confidence            999999999998765                          45689999999998

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.91  E-value=3e-23  Score=168.14  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=129.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||.+....   .......+.+|+.++.++. ||||+++++++....    ..+++|+|+. ++|.++....
T Consensus        25 ~~~~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~----~~~~~~e~~~-~~l~~l~~~~   96 (288)
T cd06616          25 HKPSGTIMAVKRIRSTV---DEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREG----DCWICMELMD-ISLDKFYKYV   96 (288)
T ss_pred             ECCCCCEEEEEEehhcc---ChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCC----cEEEEEeccc-CCHHHHHHHH
Confidence            45678999999987432   1245567889999999996 999999999887643    4789999985 5776654321


Q ss_pred             c-ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           81 K-RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                      . .....+++..+..++.|++.||.|||+. .+++||||+|+|||++.++.++|+|||++..       ....++..|+|
T Consensus        97 ~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~-~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a  175 (288)
T cd06616          97 YEVLKSVIPEEILGKIAVATVKALNYLKEE-LKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMA  175 (288)
T ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHHHHhhc-CCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCccccccCccCccC
Confidence            1 1124589999999999999999999972 2699999999999999999999999998764       23467889999


Q ss_pred             cccCCC-----Cch----------hhhhhhCCCCCCcch
Q psy238          153 QTYGRP-----ISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~~~~-----~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||+...     ++.          ++++++|..||....
T Consensus       176 PE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  214 (288)
T cd06616         176 PERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN  214 (288)
T ss_pred             HHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc
Confidence            997321     222          689999999997543

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.91  E-value=1.7e-23  Score=172.94  Aligned_cols=169  Identities=21%  Similarity=0.209  Sum_probs=135.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||.+...  .........+.+|+.+++.++||||+++++++.... .....+|+||+|++ ++|.+++...
T Consensus        21 ~~~~~~~~~iK~~~~~--~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~   97 (330)
T cd07834          21 DKRTGRKVAIKKISNV--FDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELME-TDLHKVIKSP   97 (330)
T ss_pred             eCCCCcEEEEEeeccc--cccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEecchh-hhHHHHHhCC
Confidence            3457899999998743  112345567889999999999999999999987754 22346899999996 6898888754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------cCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------ENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------~~~~t~~  149 (218)
                          ..+++..++.++.|++.||.|||+  .||+|+||+|.|||++.++.++|+|||++...           ...++..
T Consensus        98 ----~~l~~~~~~~i~~~l~~~l~~LH~--~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~  171 (330)
T cd07834          98 ----QPLTDDHIQYFLYQILRGLKYLHS--ANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRW  171 (330)
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccC
Confidence                359999999999999999999999  77999999999999999999999999988752           2345778


Q ss_pred             ccccccCC---CCch----------hhhhhhCCCCCCcchhhh
Q psy238          150 ATRQTYGR---PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       150 y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+|||+..   .++.          ++++++|..||.+...++
T Consensus       172 y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~  214 (330)
T cd07834         172 YRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYID  214 (330)
T ss_pred             cCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHH
Confidence            99999732   2222          689999999998776543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.91  E-value=2e-23  Score=168.00  Aligned_cols=165  Identities=22%  Similarity=0.302  Sum_probs=134.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|++..+... .......+..|+.++..+. ||||+++++++....    .+++||+++++++|.+++...
T Consensus        22 ~~~~~~~~~ik~~~~~~~~-~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~   96 (280)
T cd05581          22 EKETNKEYAIKILDKRQLI-KEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEE----NLYFVLEYAPNGELLQYIRKY   96 (280)
T ss_pred             EcCCCCEEEEEEechHhcc-chHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCc----eEEEEEcCCCCCcHHHHHHHc
Confidence            3458999999998753221 2334467788999999998 999999999886643    589999999999999999865


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc------------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI------------------  142 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~------------------  142 (218)
                      .    .+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++++|||++...                  
T Consensus        97 ~----~l~~~~~~~i~~ql~~~l~~Lh~--~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~  170 (280)
T cd05581          97 G----SLDEKCTRFYAAEILLALEYLHS--KGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDS  170 (280)
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCccccc
Confidence            3    49999999999999999999999  67999999999999999999999999987641                  


Q ss_pred             ----------cCCCcccccccccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          143 ----------ENKKYLSATRQTYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       143 ----------~~~~t~~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                                ...++..|+|||+..  ..+.          ++++++|..||.....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~  227 (280)
T cd05581         171 QIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE  227 (280)
T ss_pred             cccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccH
Confidence                      124578899999622  2221          6899999999987653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.90  E-value=2.2e-23  Score=173.45  Aligned_cols=164  Identities=16%  Similarity=0.168  Sum_probs=129.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||||.+....  ........+.+|+.++..++||||+++++++.....  ....+|+|++|+. .+|..++. 
T Consensus        36 ~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-  111 (342)
T cd07879          36 DKRTGEKVAIKKLSRPF--QSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQ-TDLQKIMG-  111 (342)
T ss_pred             eCCCCcEEEEEEecCcc--ccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEecccc-cCHHHHHc-
Confidence            45689999999987431  112334567889999999999999999999865432  2235799999995 57776652 


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                           ..+++..+..++.|++.||.|||+  .+++||||+|+|||++.++.++|+|||++..     ....++..|+|||
T Consensus       112 -----~~~~~~~~~~~~~qi~~aL~~LH~--~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE  184 (342)
T cd07879         112 -----HPLSEDKVQYLVYQMLCGLKYIHS--AGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPE  184 (342)
T ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCCCCceeeecccChh
Confidence                 248899999999999999999999  7799999999999999999999999999865     2345678899999


Q ss_pred             cCC---CCch----------hhhhhhCCCCCCcch
Q psy238          155 YGR---PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~~~---~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +..   .++.          ++++++|+.||.+..
T Consensus       185 ~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~  219 (342)
T cd07879         185 VILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD  219 (342)
T ss_pred             hhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            732   2221          799999999998654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.90  E-value=2.8e-23  Score=186.38  Aligned_cols=143  Identities=20%  Similarity=0.239  Sum_probs=121.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++..... ........+..|+.++..+.||||+++++++....    ++|+||||+.+++|.+++... 
T Consensus        25 ~~~~~~~vAiKvi~~~~~-~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~----~~~lVmEy~~g~~L~~li~~~-   98 (669)
T cd05610          25 KKNNSKLYAVKVVKKADM-INKNMVHQVQAERDALALSKSPFIVHLYYSLQSAN----NVYLVMEYLIGGDVKSLLHIY-   98 (669)
T ss_pred             ECCCCcEEEEEEEehhhc-cCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECC----EEEEEEeCCCCCCHHHHHHhc-
Confidence            346789999999974322 22345567889999999999999999998886643    699999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+|+.|++|
T Consensus        99 ---~~l~~~~~~~i~~qil~aL~yLH~--~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~~~~~~~~~~~t~~~~~p  173 (669)
T cd05610          99 ---GYFDEEMAVKYISEVALALDYLHR--HGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLNRELNMMDILTTPSMAKP  173 (669)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCEEeCCccHHHEEEcCCCCEEEEeCCCCccccCCcccccccccCccccCc
Confidence               348899999999999999999999  6799999999999999999999999999875        345678899999


Q ss_pred             cc
Q psy238          154 TY  155 (218)
Q Consensus       154 E~  155 (218)
                      |.
T Consensus       174 e~  175 (669)
T cd05610         174 KN  175 (669)
T ss_pred             cc
Confidence            84

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.90  E-value=6.4e-23  Score=168.21  Aligned_cols=163  Identities=21%  Similarity=0.275  Sum_probs=131.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...... .......+.+|+.+++.++|||++++++++....    ..++||||+. ++|.+++....
T Consensus        36 ~~~~~~~~~ik~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~  109 (308)
T cd06634          36 DVRNSEVVAIKKMSYSGKQ-SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH----TAWLVMEYCL-GSASDLLEVHK  109 (308)
T ss_pred             EcCCCcEEEEEEEeccccc-ChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCC----eeEEEEEccC-CCHHHHHHHcC
Confidence            3567889999998743222 2344566788999999999999999999987643    5899999996 68888776543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccC-
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYG-  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~-  156 (218)
                         .+++...+..++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..    ....++..|+|||+. 
T Consensus       110 ---~~l~~~~~~~~~~~l~~~l~~LH~--~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~  184 (308)
T cd06634         110 ---KPLQEVEIAAVTHGALQGLAYLHS--HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVIL  184 (308)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHhEEECCCCcEEECCcccceeecCcccccCCccccCHHHHh
Confidence               348899999999999999999999  7799999999999999999999999998765    345678899999962 


Q ss_pred             ----CCCch----------hhhhhhCCCCCCcc
Q psy238          157 ----RPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       157 ----~~~~~----------~~ei~tg~~p~~~~  175 (218)
                          ...+.          ++++++|..||...
T Consensus       185 ~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  217 (308)
T cd06634         185 AMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (308)
T ss_pred             hcccCCCCcccchHHHHHHHHHHHcCCCCCccc
Confidence                11211          68999999998654

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.90  E-value=4.1e-23  Score=166.74  Aligned_cols=166  Identities=21%  Similarity=0.297  Sum_probs=133.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+....  ........+.+|+.+++.++|||++++++++....  ...+++||+|++ ++|..++....
T Consensus        20 ~~~~~~~~~~K~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--~~~~~lv~e~~~-~~l~~~~~~~~   94 (287)
T cd07840          20 NKKTGELVALKKIRMEN--EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKG--KGSIYMVFEYMD-HDLTGLLDSPE   94 (287)
T ss_pred             ECCCCeEEEEEEEeccc--ccccchHHHHHHHHHHHhccCCCeeeheeeEecCC--CCcEEEEecccc-ccHHHHHhccC
Confidence            34578899999998542  12334466788999999999999999999987652  246999999996 59998887542


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~a  152 (218)
                         ..+++..++.++.||+.||.|||+  .+++|+||+|+||+++.++.++|+|||.+...         ...++..|+|
T Consensus        95 ---~~~~~~~~~~i~~~i~~al~~LH~--~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~  169 (287)
T cd07840          95 ---VKFTESQIKCYMKQLLEGLQYLHS--NGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRP  169 (287)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCC
Confidence               358999999999999999999999  77999999999999999999999999988752         2345778999


Q ss_pred             ccc--CC-CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTY--GR-PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~--~~-~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||.  +. .++.          ++++++|..||.....
T Consensus       170 PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~  207 (287)
T cd07840         170 PELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTE  207 (287)
T ss_pred             ceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            995  21 2222          6899999999976553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG0670|consensus

Probab=99.90  E-value=3.3e-24  Score=179.21  Aligned_cols=167  Identities=19%  Similarity=0.267  Sum_probs=137.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC------CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE------HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~------hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      |..-|.+||||+|...     ......=+.|++||.+|+      --++++|+..|....    |+|||||.+ ..+|.+
T Consensus       453 D~~r~~~vAiKIIRnN-----E~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hkn----HLClVFE~L-slNLRe  522 (752)
T KOG0670|consen  453 DQARGQEVAIKIIRNN-----EVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKN----HLCLVFEPL-SLNLRE  522 (752)
T ss_pred             ccCCCCeeEEEEeecc-----hHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcc----eeEEEehhh-hchHHH
Confidence            5677889999999743     344455678999999985      356999988886643    899999999 489999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc------ccCCCcc
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT------IENKKYL  148 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~------~~~~~t~  148 (218)
                      +|..++.+ -.+.+..+..|+.|++.||..|-.|+  |+|.||||+||||++. ..++|||||.+..      .+...+-
T Consensus       523 vLKKyG~n-vGL~ikaVRsYaqQLflALklLK~c~--vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneitPYLVSR  599 (752)
T KOG0670|consen  523 VLKKYGRN-VGLHIKAVRSYAQQLFLALKLLKKCG--VLHADIKPDNILVNESKNILKLCDFGSASFASENEITPYLVSR  599 (752)
T ss_pred             HHHHhCcc-cceeehHHHHHHHHHHHHHHHHHhcC--eeecccCccceEeccCcceeeeccCccccccccccccHHHHHH
Confidence            99998754 34888999999999999999999987  9999999999999876 7899999998876      4455567


Q ss_pred             ccccccc--CCCCc----------hhhhhhhCCCCCCcchhhhhH
Q psy238          149 SATRQTY--GRPIS----------GQYEIVTKTNNVTEKKKEKEE  181 (218)
Q Consensus       149 ~y~aPE~--~~~~~----------~~~ei~tg~~p~~~~~~ee~~  181 (218)
                      .|.|||+  |-+++          .+||+|||+.-|.+.......
T Consensus       600 FYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~ML  644 (752)
T KOG0670|consen  600 FYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQML  644 (752)
T ss_pred             hccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHH
Confidence            8999996  33333          289999999999988776544

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.90  E-value=6.9e-23  Score=165.23  Aligned_cols=164  Identities=18%  Similarity=0.210  Sum_probs=128.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|.+..... .  .......+|+.++..+. ||||+++++++.+..  .+.+++||||++ ++|.+++...
T Consensus        20 ~~~~~~~~aik~~~~~~~-~--~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~--~~~~~lv~e~~~-~~l~~~l~~~   93 (282)
T cd07831          20 SRKTGKYYAIKCMKKHFK-S--LEQVNNLREIQALRRLSPHPNILRLIEVLFDRK--TGRLALVFELMD-MNLYELIKGR   93 (282)
T ss_pred             EcCCCcEEEEEEehhccC-C--chhhhHHHHHHHHhhcCCCCCccceEEEEecCC--CCcEEEEEecCC-ccHHHHHHhc
Confidence            356789999998874311 1  12223457888888885 999999999987642  236899999996 6888888754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQ  153 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aP  153 (218)
                      .   ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++. +.++|+|||++..       ....++..|+||
T Consensus        94 ~---~~~~~~~~~~~~~qi~~~L~~LH~--~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aP  167 (282)
T cd07831          94 K---RPLPEKRVKSYMYQLLKSLDHMHR--NGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTEYISTRWYRAP  167 (282)
T ss_pred             c---CCCCHHHHHHHHHHHHHHHHHHHH--CCceecccCHHHEEEcC-CCeEEEecccccccccCCCcCCCCCCcccCCh
Confidence            3   358999999999999999999999  77999999999999999 9999999998865       223468889999


Q ss_pred             ccC---CCCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYG---RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~---~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+.   ...+.          +++|++|..||.....
T Consensus       168 E~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~  204 (282)
T cd07831         168 ECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNE  204 (282)
T ss_pred             hHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCH
Confidence            952   11122          7899999999976543

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>KOG2052|consensus

Probab=99.90  E-value=1e-23  Score=173.27  Aligned_cols=142  Identities=20%  Similarity=0.209  Sum_probs=120.5

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC--CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL--EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l--~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      .+.|+.||||++..       .....+.+|.+|.+.+  +|+||+.+++.-..+..+-..+|||++|.+.|||.|||...
T Consensus       231 ~wrGe~VAVKiF~s-------rdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r~  303 (513)
T KOG2052|consen  231 RWRGEDVAVKIFSS-------RDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNRN  303 (513)
T ss_pred             cccCCceEEEEecc-------cchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHhhc
Confidence            46799999999973       3455677888887765  99999999887655444445799999999999999999874


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhc--CC----CCcccCCCCCCcEEEecCCcEEEeecCcccc------------c
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHS--CS----PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------I  142 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~--~~----~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~  142 (218)
                           .++....++++..+++||.+||-  .|    ..|.|||||+.||||-.++.+.|+|+|++-.            +
T Consensus       304 -----tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N  378 (513)
T KOG2052|consen  304 -----TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPN  378 (513)
T ss_pred             -----cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCC
Confidence                 39999999999999999999993  11    4699999999999999999999999999754            6


Q ss_pred             cCCCcccccccccC
Q psy238          143 ENKKYLSATRQTYG  156 (218)
Q Consensus       143 ~~~~t~~y~aPE~~  156 (218)
                      ..+||-.|||||+.
T Consensus       379 ~rVGTKRYMAPEvL  392 (513)
T KOG2052|consen  379 PRVGTKRYMAPEVL  392 (513)
T ss_pred             CccceeeccChHHh
Confidence            78999999999983

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.90  E-value=3.8e-23  Score=169.01  Aligned_cols=169  Identities=20%  Similarity=0.261  Sum_probs=130.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC----CCCeEEEEEeccCCCCHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN----DKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~----~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +..+|..||||.+......  ......+.+|+.++..++||||+++++++.....    ....+++||+|+. ++|...+
T Consensus        29 ~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~-~~l~~~~  105 (311)
T cd07866          29 QIKTGRVVALKKILMHNEK--DGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMD-HDLSGLL  105 (311)
T ss_pred             ECCCCcEEEEEEEEeccCC--CCcchhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEEEEecCC-cCHHHHH
Confidence            4567899999998753221  1223456789999999999999999988765432    2346899999995 5787777


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------------
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------------  142 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------------  142 (218)
                      ....   ..+++..+..++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++...               
T Consensus       106 ~~~~---~~~~~~~~~~i~~~l~~al~~lH~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  180 (311)
T cd07866         106 ENPS---VKLTESQIKCYMLQLLEGINYLHE--NHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGT  180 (311)
T ss_pred             hccc---cCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccc
Confidence            6532   359999999999999999999999  77999999999999999999999999988641               


Q ss_pred             ----cCCCcccccccccCC---CCch----------hhhhhhCCCCCCcchhh
Q psy238          143 ----ENKKYLSATRQTYGR---PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       143 ----~~~~t~~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                          ...+++.|+|||+..   ..+.          ++++++|..||.+....
T Consensus       181 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~  233 (311)
T cd07866         181 RKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDI  233 (311)
T ss_pred             cccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHH
Confidence                123467799999621   1222          68999999999765554

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.90  E-value=4.2e-23  Score=166.45  Aligned_cols=164  Identities=20%  Similarity=0.278  Sum_probs=133.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+....  ........+.+|+.+++.++||||+++++++.+..    .+++||||++ ++|.+++....
T Consensus        20 ~~~~~~~~~ik~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~~v~e~~~-~~l~~~l~~~~   92 (283)
T cd05118          20 DKLTGEIVAIKKIKLRF--ESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKG----DLYLVFEFMD-TDLYKLIKDRQ   92 (283)
T ss_pred             cCCCCcEEEEEEecccc--ccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCC----CEEEEEeccC-CCHHHHHHhhc
Confidence            45689999999987542  22245567888999999999999999999987653    5899999996 59988887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------cCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------ENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||.+...        ...++..|+||
T Consensus        93 ---~~~~~~~~~~~~~~i~~~l~~LH~--~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~P  167 (283)
T cd05118          93 ---RGLPESLIKSYLYQLLQGLAFCHS--HGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAP  167 (283)
T ss_pred             ---ccCCHHHHHHHHHHHHHHHHHHHH--CCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCc
Confidence               358999999999999999999999  77999999999999999999999999987641        24467889999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |...   ..+.          ++++++|..||.....
T Consensus       168 E~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~  204 (283)
T cd05118         168 ELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSE  204 (283)
T ss_pred             HHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9722   2222          6899999999976654

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG1152|consensus

Probab=99.90  E-value=5.5e-24  Score=179.67  Aligned_cols=163  Identities=20%  Similarity=0.200  Sum_probs=130.0

Q ss_pred             CCCCCCcEEEEEEeecccccccHHH----HHHHHHHHHHhhcCC---CCcccceeeeeecCCCCCCeEEEEEecc-CCCC
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQ----EEKIQQVFENLTQLE---HPNIVKFHRYWTDTHNDKPRVIFITEYM-SSGS   72 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~----~~~~~~ei~~l~~l~---hp~iv~l~~~~~~~~~~~~~~~lv~e~~-~~~s   72 (218)
                      +++++..+|+||.+..+...-..-.    .-.+--||+||..++   |+||++++++|++.+    ++|++||.- +|.+
T Consensus       581 i~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd----~yyl~te~hg~gID  656 (772)
T KOG1152|consen  581 IHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDD----YYYLETEVHGEGID  656 (772)
T ss_pred             eecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCC----eeEEEecCCCCCcc
Confidence            4667788999999974321110000    112334899999997   999999999998865    589999986 5678


Q ss_pred             HHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCC
Q psy238           73 LKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKK  146 (218)
Q Consensus        73 L~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~  146 (218)
                      |.++|...++    +++..+..++.||+.|+.+||+  .+|||||||-+|++++.+|-++|+|||.+..      ...+|
T Consensus       657 LFd~IE~kp~----m~E~eAk~IFkQV~agi~hlh~--~~ivhrdikdenvivd~~g~~klidfgsaa~~ksgpfd~f~g  730 (772)
T KOG1152|consen  657 LFDFIEFKPR----MDEPEAKLIFKQVVAGIKHLHD--QGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKSGPFDVFVG  730 (772)
T ss_pred             hhhhhhccCc----cchHHHHHHHHHHHhccccccc--cCceecccccccEEEecCCeEEEeeccchhhhcCCCcceeee
Confidence            9999998754    9999999999999999999999  7899999999999999999999999998765      56899


Q ss_pred             ccccccccc--CCCCch-----------hhhhhhCCCCCC
Q psy238          147 YLSATRQTY--GRPISG-----------QYEIVTKTNNVT  173 (218)
Q Consensus       147 t~~y~aPE~--~~~~~~-----------~~ei~tg~~p~~  173 (218)
                      |..|.|||+  |..+-.           +|.|+-..+||.
T Consensus       731 tv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  731 TVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             eccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            999999998  333332           466666666664

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.90  E-value=1.1e-22  Score=164.33  Aligned_cols=169  Identities=20%  Similarity=0.228  Sum_probs=130.3

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC---CCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHH
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL---EHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l---~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      ..+|..||+|.+.....  .......+.+|+.++..+   .||||+++++++..... +...++++|||+. ++|.+++.
T Consensus        21 ~~~~~~~aiK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~-~~l~~~l~   97 (287)
T cd07838          21 LNTGRFVALKKVRVPLS--EEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD-QDLATYLS   97 (287)
T ss_pred             CCCCCEEEEEEeccccc--cchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhcc-cCHHHHHH
Confidence            34689999999975422  122334556677766555   69999999999887543 2234899999996 58999887


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                      ....  ..+++..++.++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..       ....++..|+
T Consensus        98 ~~~~--~~l~~~~~~~~~~~i~~al~~LH~--~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  173 (287)
T cd07838          98 KCPK--PGLPPETIKDLMRQLLRGVDFLHS--HRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVVTLWYR  173 (287)
T ss_pred             HccC--CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeccCChhhEEEccCCCEEEeccCcceeccCCccccccccccccc
Confidence            6432  358999999999999999999999  7799999999999999999999999998765       2334678899


Q ss_pred             ccccCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          152 RQTYGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       152 aPE~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |||+..  .++.          +++|++|..||......
T Consensus       174 ~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~  212 (287)
T cd07838         174 APEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEA  212 (287)
T ss_pred             ChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChH
Confidence            999732  2111          79999999999765543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG1095|consensus

Probab=99.90  E-value=3e-23  Score=187.47  Aligned_cols=166  Identities=15%  Similarity=0.234  Sum_probs=137.0

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc---
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN---   83 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~---   83 (218)
                      ..||||.+..   .........|++|..+|+.++|||||+++|++.+...    .++++|||.||+|..||+..+.+   
T Consensus       723 ~~vaiK~l~~---~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~----~~i~leyM~gGDL~sflr~~r~~~~~  795 (1025)
T KOG1095|consen  723 IQVAVKSLKR---LSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGP----PLILLEYMEGGDLLSFLRESRPAPFQ  795 (1025)
T ss_pred             eEEEEEeccc---cCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCC----cEEEehhcccCcHHHHHHhcccccCC
Confidence            3488888874   3446778899999999999999999999999988553    79999999999999999987321   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------cc-CCCccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IE-NKKYLSATRQ  153 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~-~~~t~~y~aP  153 (218)
                      ...+.....+.++.+|+.|+.||++  .++|||||..+|+|++....+||+|||+++.         .. ..-...||||
T Consensus       796 ~~~L~~~dLl~~a~dvA~G~~YLe~--~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~P  873 (1025)
T KOG1095|consen  796 PSNLSMRDLLAFALDVAKGMNYLES--KHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPP  873 (1025)
T ss_pred             CCCCCHHHHHHHHHHHhhhhHHHHh--CCCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCH
Confidence            2348889999999999999999999  7799999999999999999999999999984         11 2335799999


Q ss_pred             ccCC--CCch----------hhhhhh-CCCCCCcchhhhhH
Q psy238          154 TYGR--PISG----------QYEIVT-KTNNVTEKKKEKEE  181 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~t-g~~p~~~~~~ee~~  181 (218)
                      |...  .++.          ++||+| |..||.+....+.-
T Consensus       874 Esl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~  914 (1025)
T KOG1095|consen  874 ESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVL  914 (1025)
T ss_pred             HHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHH
Confidence            9632  3333          688776 78899888776653

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.90  E-value=3.2e-23  Score=172.42  Aligned_cols=164  Identities=20%  Similarity=0.249  Sum_probs=129.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCC----------CCeEEEEEeccCCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND----------KPRVIFITEYMSSG   71 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~----------~~~~~lv~e~~~~~   71 (218)
                      +..+|..||+|.+.....    .....+.+|+.+++.++||||+++++++......          ...+|+||||++ +
T Consensus        26 ~~~~~~~v~iK~i~~~~~----~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~  100 (342)
T cd07854          26 DSDCDKRVAVKKIVLTDP----QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYME-T  100 (342)
T ss_pred             ECCCCcEEEEEEEecCCC----chHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccceEEEEeeccc-c
Confidence            567899999999875422    3446678899999999999999999877654321          125789999996 6


Q ss_pred             CHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-CCcEEEeecCcccc---------
Q psy238           72 SLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT---------  141 (218)
Q Consensus        72 sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~---------  141 (218)
                      +|.+++..     ..+++..++.++.|++.||.|||+  .+|+|+||+|+||+++. ++.++|+|||++..         
T Consensus       101 ~L~~~~~~-----~~l~~~~~~~~~~qi~~aL~~LH~--~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~  173 (342)
T cd07854         101 DLANVLEQ-----GPLSEEHARLFMYQLLRGLKYIHS--ANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKG  173 (342)
T ss_pred             cHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHEEEcCCCceEEECCcccceecCCcccccc
Confidence            89888753     248999999999999999999999  77999999999999974 56889999998864         


Q ss_pred             --ccCCCcccccccccC---CCCch----------hhhhhhCCCCCCcchh
Q psy238          142 --IENKKYLSATRQTYG---RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       142 --~~~~~t~~y~aPE~~---~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                        ....++..|+|||+.   ..++.          ++++++|+.||.....
T Consensus       174 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~  224 (342)
T cd07854         174 YLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHE  224 (342)
T ss_pred             ccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence              123567889999952   12211          7899999999976543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG4257|consensus

Probab=99.90  E-value=1.9e-23  Score=177.92  Aligned_cols=154  Identities=21%  Similarity=0.316  Sum_probs=130.8

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      -||||.++.   ...+...+.|+.|..+|+.+.|||||+|+|+|.+..     +|+|||.++-|-|..||....   ..+
T Consensus       420 aVAvKtCK~---d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P-----~WivmEL~~~GELr~yLq~nk---~sL  488 (974)
T KOG4257|consen  420 AVAVKTCKT---DCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQP-----MWIVMELAPLGELREYLQQNK---DSL  488 (974)
T ss_pred             eeeeehhcc---CCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccc-----eeEEEecccchhHHHHHHhcc---ccc
Confidence            599999884   233556889999999999999999999999998864     899999999999999999865   359


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc--C
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY--G  156 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~--~  156 (218)
                      +..+...+++||+.||.|||+  .++|||||..+|||+.....+||+|||+++.         ....-...|||||-  .
T Consensus       489 ~l~tL~ly~~Qi~talaYLeS--krfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINf  566 (974)
T KOG4257|consen  489 PLRTLTLYCYQICTALAYLES--KRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINF  566 (974)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh--hchhhhhhhhhheeecCcceeeecccchhhhccccchhhccccccceeecCccccch
Confidence            999999999999999999999  7799999999999999999999999999986         23344678999995  3


Q ss_pred             CCCch----------hhhhh-hCCCCCCc
Q psy238          157 RPISG----------QYEIV-TKTNNVTE  174 (218)
Q Consensus       157 ~~~~~----------~~ei~-tg~~p~~~  174 (218)
                      ..++.          ++||+ -|..||.+
T Consensus       567 RrFTtASDVWMFgVCmWEIl~lGvkPfqg  595 (974)
T KOG4257|consen  567 RRFTTASDVWMFGVCMWEILSLGVKPFQG  595 (974)
T ss_pred             hcccchhhHHHHHHHHHHHHHhcCCcccc
Confidence            34444          46654 48889864

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.90  E-value=4.1e-23  Score=171.89  Aligned_cols=166  Identities=19%  Similarity=0.200  Sum_probs=132.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||||++...  .........+.+|+.+++.+.||||+.+++++.....  ....+++|++|+ +++|.+++..
T Consensus        36 ~~~~~~~~aiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~  112 (343)
T cd07851          36 DTKTGRKVAIKKLSRP--FQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLNNIVKC  112 (343)
T ss_pred             ECCCCcEEEEEecccc--cchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEEecC-CCCHHHHHhc
Confidence            3457889999988642  1223344667889999999999999999887765332  223589999998 6799998875


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                           .++++..++.++.|++.||.|||+  .||+|+||+|+||+++.++.++|+|||++..     ....++..|+|||
T Consensus       113 -----~~l~~~~~~~~~~ql~~aL~~LH~--~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE  185 (343)
T cd07851         113 -----QKLSDDHIQFLVYQILRGLKYIHS--AGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPE  185 (343)
T ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHeEECCCCCEEEccccccccccccccCCcccccccCHH
Confidence                 348999999999999999999999  7799999999999999999999999999875     2346788899999


Q ss_pred             cCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          155 YGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +..   ..+.          ++++++|..||.....
T Consensus       186 ~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~  221 (343)
T cd07851         186 IMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDH  221 (343)
T ss_pred             HHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh
Confidence            632   1111          6899999999976543

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.90  E-value=9e-23  Score=164.45  Aligned_cols=164  Identities=21%  Similarity=0.277  Sum_probs=133.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....  ........+..|+.+++.+.||||+++++++.+..    .+++||+|++ ++|.+++....
T Consensus        20 ~~~~~~~~~iK~~~~~~--~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~----~~~~v~e~~~-~~l~~~i~~~~   92 (282)
T cd07829          20 DKKTGEIVALKKIRLDN--EEEGIPSTALREISLLKELKHPNIVKLLDVIHTER----KLYLVFEYCD-MDLKKYLDKRP   92 (282)
T ss_pred             ecCCCcEEEEEEecccc--ccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCC----ceEEEecCcC-cCHHHHHHhhc
Confidence            34578999999998542  12334456778999999999999999999987653    5899999996 69999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||.+..        ....++..|+||
T Consensus        93 ---~~~~~~~~~~~~~~i~~~l~~LH~--~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aP  167 (282)
T cd07829          93 ---GPLSPNLIKSIMYQLLRGLAYCHS--HRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAP  167 (282)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCChheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCCh
Confidence               348999999999999999999999  7799999999999999999999999998765        223446789999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..   .++.          ++++++|..||.....
T Consensus       168 E~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~  204 (282)
T cd07829         168 EILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSE  204 (282)
T ss_pred             HHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccH
Confidence            9632   2222          6899999999976554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0587|consensus

Probab=99.90  E-value=7e-23  Score=179.71  Aligned_cols=163  Identities=17%  Similarity=0.206  Sum_probs=135.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|+.+|+|+....     ....+.+..|..+|+.. +|||++.++++|.-... .+..+|||||||.|||..+++..
T Consensus        40 ~~~~~~~aa~kI~~~~-----~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn  114 (953)
T KOG0587|consen   40 HVKTGQLAAIKIMDPT-----EDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKN  114 (953)
T ss_pred             eeecCceeeeEeecCC-----ccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhh
Confidence            3567888999998854     22335567788888888 79999999998765433 35689999999999999999998


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSAT  151 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~  151 (218)
                      ..+  .++.+..+..+++.++.||.+||.  +.++|||++=.|||+..++.++++|||++..        .+..||+.||
T Consensus       115 ~~g--~rl~E~~IaYI~re~lrgl~HLH~--nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WM  190 (953)
T KOG0587|consen  115 TKG--NRLKEEWIAYILREILRGLAHLHN--NKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWM  190 (953)
T ss_pred             hcc--cchhhHHHHHHHHHHHHHHHHHhh--cceeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccc
Confidence            873  679999999999999999999999  7799999999999999999999999999865        7789999999


Q ss_pred             ccccCC-------CCch----------hhhhhhCCCCCC
Q psy238          152 RQTYGR-------PISG----------QYEIVTKTNNVT  173 (218)
Q Consensus       152 aPE~~~-------~~~~----------~~ei~tg~~p~~  173 (218)
                      |||+..       .++.          +.|+.-|..|+.
T Consensus       191 APEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~  229 (953)
T KOG0587|consen  191 APEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLC  229 (953)
T ss_pred             cceeeecccCCCCCcccccchhhccceeehhcCCCCCcc
Confidence            999722       1111          577777888875

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.90  E-value=1.4e-22  Score=163.68  Aligned_cols=163  Identities=22%  Similarity=0.247  Sum_probs=129.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|..||||.+....  . ........+|+..+..+. ||||+++++++.+.+    ..++||||+ +++|.+++....
T Consensus        21 ~~~~~~~~ik~~~~~~--~-~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~----~~~lv~e~~-~~~l~~~~~~~~   92 (283)
T cd07830          21 KETGELVAIKKMKKKF--Y-SWEECMNLREVKSLRKLNEHPNIVKLKEVFREND----ELYFVFEYM-EGNLYQLMKDRK   92 (283)
T ss_pred             CCCCcEEEEEEehhhc--c-chhHHHHHHHHHHHHhccCCCCchhHHHHhhcCC----cEEEEEecC-CCCHHHHHHhcc
Confidence            4568899999886421  1 122334457889999998 999999999987743    689999999 789999887653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      .  ..+++..+..++.|++.||.|||+  .+++|+||+|+||+++.++.++|+|||.+..       ....++..|+|||
T Consensus        93 ~--~~~~~~~~~~~~~~l~~~l~~Lh~--~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE  168 (283)
T cd07830          93 G--KPFSESVIRSIIYQILQGLAHIHK--HGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPE  168 (283)
T ss_pred             c--ccCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCCCCcccccCce
Confidence            1  358999999999999999999999  7799999999999999999999999998865       2345688899999


Q ss_pred             cCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          155 YGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +..   ..+.          ++++++|..||.....
T Consensus       169 ~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~  204 (283)
T cd07830         169 ILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSE  204 (283)
T ss_pred             eeecCcCcCCccchhhHHHHHHHHHhCCCccCCCCh
Confidence            621   1111          7999999999976543

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.89  E-value=6.9e-23  Score=178.54  Aligned_cols=141  Identities=16%  Similarity=0.212  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc-CCCCCHHHHHHHHHHHHHHH
Q psy238           25 QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN-VKKLPLSAWKRWCSQILSAL  103 (218)
Q Consensus        25 ~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~l  103 (218)
                      ....+.+|+.+|..++||||+++++++....    ..|+|++++. ++|..++....-. ........+..++.||+.||
T Consensus       206 ~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~----~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL  280 (501)
T PHA03210        206 AAIQLENEILALGRLNHENILKIEEILRSEA----NTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAV  280 (501)
T ss_pred             HHHHHHHHHHHHHhCCCCCcCcEeEEEEECC----eeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHH
Confidence            4456789999999999999999999997754    5899999984 6888877543211 12234567788999999999


Q ss_pred             HHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccccccC--CCCch----------h
Q psy238          104 SYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTYG--RPISG----------Q  162 (218)
Q Consensus       104 ~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~~--~~~~~----------~  162 (218)
                      .|||+  .+|+||||||+|||++.++.++|+|||++..         ....||..|+|||+.  ..++.          +
T Consensus       281 ~yLH~--~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil  358 (501)
T PHA03210        281 EYIHD--KKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLIL  358 (501)
T ss_pred             HHHHh--CCeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHH
Confidence            99999  7799999999999999999999999999864         235689999999973  23322          6


Q ss_pred             hhhhhCCCCC
Q psy238          163 YEIVTKTNNV  172 (218)
Q Consensus       163 ~ei~tg~~p~  172 (218)
                      |+|++|..++
T Consensus       359 ~ell~~~~~p  368 (501)
T PHA03210        359 LDMLSHDFCP  368 (501)
T ss_pred             HHHHHCCCCC
Confidence            8999887644

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.89  E-value=2.2e-22  Score=163.96  Aligned_cols=160  Identities=19%  Similarity=0.226  Sum_probs=125.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .+|..||||.+....   .......+..|+.++... .||||+++++++.+..    .+|+||+|+. ++|.+++.... 
T Consensus        38 ~~~~~~avK~~~~~~---~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~----~~~~v~e~~~-~~l~~l~~~~~-  108 (296)
T cd06618          38 KTGHVMAVKQMRRTG---NKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDS----DVFICMELMS-TCLDKLLKRIQ-  108 (296)
T ss_pred             CCCeEEEEEEEeccC---ChHHHHHHHHHHHHHHhccCCCchHhhheeeecCC----eEEEEeeccC-cCHHHHHHHhc-
Confidence            468999999997432   123345566677766666 5999999999987644    5899999984 68888776643 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQTY  155 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE~  155 (218)
                        ..+++..+..++.|++.||.|||+. .+|+|+||+|+||+++.++.++|+|||++..       ....++..|+|||+
T Consensus       109 --~~l~~~~~~~i~~~i~~~l~~lH~~-~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  185 (296)
T cd06618         109 --GPIPEDILGKMTVAIVKALHYLKEK-HGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPER  185 (296)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhh-CCEecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCCCCCccccCHhh
Confidence              3589999999999999999999972 2699999999999999999999999998764       22346788999997


Q ss_pred             CCCC------ch----------hhhhhhCCCCCCcc
Q psy238          156 GRPI------SG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       156 ~~~~------~~----------~~ei~tg~~p~~~~  175 (218)
                      ....      +.          ++++++|..||...
T Consensus       186 ~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  221 (296)
T cd06618         186 IDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNC  221 (296)
T ss_pred             cCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcc
Confidence            4321      11          79999999999754

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0671|consensus

Probab=99.89  E-value=3.1e-23  Score=167.57  Aligned_cols=164  Identities=16%  Similarity=0.180  Sum_probs=135.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC--CCc----ccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE--HPN----IVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~--hp~----iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      |..++..||||++..     .....++...|+++|+++.  .|+    +|.+.+||.-.    +++|+|+|.+ |.|+.+
T Consensus       110 D~~~~~~vAlKIik~-----V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyr----ghiCivfell-G~S~~d  179 (415)
T KOG0671|consen  110 DRETKEHVALKIIKN-----VDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYR----GHICIVFELL-GLSTFD  179 (415)
T ss_pred             ecCCCceehHHHHHH-----HHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhcc----CceEEEEecc-ChhHHH
Confidence            667789999999963     3678888999999999993  244    78888888654    4799999998 789999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC--------------------CcEEEee
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN--------------------GLVKIGC  135 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~--------------------~~~ki~d  135 (218)
                      ++....  ..++|...++.++.|++.++.|||+  .+++|.||||+|||+.+.                    ..++|+|
T Consensus       180 Flk~N~--y~~fpi~~ir~m~~QL~~sv~fLh~--~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vID  255 (415)
T KOG0671|consen  180 FLKENN--YIPFPIDHIRHMGYQLLESVAFLHD--LKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVID  255 (415)
T ss_pred             HhccCC--ccccchHHHHHHHHHHHHHHHHHHh--cceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEe
Confidence            998863  4779999999999999999999999  779999999999999532                    3589999


Q ss_pred             cCcccc-----ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          136 DTYTHT-----IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       136 fg~~~~-----~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||.++.     .+.+.|-.|.|||+  +-+++.          ++|+++|...|..-.+-|
T Consensus       256 FGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~E  316 (415)
T KOG0671|consen  256 FGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLE  316 (415)
T ss_pred             cCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHH
Confidence            999887     55688999999997  334433          799999999997665444

>KOG0603|consensus

Probab=99.89  E-value=2e-23  Score=178.02  Aligned_cols=158  Identities=18%  Similarity=0.264  Sum_probs=127.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..++...++|++...        .....+|+.++... .||||+.+.+++.+..    +.|+|||.+.|+-|.+.+...
T Consensus       343 ~~~t~~~~~vkii~~~--------~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~----~~~~v~e~l~g~ell~ri~~~  410 (612)
T KOG0603|consen  343 SSPTDQEPAVKIISKR--------ADDNQDEIPISLLVRDHPNIVKSHDVYEDGK----EIYLVMELLDGGELLRRIRSK  410 (612)
T ss_pred             ccccccchhheecccc--------ccccccccchhhhhcCCCcceeecceecCCc----eeeeeehhccccHHHHHHHhc
Confidence            5678888899988743        22345567666666 7999999999997754    699999999988888777654


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE-ecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI-QHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl-~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                      .     .....+..|+++|+.|+.|||+  +||+||||+|+|||+ +..++++|+|||.+..     .+.+-|..|.|||
T Consensus       411 ~-----~~~~e~~~w~~~lv~Av~~LH~--~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APE  483 (612)
T KOG0603|consen  411 P-----EFCSEASQWAAELVSAVDYLHE--QGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTPALTLQYVAPE  483 (612)
T ss_pred             c-----hhHHHHHHHHHHHHHHHHHHHh--cCeeecCCChhheeecCCCCcEEEEEechhhhCchhhcccchhhcccChh
Confidence            3     2237778899999999999999  889999999999999 5889999999999876     2457789999999


Q ss_pred             cCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          155 YGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ++.  .++.          +|+|++|..||......
T Consensus       484 vl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~  519 (612)
T KOG0603|consen  484 VLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG  519 (612)
T ss_pred             hhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch
Confidence            844  2222          79999999999766555

>KOG4278|consensus

Probab=99.88  E-value=6.6e-23  Score=174.79  Aligned_cols=158  Identities=22%  Similarity=0.287  Sum_probs=130.5

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||.++    .+ ......|+.|..+|+.+.|||+|+|+|+|....+    +|||+|||.+|+|.+||+.+.+  ..
T Consensus       293 lTvAVKtLK----ED-tMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpP----FYIiTEfM~yGNLLdYLRecnr--~e  361 (1157)
T KOG4278|consen  293 LTVAVKTLK----ED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP----FYIITEFMCYGNLLDYLRECNR--SE  361 (1157)
T ss_pred             eeeehhhhh----hc-chhHHHHHHHHHHHHhhcCccHHHHhhhhccCCC----eEEEEecccCccHHHHHHHhch--hh
Confidence            568888886    22 4567789999999999999999999999987654    8999999999999999999865  55


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccccccCC
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTYGR  157 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~~~  157 (218)
                      ++.-..+.++.||.+|+.||..  +++|||||...|.|++++..++++|||+++.         ....-...|.|||-..
T Consensus       362 v~avvLlyMAtQIsSaMeYLEk--knFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLA  439 (1157)
T KOG4278|consen  362 VPAVVLLYMATQISSAMEYLEK--KNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLA  439 (1157)
T ss_pred             cchhHHHHHHHHHHHHHHHHHH--hhhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCccCcccccCccccc
Confidence            8888888999999999999999  7799999999999999999999999999986         2223357899999522


Q ss_pred             --CCch----------hhhhhh-CCCCCCcchh
Q psy238          158 --PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       158 --~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                        .++.          ++||.| |..||.+...
T Consensus       440 yNtFSiKSDVWAFGVLLWEIATYGMsPYPGidl  472 (1157)
T KOG4278|consen  440 YNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDL  472 (1157)
T ss_pred             ccccccchhhHHHHHHHHHHHhcCCCCCCCccH
Confidence              2222          566654 7778876543

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.88  E-value=2.1e-21  Score=158.27  Aligned_cols=139  Identities=15%  Similarity=0.109  Sum_probs=109.3

Q ss_pred             HHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy238           32 VFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSP  111 (218)
Q Consensus        32 ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~  111 (218)
                      +...+..+.|++|+.+++++..........+++++++. .++.+++....    ..++..+..++.|++.||.|||+  .
T Consensus        73 ~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~i~~qi~~~l~~lH~--~  145 (294)
T PHA02882         73 LWKNIHNIDHLGIPKYYGCGSFKRCRMYYRFILLEKLV-ENTKEIFKRIK----CKNKKLIKNIMKDMLTTLEYIHE--H  145 (294)
T ss_pred             HHHHhccCCCCCCCcEEEeeeEecCCceEEEEEEehhc-cCHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHh--C
Confidence            34456677899999999876654433334578888874 57877776542    36788899999999999999999  7


Q ss_pred             CcccCCCCCCcEEEecCCcEEEeecCcccc---------------ccCCCcccccccccC--CCCch----------hhh
Q psy238          112 PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------------IENKKYLSATRQTYG--RPISG----------QYE  164 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------------~~~~~t~~y~aPE~~--~~~~~----------~~e  164 (218)
                      +|+||||||+|||++.++.++|+|||+++.               ....||+.|+|||+.  ..++.          +++
T Consensus       146 ~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~e  225 (294)
T PHA02882        146 GISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLK  225 (294)
T ss_pred             CeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            799999999999999999999999999753               124689999999973  22222          799


Q ss_pred             hhhCCCCCCcchh
Q psy238          165 IVTKTNNVTEKKK  177 (218)
Q Consensus       165 i~tg~~p~~~~~~  177 (218)
                      +++|..||.+...
T Consensus       226 l~~g~~P~~~~~~  238 (294)
T PHA02882        226 WAGIKLPWKGFGH  238 (294)
T ss_pred             HHhCCCCCCcccc
Confidence            9999999987643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=2.4e-22  Score=187.38  Aligned_cols=152  Identities=21%  Similarity=0.323  Sum_probs=120.8

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||.+.....        ....|+.+++.++|||||+++++|.+..    ..|+||||+++++|.+++..   
T Consensus       712 ~~~~~~vavK~~~~~~~--------~~~~~~~~l~~l~HpnIv~~~~~~~~~~----~~~lv~Ey~~~g~L~~~l~~---  776 (968)
T PLN00113        712 IKNGMQFVVKEINDVNS--------IPSSEIADMGKLQHPNIVKLIGLCRSEK----GAYLIHEYIEGKNLSEVLRN---  776 (968)
T ss_pred             CCCCcEEEEEEccCCcc--------ccHHHHHHHhhCCCCCcceEEEEEEcCC----CCEEEEeCCCCCcHHHHHhc---
Confidence            46789999998863211        1123578899999999999999997754    47999999999999999952   


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccCC
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYGR  157 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~~  157 (218)
                          +++..+..++.|++.||.|||+ +..+|+||||+|+||+++.++.+++. ++....    ....+++.|+|||+..
T Consensus       777 ----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~~  851 (968)
T PLN00113        777 ----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISSAYVAPETRE  851 (968)
T ss_pred             ----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCCCccccccccCccccc
Confidence                7889999999999999999994 12679999999999999988877765 444332    3456789999999733


Q ss_pred             --CCch----------hhhhhhCCCCCCc
Q psy238          158 --PISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       158 --~~~~----------~~ei~tg~~p~~~  174 (218)
                        .++.          +|||+||+.||+.
T Consensus       852 ~~~~~~~sDv~S~Gvvl~el~tg~~p~~~  880 (968)
T PLN00113        852 TKDITEKSDIYGFGLILIELLTGKSPADA  880 (968)
T ss_pred             CCCCCcccchhhHHHHHHHHHhCCCCCCc
Confidence              2222          7999999999954

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.88  E-value=5.8e-22  Score=158.27  Aligned_cols=165  Identities=22%  Similarity=0.263  Sum_probs=127.2

Q ss_pred             CCcEEEEEEeeccccc-ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERK-NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~-~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      ++..+++|++...... ........+..|+.++..++||||+++++++.+..    ..++||||+++++|.+++......
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~   99 (260)
T cd08222          24 AVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERD----AFCIITEYCEGRDLDCKLEELKHT   99 (260)
T ss_pred             CCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC----ceEEEEEeCCCCCHHHHHHHHhhc
Confidence            3445566665532111 11233445677899999999999999999886643    589999999999999998765444


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQTY  155 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE~  155 (218)
                      ...+++..++.++.|++.||.|||+  .+++|+||+|+||+++. +.++|+|||++..        ....++..|+|||.
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~lH~--~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~  176 (260)
T cd08222         100 GKTLSENQVCEWFIQLLLGVHYMHQ--RRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEA  176 (260)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHH--cCccccCCChhheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCHHH
Confidence            4569999999999999999999999  77999999999999975 5699999998764        24557888999996


Q ss_pred             C--CCCch----------hhhhhhCCCCCCcch
Q psy238          156 G--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      .  ..++.          ++++++|..||....
T Consensus       177 ~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~  209 (260)
T cd08222         177 LKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN  209 (260)
T ss_pred             HccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc
Confidence            2  22221          688999999997543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0665|consensus

Probab=99.88  E-value=1.4e-23  Score=166.21  Aligned_cols=165  Identities=19%  Similarity=0.176  Sum_probs=135.5

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHH
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      .|..+++.||+|.+... ..+ .....+..+|..++..+.|+||+.++.+|.-...  ....+|+|||+|. ++|..++.
T Consensus        36 ~D~v~~~~v~ikk~~~p-f~n-~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~  112 (369)
T KOG0665|consen   36 FDQVLGRPVAIKKLSRP-FQN-QTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVIL  112 (369)
T ss_pred             chhhccCceehhhhcCc-ccc-CccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHH
Confidence            47788999999988754 333 4556788999999999999999999999864221  2235899999995 79999998


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                      ..      ++-.++..++.|++.|+.|||+  .||+||||||+||++..++.++|.|||++..       +....|..|.
T Consensus       113 ~e------lDH~tis~i~yq~~~~ik~lhs--~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyr  184 (369)
T KOG0665|consen  113 ME------LDHETISYILYQMLCGIKHLHS--AGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYYR  184 (369)
T ss_pred             Hh------cchHHHHHHHHHHHHHHHHHHh--cceeecccCcccceecchhheeeccchhhcccCcccccCchhheeecc
Confidence            43      6778899999999999999999  7799999999999999999999999999876       4567788999


Q ss_pred             cccc--CCCCch----------hhhhhhCCCCCCcch
Q psy238          152 RQTY--GRPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       152 aPE~--~~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |||+  +..+..          +.||++|..-|.+..
T Consensus       185 apevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d  221 (369)
T KOG0665|consen  185 APEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKD  221 (369)
T ss_pred             CchheeccCCcccchhhhhhhHHHHHhhceEEecCch
Confidence            9996  443333          678888888887553

>KOG1027|consensus

Probab=99.88  E-value=5.7e-23  Score=179.46  Aligned_cols=160  Identities=20%  Similarity=0.164  Sum_probs=122.2

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      -.|++||||++-       ......+++||..|+.. .|||||++++.-.+    ..++|+..|.|. .+|.+++.....
T Consensus       531 ye~R~VAVKrll-------~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d----~qF~YIalELC~-~sL~dlie~~~~  598 (903)
T KOG1027|consen  531 YEGREVAVKRLL-------EEFFDFAQREIQLLQESDEHPNVIRYYCSEQD----RQFLYIALELCA-CSLQDLIESSGL  598 (903)
T ss_pred             eCCceehHHHHh-------hHhHHHHHHHHHHHHhccCCCceEEEEeeccC----CceEEEEehHhh-hhHHHHHhcccc
Confidence            468899999886       45666789999999888 79999999765433    357999999995 899999987411


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---C--CcEEEeecCcccc-----------ccCCC
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---N--GLVKIGCDTYTHT-----------IENKK  146 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~--~~~ki~dfg~~~~-----------~~~~~  146 (218)
                      ......-...+..+.|++.||.+||+++  ||||||||.||||+.   +  ..++|+|||+|..           .+..|
T Consensus       599 d~~~~~~i~~~~~l~q~~~GlaHLHsl~--iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sG  676 (903)
T KOG1027|consen  599 DVEMQSDIDPISVLSQIASGLAHLHSLK--IVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSG  676 (903)
T ss_pred             chhhcccccHHHHHHHHHHHHHHHHhcc--cccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCC
Confidence            1111111345778999999999999966  999999999999976   2  5789999998865           56789


Q ss_pred             cccccccccCC--CCch-----------hhhhhhCCCCCCcchh
Q psy238          147 YLSATRQTYGR--PISG-----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       147 t~~y~aPE~~~--~~~~-----------~~ei~tg~~p~~~~~~  177 (218)
                      |.+|+|||+..  ..+.           .|-+-.|..||.....
T Consensus       677 t~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~  720 (903)
T KOG1027|consen  677 TSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLE  720 (903)
T ss_pred             cccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHH
Confidence            99999999722  1111           3445556899975543

>KOG0596|consensus

Probab=99.88  E-value=2.1e-22  Score=169.37  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=127.4

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ...||+|.+...  .........+.+||..|.++ .|.+||+|+++-..    .+++|||||+= ..+|..+|...... 
T Consensus       385 ~~iyalkkv~~~--~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~----d~~lYmvmE~G-d~DL~kiL~k~~~~-  456 (677)
T KOG0596|consen  385 KQIYALKKVVLL--EADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVT----DGYLYMVMECG-DIDLNKILKKKKSI-  456 (677)
T ss_pred             CcchhhhHHHHh--hcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeecc----CceEEEEeecc-cccHHHHHHhccCC-
Confidence            456788877654  33367788999999999999 68999999988655    34799999986 57999999987642 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQT  154 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE  154 (218)
                        .+.-.++.+..||+.|+.++|.  .||||.||||.|+|+- .|.+||+|||++..          ..-+||+.||+||
T Consensus       457 --~~~~~lk~ywkqML~aV~~IH~--~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPE  531 (677)
T KOG0596|consen  457 --DPDWFLKFYWKQMLLAVKTIHQ--HGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPE  531 (677)
T ss_pred             --CchHHHHHHHHHHHHHHHHHHH--hceeecCCCcccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHH
Confidence              4434788899999999999999  7899999999999984 58999999999865          5679999999999


Q ss_pred             cCCC--C---------------------chhhhhhhCCCCCCcc
Q psy238          155 YGRP--I---------------------SGQYEIVTKTNNVTEK  175 (218)
Q Consensus       155 ~~~~--~---------------------~~~~ei~tg~~p~~~~  175 (218)
                      -...  .                     +.+|.|+-|+.||...
T Consensus       532 Al~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~  575 (677)
T KOG0596|consen  532 ALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQI  575 (677)
T ss_pred             HHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHH
Confidence            4110  0                     1179999999999744

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.88  E-value=1.2e-21  Score=153.56  Aligned_cols=160  Identities=26%  Similarity=0.355  Sum_probs=133.1

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||+|++......   .....+.+|+.+++.++|+||+++++++....    ..+++++++++++|.+++.... 
T Consensus        11 ~~~~~~~~~k~~~~~~~~---~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~----~~~l~~e~~~~~~L~~~~~~~~-   82 (244)
T smart00220       11 KKTGKLVAIKVIKKEKIK---KKRERILREISILKKLKHPNIVRLYDVFEDED----KLYLVMEYCDGGDLFDLLKKRG-   82 (244)
T ss_pred             CCCCcEEEEEEecccccc---cHHHHHHHHHHHHHhCCCCcHHHHHhheeeCC----EEEEEEeCCCCCCHHHHHHhcc-
Confidence            347899999999854222   11578889999999999999999999987643    5899999998889999997653 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQTY  155 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE~  155 (218)
                         .++...++.++.+++.++.+||+  .+++|+||+|.||+++.++.++|+|||.+..       ....++..|++||.
T Consensus        83 ---~~~~~~~~~~~~~l~~~l~~lh~--~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~  157 (244)
T smart00220       83 ---RLSEDEARFYARQILSALEYLHS--NGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEV  157 (244)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHH--cCeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHH
Confidence               28899999999999999999999  7799999999999999999999999998775       34567889999996


Q ss_pred             CC--CCch----------hhhhhhCCCCCCcc
Q psy238          156 GR--PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       156 ~~--~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ..  ..+.          ++++++|..||...
T Consensus       158 ~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~  189 (244)
T smart00220      158 LLGKGYGKAVDVWSLGVILYELLTGKPPFPGD  189 (244)
T ss_pred             HccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            32  2222          68899999999763

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0664|consensus

Probab=99.87  E-value=4.6e-24  Score=166.41  Aligned_cols=158  Identities=18%  Similarity=0.256  Sum_probs=125.0

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCC-CCeEEEEEeccCCCCHHHHHHh
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND-KPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      .|..+|+.||+|.+..-  ........++.+|+.+|..+.|.|++..+++..-...+ ...+|+++|.|. .+|..+|-.
T Consensus        73 TDPRdgrrvalkK~pnv--fq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TELmQ-SDLHKIIVS  149 (449)
T KOG0664|consen   73 TDPRSGKRVALKKMPNV--FQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELMQ-SDLHKIIVS  149 (449)
T ss_pred             cCCCCccchhHhhcchH--HHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHHHH-hhhhheecc
Confidence            37789999999987632  33345667899999999999999999988776543321 123678889885 688887764


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSA  150 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y  150 (218)
                      .    .+++.+.+.-+++||+.||.|||+  .+|+||||||.|+|++.+..++|||||+++.         .....|-.|
T Consensus       150 P----Q~Ls~DHvKVFlYQILRGLKYLHs--A~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYY  223 (449)
T KOG0664|consen  150 P----QALTPDHVKVFVYQILRGLKYLHT--ANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYY  223 (449)
T ss_pred             C----CCCCcchhhhhHHHHHhhhHHHhh--cchhhccCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHh
Confidence            3    569999999999999999999999  6699999999999999999999999999986         445668899


Q ss_pred             ccccc---CCCCchhhhhhh
Q psy238          151 TRQTY---GRPISGQYEIVT  167 (218)
Q Consensus       151 ~aPE~---~~~~~~~~ei~t  167 (218)
                      .|||+   ...++.+.||||
T Consensus       224 RAPEiLMGaRhYs~AvDiWS  243 (449)
T KOG0664|consen  224 RAPELLMGARRYTGAVDIWS  243 (449)
T ss_pred             ccHHHhhcchhhcCccceeh
Confidence            99997   224455444443

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.85  E-value=6.6e-21  Score=158.58  Aligned_cols=132  Identities=11%  Similarity=-0.022  Sum_probs=99.9

Q ss_pred             CCcEEEEEEeecccc-cccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSER-KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~-~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      +|..||||.+..... .........+.+|+.+|..++|+|++..+..+       +..|+||||++|++|.. +..    
T Consensus        43 ~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~-------~~~~LVmE~~~G~~L~~-~~~----  110 (365)
T PRK09188         43 PGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT-------GKDGLVRGWTEGVPLHL-ARP----  110 (365)
T ss_pred             CCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc-------CCcEEEEEccCCCCHHH-hCc----
Confidence            677889998752211 01234566789999999999999998633222       13799999999999962 210    


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCC-CCCcEEEecCCcEEEeecCcccc----------------ccCCC
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNL-TCDTIFIQHNGLVKIGCDTYTHT----------------IENKK  146 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dl-kp~NiLl~~~~~~ki~dfg~~~~----------------~~~~~  146 (218)
                         ..   ...++.|++.||.|||+  +||+|||| ||+|||++.++.++|+|||+++.                ....+
T Consensus       111 ---~~---~~~~~~~i~~aL~~lH~--~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~  182 (365)
T PRK09188        111 ---HG---DPAWFRSAHRALRDLHR--AGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLK  182 (365)
T ss_pred             ---cc---hHHHHHHHHHHHHHHHH--CCCeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhc
Confidence               11   14678899999999999  77999999 99999999999999999999874                23455


Q ss_pred             cccccccccC
Q psy238          147 YLSATRQTYG  156 (218)
Q Consensus       147 t~~y~aPE~~  156 (218)
                      ++.|+|||+.
T Consensus       183 ~~~~~~pe~~  192 (365)
T PRK09188        183 HKRTYAPDAL  192 (365)
T ss_pred             cCccCCcccC
Confidence            6778899973

>KOG0668|consensus

Probab=99.85  E-value=2.7e-21  Score=147.45  Aligned_cols=159  Identities=16%  Similarity=0.183  Sum_probs=125.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+.+.++||+++       +.....+.+|+.||+.+. ||||+.|+++..++.  +....+|+|++.+.+...+..  
T Consensus        59 ~~~~~eK~ViKiLK-------PVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~--SktpaLiFE~v~n~Dfk~ly~--  127 (338)
T KOG0668|consen   59 NITNNEKCVIKILK-------PVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPE--SKTPSLIFEYVNNTDFKQLYP--  127 (338)
T ss_pred             ccCCCceEEEeeec-------hHHHHHHHHHHHHHHhccCCCCeeehhhhhcCcc--ccCchhHhhhhccccHHHHhh--
Confidence            44677889999998       567778999999999995 999999999988754  345679999998877766553  


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc-------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                           .++...+..++.+++.||.||||  .||+|||+||.|++||.. -.++|+|+|++..       .....+..|--
T Consensus       128 -----tl~d~dIryY~~elLkALdyCHS--~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKG  200 (338)
T KOG0668|consen  128 -----TLTDYDIRYYIYELLKALDYCHS--MGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKG  200 (338)
T ss_pred             -----hhchhhHHHHHHHHHHHHhHHHh--cCcccccCCcceeeechhhceeeeeecchHhhcCCCceeeeeeehhhcCC
Confidence                 27778899999999999999999  779999999999999875 6799999999976       33455666778


Q ss_pred             cccCC---CCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYGR---PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~---~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+.-   .++.          +..|+-.+.||-...+.
T Consensus       201 PELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN  239 (338)
T KOG0668|consen  201 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDN  239 (338)
T ss_pred             chheeechhccccHHHHHHHHHHHHHHhccCcccCCCCC
Confidence            99632   2222          45566677888654443

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.85  E-value=3.6e-20  Score=144.00  Aligned_cols=159  Identities=26%  Similarity=0.343  Sum_probs=131.0

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..+|+|.+......   .....+.+|+..+..++|+|++++++++....    ..+++++++++++|.+++..... 
T Consensus        22 ~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~~~~~~~-   93 (225)
T smart00221       22 GTGELVAVKVLKKEKTE---KQREEFLREIRILKKLKHPNIVKLYGVFEDPE----PLYLVMEYCEGGDLFDYLRKKGG-   93 (225)
T ss_pred             CCCcEEEEEeeccccch---HHHHHHHHHHHHHHhCCCCChhhheeeeecCC----ceEEEEeccCCCCHHHHHHhccc-
Confidence            35789999999853211   25678889999999999999999999886643    58999999998899999986532 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc---------cCCCcccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI---------ENKKYLSATRQT  154 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~---------~~~~t~~y~aPE  154 (218)
                        .+++..++.++.+++.+|.+||+  .+++|+||+|.||+++.++.++|+|||.+...         ...++..|++||
T Consensus        94 --~~~~~~~~~~~~~l~~~l~~lh~--~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe  169 (225)
T smart00221       94 --KLSEEEARFYLRQILEALEYLHS--LGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPE  169 (225)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHh
Confidence              17889999999999999999999  67999999999999999999999999987652         235677899999


Q ss_pred             cC---CCCch----------hhhhhhCCCCCCc
Q psy238          155 YG---RPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       155 ~~---~~~~~----------~~ei~tg~~p~~~  174 (218)
                      ..   .+++.          ++++++|+.||.+
T Consensus       170 ~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      170 VLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             HhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            75   12211          6999999999966

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1290|consensus

Probab=99.85  E-value=5.4e-21  Score=158.89  Aligned_cols=117  Identities=26%  Similarity=0.444  Sum_probs=105.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-----CC---cccceeeeeecCCCCCCeEEEEEeccCCCCH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-----HP---NIVKFHRYWTDTHNDKPRVIFITEYMSSGSL   73 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-----hp---~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL   73 (218)
                      |+++.+.||+|+++     +.....+..+.||.+|++++     |+   .||+|++.|...++++.|+|||||++ |.+|
T Consensus        99 Dtq~~r~VAlKVvK-----SAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnL  172 (590)
T KOG1290|consen   99 DTQNKRYVALKVVK-----SAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNL  172 (590)
T ss_pred             eccCCeEEEEEEEe-----hhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhh-hhHH
Confidence            78889999999996     33778899999999999984     33   39999999999999999999999999 7899


Q ss_pred             HHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecC
Q psy238           74 KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHN  128 (218)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~  128 (218)
                      ..+|.....  ..+|...+..|++||+.||.|||+ |+  |||.||||+|||+..+
T Consensus       173 LklI~~s~Y--rGlpl~~VK~I~~qvL~GLdYLH~ecg--IIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  173 LKLIKYSNY--RGLPLSCVKEICRQVLTGLDYLHRECG--IIHTDLKPENVLLCST  224 (590)
T ss_pred             HHHHHHhCC--CCCcHHHHHHHHHHHHHHHHHHHHhcC--ccccCCCcceeeeecc
Confidence            999998854  669999999999999999999999 87  9999999999998554

>KOG0199|consensus

Probab=99.85  E-value=2.3e-21  Score=167.09  Aligned_cols=162  Identities=19%  Similarity=0.223  Sum_probs=131.4

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      .||||.+....   -......|++|+.+|..|+|||+++|||+..+..     +.||||+++.|||.+.|+....  ..|
T Consensus       140 ~VAVKclr~d~---l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp-----~mMV~ELaplGSLldrLrka~~--~~l  209 (1039)
T KOG0199|consen  140 NVAVKCLRDDS---LNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQP-----AMMVFELAPLGSLLDRLRKAKK--AIL  209 (1039)
T ss_pred             eEEEEeccCCc---cchhHHHHHHHHHHHHhccCcceeEEeeeeccch-----hhHHhhhcccchHHHHHhhccc--cce
Confidence            59999998431   1237789999999999999999999999998743     7899999999999999998332  568


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccccccc-
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSATRQTY-  155 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~aPE~-  155 (218)
                      .......|+.||+.|+.||.+  +++|||||-..|+|+...-.+||+|||+.+.           ....-.+.|+|||. 
T Consensus       210 lv~~Lcdya~QiA~aM~YLes--krlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsL  287 (1039)
T KOG0199|consen  210 LVSRLCDYAMQIAKAMQYLES--KRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESL  287 (1039)
T ss_pred             eHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHh
Confidence            889999999999999999999  8899999999999999999999999999887           22334678999995 


Q ss_pred             -CCCCch----------hhhhhh-CCCCCCcchhhhhH
Q psy238          156 -GRPISG----------QYEIVT-KTNNVTEKKKEKEE  181 (218)
Q Consensus       156 -~~~~~~----------~~ei~t-g~~p~~~~~~ee~~  181 (218)
                       ...|+.          ++||+| |..||.+..--...
T Consensus       288 rh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL  325 (1039)
T KOG0199|consen  288 RHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQIL  325 (1039)
T ss_pred             ccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHH
Confidence             223333          677776 55677665544433

>KOG0576|consensus

Probab=99.83  E-value=8.3e-22  Score=168.82  Aligned_cols=140  Identities=23%  Similarity=0.258  Sum_probs=123.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|...|+|+++..-.    .....+++||-++...+|||||.|++.|...+    .+|++||||.||+|.+.-+-. 
T Consensus        36 d~~s~elaavkvVkLep~----dd~~~iqqei~~~~dc~h~nivay~gsylr~d----klwicMEycgggslQdiy~~T-  106 (829)
T KOG0576|consen   36 DKRSGELAAVKVVKLEPG----DDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRD----KLWICMEYCGGGSLQDIYHVT-  106 (829)
T ss_pred             ccccCchhhheeeeccCC----ccccccccceeeeecCCCcChHHHHhhhhhhc----CcEEEEEecCCCcccceeeec-
Confidence            678999999999996532    33456788999999999999999999987654    589999999999999987765 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         +++++.++-..++..+.||.|||+  .+-+|||||=.|||+.+.|.++++|||.+..        ....||+.||||
T Consensus       107 ---gplselqiayvcRetl~gl~ylhs--~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGtpywmap  181 (829)
T KOG0576|consen  107 ---GPLSELQIAYVCRETLQGLKYLHS--QGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAP  181 (829)
T ss_pred             ---ccchhHHHHHHHhhhhccchhhhc--CCcccccccccceeecccCceeecccCchhhhhhhhhhhhcccCCccccch
Confidence               459999999999999999999999  6699999999999999999999999998765        678999999999


Q ss_pred             cc
Q psy238          154 TY  155 (218)
Q Consensus       154 E~  155 (218)
                      |+
T Consensus       182 Ev  183 (829)
T KOG0576|consen  182 EV  183 (829)
T ss_pred             hH
Confidence            97

>KOG0200|consensus

Probab=99.82  E-value=1e-19  Score=161.63  Aligned_cols=162  Identities=20%  Similarity=0.278  Sum_probs=130.1

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc---
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK---   81 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---   81 (218)
                      ...||||.+...  .+ ......+..|+.+|..+ .||||+.++|++...+    .+++|+||+..|+|.++++..+   
T Consensus       328 ~~~VaVK~~k~~--~~-~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~----~~~~v~Ey~~~G~L~~~Lr~~r~~~  400 (609)
T KOG0200|consen  328 YVTVAVKMLKEN--AS-SSEKKDLMSELNVLKELGKHPNIVNLLGACTQDG----PLYVIVEYAEHGDLLEFLRKKRVTE  400 (609)
T ss_pred             eEEEEEEecccc--cC-cHHHHHHHHHHHHHHHhcCCcchhhheeeeccCC----ceEEEEEeccCCcHHHHHHhccccc
Confidence            467999999843  22 36778899999999999 6999999999998743    5899999999999999999876   


Q ss_pred             c---c----C--CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------cc
Q psy238           82 R---N----V--KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IE  143 (218)
Q Consensus        82 ~---~----~--~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~  143 (218)
                      .   +    .  ..++....+.++.||+.|++||++  .++|||||..+|||+..+..++|+|||+++.         ..
T Consensus       401 ~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~--~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~  478 (609)
T KOG0200|consen  401 SIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLAS--VPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKS  478 (609)
T ss_pred             cccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhh--CCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecC
Confidence            0   0    0  138889999999999999999999  7799999999999999999999999999984         11


Q ss_pred             CC--CcccccccccCC--CCch----------hhhhhh-CCCCCCcch
Q psy238          144 NK--KYLSATRQTYGR--PISG----------QYEIVT-KTNNVTEKK  176 (218)
Q Consensus       144 ~~--~t~~y~aPE~~~--~~~~----------~~ei~t-g~~p~~~~~  176 (218)
                      ..  -...|||||...  .++.          ++||+| |..||.+..
T Consensus       479 ~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~  526 (609)
T KOG0200|consen  479 SAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP  526 (609)
T ss_pred             CCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC
Confidence            22  234599999633  2222          688776 667777643

>KOG1345|consensus

Probab=99.82  E-value=1.8e-20  Score=146.12  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=121.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+...+|+|.++..     ......|.+|+.---.| .|.||+.-|++.....   +.+++++||++.|+|.+-+...
T Consensus        45 Hr~s~t~ivlKavp~p-----~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~---d~YvF~qE~aP~gdL~snv~~~  116 (378)
T KOG1345|consen   45 HRQSKTRIVLKAVPRP-----QTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTS---DAYVFVQEFAPRGDLRSNVEAA  116 (378)
T ss_pred             ccCCceEEEeeccCcc-----hhhHHHHHHHhccceeeccchhhhHHHHHHhhcC---ceEEEeeccCccchhhhhcCcc
Confidence            3567788999998743     34556788888765555 6899999877644332   2678999999999999887653


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe--cCCcEEEeecCccccc-----cCCCccccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ--HNGLVKIGCDTYTHTI-----ENKKYLSATRQ  153 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~--~~~~~ki~dfg~~~~~-----~~~~t~~y~aP  153 (218)
                           .+.+.....++.|+++||.|||+  .++||||||.+||||.  +...++|||||.++..     ....+..|.+|
T Consensus       117 -----GigE~~~K~v~~ql~SAi~fMHs--knlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~p  189 (378)
T KOG1345|consen  117 -----GIGEANTKKVFAQLLSAIEFMHS--KNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAP  189 (378)
T ss_pred             -----cccHHHHHHHHHHHHHHHHHhhc--cchhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCCc
Confidence                 38889999999999999999999  6799999999999994  3468999999998762     23446788899


Q ss_pred             ccCC----------CCch-------hhhhhhCCCCCC
Q psy238          154 TYGR----------PISG-------QYEIVTKTNNVT  173 (218)
Q Consensus       154 E~~~----------~~~~-------~~ei~tg~~p~~  173 (218)
                      |+..          +.+.       .|-++||..||.
T Consensus       190 e~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQ  226 (378)
T KOG1345|consen  190 ELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQ  226 (378)
T ss_pred             HHHhhccccceEecccccchheeeeeeeeecCCCcch
Confidence            8622          1111       577899999996

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.82  E-value=8.6e-20  Score=139.81  Aligned_cols=124  Identities=13%  Similarity=0.094  Sum_probs=91.5

Q ss_pred             CCcEEEEEEeecccccccH----------------------HHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEE
Q psy238            5 EGVEVVWNEVQFSERKNFK----------------------AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVI   62 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~----------------------~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~   62 (218)
                      +|+.||||++.........                      ........|+.++..+.++++.....+...      ..+
T Consensus        20 ~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~~p~~~~~~------~~~   93 (190)
T cd05147          20 NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIPCPEPILLK------SHV   93 (190)
T ss_pred             CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCcEEEec------CCE
Confidence            7999999999853211000                      011233459999999988877443332211      138


Q ss_pred             EEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           63 FITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYL-HSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        63 lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~l-H~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      +||||++|+++...+...    .+++...+..++.|++.+|.++ |+  .||+||||||+|||++ ++.++|+|||++..
T Consensus        94 iVmE~i~g~~l~~~~~~~----~~~~~~~~~~i~~qi~~~L~~l~H~--~giiHrDlkP~NIli~-~~~v~LiDFG~a~~  166 (190)
T cd05147          94 LVMEFIGDDGWAAPRLKD----APLSESKARELYLQVIQIMRILYQD--CRLVHADLSEYNLLYH-DGKLYIIDVSQSVE  166 (190)
T ss_pred             EEEEEeCCCCCcchhhhc----CCCCHHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHEEEE-CCcEEEEEcccccc
Confidence            999999887766543322    3488999999999999999999 68  6699999999999998 57899999999875

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.82  E-value=7.5e-19  Score=134.34  Aligned_cols=141  Identities=29%  Similarity=0.386  Sum_probs=119.6

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..+++|++.....   ......+.+|+..+..+.|++|+++++++....    ..+++|+++++++|.+++....  
T Consensus        16 ~~~~~~~~K~~~~~~~---~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~----~~~~~~e~~~~~~l~~~~~~~~--   86 (215)
T cd00180          16 KTGKKVAIKIIKKEDS---SSLLEELLREIEILKKLNHPNIVKLYGVFEDEN----HLYLVMEYCEGGSLKDLLKENE--   86 (215)
T ss_pred             CCCcEEEEEEeccccc---hhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCC----eEEEEEecCCCCcHHHHHHhcc--
Confidence            3589999999985321   114567899999999999999999999987653    5899999998899999998652  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-CCcEEEeecCccccc--------cCCCcccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHTI--------ENKKYLSATRQT  154 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~~--------~~~~t~~y~aPE  154 (218)
                       ..++...++.++.+++.+|.+||+  .+++|+||+|.||+++. ++.++|+|||.+...        ...+...|++||
T Consensus        87 -~~~~~~~~~~~~~~l~~~l~~lh~--~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe  163 (215)
T cd00180          87 -GKLSEDEILRILLQILEGLEYLHS--NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPE  163 (215)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChh
Confidence             248899999999999999999999  77999999999999999 899999999988752        245788899999


Q ss_pred             cC
Q psy238          155 YG  156 (218)
Q Consensus       155 ~~  156 (218)
                      ..
T Consensus       164 ~~  165 (215)
T cd00180         164 VL  165 (215)
T ss_pred             Hh
Confidence            73

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1025|consensus

Probab=99.81  E-value=4.9e-20  Score=161.28  Aligned_cols=161  Identities=16%  Similarity=0.238  Sum_probs=131.6

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      .+||+|++..   .........++.|.-+|..+.|||+++|++++..+.     +-||++|+++|+|.++++.+++   .
T Consensus       726 ipVaiKvl~~---~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-----~qlvtq~mP~G~LlDyvr~hr~---~  794 (1177)
T KOG1025|consen  726 IPVAIKVLIE---FTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-----LQLVTQLMPLGCLLDYVREHRD---N  794 (1177)
T ss_pred             ceeEEEEeec---cCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-----HHHHHHhcccchHHHHHHHhhc---c
Confidence            5799999874   333556778999999999999999999999998754     7899999999999999999764   4


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc-
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY-  155 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~-  155 (218)
                      +.....+.|..||+.|+.|||.  ++++||||-.+|+||..-..++|.|||++..          ....-.+.|||-|. 
T Consensus       795 igsq~lLnw~~QIAkgM~YLe~--qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i  872 (1177)
T KOG1025|consen  795 IGSQDLLNWCYQIAKGMKYLEE--QRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESI  872 (1177)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh--cchhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHh
Confidence            8889999999999999999999  8899999999999999999999999999876          12233455666663 


Q ss_pred             -CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          156 -GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       156 -~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                       ...++.          .+|++| |..|+.+..-+|.
T Consensus       873 ~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI  909 (1177)
T KOG1025|consen  873 RIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEI  909 (1177)
T ss_pred             hccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHh
Confidence             223333          456554 8899988877664

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.80  E-value=5.4e-19  Score=152.94  Aligned_cols=150  Identities=17%  Similarity=0.157  Sum_probs=106.1

Q ss_pred             CCCcEEEEEEeecccccc---c-------HHHHHHHHHHHHHhhcCCCCc-----ccceeeeeecCC----CCCCeEEEE
Q psy238            4 EEGVEVVWNEVQFSERKN---F-------KAQEEKIQQVFENLTQLEHPN-----IVKFHRYWTDTH----NDKPRVIFI   64 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~---~-------~~~~~~~~~ei~~l~~l~hp~-----iv~l~~~~~~~~----~~~~~~~lv   64 (218)
                      ..++.||||.+.......   +       ....+....|+.++..++|.+     ++.++++|....    ...+..++|
T Consensus       184 ~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV  263 (507)
T PLN03224        184 QKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLV  263 (507)
T ss_pred             ccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEE
Confidence            456789999987421100   0       001122334666677775554     466777765421    123458999


Q ss_pred             EeccCCCCHHHHHHhhcccC--------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEE
Q psy238           65 TEYMSSGSLKQFLKRTKRNV--------------------KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIF  124 (218)
Q Consensus        65 ~e~~~~~sL~~~l~~~~~~~--------------------~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiL  124 (218)
                      |+|+++++|.+++.......                    ..+++..++.++.|++.||.|||+  .+|+||||+|+|||
T Consensus       264 ~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~--~~ivHrDLKp~NIL  341 (507)
T PLN03224        264 WKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHR--IGIVHRDIKPENLL  341 (507)
T ss_pred             EEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCchHhEE
Confidence            99999999999987532110                    124567888999999999999999  77999999999999


Q ss_pred             EecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238          125 IQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus       125 l~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ++.++.++|+|||++..         ....+++.|+|||.
T Consensus       342 l~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~  381 (507)
T PLN03224        342 VTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEE  381 (507)
T ss_pred             ECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhh
Confidence            99999999999998854         11234789999996

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.80  E-value=6.8e-19  Score=134.89  Aligned_cols=125  Identities=14%  Similarity=0.136  Sum_probs=93.5

Q ss_pred             CCcEEEEEEeeccccccc----------------------HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEE
Q psy238            5 EGVEVVWNEVQFSERKNF----------------------KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVI   62 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~----------------------~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~   62 (218)
                      +|..||||++........                      ......+..|+..+..+.++++.....+...      ..+
T Consensus        20 ~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~------~~~   93 (190)
T cd05145          20 DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVPVPEPILLK------KNV   93 (190)
T ss_pred             CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEec------CCE
Confidence            799999999986421100                      0112334678999999999987554443322      138


Q ss_pred             EEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           63 FITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        63 lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      +||||++|+++...+...    .+++...+..++.|++.++.++|+ .+  |+||||+|+|||++ ++.++|+|||++..
T Consensus        94 lVmE~~~g~~~~~~~l~~----~~~~~~~~~~i~~~l~~~l~~lH~~~g--ivHrDlkP~NIll~-~~~~~liDFG~a~~  166 (190)
T cd05145          94 LVMEFIGDDGSPAPRLKD----VPLEEEEAEELYEQVVEQMRRLYQEAG--LVHGDLSEYNILYH-DGKPYIIDVSQAVE  166 (190)
T ss_pred             EEEEEecCCCchhhhhhh----ccCCHHHHHHHHHHHHHHHHHHHHhCC--EecCCCChhhEEEE-CCCEEEEEccccee
Confidence            999999877554432222    237788999999999999999998 66  99999999999999 89999999999875


Q ss_pred             c
Q psy238          142 I  142 (218)
Q Consensus       142 ~  142 (218)
                      .
T Consensus       167 ~  167 (190)
T cd05145         167 L  167 (190)
T ss_pred             c
Confidence            4

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10345 hypothetical protein; Provisional

Probab=99.80  E-value=9.4e-19  Score=135.65  Aligned_cols=122  Identities=16%  Similarity=0.194  Sum_probs=91.8

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-----CCCcccceeeeeecCCCCCCeEE-EEEec--cCCCCHH
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-----EHPNIVKFHRYWTDTHNDKPRVI-FITEY--MSSGSLK   74 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-----~hp~iv~l~~~~~~~~~~~~~~~-lv~e~--~~~~sL~   74 (218)
                      ..++.. +||++....    ......+.+|+.++..+     .||||+++++++.+... .+.++ +||||  +.+++|.
T Consensus        22 p~~~~k-~IKv~~~~~----~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g-~g~v~~~I~e~~G~~~~tL~   95 (210)
T PRK10345         22 PEDAQR-CIKIVYHRG----DGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCG-TGYVYDVIADFDGKPSITLT   95 (210)
T ss_pred             CCCcCe-EEEEEeccc----cchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCC-CeEEEEEEecCCCCcchhHH
Confidence            345555 688886421    22446789999999999     57999999999987532 23434 78999  5578999


Q ss_pred             HHHHhhcccCCCCCHHHHHHHHHHHHHHH-HHhhcCCCCcccCCCCCCcEEEec----CCcEEEeecCcc
Q psy238           75 QFLKRTKRNVKKLPLSAWKRWCSQILSAL-SYLHSCSPPIIHGNLTCDTIFIQH----NGLVKIGCDTYT  139 (218)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~qi~~~l-~~lH~~~~~iiH~dlkp~NiLl~~----~~~~ki~dfg~~  139 (218)
                      +++...     .+++.  ..++.|++.++ .|||+  ++|+||||||+|||++.    ++.++|+|++.+
T Consensus        96 ~~l~~~-----~~~e~--~~~~~~~L~~l~~yLh~--~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345         96 EFAEQC-----RYEED--VAQLRQLLKKLKRYLLD--NRIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             HHHHcc-----cccHh--HHHHHHHHHHHHHHHHH--CCEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            999653     25555  35678888888 89999  78999999999999974    348999995544

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.78  E-value=8.1e-19  Score=154.64  Aligned_cols=96  Identities=18%  Similarity=0.096  Sum_probs=76.6

Q ss_pred             CCeEEEEEeccCCCCHHHHHHhhccc----------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCC
Q psy238           58 KPRVIFITEYMSSGSLKQFLKRTKRN----------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCD  121 (218)
Q Consensus        58 ~~~~~lv~e~~~~~sL~~~l~~~~~~----------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~  121 (218)
                      ...+++||+|+.+++|.+++......                +.......+..++.||+.||.|||+  ++|+||||||+
T Consensus       207 ~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~--~gIiHRDLKP~  284 (566)
T PLN03225        207 EDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS--TGIVHRDVKPQ  284 (566)
T ss_pred             CCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH--CCEEeCcCCHH
Confidence            45689999999999999998754210                0011234466799999999999999  77999999999


Q ss_pred             cEEEec-CCcEEEeecCcccc---------ccCCCccccccccc
Q psy238          122 TIFIQH-NGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus       122 NiLl~~-~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      |||++. ++.++|+|||++..         ....+++.|+|||.
T Consensus       285 NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~  328 (566)
T PLN03225        285 NIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQ  328 (566)
T ss_pred             HEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHH
Confidence            999986 58999999999864         24567899999994

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.77  E-value=2.7e-19  Score=163.88  Aligned_cols=133  Identities=14%  Similarity=0.100  Sum_probs=99.4

Q ss_pred             hhcCCC-CcccceeeeeecCCC---CCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy238           36 LTQLEH-PNIVKFHRYWTDTHN---DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSP  111 (218)
Q Consensus        36 l~~l~h-p~iv~l~~~~~~~~~---~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~  111 (218)
                      ++.+.| +||+.++++|.....   ....++++||++ +++|.++|....   ..++...++.++.||+.||.|||+  +
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~al~~lH~--~   99 (793)
T PLN00181         26 SKSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPD---RSVDAFECFHVFRQIVEIVNAAHS--Q   99 (793)
T ss_pred             cchhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhccc---ccccHHHHHHHHHHHHHHHHHHHh--C
Confidence            445566 688888888743322   223577888988 579999997532   459999999999999999999999  7


Q ss_pred             CcccCCCCCCcEEEec-------------------CCcEEEeecCccccc------------------------cCCCcc
Q psy238          112 PIIHGNLTCDTIFIQH-------------------NGLVKIGCDTYTHTI------------------------ENKKYL  148 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~-------------------~~~~ki~dfg~~~~~------------------------~~~~t~  148 (218)
                      ||+||||||+||||+.                   ++.++++|||+++..                        ...+|+
T Consensus       100 gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  179 (793)
T PLN00181        100 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMS  179 (793)
T ss_pred             CeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCc
Confidence            7999999999999954                   455667777766421                        134788


Q ss_pred             ccccccc--CCCCch----------hhhhhhCCCCCCc
Q psy238          149 SATRQTY--GRPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       149 ~y~aPE~--~~~~~~----------~~ei~tg~~p~~~  174 (218)
                      +|+|||+  +..++.          +|||++|..|+..
T Consensus       180 ~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~  217 (793)
T PLN00181        180 WYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREE  217 (793)
T ss_pred             ceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhh
Confidence            8999997  333332          7999999888763

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.76  E-value=1.2e-17  Score=128.21  Aligned_cols=152  Identities=13%  Similarity=0.024  Sum_probs=107.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+..++.+.+..............+.+|+++|..+. +++|+.++++.        ..+++|+|+.|.+|...+..    
T Consensus        24 ~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~--------~~~lvmeyI~G~~L~~~~~~----   91 (218)
T PRK12274         24 GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWD--------GRHLDRSYLAGAAMYQRPPR----   91 (218)
T ss_pred             CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEc--------CEEEEEeeecCccHHhhhhh----
Confidence            456677776654322111222336789999999995 58899998762        26999999998888654321    


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCC-CCCcEEEecCCcEEEeecCccccccCC-----------------
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNL-TCDTIFIQHNGLVKIGCDTYTHTIENK-----------------  145 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dl-kp~NiLl~~~~~~ki~dfg~~~~~~~~-----------------  145 (218)
                            . ...++.|++.+|.++|+  .||+|||| +|.|||++.++.++|+|||++......                 
T Consensus        92 ------~-~~~~~~qi~~~L~~lH~--~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk  162 (218)
T PRK12274         92 ------G-DLAYFRAARRLLQQLHR--CGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLK  162 (218)
T ss_pred             ------h-hHHHHHHHHHHHHHHHH--CcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHH
Confidence                  1 13477899999999999  77999999 799999999999999999998752211                 


Q ss_pred             ----Cccccccccc---CC-----------CCchhhhhhhCCCCCCcchh
Q psy238          146 ----KYLSATRQTY---GR-----------PISGQYEIVTKTNNVTEKKK  177 (218)
Q Consensus       146 ----~t~~y~aPE~---~~-----------~~~~~~ei~tg~~p~~~~~~  177 (218)
                          .++.|++|+-   ..           ...+.|.++|++.+..+..+
T Consensus       163 ~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~~  212 (218)
T PRK12274        163 HKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDNE  212 (218)
T ss_pred             HHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccCC
Confidence                2555666652   11           11226888998888765443

>KOG1167|consensus

Probab=99.76  E-value=2.2e-18  Score=141.02  Aligned_cols=117  Identities=16%  Similarity=0.275  Sum_probs=101.4

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++.||+|.+-..      ....++.+|+++|..+ .+.||+.+.+++...+    .+++||+|+++....++...    
T Consensus        63 ~~~~valk~i~~t------s~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd----~v~ivlp~~~H~~f~~l~~~----  128 (418)
T KOG1167|consen   63 KRRYVALKAIYRT------SSPSRILNELEMLYRLGGSDNIIKLNGCFRNND----QVAIVLPYFEHDRFRDLYRS----  128 (418)
T ss_pred             ccceEeeeecccc------cCchHHHHHHHHHHHhccchhhhcchhhhccCC----eeEEEecccCccCHHHHHhc----
Confidence            5678999988752      3345689999999998 6899999999987654    59999999999899888864    


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTH  140 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~  140 (218)
                         ++...+..+++.++.||.++|.  .||||||+||.|+|.+.. +.-.|+|||++.
T Consensus       129 ---l~~~~i~~Yl~~ll~Al~~~h~--~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  129 ---LSLAEIRWYLRNLLKALAHLHK--NGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             ---CCHHHHHHHHHHHHHHhhhhhc--cCccccCCCccccccccccCCceEEechhHH
Confidence               7789999999999999999999  889999999999999865 788899999876

>KOG1163|consensus

Probab=99.74  E-value=1.8e-17  Score=127.48  Aligned_cols=161  Identities=14%  Similarity=0.113  Sum_probs=119.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC-CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH-PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h-p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      ...+|.+||||+-+..      .....+..|..+...+++ ++|..+..++....    +-.+||+.+ |.||.+++..+
T Consensus        36 ~i~~ge~VAiK~Es~~------a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~----ynvlVMdLL-GPsLEdLfnfC  104 (341)
T KOG1163|consen   36 SITSGEEVAIKLESSK------AKHPQLLYESKVYRILQGGVGIPHIRHYGTEKD----YNVLVMDLL-GPSLEDLFNFC  104 (341)
T ss_pred             eccCCceEEEEeeccc------CCCcchhHHHHHHHHhccCCCCchhhhhccccc----cceeeeecc-CccHHHHHHHH
Confidence            4568999999987632      222346677888888864 67777776665533    468999998 89999999877


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC---CcEEEeecCcccc---------------c
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN---GLVKIGCDTYTHT---------------I  142 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~---~~~ki~dfg~~~~---------------~  142 (218)
                      .+   .++..+++-++.|++.-++|+|.  +++|||||||+|+|+.-+   ..+.++|||++..               .
T Consensus       105 ~R---~ftmkTvLMLaDQml~RiEyvH~--r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r  179 (341)
T KOG1163|consen  105 SR---RFTMKTVLMLADQMLSRIEYVHL--RNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDR  179 (341)
T ss_pred             hh---hhhHHhHHHHHHHHHHHHHHHHh--hccccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCC
Confidence            63   48999999999999999999999  779999999999999754   6789999999865               3


Q ss_pred             cCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          143 ENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       143 ~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ...||..|.+-.-  +-.-+.          +.=..-|..||.+....
T Consensus       180 ~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~  227 (341)
T KOG1163|consen  180 NLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAA  227 (341)
T ss_pred             ccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchh
Confidence            4567777765442  111111          22235688899766543

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.73  E-value=4.5e-17  Score=127.19  Aligned_cols=121  Identities=9%  Similarity=0.162  Sum_probs=93.9

Q ss_pred             CCcEEEEEEeecccccccHHHHHH------HHHHHHHhhcCCCCcccceeeeeecCCCC----CCeEEEEEeccCCCCHH
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHND----KPRVIFITEYMSSGSLK   74 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~------~~~ei~~l~~l~hp~iv~l~~~~~~~~~~----~~~~~lv~e~~~~~sL~   74 (218)
                      ++..+|||++..... ........      +.+|+..+.++.||+|..+..++......    .+..++||||++|.+|.
T Consensus        53 ~~~~~iiKvf~~~~~-~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~  131 (232)
T PRK10359         53 DYGKYILKVFAPKVK-RTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELN  131 (232)
T ss_pred             CCCcEEEEEechhcC-chHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecccccccccCCeEEEEEEECCccHH
Confidence            466899999974322 22333233      57899999999999999998887654321    23579999999999998


Q ss_pred             HHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           75 QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ++..        ++.    ....+++.+|..||+  .|++|+|++|+||++++++ ++|+|||.+..
T Consensus       132 ~~~~--------~~~----~~~~~i~~~l~~lH~--~gi~H~Dikp~Nili~~~g-i~liDfg~~~~  183 (232)
T PRK10359        132 DMPE--------ISE----DVKAKIKASIESLHQ--HGMVSGDPHKGNFIVSKNG-LRIIDLSGKRC  183 (232)
T ss_pred             Hhhh--------ccH----HHHHHHHHHHHHHHH--cCCccCCCChHHEEEeCCC-EEEEECCCccc
Confidence            8732        333    245699999999999  7799999999999999999 99999997765

>KOG1164|consensus

Probab=99.72  E-value=1.3e-16  Score=131.83  Aligned_cols=158  Identities=13%  Similarity=0.040  Sum_probs=118.5

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCC----CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE----HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~----hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|+|.........    ...+..|+.++..+.    .+++..+++.+.   .....-|+||+.+ |.||.++..... 
T Consensus        45 ~~~a~K~e~~~~~~~----~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~---~~~~~~~iVM~l~-G~sL~dl~~~~~-  115 (322)
T KOG1164|consen   45 KEYAKKLEKKELGSK----PSVLKIEIQVLKKLEKKNGPSHFPKLLDHGR---STEDFNFIVMSLL-GPSLEDLRKRNP-  115 (322)
T ss_pred             eeEEEEEEEecccCC----CccchhHHHHHHHHhhhcCCCCCCEEEEecc---CCCceeEEEEecc-CccHHHHHHhCC-
Confidence            578888887432111    114666777777775    267888887774   1223579999998 899999887765 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-----CcEEEeecCccc--c--------------
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-----GLVKIGCDTYTH--T--------------  141 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-----~~~ki~dfg~~~--~--------------  141 (218)
                       ...++..++..++.|++.+|.+||+  .|++||||||.|++++..     ..+.|.|||+++  .              
T Consensus       116 -~~~fs~~T~l~ia~q~l~~l~~lH~--~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~  192 (322)
T KOG1164|consen  116 -PGRFSRKTVLRIAIQNLNALEDLHS--KGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRP  192 (322)
T ss_pred             -CCCcCHhHHHHHHHHHHHHHHHHHh--cCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCC
Confidence             3569999999999999999999999  669999999999999764     469999999998  2              


Q ss_pred             --ccCCCcccccccccCC--CC----------chhhhhhhCCCCCCcch
Q psy238          142 --IENKKYLSATRQTYGR--PI----------SGQYEIVTKTNNVTEKK  176 (218)
Q Consensus       142 --~~~~~t~~y~aPE~~~--~~----------~~~~ei~tg~~p~~~~~  176 (218)
                        ....||..|.++....  ..          ..+.++..|..||....
T Consensus       193 ~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~  241 (322)
T KOG1164|consen  193 QKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALE  241 (322)
T ss_pred             CccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCcccc
Confidence              1234888998888522  11          22688888999995444

>smart00090 RIO RIO-like kinase

Probab=99.70  E-value=8.7e-17  Score=127.22  Aligned_cols=125  Identities=16%  Similarity=0.129  Sum_probs=92.5

Q ss_pred             CCCCCcEEEEEEeecccccc------------------cH--HHHHHHHHHHHHhhcCCCC--cccceeeeeecCCCCCC
Q psy238            2 DTEEGVEVVWNEVQFSERKN------------------FK--AQEEKIQQVFENLTQLEHP--NIVKFHRYWTDTHNDKP   59 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~------------------~~--~~~~~~~~ei~~l~~l~hp--~iv~l~~~~~~~~~~~~   59 (218)
                      +..+|..||||++.......                  ..  .....+..|+.++..+.+.  .++.++.+   .     
T Consensus        50 ~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~i~~p~~~~~---~-----  121 (237)
T smart00090       50 FDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAGVPVPKPIAW---R-----  121 (237)
T ss_pred             cCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeEe---c-----
Confidence            45789999999998542110                  00  0123456899999999653  34444432   1     


Q ss_pred             eEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-cccCCCCCCcEEEecCCcEEEeecCc
Q psy238           60 RVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPP-IIHGNLTCDTIFIQHNGLVKIGCDTY  138 (218)
Q Consensus        60 ~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~-iiH~dlkp~NiLl~~~~~~ki~dfg~  138 (218)
                      ..++||||++|.+|..+....    ..+....+..++.|++.+|.+||+  .+ ++|+||+|+||+++ ++.++|+|||.
T Consensus       122 ~~~lV~E~~~g~~L~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~--~g~iiH~Dikp~NIli~-~~~i~LiDFg~  194 (237)
T smart00090      122 RNVLVMEFIGGDGLPAPRLKD----VEPEEEEEFELYDDILEEMRKLYK--EGELVHGDLSEYNILVH-DGKVVIIDVSQ  194 (237)
T ss_pred             CceEEEEEecCCccccccccc----CCcchHHHHHHHHHHHHHHHHHHh--cCCEEeCCCChhhEEEE-CCCEEEEEChh
Confidence            248999999887887654322    235666778999999999999999  88 99999999999999 88999999998


Q ss_pred             ccc
Q psy238          139 THT  141 (218)
Q Consensus       139 ~~~  141 (218)
                      +..
T Consensus       195 a~~  197 (237)
T smart00090      195 SVE  197 (237)
T ss_pred             hhc
Confidence            774

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.68  E-value=7.1e-16  Score=119.71  Aligned_cols=122  Identities=17%  Similarity=0.249  Sum_probs=96.3

Q ss_pred             CCcEEEEEEeecccccc----cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            5 EGVEVVWNEVQFSERKN----FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~----~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +|..|++|+........    .......+.+|+.++..+.|++|+....++.+..    ..++||+|++|++|.+++...
T Consensus        18 ~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~----~~~lv~e~~~G~~L~~~~~~~   93 (211)
T PRK14879         18 LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPE----NFIIVMEYIEGEPLKDLINSN   93 (211)
T ss_pred             CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCC----CCEEEEEEeCCcCHHHHHHhc
Confidence            67889999865322111    1122346788999999999998877766655433    368999999999999998642


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                             .. .+..++.+++.+|.++|+  .+++|+|++|.|||++ ++.++|+|||.+..
T Consensus        94 -------~~-~~~~i~~~i~~~l~~lH~--~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         94 -------GM-EELELSREIGRLVGKLHS--AGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             -------cH-HHHHHHHHHHHHHHHHHh--CCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence                   12 788899999999999999  7799999999999999 88999999998875

>KOG1165|consensus

Probab=99.67  E-value=3.8e-16  Score=125.12  Aligned_cols=159  Identities=11%  Similarity=0.126  Sum_probs=124.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      ++-+++.||||.-...      +..-.+..|....+.| ..++|..+|.+....    -+-.||+|++ |.||.++..-+
T Consensus        49 Nl~nne~VAIKfEPrk------S~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG----~~NiLVidLL-GPSLEDLFD~C  117 (449)
T KOG1165|consen   49 NLYNNEPVAIKFEPRK------SEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEG----KYNILVIDLL-GPSLEDLFDLC  117 (449)
T ss_pred             ccccCceEEEEecccc------CCcchHHHHHHHHHHHcCCCCCCceeeecccc----chhhhhhhhh-CcCHHHHHHHh
Confidence            5678999999987642      2334567788877777 569999998766442    3557999998 89999999887


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-----CcEEEeecCcccc--------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-----GLVKIGCDTYTHT--------------  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-----~~~ki~dfg~~~~--------------  141 (218)
                      ++   .|+..++.-++.|++.-+.|+|+  +.+|.|||||+|+||+..     ..+.|+|||++..              
T Consensus       118 gR---~FSvKTV~miA~Qmi~rie~vH~--k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE  192 (449)
T KOG1165|consen  118 GR---RFSVKTVAMIAKQMITRIEYVHE--KDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYRE  192 (449)
T ss_pred             cC---cccHHhHHHHHHHHHHHHHHHHh--cceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCcccc
Confidence            63   59999999999999999999999  669999999999999743     5788999999875              


Q ss_pred             -ccCCCcccccccc--cCCCCch----------hhhhhhCCCCCCcch
Q psy238          142 -IENKKYLSATRQT--YGRPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       142 -~~~~~t~~y~aPE--~~~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                       ....||..||+-.  +|..-+.          ..=.+-|..||.+-.
T Consensus       193 ~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLK  240 (449)
T KOG1165|consen  193 HKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK  240 (449)
T ss_pred             ccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcccccc
Confidence             4578899999865  3443333          233578999997653

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.66  E-value=1.5e-15  Score=120.33  Aligned_cols=126  Identities=15%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             CcEEEEEEeecccc------c---ccHHHHHHHHHHHHHhhcCCCCcc--cceeeeeecCCCCCCeEEEEEeccCC-CCH
Q psy238            6 GVEVVWNEVQFSER------K---NFKAQEEKIQQVFENLTQLEHPNI--VKFHRYWTDTHNDKPRVIFITEYMSS-GSL   73 (218)
Q Consensus         6 g~~vAvK~~~~~~~------~---~~~~~~~~~~~ei~~l~~l~hp~i--v~l~~~~~~~~~~~~~~~lv~e~~~~-~sL   73 (218)
                      |..+|||.+...+.      .   ........+.+|+.++..+.|++|  +..+++...........++||++++| .+|
T Consensus        55 ~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L  134 (239)
T PRK01723         55 GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDL  134 (239)
T ss_pred             CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCH
Confidence            67789998863221      0   011234567889999999988775  66666544322211234699999987 689


Q ss_pred             HHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc
Q psy238           74 KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI  142 (218)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~  142 (218)
                      .+++...     +++...    +.+++.+|.+||+  .||+|+||+|.|||++.++.++|+|||.+...
T Consensus       135 ~~~l~~~-----~l~~~~----~~~i~~~l~~lH~--~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        135 VALLQEA-----PLSEEQ----WQAIGQLIARFHD--AGVYHADLNAHNILLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             HHHHhcC-----CCCHHH----HHHHHHHHHHHHH--CCCCCCCCCchhEEEcCCCCEEEEECCCcccC
Confidence            9887542     355443    5789999999999  77999999999999999999999999988764

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.66  E-value=1.5e-15  Score=116.84  Aligned_cols=120  Identities=17%  Similarity=0.195  Sum_probs=91.2

Q ss_pred             CCCcEEEEEEeecccccc----cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            4 EEGVEVVWNEVQFSERKN----FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~----~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      .+|..|++|.........    .......+.+|+.++..+.|+++.....++....    ..++||||++|++|.+++..
T Consensus        15 ~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~----~~~lv~e~~~g~~l~~~~~~   90 (199)
T TIGR03724        15 FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPD----NKTIVMEYIEGKPLKDVIEE   90 (199)
T ss_pred             cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC----CCEEEEEEECCccHHHHHhh
Confidence            367889999865322111    1223466788999999998877554443433322    36899999999999998754


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..     .      .++.+++.+|.+||+  .+++|+|++|.||+++ ++.++++|||.+..
T Consensus        91 ~~-----~------~~~~~i~~~l~~lH~--~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        91 GN-----D------ELLREIGRLVGKLHK--AGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             cH-----H------HHHHHHHHHHHHHHH--CCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            21     1      788999999999999  7799999999999999 89999999998775

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.63  E-value=9.7e-15  Score=118.06  Aligned_cols=163  Identities=26%  Similarity=0.325  Sum_probs=127.2

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCC-cccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHP-NIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp-~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      ..+|+|.+....... ......+.+|+.++..+.|+ +|+.+.+++....    ..+++++++.++++.+++...... .
T Consensus        23 ~~~~~k~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~-~   96 (384)
T COG0515          23 KLVALKVLAKKLESK-SKEVERFLREIQILASLNHPPNIVKLYDFFQDEG----SLYLVMEYVDGGSLEDLLKKIGRK-G   96 (384)
T ss_pred             cEEEEEeechhhccc-hhHHHHHHHHHHHHHHccCCcceeeEEEEEecCC----EEEEEEecCCCCcHHHHHHhcccc-c
Confidence            457888887542211 23577889999999999888 7999999985433    379999999999999777654311 2


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-cEEEeecCcccc--------------ccCCCcccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHT--------------IENKKYLSA  150 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~--------------~~~~~t~~y  150 (218)
                      .++...+..++.|++.++.|+|+  .+++|||++|+||+++..+ .++++|||.+..              ....++..|
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~H~--~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~  174 (384)
T COG0515          97 PLSESEALFILAQILSALEYLHS--KGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGY  174 (384)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCcccccccccccccccccc
Confidence            48899999999999999999999  6699999999999999988 799999998752              355789999


Q ss_pred             cccccCC-----CCch----------hhhhhhCCCCCCcchh
Q psy238          151 TRQTYGR-----PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~~-----~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +|||...     ....          .+++++|..||.....
T Consensus       175 ~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~  216 (384)
T COG0515         175 MAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKN  216 (384)
T ss_pred             CCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCc
Confidence            9999733     2332          4556788888665543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.63  E-value=2.6e-15  Score=115.74  Aligned_cols=118  Identities=17%  Similarity=0.134  Sum_probs=87.2

Q ss_pred             CCCcEEEEEEeecccccc--c----------------HHHHHHHHHHHHHhhcCCCCc--ccceeeeeecCCCCCCeEEE
Q psy238            4 EEGVEVVWNEVQFSERKN--F----------------KAQEEKIQQVFENLTQLEHPN--IVKFHRYWTDTHNDKPRVIF   63 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~--~----------------~~~~~~~~~ei~~l~~l~hp~--iv~l~~~~~~~~~~~~~~~l   63 (218)
                      .+|+.||||++.......  .                ......+..|+.++..+.+++  ++.+++.    .    ..++
T Consensus        37 ~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~v~~~~~~----~----~~~l  108 (198)
T cd05144          37 PDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPVPKPIDW----N----RHAV  108 (198)
T ss_pred             CCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCCCCceeec----C----CceE
Confidence            379999999977432100  0                011224667888888887774  4444332    1    2589


Q ss_pred             EEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           64 ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        64 v~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ||||++|++|..+...          .....++.+++.++.++|+  .+|+|+||+|.||+++.++.++|+|||++..
T Consensus       109 v~e~~~g~~L~~~~~~----------~~~~~~~~~i~~~l~~lh~--~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~  174 (198)
T cd05144         109 VMEYIDGVELYRVRVL----------EDPEEVLDEILEEIVKAYK--HGIIHGDLSEFNILVDDDEKIYIIDWPQMVS  174 (198)
T ss_pred             EEEEeCCcchhhcccc----------ccHHHHHHHHHHHHHHHHH--CCCCcCCCCcccEEEcCCCcEEEEECCcccc
Confidence            9999999888765421          2345788899999999999  7799999999999999999999999998864

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1266|consensus

Probab=99.62  E-value=2.9e-16  Score=125.73  Aligned_cols=157  Identities=71%  Similarity=1.105  Sum_probs=132.8

Q ss_pred             CCCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHHh
Q psy238            1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         1 ~d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ||++.|-+|++..+....+.+...........+..|-++-|.|||+++.++.+... +..+..++.+|++.|+|..+|++
T Consensus        86 md~e~g~evvwneVq~~~rK~~~~qeek~~~vFdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkr  165 (458)
T KOG1266|consen   86 MDTEEGVEVVWNEVQFSERKNPKEQEEKRRAVFDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKR  165 (458)
T ss_pred             hhhccCchhhHHHHHHHHhcChhhCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHH
Confidence            57888999999988887777766666666777778888899999999999988655 56788999999999999999999


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKY  147 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t  147 (218)
                      .......++.....+|+.||++||.|||+|...|+|+++.-+.|++..+|.++|..-.....            ....+.
T Consensus       166 t~~~~~a~~~~~wkkw~tqIlsal~yLhs~~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~  245 (458)
T KOG1266|consen  166 TKKNQKALFQKAWKKWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSL  245 (458)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccC
Confidence            88877788899999999999999999999888899999999999999999999865332222            345667


Q ss_pred             ccccccccCC
Q psy238          148 LSATRQTYGR  157 (218)
Q Consensus       148 ~~y~aPE~~~  157 (218)
                      ++|.+|+.|.
T Consensus       246 ~g~~a~~sg~  255 (458)
T KOG1266|consen  246 PGFSAPESGT  255 (458)
T ss_pred             CccccCCcCc
Confidence            8999999865

>KOG0590|consensus

Probab=99.61  E-value=3.2e-16  Score=138.45  Aligned_cols=141  Identities=18%  Similarity=0.163  Sum_probs=113.6

Q ss_pred             HHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhc
Q psy238           29 IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHS  108 (218)
Q Consensus        29 ~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  108 (218)
                      +..|+-+-..+.|||++..+..+.+...    .+-+||||++ +|..++...    ..+....+-.++.|++.|+.|||+
T Consensus       368 i~sE~~i~~~l~h~~~~e~l~~~~~~~~----~~~~mE~~~~-Dlf~~~~~~----~~~~~~e~~c~fKqL~~Gv~y~h~  438 (601)
T KOG0590|consen  368 ITSEFCIGSSLSHPNIIETLDIVQEIDG----ILQSMEYCPY-DLFSLVMSN----GKLTPLEADCFFKQLLRGVKYLHS  438 (601)
T ss_pred             hhhheeecccccCCchhhhHHHHhhccc----chhhhhcccH-HHHHHHhcc----cccchhhhhHHHHHHHHHHHHHHh
Confidence            5667777788899999888776665432    3344999998 999998764    248888999999999999999999


Q ss_pred             CCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCcccccccccCC--CCch-----------hh
Q psy238          109 CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYLSATRQTYGR--PISG-----------QY  163 (218)
Q Consensus       109 ~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~~y~aPE~~~--~~~~-----------~~  163 (218)
                        .||.|||+||+|+++..+|.++|+|||.+..            ....|+.+|+|||+..  .+.+           ..
T Consensus       439 --~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~  516 (601)
T KOG0590|consen  439 --MGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYI  516 (601)
T ss_pred             --cCceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEE
Confidence              6699999999999999999999999998754            5678999999999743  3333           56


Q ss_pred             hhhhCCCCCCcchhhhh
Q psy238          164 EIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       164 ei~tg~~p~~~~~~ee~  180 (218)
                      .|++|+.||.....++.
T Consensus       517 ~m~~~~~~Wk~a~~~~~  533 (601)
T KOG0590|consen  517 CMILGRFPWKVAKKSDN  533 (601)
T ss_pred             EEecCCCcccccccccc
Confidence            78888999976665544

>KOG4158|consensus

Probab=99.61  E-value=2.7e-15  Score=122.99  Aligned_cols=127  Identities=17%  Similarity=0.309  Sum_probs=100.1

Q ss_pred             CCCcccceeeeeecCC-----------------------CCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHH
Q psy238           40 EHPNIVKFHRYWTDTH-----------------------NDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWC   96 (218)
Q Consensus        40 ~hp~iv~l~~~~~~~~-----------------------~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~   96 (218)
                      .|||||++.++|.++-                       .....+|+||..++ .+|..++....     .+..+..-++
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~~~~-----~s~r~~~~~l  347 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLWTRH-----RSYRTGRVIL  347 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHhcCC-----CchHHHHHHH
Confidence            5999999999887732                       12345899999995 79999998653     5667888899


Q ss_pred             HHHHHHHHHhhcCCCCcccCCCCCCcEEE--ecC--CcEEEeecCcccc--------------ccCCCcccccccccCCC
Q psy238           97 SQILSALSYLHSCSPPIIHGNLTCDTIFI--QHN--GLVKIGCDTYTHT--------------IENKKYLSATRQTYGRP  158 (218)
Q Consensus        97 ~qi~~~l~~lH~~~~~iiH~dlkp~NiLl--~~~--~~~ki~dfg~~~~--------------~~~~~t~~y~aPE~~~~  158 (218)
                      .|+++|+.|||.  +||.|||||++|||+  ++|  ..+.|+|||.+-.              ...-|....||||+...
T Consensus       348 aQlLEav~hL~~--hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta  425 (598)
T KOG4158|consen  348 AQLLEAVTHLHK--HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATA  425 (598)
T ss_pred             HHHHHHHHHHHH--ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhc
Confidence            999999999999  889999999999999  344  4678999997643              22345566799998442


Q ss_pred             Cch------------------hhhhhhCCCCCCc
Q psy238          159 ISG------------------QYEIVTKTNNVTE  174 (218)
Q Consensus       159 ~~~------------------~~ei~tg~~p~~~  174 (218)
                      ...                  +|||++-..||..
T Consensus       426 ~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~  459 (598)
T KOG4158|consen  426 VPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYK  459 (598)
T ss_pred             CCCCceeeccchhhhhhhhhhHHHHhccCCcccc
Confidence            221                  7999999999976

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.60  E-value=9.6e-15  Score=128.47  Aligned_cols=97  Identities=16%  Similarity=0.223  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Q psy238           26 EEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSY  105 (218)
Q Consensus        26 ~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~  105 (218)
                      ...+.+|+.++..++|++++....++.+..    ..++||||++|++|.+++.            ....++.|++.+|.+
T Consensus       380 ~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~----~~~lv~E~~~g~~L~~~l~------------~~~~~~~~i~~~L~~  443 (535)
T PRK09605        380 TERTRAEARLLSEARRAGVPTPVIYDVDPE----EKTIVMEYIGGKDLKDVLE------------GNPELVRKVGEIVAK  443 (535)
T ss_pred             HHHHHHHHHHHHhhcccCCCeeEEEEEeCC----CCEEEEEecCCCcHHHHHH------------HHHHHHHHHHHHHHH
Confidence            456889999999999999888766655533    3689999999999999885            235688999999999


Q ss_pred             hhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          106 LHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       106 lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ||+  .+++||||+|+|||+ .++.++|+|||++..
T Consensus       444 lH~--~giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        444 LHK--AGIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             HHh--CCCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            999  779999999999999 678999999999876

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.55  E-value=2.3e-14  Score=107.89  Aligned_cols=93  Identities=20%  Similarity=0.198  Sum_probs=77.3

Q ss_pred             CCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---ccCCCc
Q psy238           71 GSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---IENKKY  147 (218)
Q Consensus        71 ~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---~~~~~t  147 (218)
                      |||.+++....   .++++..++.++.|++.||.|||+  .+      ||+|||++.++.+++  ||.+..   ....||
T Consensus         1 GsL~~~l~~~~---~~l~~~~~~~i~~qi~~~L~~lH~--~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~~~g~   67 (176)
T smart00750        1 VSLADILEVRG---RPLNEEEIWAVCLQCLRALRELHR--QA------KSGNILLTWDGLLKL--DGSVAFKTPEQSRVD   67 (176)
T ss_pred             CcHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHh--cC------CcccEeEcCccceee--ccceEeeccccCCCc
Confidence            68999998643   459999999999999999999999  66      999999999999999  998765   345789


Q ss_pred             ccccccccC--CCCch----------hhhhhhCCCCCCcch
Q psy238          148 LSATRQTYG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       148 ~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +.|+|||+.  ..++.          +|+|++|..||....
T Consensus        68 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~  108 (176)
T smart00750       68 PYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEER  108 (176)
T ss_pred             ccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccc
Confidence            999999973  23322          799999999996543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0603|consensus

Probab=99.55  E-value=1.2e-15  Score=130.89  Aligned_cols=158  Identities=14%  Similarity=0.105  Sum_probs=127.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .|.-+|.|++.........  ......|..++..++ ||.++.++..+....    .++++++++.|+.|...+..... 
T Consensus        21 a~~~yamkvl~k~t~~~~~--~~~t~~er~il~~~~~~~f~v~lhyafqt~~----kl~l~ld~~rgg~lft~l~~~~~-   93 (612)
T KOG0603|consen   21 AGHLYAMKVLKKATLKVRD--RTHTKQERIILAFVHNTPFLVKLHYAFQTDG----KLYLILDFLRGGDLFTRLSKEVM-   93 (612)
T ss_pred             ccchhhhhccccccccccc--ccccccHHHHHhhccCCCceeeeeeeecccc----chhHhhhhcccchhhhccccCCc-
Confidence            3556777777643222211  114556777888886 999999998887654    58999999999999888877643 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccCC--
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYGR--  157 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~~--  157 (218)
                         +....+..+...++.+++++|+  .+|+|||+|++||+++.+|++++.|||.+..    ...+||..|||||+..  
T Consensus        94 ---f~~~~~~~~~aelaLald~lh~--l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~cgt~eymApEI~~gh  168 (612)
T KOG0603|consen   94 ---FDELDVAFYLAELALALDHLHK--LGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIACGTYEYRAPEIINGH  168 (612)
T ss_pred             ---hHHHHHHHHHHHHHHHHhhcch--hHHHHhcccccceeecccCccccCCchhhhHhHhhhhcccchhhhhhHhhhcc
Confidence               7888889999999999999999  6699999999999999999999999999876    3448999999999733  


Q ss_pred             ----CCch----hhhhhhCCCCCCc
Q psy238          158 ----PISG----QYEIVTKTNNVTE  174 (218)
Q Consensus       158 ----~~~~----~~ei~tg~~p~~~  174 (218)
                          .++.    ++|++||..||..
T Consensus       169 ~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  169 LSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             CCcccchhhhhhHHHHhhCCCCCch
Confidence                2322    7999999999987

>KOG1024|consensus

Probab=99.51  E-value=2.4e-13  Score=111.27  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc----cCCCCCHHHHHHHHHH
Q psy238           23 KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR----NVKKLPLSAWKRWCSQ   98 (218)
Q Consensus        23 ~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~~~~~~~~q   98 (218)
                      .-....++.|--.+-.+.|||+..+.+++.....   .-++++.++.-|+|..|+.-.++    ....++..+...++.|
T Consensus       328 ~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~---~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQ  404 (563)
T KOG1024|consen  328 QIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYA---TPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQ  404 (563)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCccceeEEEeeccC---cceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHH
Confidence            4455677788888888899999999998876433   35778888888999999984432    1233666778889999


Q ss_pred             HHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc--CCCCch-----
Q psy238           99 ILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY--GRPISG-----  161 (218)
Q Consensus        99 i~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~--~~~~~~-----  161 (218)
                      ++.|++|||+  ++|||.||..+|.+||+..+++|+|-.+++.          ........||+||-  ...++.     
T Consensus       405 la~am~hlh~--~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvW  482 (563)
T KOG1024|consen  405 LAMAMEHLHN--HGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVW  482 (563)
T ss_pred             HHHHHHHHHh--cCcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhH
Confidence            9999999999  7799999999999999999999999998876          33455788999994  223333     


Q ss_pred             -----hhhhh-hCCCCCCcchhhhhH
Q psy238          162 -----QYEIV-TKTNNVTEKKKEKEE  181 (218)
Q Consensus       162 -----~~ei~-tg~~p~~~~~~ee~~  181 (218)
                           ++|++ .|+.|+.+....|.+
T Consensus       483 sfGVllWELmtlg~~PyaeIDPfEm~  508 (563)
T KOG1024|consen  483 SFGVLLWELMTLGKLPYAEIDPFEME  508 (563)
T ss_pred             HHHHHHHHHHhcCCCCccccCHHHHH
Confidence                 56654 488888777665543

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.50  E-value=1.1e-13  Score=100.76  Aligned_cols=115  Identities=16%  Similarity=0.141  Sum_probs=89.7

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC--CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH--PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h--p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      +..+++|......    .  ...+..|+.++..+.+  +++++++.++...    +..+++|+|+.+.++..+       
T Consensus        21 ~~~~~iK~~~~~~----~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~----~~~~~v~e~~~g~~~~~~-------   83 (155)
T cd05120          21 DEDYVLKINPSRE----K--GADREREVAILQLLARKGLPVPKVLASGESD----GWSYLLMEWIEGETLDEV-------   83 (155)
T ss_pred             CCeEEEEecCCCC----c--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCC----CccEEEEEecCCeecccC-------
Confidence            3678999876321    1  4567889999999865  5888888777543    358999999987766543       


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCC-CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCS-PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~-~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                          +......++.+++.+|.+||... .+++|+|++|.|||++..+.++++||+.+..
T Consensus        84 ----~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          84 ----SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence                34556677889999999999831 2599999999999999999999999998764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.48  E-value=2.8e-13  Score=103.16  Aligned_cols=120  Identities=21%  Similarity=0.260  Sum_probs=80.1

Q ss_pred             CCcEEEEEEeecccccccHHHHH---------------------HHHHHHHHhhcCCCCc--ccceeeeeecCCCCCCeE
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEE---------------------KIQQVFENLTQLEHPN--IVKFHRYWTDTHNDKPRV   61 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~---------------------~~~~ei~~l~~l~hp~--iv~l~~~~~~~~~~~~~~   61 (218)
                      +|..||||++....... .....                     ....|...+..+.+.+  +..++++.        ..
T Consensus        20 ~~~~vavKv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~--------~~   90 (187)
T cd05119          20 DGEPVAVKIYRTGRTSF-KKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPVPKPIDLN--------RH   90 (187)
T ss_pred             CCCEEEEEEEecCccch-hhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCCCceEecC--------CC
Confidence            78999999987432111 11111                     1134555565554433  44444321        25


Q ss_pred             EEEEeccCCCCHHH-HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCcc
Q psy238           62 IFITEYMSSGSLKQ-FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYT  139 (218)
Q Consensus        62 ~lv~e~~~~~sL~~-~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~  139 (218)
                      ++||+|++++++.. .+....     .. ..+..++.+++.++.++|+ .+  |+|+||+|+||+++ ++.++|+|||.+
T Consensus        91 ~lv~e~~~g~~~~~~~l~~~~-----~~-~~~~~~~~~~~~~l~~lh~~~~--ivH~Dl~p~Nili~-~~~~~liDfg~a  161 (187)
T cd05119          91 VLVMEFIGGDGIPAPRLKDVR-----LL-EDPEELYDQILELMRKLYREAG--LVHGDLSEYNILVD-DGKVYIIDVPQA  161 (187)
T ss_pred             EEEEEEeCCCCccChhhhhhh-----hc-ccHHHHHHHHHHHHHHHhhccC--cCcCCCChhhEEEE-CCcEEEEECccc
Confidence            89999998844321 121111     11 5678899999999999998 66  99999999999999 999999999998


Q ss_pred             ccc
Q psy238          140 HTI  142 (218)
Q Consensus       140 ~~~  142 (218)
                      ...
T Consensus       162 ~~~  164 (187)
T cd05119         162 VEI  164 (187)
T ss_pred             ccc
Confidence            753

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.48  E-value=1.9e-13  Score=109.99  Aligned_cols=174  Identities=13%  Similarity=0.105  Sum_probs=103.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC----------CcccceeeeeecC--------CCCCC----
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH----------PNIVKFHRYWTDT--------HNDKP----   59 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h----------p~iv~l~~~~~~~--------~~~~~----   59 (218)
                      |.+||+.+|||+..... .......+.+.+|.-....+.+          -.++-.++.....        ..+..    
T Consensus        33 d~~t~~~~avkvf~~~~-~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~~~~~~~~~~~~~~~~~v  111 (288)
T PF14531_consen   33 DVETGEEFAVKVFLLPA-DASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIPGKPPFFERGPGQSIYWV  111 (288)
T ss_dssp             ETTTTEEEEEEEEEESS-TTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEETTS-SEEEECETTEEEEE
T ss_pred             EccCCceEEEEEEeccc-ccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEcCCCcceecCCCCcccee
Confidence            67899999999998765 3334445566666544444322          1122222222211        11111    


Q ss_pred             -eEEEEEeccCCCCHHHHHHhhccc---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEee
Q psy238           60 -RVIFITEYMSSGSLKQFLKRTKRN---VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGC  135 (218)
Q Consensus        60 -~~~lv~e~~~~~sL~~~l~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~d  135 (218)
                       +.+++|+-+. ++|.+++..-...   ...+.......+..|++..+++||+  .|++|+||+|+|++++.+|.+.|+|
T Consensus       112 ~n~~~l~P~~~-~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~--~GlVHgdi~~~nfll~~~G~v~Lg~  188 (288)
T PF14531_consen  112 LNRFLLMPRAQ-GDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHS--YGLVHGDIKPENFLLDQDGGVFLGD  188 (288)
T ss_dssp             ESEEEEEE--S-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH--TTEEEST-SGGGEEE-TTS-EEE--
T ss_pred             ehhhhccchhh-hcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhh--cceEecccceeeEEEcCCCCEEEcC
Confidence             2477888884 7998886642211   1112233345566899999999999  7799999999999999999999999


Q ss_pred             cCcccc-----ccCCCcccccccccCCC----------Cch----------hhhhhhCCCCCCcchhhh
Q psy238          136 DTYTHT-----IENKKYLSATRQTYGRP----------ISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       136 fg~~~~-----~~~~~t~~y~aPE~~~~----------~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+....     .....+..|.+||+...          ++.          +|.||+|+.||.....+-
T Consensus       189 F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~  257 (288)
T PF14531_consen  189 FSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEA  257 (288)
T ss_dssp             GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGS
T ss_pred             hHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCccc
Confidence            987654     11455677889986221          122          699999999998665443

>KOG0195|consensus

Probab=99.43  E-value=7.6e-14  Score=109.54  Aligned_cols=166  Identities=18%  Similarity=0.236  Sum_probs=126.8

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      +.|..+++|++...+  -.......|..|.-.|+-+.||||+.+++.|.++.    ++.++..||+.|||..+++...+ 
T Consensus       211 wqgndivakil~vr~--~t~risrdfneefp~lrifshpnilpvlgacnspp----nlv~isq~mp~gslynvlhe~t~-  283 (448)
T KOG0195|consen  211 WQGNDIVAKILNVRE--VTARISRDFNEEFPALRIFSHPNILPVLGACNSPP----NLVIISQYMPFGSLYNVLHEQTS-  283 (448)
T ss_pred             ccCcchhhhhhhhhh--cchhhcchhhhhCcceeeecCCchhhhhhhccCCC----CceEeeeeccchHHHHHHhcCcc-
Confidence            456778888887642  22445567888888899999999999999997754    59999999999999999997643 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEE--eecCcccc-ccCCCcccccccccCC--C
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI--GCDTYTHT-IENKKYLSATRQTYGR--P  158 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki--~dfg~~~~-~~~~~t~~y~aPE~~~--~  158 (218)
                       ..++-.++.+++..++.|+.|||+...-|.---|.+..+++|++...+|  +|.-++.. .+..-.+.||+||-..  +
T Consensus       284 -vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y~pawmspealqrkp  362 (448)
T KOG0195|consen  284 -VVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAYSPAWMSPEALQRKP  362 (448)
T ss_pred             -EEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceeeeeccccccCcccCCHHHHhcCc
Confidence             4577889999999999999999995333555678999999999876555  55555554 4556688999999522  1


Q ss_pred             Cch-------------hhhhhhCCCCCCcchh
Q psy238          159 ISG-------------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       159 ~~~-------------~~ei~tg~~p~~~~~~  177 (218)
                      -+.             ++|+.|-..||.+.+.
T Consensus       363 ed~n~raadmwsfaillwel~trevpfadlsp  394 (448)
T KOG0195|consen  363 EDLNIRAADMWSFAILLWELNTREVPFADLSP  394 (448)
T ss_pred             hhcchhhhhHHHHHHHHHHhhccccccccCCc
Confidence            111             5788888888875543

>KOG1166|consensus

Probab=99.37  E-value=4.6e-13  Score=121.89  Aligned_cols=140  Identities=16%  Similarity=0.176  Sum_probs=102.6

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC---CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE---HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~---hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +|+.||+|+-...+...+       ..-.+++.+|.   -+.|+.+...+.-.+.    .++|++|.+.|||.+++... 
T Consensus       721 ~~~~~alK~e~P~~~WEf-------YI~~q~~~RLk~~~~~~~~~~~~a~~~~~~----S~lv~ey~~~Gtlld~~N~~-  788 (974)
T KOG1166|consen  721 NGKLVALKVEKPPNPWEF-------YICLQVMERLKPQMLPSIMHISSAHVFQNA----SVLVSEYSPYGTLLDLINTN-  788 (974)
T ss_pred             CCcEEEEEeecCCCceee-------eehHHHHHhhchhhhcchHHHHHHHccCCc----ceeeeeccccccHHHhhccC-
Confidence            388999998886533221       11122333333   2345555444333332    58999999999999999843 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-------CCcEEEeecCcccc----------ccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-------NGLVKIGCDTYTHT----------IEN  144 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-------~~~~ki~dfg~~~~----------~~~  144 (218)
                         ..+++..+..++.|++..++.||.  .+|||+||||+|+||..       ..-++|+|||.+-.          ...
T Consensus       789 ---~~m~e~lv~~~~~qml~ive~lH~--~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~  863 (974)
T KOG1166|consen  789 ---KVMDEYLVMFFSCQMLRIVEHLHA--MGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAV  863 (974)
T ss_pred             ---CCCCchhhhHHHHHHHHHHHHHHh--cceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeee
Confidence               459999999999999999999999  55999999999999953       35689999998754          566


Q ss_pred             CCccccccccc--CCCCch
Q psy238          145 KKYLSATRQTY--GRPISG  161 (218)
Q Consensus       145 ~~t~~y~aPE~--~~~~~~  161 (218)
                      ++|-.+-++|.  |.+++.
T Consensus       864 ~~td~f~C~EM~~grpWtY  882 (974)
T KOG1166|consen  864 WHTDLFDCIEMREGRPWTY  882 (974)
T ss_pred             eccccchhHHHhcCCCCch
Confidence            77888889997  666665

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.37  E-value=7.2e-12  Score=95.86  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=70.9

Q ss_pred             HHHHHhhcCCC--CcccceeeeeecCCCCCCeEEEEEeccCCCCHHH-HHHhhcccCCCCCHHHHHHHHHHHHHHHHHh-
Q psy238           31 QVFENLTQLEH--PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ-FLKRTKRNVKKLPLSAWKRWCSQILSALSYL-  106 (218)
Q Consensus        31 ~ei~~l~~l~h--p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~-~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~l-  106 (218)
                      +|+..|+++..  .+++.++.+.        .-++||||+.+..+.. .+...     .++...+..+..+++.+|..| 
T Consensus        75 kE~r~L~rl~~~Gv~vP~pi~~~--------~~~lvME~Ig~~~~~~~~Lkd~-----~~~~~~~~~i~~~i~~~l~~l~  141 (197)
T cd05146          75 KEMHNLKRMQKAGIPCPEVVVLK--------KHVLVMSFIGDDQVPAPKLKDA-----KLNDEEMKNAYYQVLSMMKQLY  141 (197)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEec--------CCEEEEEEcCCCCccchhhhcc-----ccCHHHHHHHHHHHHHHHHHHH
Confidence            79999998853  5566776542        2489999996543321 22221     255556677889999999999 


Q ss_pred             hcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc
Q psy238          107 HSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI  142 (218)
Q Consensus       107 H~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~  142 (218)
                      |.  .+|+|+||+|.|||++ ++.+.|+|||.+-..
T Consensus       142 H~--~glVHGDLs~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         142 KE--CNLVHADLSEYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             Hh--CCeecCCCCHHHEEEE-CCcEEEEECCCceeC
Confidence            88  5699999999999997 578999999976643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.32  E-value=8.2e-12  Score=107.15  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=56.9

Q ss_pred             EEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHH-HHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcc
Q psy238           61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILS-ALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYT  139 (218)
Q Consensus        61 ~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~-~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~  139 (218)
                      .++||||++|++|.++......   ..+   ...++.+++. .+..+|.  .|++|+|++|.||+++.++.++++|||++
T Consensus       233 ~vLvmE~i~G~~L~~~~~~~~~---~~~---~~~ia~~~~~~~l~ql~~--~g~~H~D~hPgNilv~~~g~i~liDfG~~  304 (437)
T TIGR01982       233 RVLTMEWIDGIPLSDIAALDEA---GLD---RKALAENLARSFLNQVLR--DGFFHADLHPGNIFVLKDGKIIALDFGIV  304 (437)
T ss_pred             ceEEEEeECCcccccHHHHHhc---CCC---HHHHHHHHHHHHHHHHHh--CCceeCCCCcccEEECCCCcEEEEeCCCe
Confidence            5899999999999988754321   122   2345555554 4677899  77999999999999999999999999988


Q ss_pred             cc
Q psy238          140 HT  141 (218)
Q Consensus       140 ~~  141 (218)
                      ..
T Consensus       305 ~~  306 (437)
T TIGR01982       305 GR  306 (437)
T ss_pred             eE
Confidence            65

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.29  E-value=1.5e-10  Score=92.99  Aligned_cols=133  Identities=9%  Similarity=0.031  Sum_probs=90.9

Q ss_pred             CCcEEEEEEeecccccc-cHH------HHHHHHHHHHHhhcCCCCc--ccceeeeeecCC-CCCCeEEEEEeccCCC-CH
Q psy238            5 EGVEVVWNEVQFSERKN-FKA------QEEKIQQVFENLTQLEHPN--IVKFHRYWTDTH-NDKPRVIFITEYMSSG-SL   73 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~-~~~------~~~~~~~ei~~l~~l~hp~--iv~l~~~~~~~~-~~~~~~~lv~e~~~~~-sL   73 (218)
                      .|+.|.||......... ...      -...+.+|...+..+..-+  .+.+..++.... ......++||+++++. +|
T Consensus        44 ~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL  123 (268)
T PRK15123         44 AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISL  123 (268)
T ss_pred             CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccH
Confidence            56789999775321100 000      0113678888887774333  334444443321 1123568999999875 89


Q ss_pred             HHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-------CCcEEEeecCcccc
Q psy238           74 KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-------NGLVKIGCDTYTHT  141 (218)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-------~~~~ki~dfg~~~~  141 (218)
                      .+++.....  .+.+......++.+++..+..||.  .||+|+||+|.|||++.       ++.+.++||+.+..
T Consensus       124 ~~~~~~~~~--~~~~~~~~~~ll~~la~~i~~LH~--~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        124 EDYCADWAT--NPPDPRLKRMLIKRVATMVRDMHA--AGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHHhhcc--cCCCHHHHHHHHHHHHHHHHHHHH--CcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            999864322  235567778899999999999999  77999999999999975       47899999998854

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.25  E-value=2e-11  Score=91.36  Aligned_cols=113  Identities=16%  Similarity=0.088  Sum_probs=77.5

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcc-cceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNI-VKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~i-v~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .|..|++|+......     ....+..|+.++..+.+.++ ++++.+...      ..++||++++|.++...  .    
T Consensus        20 ~~~~~~lK~~~~~~~-----~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~------~~~lv~e~i~G~~l~~~--~----   82 (170)
T cd05151          20 ANKKYVVRIPGNGTE-----LLINRENEAENSKLAAEAGIGPKLYYFDPE------TGVLITEFIEGSELLTE--D----   82 (170)
T ss_pred             CCeEEEEEeCCCCcc-----cccCHHHHHHHHHHHHHhCCCCceEEEeCC------CCeEEEEecCCCccccc--c----
Confidence            467899998763211     12235678888887755444 445544321      24799999998877543  0    


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCC---CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCS---PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                         .   ....++.+++.+|..||+.+   .+++|+|++|.||+++ ++.+.++||+.+..
T Consensus        83 ---~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          83 ---F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             ---c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence               1   11235678999999999932   1249999999999999 67899999998764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.23  E-value=2.5e-11  Score=105.90  Aligned_cols=72  Identities=11%  Similarity=0.113  Sum_probs=51.7

Q ss_pred             EEEEEeccCCCCHHHHHH--hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC----cEEEe
Q psy238           61 VIFITEYMSSGSLKQFLK--RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG----LVKIG  134 (218)
Q Consensus        61 ~~lv~e~~~~~sL~~~l~--~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~----~~ki~  134 (218)
                      .++||||+.|+++.++-.  ..+.+...+....+..++.|++       .  .|++|+|++|.||+++.++    .+.++
T Consensus       236 ~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif-------~--~GffHaDpHPGNIlv~~~g~~~~~i~ll  306 (537)
T PRK04750        236 TVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVF-------R--DGFFHADMHPGNIFVSYDPPENPRYIAL  306 (537)
T ss_pred             ceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH-------h--CCeeeCCCChHHeEEecCCCCCCeEEEE
Confidence            589999999999987532  2211111233444444555553       4  6699999999999999888    99999


Q ss_pred             ecCcccc
Q psy238          135 CDTYTHT  141 (218)
Q Consensus       135 dfg~~~~  141 (218)
                      |||++..
T Consensus       307 DFGivg~  313 (537)
T PRK04750        307 DFGIVGS  313 (537)
T ss_pred             ecceEEE
Confidence            9998765

>KOG1243|consensus

Probab=99.23  E-value=1.1e-10  Score=101.61  Aligned_cols=120  Identities=26%  Similarity=0.365  Sum_probs=100.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      +.+|.+|.|..++.+..    .....+.+-++-|+.++||+|+.++..+...+    .+|+|+|.+  ..|..++...  
T Consensus        34 k~~~~~vsVF~~~~~~~----~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~----~~ylvTErV--~Pl~~~lk~l--  101 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNG----EVTELAKRAVKRLKTLRHPNILSYLDTTEEEG----TLYLVTERV--RPLETVLKEL--  101 (690)
T ss_pred             eccCCceEEEEEeCCCc----hhhHHHHHHHHHhhhccCchhhhhhhhhcccC----ceEEEeecc--ccHHHHHHHh--
Confidence            46889999999985422    44556677788899999999999998887654    699999998  4788888764  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                           ....+..-+.||+.||.|||. |+  ++|++|.-..|+|+..|..+|++|.++..
T Consensus       102 -----~~~~v~~Gl~qIl~AL~FL~~d~~--lvHgNv~~~SVfVn~~GeWkLggle~v~~  154 (690)
T KOG1243|consen  102 -----GKEEVCLGLFQILAALSFLNDDCN--LVHGNVCKDSVFVNESGEWKLGGLELVSK  154 (690)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHhccCC--eeeccEeeeeEEEcCCCcEEEeeeEEEec
Confidence                 355677778999999999986 66  99999999999999999999999988765

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.22  E-value=9.6e-11  Score=87.64  Aligned_cols=118  Identities=19%  Similarity=0.189  Sum_probs=82.2

Q ss_pred             CcEEEEEEeecccc----cccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            6 GVEVVWNEVQFSER----KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         6 g~~vAvK~~~~~~~----~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+++|.-....-    -+..-...+..+|+.++..+.--+|...+-++.+++.    ..++|||++|..|.+++... 
T Consensus        19 g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~----~~I~me~I~G~~lkd~l~~~-   93 (204)
T COG3642          19 GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDN----GLIVMEYIEGELLKDALEEA-   93 (204)
T ss_pred             CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCC----CEEEEEEeCChhHHHHHHhc-
Confidence            55566665442210    1112234567789999988865454444334444432    58999999998899888753 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                                ...++..+-.-+.-||.  .||+|+||.++||+++.+. +.++|||++..
T Consensus        94 ----------~~~~~r~vG~~vg~lH~--~givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          94 ----------RPDLLREVGRLVGKLHK--AGIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             ----------chHHHHHHHHHHHHHHh--cCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence                      13455666677888999  7799999999999997665 99999999875

>KOG1023|consensus

Probab=99.20  E-value=4.3e-11  Score=102.41  Aligned_cols=137  Identities=28%  Similarity=0.371  Sum_probs=110.4

Q ss_pred             hhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc-c
Q psy238           36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPI-I  114 (218)
Q Consensus        36 l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i-i  114 (218)
                      |+.+.|.|+.+++|.+.+.    +.++.|.+||+-|+|.+.+....   ..++......+++.++.||.|+|+.  .| .
T Consensus         1 l~~l~h~n~~~f~g~~~~~----~~~~~i~~~c~rGsl~D~i~~~~---~~~d~~F~~s~~rdi~~Gl~ylh~s--~i~~   71 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDG----PEMIVIWEYCSRGSLLDILSNED---IKLDYFFILSFIRDISKGLAYLHNS--PIGY   71 (484)
T ss_pred             CcccchhhhhhheeeEecC----CceEEEEeeecCccHHhHHhccc---cCccHHHHHHHHHHHHHHHHHHhcC--ccee
Confidence            4568999999999999886    35899999999999999998743   3477777888899999999999994  35 9


Q ss_pred             cCCCCCCcEEEecCCcEEEeecCcccccc----------CCCcccccccccCCC---------Cch----------hhhh
Q psy238          115 HGNLTCDTIFIQHNGLVKIGCDTYTHTIE----------NKKYLSATRQTYGRP---------ISG----------QYEI  165 (218)
Q Consensus       115 H~dlkp~NiLl~~~~~~ki~dfg~~~~~~----------~~~t~~y~aPE~~~~---------~~~----------~~ei  165 (218)
                      |+.|++.|.+++....++|+|||+.....          ..-..-|.|||+...         .+.          ++||
T Consensus        72 hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei  151 (484)
T KOG1023|consen   72 HGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEI  151 (484)
T ss_pred             eeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHH
Confidence            99999999999999999999999877632          123466789997332         111          6999


Q ss_pred             hhCCCCCCcchhhhhH
Q psy238          166 VTKTNNVTEKKKEKEE  181 (218)
Q Consensus       166 ~tg~~p~~~~~~ee~~  181 (218)
                      ++-..||+.....+..
T Consensus       152 ~~r~~~~~~~~~~~~~  167 (484)
T KOG1023|consen  152 LFRSGPFDLRNLVEDP  167 (484)
T ss_pred             HhccCccccccccCCh
Confidence            9999999876655543

>KOG1240|consensus

Probab=99.18  E-value=8.1e-12  Score=113.42  Aligned_cols=138  Identities=17%  Similarity=0.166  Sum_probs=102.5

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .|. |+||++-..+..........-+.+++ ...+++||++++.-+-...    ...|||=+|.. .+|.|.+.-++   
T Consensus        46 eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~----kAAylvRqyvk-hnLyDRlSTRP---  115 (1431)
T KOG1240|consen   46 EGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTD----KAAYLVRQYVK-HNLYDRLSTRP---  115 (1431)
T ss_pred             Cce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhh----HHHHHHHHHHh-hhhhhhhccch---
Confidence            344 99999886544333333333444555 5666899999997664432    24688889985 69999998654   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------------ccCCCccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------------IENKKYLS  149 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------------~~~~~t~~  149 (218)
                       -+.......++.|++.||..+|.  .||+|+|||.+||||..=.++.|+||..-..               .+...-.-
T Consensus       116 -FL~~iEKkWiaFQLL~al~qcH~--~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtC  192 (1431)
T KOG1240|consen  116 -FLVLIEKKWIAFQLLKALSQCHK--LGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTC  192 (1431)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHH--cCccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceee
Confidence             27778888899999999999999  6699999999999999999999999874322               23333456


Q ss_pred             cccccc
Q psy238          150 ATRQTY  155 (218)
Q Consensus       150 y~aPE~  155 (218)
                      |+|||.
T Consensus       193 YiAPER  198 (1431)
T KOG1240|consen  193 YIAPER  198 (1431)
T ss_pred             ecChHh
Confidence            899995

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.18  E-value=1.6e-10  Score=88.01  Aligned_cols=122  Identities=21%  Similarity=0.196  Sum_probs=75.8

Q ss_pred             CCCcEEEEEEeecccc----------------------cccHHHHHHHHHHHHHhhcCCCC--cccceeeeeecCCCCCC
Q psy238            4 EEGVEVVWNEVQFSER----------------------KNFKAQEEKIQQVFENLTQLEHP--NIVKFHRYWTDTHNDKP   59 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~----------------------~~~~~~~~~~~~ei~~l~~l~hp--~iv~l~~~~~~~~~~~~   59 (218)
                      .+|..||||+......                      ...........+|...|..+..-  +++.++.+..       
T Consensus         8 ~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~~-------   80 (188)
T PF01163_consen    8 PDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYNR-------   80 (188)
T ss_dssp             CTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEET-------
T ss_pred             CCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEeC-------
Confidence            4678999999885310                      01111234667899999999765  4666665431       


Q ss_pred             eEEEEEeccC--CCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH-hhcCCCCcccCCCCCCcEEEecCCcEEEeec
Q psy238           60 RVIFITEYMS--SGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSY-LHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD  136 (218)
Q Consensus        60 ~~~lv~e~~~--~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~-lH~~~~~iiH~dlkp~NiLl~~~~~~ki~df  136 (218)
                       -++||||++  |..+..+....      ++......++.+++..+.. +|.  .||+|+||.+.|||++++ .+.|+||
T Consensus        81 -~~ivME~I~~~G~~~~~l~~~~------~~~~~~~~~~~~il~~~~~~~~~--~givHGDLs~~NIlv~~~-~~~iIDf  150 (188)
T PF01163_consen   81 -NVIVMEYIGEDGVPLPRLKDVD------LSPEEPKELLEEILEEIIKMLHK--AGIVHGDLSEYNILVDDG-KVYIIDF  150 (188)
T ss_dssp             -TEEEEE--EETTEEGGCHHHCG------GGGSTHHHHHHHHHHHHHHHHHC--TTEEESS-STTSEEEETT-CEEE--G
T ss_pred             -CEEEEEecCCCccchhhHHhcc------ccchhHHHHHHHHHHHHHHHHHh--cCceecCCChhhEEeecc-eEEEEec
Confidence             389999997  65554443322      1123455667777775555 578  569999999999999887 9999999


Q ss_pred             Cccccc
Q psy238          137 TYTHTI  142 (218)
Q Consensus       137 g~~~~~  142 (218)
                      |.+...
T Consensus       151 ~qav~~  156 (188)
T PF01163_consen  151 GQAVDS  156 (188)
T ss_dssp             TTEEET
T ss_pred             Ccceec
Confidence            977653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3087|consensus

Probab=99.15  E-value=4.8e-10  Score=83.80  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=91.8

Q ss_pred             CCCCcEEEEEEeecccc----cccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCC-CCHHHHH
Q psy238            3 TEEGVEVVWNEVQFSER----KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSS-GSLKQFL   77 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~----~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~-~sL~~~l   77 (218)
                      ...|+.+.||.-....-    -+..-...+..+|+.+|.+++--+|.-..-+|.+...    -+++|||++| .++.+++
T Consensus        27 ~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~----~~i~ME~~~g~~~vk~~i  102 (229)
T KOG3087|consen   27 SFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYG----GQIYMEFIDGASTVKDFI  102 (229)
T ss_pred             ccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCC----CeEEEEeccchhHHHHHH
Confidence            35677777775442210    1223345677889999988875565554445555443    4899999975 4888998


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC---cEEEeecCcccc
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG---LVKIGCDTYTHT  141 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~---~~ki~dfg~~~~  141 (218)
                      ......  +........++.+|-..+.-||.  +.|+|+||.++||++.+++   .+.++|||++..
T Consensus       103 ~~~~~~--~~~d~~~~~~~~~iG~~igklH~--ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen  103 LSTMED--ESEDEGLAELARRIGELIGKLHD--NDIIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             HHHccC--cccchhHHHHHHHHHHHHHHhhh--CCeecccccccceEEecCCCcCceEEEeecchhc
Confidence            877542  23333336788889999999999  7899999999999996553   458999999875

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.11  E-value=1.3e-09  Score=84.48  Aligned_cols=110  Identities=17%  Similarity=0.219  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHhhcCCC--CcccceeeeeecCCCCCCeEEEEEeccCCC-CHHHHHHhhcccCCCCCHHHHHHHHHHHHHH
Q psy238           26 EEKIQQVFENLTQLEH--PNIVKFHRYWTDTHNDKPRVIFITEYMSSG-SLKQFLKRTKRNVKKLPLSAWKRWCSQILSA  102 (218)
Q Consensus        26 ~~~~~~ei~~l~~l~h--p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~-sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~  102 (218)
                      ...+.+|...+..+..  -.++..+.+...........++|++++++. +|.+++.....    .+......++.+++..
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~----~~~~~~~~ll~~l~~~  130 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ----LDPSQRRELLRALARL  130 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc----cchhhHHHHHHHHHHH
Confidence            3467778877777743  335555666555333234568999999874 79999986432    5666778899999999


Q ss_pred             HHHhhcCCCCcccCCCCCCcEEEecCC---cEEEeecCcccc
Q psy238          103 LSYLHSCSPPIIHGNLTCDTIFIQHNG---LVKIGCDTYTHT  141 (218)
Q Consensus       103 l~~lH~~~~~iiH~dlkp~NiLl~~~~---~~ki~dfg~~~~  141 (218)
                      +.-||.  .||+|+|++|.|||++.++   .+.++||+-+..
T Consensus       131 i~~lH~--~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  131 IAKLHD--AGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             HHHHHH--CcCCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            999999  7799999999999999887   899999987664

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG1033|consensus

Probab=99.03  E-value=3.8e-11  Score=101.63  Aligned_cols=90  Identities=20%  Similarity=0.245  Sum_probs=78.1

Q ss_pred             eEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcc
Q psy238           60 RVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYT  139 (218)
Q Consensus        60 ~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~  139 (218)
                      ++|+.|++|.-.+|.+||..... ....++.....++.|++.|+.|     ++.+|+|++|.||+...+..++|.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~-~e~~s~s~~~~~~~q~~~~~~y-----k~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRT-GEERSLSLMLDIFKQIAPAVEY-----KGLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCc-ccccchhHHHHHHHhhccchhh-----ccchhhhccccccccccchhhhhhhhhhe
Confidence            58899999999999999975543 2457788999999999999999     34999999999999999999999999986


Q ss_pred             cc--------------ccCCCccccccccc
Q psy238          140 HT--------------IENKKYLSATRQTY  155 (218)
Q Consensus       140 ~~--------------~~~~~t~~y~aPE~  155 (218)
                      ..              ....||.+||+||.
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQ  433 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQ  433 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHH
Confidence            54              45688999999995

>KOG3741|consensus

Probab=99.01  E-value=1.7e-09  Score=92.03  Aligned_cols=131  Identities=18%  Similarity=0.222  Sum_probs=98.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCC-CCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSS-GSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~-~sL~~~l~~~~   81 (218)
                      ..||..|++|+++.....+    ....-.-+++++++.|+|||++.++|.....+...+++|++|+++ ++|.++.-...
T Consensus       298 ~~DG~~YvLkRlhg~r~~~----~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~~~  373 (655)
T KOG3741|consen  298 NVDGNAYVLKRLHGDRDQS----TNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFANP  373 (655)
T ss_pred             ccCCceeeeeeeccccccC----cccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHccCC
Confidence            4588999999995321111    112234577899999999999999988555555679999999875 46777543322


Q ss_pred             -----------ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcc
Q psy238           82 -----------RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYT  139 (218)
Q Consensus        82 -----------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~  139 (218)
                                 .++...++...|.++.|+..||.++|+  .|+..+-|.|.+||+..+.+++|+.-|+.
T Consensus       374 ~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHs--sGLAck~L~~~kIlv~G~~RIriS~C~i~  440 (655)
T KOG3741|consen  374 PFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHS--SGLACKTLDLKKILVTGKMRIRISGCGIM  440 (655)
T ss_pred             ccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHh--cCceeecccHhHeEeeCcceEEEecccce
Confidence                       122347889999999999999999999  66999999999999998888888755543

>KOG0590|consensus

Probab=98.99  E-value=6.8e-11  Score=104.85  Aligned_cols=161  Identities=15%  Similarity=0.123  Sum_probs=119.6

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHH-hhcccCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK-RTKRNVK   85 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~-~~~~~~~   85 (218)
                      .+|.+.+....  ........+..|..+-..+. |+|++.+++...+..    ..++++++..|+++.+.+. ...   .
T Consensus        48 ~~a~~~~s~~~--~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~----~~~~~~~~s~g~~~f~~i~~~~~---~  118 (601)
T KOG0590|consen   48 SSATKPISIPP--KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPR----SYLLSLSYSDGGSLFSKISHPDS---T  118 (601)
T ss_pred             eeeccCCCCCC--CccchhhhcCccccccccccccccccccCCccCCCc----ccccccCcccccccccccccCCc---c
Confidence            45666555432  22334445555666666665 999999998876654    4789999999999988883 322   1


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhh-cCCCCcccCCCCCCcEEEecCC-cEEEeecCcccc-----------ccCCC-ccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLH-SCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHT-----------IENKK-YLSAT  151 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH-~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~-----------~~~~~-t~~y~  151 (218)
                      ..+...+-.++.|+..++.|+| .  .++.|+|++|+|.+++..+ .++++|||++..           ...+| ++.|+
T Consensus       119 ~~~~~~~~~~~~ql~s~l~~~H~~--~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~  196 (601)
T KOG0590|consen  119 GTSSSSASRYLPQLNSGLSYLHPE--NGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYG  196 (601)
T ss_pred             CCCCcchhhhhhhhccCccccCcc--cccccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCC
Confidence            3667788899999999999999 7  6699999999999999999 999999999876           34577 99999


Q ss_pred             ccccCCC--C-----------chhhhhhhCCCCCCcchhhh
Q psy238          152 RQTYGRP--I-----------SGQYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~~~~--~-----------~~~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+...  +           ..+.-+++|..|+.......
T Consensus       197 a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~  237 (601)
T KOG0590|consen  197 APEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKD  237 (601)
T ss_pred             CcccccchhhcCCCcccccccccccccccCCCCcccccccc
Confidence            9997332  1           11466778888887555444

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.95  E-value=1.8e-09  Score=83.94  Aligned_cols=128  Identities=15%  Similarity=0.195  Sum_probs=86.9

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC--CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH--PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h--p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      +|..+++|........   .....+..|..++..+.+  .++.+++.+..... ..+..++||+|++|.++.+.+..   
T Consensus        21 ~g~~~ilK~~~~~~~~---~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~-~~~~~~~v~e~i~G~~l~~~~~~---   93 (223)
T cd05154          21 GGRRLVLRRPPPGALL---PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPS-VLGTPFYVMERVDGRVLRDRLLR---   93 (223)
T ss_pred             CCcceEEEeCCCcccC---cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCC-ccCCceEEEEEeCCEecCCCCCC---
Confidence            3678999987643111   134467889999988865  44566776655432 11346899999998877665421   


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCC----------------------------------------------------
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCS----------------------------------------------------  110 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~----------------------------------------------------  110 (218)
                        ..++......++.+++.+|..||+..                                                    
T Consensus        94 --~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (223)
T cd05154          94 --PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPAD  171 (223)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCC
Confidence              12555566666666666666666421                                                    


Q ss_pred             --CCcccCCCCCCcEEEec--CCcEEEeecCcccc
Q psy238          111 --PPIIHGNLTCDTIFIQH--NGLVKIGCDTYTHT  141 (218)
Q Consensus       111 --~~iiH~dlkp~NiLl~~--~~~~ki~dfg~~~~  141 (218)
                        ..++|+|+.|.|||++.  ++.+.|+||+.+..
T Consensus       172 ~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             CCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence              34689999999999998  67789999987664

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0606|consensus

Probab=98.92  E-value=7.6e-10  Score=100.53  Aligned_cols=79  Identities=22%  Similarity=0.257  Sum_probs=67.2

Q ss_pred             HHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------------------ccCCCccccccccc-
Q psy238          100 LSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------------------IENKKYLSATRQTY-  155 (218)
Q Consensus       100 ~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------------------~~~~~t~~y~aPE~-  155 (218)
                      +.+++|||+  .||+|||++|+|.||..-|++++.|||++..                       ...+||+.|.|||+ 
T Consensus       153 vla~Eylh~--ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVi  230 (1205)
T KOG0606|consen  153 VLAVEYLHS--YGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVI  230 (1205)
T ss_pred             hHHhHhhcc--CCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhh
Confidence            788999999  5599999999999999999999999998765                       34689999999997 


Q ss_pred             -----CCCCch------hhhhhhCCCCCCcchhhhh
Q psy238          156 -----GRPISG------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       156 -----~~~~~~------~~ei~tg~~p~~~~~~ee~  180 (218)
                           |.+++.      +|+.+-|..||.+...||.
T Consensus       231 lrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeel  266 (1205)
T KOG0606|consen  231 LRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEEL  266 (1205)
T ss_pred             hhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHH
Confidence                 334443      7999999999998855553

>PRK09902 hypothetical protein; Provisional

Probab=98.80  E-value=7.7e-08  Score=74.18  Aligned_cols=132  Identities=13%  Similarity=0.088  Sum_probs=91.4

Q ss_pred             CcEEEEEEeecc-cc-cccHHHHHHHHHHHHHhhcCCC--CcccceeeeeecCCCCCCeEEEEEeccCC-CCHHHHHHhh
Q psy238            6 GVEVVWNEVQFS-ER-KNFKAQEEKIQQVFENLTQLEH--PNIVKFHRYWTDTHNDKPRVIFITEYMSS-GSLKQFLKRT   80 (218)
Q Consensus         6 g~~vAvK~~~~~-~~-~~~~~~~~~~~~ei~~l~~l~h--p~iv~l~~~~~~~~~~~~~~~lv~e~~~~-~sL~~~l~~~   80 (218)
                      |..+-+|.-... .. ...+.....+.+|+..|..+..  ..++.+..+..........-+||++-++| .+|.+++...
T Consensus        41 g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~  120 (216)
T PRK09902         41 GKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQH  120 (216)
T ss_pred             CcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEEEEeCCCCccHHHHHhcC
Confidence            345777765411 00 0113355688999999888853  22555542222333334567899998743 5899988664


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc--EEEeecCcccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL--VKIGCDTYTHT  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~--~ki~dfg~~~~  141 (218)
                      .-  .+.+......++.+++..+.-||+  .|+.|+|+.+.|||++.++.  +.++||--++.
T Consensus       121 ~~--~~~~~~~k~~il~~va~~ia~LH~--~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        121 AV--SPYSDEVRQAMLKAVALAFKKMHS--VNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             Cc--CCcchHHHHHHHHHHHHHHHHHHH--CCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            32  345677778899999999999999  77999999999999986666  99999976654

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.70  E-value=1.5e-07  Score=73.00  Aligned_cols=66  Identities=18%  Similarity=0.333  Sum_probs=51.9

Q ss_pred             EEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccc
Q psy238           61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTH  140 (218)
Q Consensus        61 ~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~  140 (218)
                      .++||||++|..|.++..        ++.    .+...++.++.-||.  .|+.|+|++|.|++++.++ ++++||+...
T Consensus       118 ~~ll~EYIeG~~l~d~~~--------i~e----~~~~ki~~~ikqlH~--~G~~HGD~hpgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  118 YVLLMEYIEGVELNDIED--------IDE----DLAEKIVEAIKQLHK--HGFYHGDPHPGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             EEEEEEEecCeecccchh--------cCH----HHHHHHHHHHHHHHH--cCCccCCCCcCcEEEECCc-EEEEECcccc
Confidence            568999999988876543        332    234567788999999  7799999999999998655 8899998665


Q ss_pred             c
Q psy238          141 T  141 (218)
Q Consensus       141 ~  141 (218)
                      .
T Consensus       183 ~  183 (229)
T PF06176_consen  183 M  183 (229)
T ss_pred             c
Confidence            4

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.59  E-value=1.2e-07  Score=75.14  Aligned_cols=117  Identities=19%  Similarity=0.222  Sum_probs=77.9

Q ss_pred             CCCcEEEEEEeecccccccHH-------------------HHHHHHHHHHHhhcCCCC--cccceeeeeecCCCCCCeEE
Q psy238            4 EEGVEVVWNEVQFSERKNFKA-------------------QEEKIQQVFENLTQLEHP--NIVKFHRYWTDTHNDKPRVI   62 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~-------------------~~~~~~~ei~~l~~l~hp--~iv~l~~~~~~~~~~~~~~~   62 (218)
                      ..|..+|||.-... ..++..                   ....+.+|+++|+.+...  .++..+++-        +-.
T Consensus       113 ~~g~~~~vKfHR~G-rtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP~P~~~n--------RHa  183 (304)
T COG0478         113 PKGRKVAVKFHRLG-RTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVPKPIAWN--------RHA  183 (304)
T ss_pred             CCCCEEEEEEeecC-chhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCCCCccccc--------cce
Confidence            35888999865532 122111                   234567899999999755  577776553        358


Q ss_pred             EEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccc
Q psy238           63 FITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTH  140 (218)
Q Consensus        63 lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~  140 (218)
                      +|||+++|..|...-         +.....-.++..|+.-+.-+-.  .||||+|+.+-|||+++||.+.++||--+.
T Consensus       184 VvMe~ieG~eL~~~r---------~~~en~~~il~~il~~~~~~~~--~GiVHGDlSefNIlV~~dg~~~vIDwPQ~v  250 (304)
T COG0478         184 VVMEYIEGVELYRLR---------LDVENPDEILDKILEEVRKAYR--RGIVHGDLSEFNILVTEDGDIVVIDWPQAV  250 (304)
T ss_pred             eeeehcccceeeccc---------CcccCHHHHHHHHHHHHHHHHH--cCccccCCchheEEEecCCCEEEEeCcccc
Confidence            999999876664432         1122233344444444444446  569999999999999999999999995443

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.58  E-value=1.4e-07  Score=82.22  Aligned_cols=69  Identities=9%  Similarity=0.120  Sum_probs=50.1

Q ss_pred             EEEEEeccCCCCHHHHHHhhcccCCCCCH-----HHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEee
Q psy238           61 VIFITEYMSSGSLKQFLKRTKRNVKKLPL-----SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGC  135 (218)
Q Consensus        61 ~~lv~e~~~~~sL~~~l~~~~~~~~~~~~-----~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~d  135 (218)
                      -.++|||++|..+.++......   ..+.     ..+..++.|++       .  .|++|+|.+|.||+++.+|.+.+.|
T Consensus       241 ~VLtmE~i~Gi~i~d~~~l~~~---g~d~k~ia~~~~~~f~~q~~-------~--dgffHaDpHpGNi~v~~~g~i~~lD  308 (517)
T COG0661         241 RVLTMEWIDGIKISDIAALKSA---GIDRKELAELLVRAFLRQLL-------R--DGFFHADPHPGNILVRSDGRIVLLD  308 (517)
T ss_pred             cEEEEEeeCCEecccHHHHHhc---CCCHHHHHHHHHHHHHHHHH-------h--cCccccCCCccceEEecCCcEEEEc
Confidence            5899999999999888543321   1332     22223333332       2  5699999999999999999999999


Q ss_pred             cCcccc
Q psy238          136 DTYTHT  141 (218)
Q Consensus       136 fg~~~~  141 (218)
                      ||+...
T Consensus       309 fGi~g~  314 (517)
T COG0661         309 FGIVGR  314 (517)
T ss_pred             Ccceec
Confidence            998765

>KOG0601|consensus

Probab=98.55  E-value=8.8e-08  Score=82.60  Aligned_cols=126  Identities=19%  Similarity=0.108  Sum_probs=93.2

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..++..|++|.+...  .........-..|+.+...+ .|.+++.++..|....    ..|+-.|||.++++...+.-. 
T Consensus       288 ~~~~~~Y~~ke~~~~--l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r----~~~ip~e~~~~~s~~l~~~~~-  360 (524)
T KOG0601|consen  288 PEGDCIYAAKELLNG--LATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLR----QGYIPLEFCEGGSSSLRSVTS-  360 (524)
T ss_pred             CCCCceEeChhhhcc--ccchHhhhcchhhhhHhhHhhcccccCCCCCCccccc----cccCchhhhcCcchhhhhHHH-
Confidence            467788999877632  22222233334566665555 5888888766665533    367999999988877766322 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTH  140 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~  140 (218)
                         ..+.+...+.+..|++.++.++|+  ..++|+|++|+||++..+ +..++.|||...
T Consensus       361 ---~~~d~~~~~~~~~q~~~~l~~i~s--~~~~~~d~~psni~i~~~~~~~~~~~~~~~t  415 (524)
T KOG0601|consen  361 ---QMLDEDPRLRLTAQILTALNVIHS--KLFVHLDVKPSNILISNDGFFSKLGDFGCWT  415 (524)
T ss_pred             ---HhcCcchhhhhHHHHHhccccccc--hhhhcccccccceeeccchhhhhcccccccc
Confidence               237778889999999999999999  669999999999999876 888899999875

>KOG0601|consensus

Probab=98.49  E-value=1.3e-07  Score=81.60  Aligned_cols=143  Identities=18%  Similarity=0.150  Sum_probs=106.5

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      .+++..+|+|.-+..  ...+.....-.+++.....+ .|++.++.+..+...    +.+++-+|++ +.+|..+.....
T Consensus       140 ~~s~~~~a~k~s~~p--~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~----~~lfiqtE~~-~~sl~~~~~~~~  212 (524)
T KOG0601|consen  140 SESPHKFAVKKSKIP--FSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGS----GILFIQTELC-GESLQSYCHTPC  212 (524)
T ss_pred             ccCCcccccccccCC--CCCccccccccchhhcccccCccccccccCcccccC----Ccceeeeccc-cchhHHhhhccc
Confidence            467778888874321  22222333334566655666 589999876666554    4689999998 578888887653


Q ss_pred             ccCCCCCHHHHHHHHHHHHH----HHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc-------------cc
Q psy238           82 RNVKKLPLSAWKRWCSQILS----ALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT-------------IE  143 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~----~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~-------------~~  143 (218)
                         ..+|...++..+.+...    ||.++|+  .+++|-|++|.||++..+ ..++++|||+...             ..
T Consensus       213 ---~~~p~~~l~~~~~~~~~~~~~al~~~hs--~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r  287 (524)
T KOG0601|consen  213 ---NFLPDNLLWNSLRDWLSRDVTALSHLHS--NNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKR  287 (524)
T ss_pred             ---ccCCchhhhhHHhhhhhcccccccccCC--CcccccccchhheecccccceeecCCcceeEEccCCccccceeeeec
Confidence               34888899999999999    9999999  669999999999999999 8999999997654             12


Q ss_pred             CCCcccccccccCC
Q psy238          144 NKKYLSATRQTYGR  157 (218)
Q Consensus       144 ~~~t~~y~aPE~~~  157 (218)
                      ..+...|++||+..
T Consensus       288 ~~~~~~Y~~ke~~~  301 (524)
T KOG0601|consen  288 PEGDCIYAAKELLN  301 (524)
T ss_pred             CCCCceEeChhhhc
Confidence            26778899999733

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.39  E-value=3.3e-06  Score=66.39  Aligned_cols=125  Identities=10%  Similarity=0.077  Sum_probs=67.4

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCc--ccceeeeeecCCCCCCeEEEEEeccCCCC-HH--------
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPN--IVKFHRYWTDTHNDKPRVIFITEYMSSGS-LK--------   74 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~--iv~l~~~~~~~~~~~~~~~lv~e~~~~~s-L~--------   74 (218)
                      |..+++|.....      .....+.+|.+++..+..-+  +.+.+.+..+.+    ..++||++++|.+ +.        
T Consensus        22 ~~~~VlR~~~~~------~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~----~~glv~e~i~G~~~~~~~~~~~~~   91 (226)
T TIGR02172        22 TGKWMLKLYNPG------FDKETIKREFDASRKVFSLGIPTPHPFDLVEDGG----RLGLIYELIVGKRSFSRIISDNPS   91 (226)
T ss_pred             CCCEEEEeCCCC------CCHHHHHHHHHHHHHHHHcCCCCCceEEEEecCC----eeeeeeeecCCccchhhhhcCCHH
Confidence            456777877531      12234678888888875433  456666654433    4688999998753 11        


Q ss_pred             ------HHHHh----hcc-cCCCCCHHHHHH-HHH----------HHHH-HHHHhh--cCCCCcccCCCCCCcEEEecCC
Q psy238           75 ------QFLKR----TKR-NVKKLPLSAWKR-WCS----------QILS-ALSYLH--SCSPPIIHGNLTCDTIFIQHNG  129 (218)
Q Consensus        75 ------~~l~~----~~~-~~~~~~~~~~~~-~~~----------qi~~-~l~~lH--~~~~~iiH~dlkp~NiLl~~~~  129 (218)
                            ..+..    -.. .....+...... +..          .+.. ...+|.  .....++|+|+.|.||+++.++
T Consensus        92 ~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~~Nii~~~~~  171 (226)
T TIGR02172        92 RLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQIGNLITSGKG  171 (226)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCCCCcEEEcCCC
Confidence                  11111    000 000111111111 100          0111 111222  2113578999999999999888


Q ss_pred             cEEEeecCcccc
Q psy238          130 LVKIGCDTYTHT  141 (218)
Q Consensus       130 ~~ki~dfg~~~~  141 (218)
                       +.|+||+.+..
T Consensus       172 -~~iIDwe~a~~  182 (226)
T TIGR02172       172 -TYWIDLGDFGY  182 (226)
T ss_pred             -cEEEechhcCc
Confidence             99999987654

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.33  E-value=2.6e-06  Score=65.11  Aligned_cols=103  Identities=17%  Similarity=0.128  Sum_probs=76.8

Q ss_pred             HHHHHHhhcCCC-CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhc
Q psy238           30 QQVFENLTQLEH-PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHS  108 (218)
Q Consensus        30 ~~ei~~l~~l~h-p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  108 (218)
                      ..|.-+|+.+.+ +++++++|+|-.        ++|.|+...+++.... .........++..+..++.+++..+.++++
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG~--------~~v~E~~~~~~~~~~~-~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~   77 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCGR--------FYVVEYVGAGSLYGIY-RPLSQFLQSPWEQRAKIALQLLELLEELDH   77 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECCC--------EEEEEeecCccccccc-cccccccccCHHHHHHHHHHHHHHHHHHhc
Confidence            357777888865 699999999932        6788998766554320 000011237899999999999999999986


Q ss_pred             -CCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          109 -CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       109 -~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                       ....+.-+|++|+|+.+++++.++++|......
T Consensus        78 ~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~  111 (188)
T PF12260_consen   78 GPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFV  111 (188)
T ss_pred             CCCCcEEEeecchHHeEEeCCCcEEEEechhcch
Confidence             212356699999999999999999999886544

Proteins in this uncharacterised family are described as transmembrane proteins.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.27  E-value=7.5e-06  Score=64.46  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=64.7

Q ss_pred             HHHHHhhcCC--CCcccceeeeeecCCCCCCeEEEEEeccCCC-CHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhh
Q psy238           31 QVFENLTQLE--HPNIVKFHRYWTDTHNDKPRVIFITEYMSSG-SLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLH  107 (218)
Q Consensus        31 ~ei~~l~~l~--hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~-sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH  107 (218)
                      .|+..|.++.  +-.+++.+.+..        -.+||||+... .-.-.|...     ++....+..+..+++..+.-|-
T Consensus       117 kEf~NL~R~~eAGVrvP~Pi~~~~--------nVLvMEfIg~~g~pAP~LkDv-----~~e~~e~~~~~~~~v~~~~~l~  183 (268)
T COG1718         117 KEFRNLKRAYEAGVRVPEPIAFRN--------NVLVMEFIGDDGLPAPRLKDV-----PLELEEAEGLYEDVVEYMRRLY  183 (268)
T ss_pred             HHHHHHHHHHHcCCCCCCceeecC--------CeEEEEeccCCCCCCCCcccC-----CcCchhHHHHHHHHHHHHHHHH
Confidence            4666676663  344555555542        48999999432 111112111     1333367778888999888887


Q ss_pred             c-CCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          108 S-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       108 ~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      . ++  +||+||+.-|||+. ++.+.|+|++-+-.
T Consensus       184 ~~a~--LVHgDLSEyNiL~~-~~~p~iID~~QaV~  215 (268)
T COG1718         184 KEAG--LVHGDLSEYNILVH-DGEPYIIDVSQAVT  215 (268)
T ss_pred             HhcC--cccccchhhheEEE-CCeEEEEECccccc
Confidence            6 55  99999999999999 89999999987654

>KOG0606|consensus

Probab=98.24  E-value=7.5e-07  Score=81.61  Aligned_cols=114  Identities=16%  Similarity=0.149  Sum_probs=90.3

Q ss_pred             CeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCc
Q psy238           59 PRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTY  138 (218)
Q Consensus        59 ~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~  138 (218)
                      ...++|++|+.+++|...++..+    +.+..-++.++..++.++++||+  ..++|+|++|.|+|+..++...++||+.
T Consensus       877 sP~~L~~~~~~~~~~~Skl~~~~----~~saepaRs~i~~~vqs~e~L~s--~~r~h~~~~p~~~l~~~~gh~~l~~~~t  950 (1205)
T KOG0606|consen  877 SPLPLVGHYLNGGDLPSKLHNSG----CLSAEPARSPILERVQSLESLHS--SLRKHRDLKPDSLLIAYDGHRPLTDFGT  950 (1205)
T ss_pred             CCcchhhHHhccCCchhhhhcCC----CcccccccchhHHHHhhhhcccc--chhhcccccccchhhcccCCcccCcccc
Confidence            35899999999999999998764    36666778888899999999999  5599999999999999999999999872


Q ss_pred             ccc---------------------------------------ccCCCccccccccc--CC----CC------chhhhhhh
Q psy238          139 THT---------------------------------------IENKKYLSATRQTY--GR----PI------SGQYEIVT  167 (218)
Q Consensus       139 ~~~---------------------------------------~~~~~t~~y~aPE~--~~----~~------~~~~ei~t  167 (218)
                      ...                                       ....+|..|.+||.  +.    +.      ..+++.++
T Consensus       951 ~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~ 1030 (1205)
T KOG0606|consen  951 LSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLT 1030 (1205)
T ss_pred             ccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhc
Confidence            111                                       23567999999995  11    11      11789999


Q ss_pred             CCCCCCcchhh
Q psy238          168 KTNNVTEKKKE  178 (218)
Q Consensus       168 g~~p~~~~~~e  178 (218)
                      |..||+....+
T Consensus      1031 g~pp~na~tpq 1041 (1205)
T KOG0606|consen 1031 GIPPFNAETPQ 1041 (1205)
T ss_pred             CCCCCCCcchh
Confidence            99999865444

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.17  E-value=1.4e-05  Score=62.26  Aligned_cols=128  Identities=16%  Similarity=0.191  Sum_probs=66.2

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCC--cccceeeeeecCCCCCCeEEEEEeccCCCCHHH---------
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHP--NIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ---------   75 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp--~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~---------   75 (218)
                      ..+++|....      ......+..|..++..+...  .+..++.+.... ...+..+++|++++|.++..         
T Consensus        21 ~~~vlK~~~~------~~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~-~~~~~~~~~~~~i~g~~~~~~~~~~~~~~   93 (239)
T PF01636_consen   21 GRYVLKFYRP------PDAAERLRREAAVLRQLAEHGIPVPRVLAFDTSD-EFNGFPYLLMEYIPGRPLDDELSPEQRPE   93 (239)
T ss_dssp             SEEEEEEESS------HHHHHHHHHHHHHHHHHHHTTSBS--EEEEEEET-EETSEEEEEEEEESSEEHHHTSTHHHHHH
T ss_pred             cEEEEEEeCC------CCCHHHHHHHHHHHHHHHhcCCCCceEEeecccc-cccccceEEEEEecccccccccccccccc
Confidence            5889998762      13455667787777777422  356666544332 22345789999999887777         


Q ss_pred             -------HHHhhcc---cCCCCCHHH---------HHHH------------HHHHHH-HHHHhhc-----CCCCcccCCC
Q psy238           76 -------FLKRTKR---NVKKLPLSA---------WKRW------------CSQILS-ALSYLHS-----CSPPIIHGNL  118 (218)
Q Consensus        76 -------~l~~~~~---~~~~~~~~~---------~~~~------------~~qi~~-~l~~lH~-----~~~~iiH~dl  118 (218)
                             .+..-..   ...++....         ....            ...+.. .+..++.     ....++|+|+
T Consensus        94 ~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HgD~  173 (239)
T PF01636_consen   94 LLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALLPKPLPPVLIHGDL  173 (239)
T ss_dssp             HHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCSCEEEE-SS-
T ss_pred             ccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhhccCCCcEEEEecc
Confidence                   2222111   011111100         0000            001111 2233321     1145899999


Q ss_pred             CCCcEEEe-cCCcEEEeecCcccc
Q psy238          119 TCDTIFIQ-HNGLVKIGCDTYTHT  141 (218)
Q Consensus       119 kp~NiLl~-~~~~~ki~dfg~~~~  141 (218)
                      .|.|||++ .++.+.|+||+.+..
T Consensus       174 ~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  174 HPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             ccccceeeeccceeEEEecccceE
Confidence            99999999 566668999987654

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.05  E-value=5.4e-05  Score=60.00  Aligned_cols=31  Identities=10%  Similarity=0.009  Sum_probs=27.0

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..++|+|+.|.|||++.+..+.|+||+.+..
T Consensus       163 ~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~  193 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGKFSGFIDLGRLGV  193 (244)
T ss_pred             eEEECCCCCCccEEEeCCcEEEEEEcccccc
Confidence            3489999999999999988888999987754

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.96  E-value=8.2e-05  Score=62.83  Aligned_cols=114  Identities=10%  Similarity=0.074  Sum_probs=84.0

Q ss_pred             eEEEEEeccCCC-CHHHHHHhh--cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeec
Q psy238           60 RVIFITEYMSSG-SLKQFLKRT--KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD  136 (218)
Q Consensus        60 ~~~lv~e~~~~~-sL~~~l~~~--~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~df  136 (218)
                      .+.++|..++|. .+.+++...  +..+..+.++.+++.++.++.+..-||.  .|-+-+|+.++|+|+++++.+.|+|-
T Consensus        84 ~iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~--~Gh~vGDVn~~~~lVsd~~~V~LVds  161 (637)
T COG4248          84 VIGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHE--HGHVVGDVNQNSFLVSDDSKVVLVDS  161 (637)
T ss_pred             eeEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHh--cCCcccccCccceeeecCceEEEEcc
Confidence            477889988764 333333322  1233457889999999999999999999  77999999999999999999999885


Q ss_pred             Ccccc-------ccCCCcccccccccCCCCch-----------------hhhhhhC-CCCCCcc
Q psy238          137 TYTHT-------IENKKYLSATRQTYGRPISG-----------------QYEIVTK-TNNVTEK  175 (218)
Q Consensus       137 g~~~~-------~~~~~t~~y~aPE~~~~~~~-----------------~~ei~tg-~~p~~~~  175 (218)
                      ..-..       ....|...|.+||+-...+.                 .++++.| +.||.+.
T Consensus       162 Dsfqi~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI  225 (637)
T COG4248         162 DSFQINANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGI  225 (637)
T ss_pred             cceeeccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcc
Confidence            43222       45678899999997331111                 5777666 9999764

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.94  E-value=7.8e-05  Score=58.83  Aligned_cols=31  Identities=19%  Similarity=0.233  Sum_probs=26.1

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.|.|||++.+...-|+||+.+..
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~  194 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLGV  194 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccCc
Confidence            3489999999999998776677999997654

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PLN02876 acyl-CoA dehydrogenase

Probab=97.92  E-value=4.2e-05  Score=71.02  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=39.3

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCc--ccceeeeeecCCCCCCeEEEEEeccCCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPN--IVKFHRYWTDTHNDKPRVIFITEYMSSGS   72 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~--iv~l~~~~~~~~~~~~~~~lv~e~~~~~s   72 (218)
                      ..+++++......   ......+.+|+.+|..+. |++  +++++.++.+... .+..|+||||++|..
T Consensus        66 ~~~VLR~~p~~~~---~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v-~G~~flVME~v~G~~  130 (822)
T PLN02876         66 KRYVLRKKPPGKL---LQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASV-IGTAFYIMEYLEGRI  130 (822)
T ss_pred             eeEEEEeCCCCcc---CccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCc-CCCceEEEEecCCcc
Confidence            3577776653211   112346778999999885 565  4777777765321 234689999998754

>KOG2270|consensus

Probab=97.72  E-value=0.00028  Score=58.92  Aligned_cols=121  Identities=19%  Similarity=0.210  Sum_probs=78.8

Q ss_pred             CCCCcEEEEEEeecccc--------------------cccHHHHHHH--HHHHHHhhcCCCCcccceeeeeecCCCCCCe
Q psy238            3 TEEGVEVVWNEVQFSER--------------------KNFKAQEEKI--QQVFENLTQLEHPNIVKFHRYWTDTHNDKPR   60 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~--------------------~~~~~~~~~~--~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~   60 (218)
                      ..+|..+|||+++-+=.                    ...+..+-..  ..|+..|.+++..+|.-.--+....      
T Consensus       165 ~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~aGIP~PePIlLk~------  238 (520)
T KOG2270|consen  165 EEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNAGIPCPEPILLKN------  238 (520)
T ss_pred             cCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeec------
Confidence            35788999999883210                    1111112222  3467777777766654433333321      


Q ss_pred             EEEEEeccCCCCHHH--HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecC
Q psy238           61 VIFITEYMSSGSLKQ--FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDT  137 (218)
Q Consensus        61 ~~lv~e~~~~~sL~~--~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg  137 (218)
                      -.|||+|+. .+-+.  .|..     -.++...+..+-.|++.-+.-|.. |.  +||.||.--|+|+ .+|.+.|+|-+
T Consensus       239 hVLVM~FlG-rdgw~aPkLKd-----~~ls~~ka~~~Y~~~v~~MR~lY~~c~--LVHADLSEfN~Ly-hdG~lyiIDVS  309 (520)
T KOG2270|consen  239 HVLVMEFLG-RDGWAAPKLKD-----ASLSTSKARELYQQCVRIMRRLYQKCR--LVHADLSEFNLLY-HDGKLYIIDVS  309 (520)
T ss_pred             ceEeeeecc-CCCCcCccccc-----ccCChHHHHHHHHHHHHHHHHHHHHhc--eeccchhhhhheE-ECCEEEEEEcc
Confidence            379999993 33322  2222     236777888888899999998876 77  9999999999998 45788898866


Q ss_pred             c
Q psy238          138 Y  138 (218)
Q Consensus       138 ~  138 (218)
                      -
T Consensus       310 Q  310 (520)
T KOG2270|consen  310 Q  310 (520)
T ss_pred             c
Confidence            3

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.71  E-value=0.00012  Score=58.57  Aligned_cols=29  Identities=14%  Similarity=0.233  Sum_probs=25.3

Q ss_pred             CcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          112 PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .++|+|+.|.|||++.++ +.|+||..+..
T Consensus       147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             eeecCCCCcCcEEEeCCC-CEEEeccccCc
Confidence            489999999999999877 78999987664

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>KOG1235|consensus

Probab=97.69  E-value=0.00032  Score=61.47  Aligned_cols=74  Identities=7%  Similarity=0.050  Sum_probs=50.3

Q ss_pred             EEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec----CCcEEEeec
Q psy238           61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH----NGLVKIGCD  136 (218)
Q Consensus        61 ~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~----~~~~ki~df  136 (218)
                      -.|+||||+|..+.++-.-..   ..++...+...+.++..-+-+.    .|++|+|-+|.||++..    ++.+.+.||
T Consensus       277 RVLtME~~~G~~i~Dl~~i~~---~gi~~~~i~~~l~~~~~~qIf~----~GffHaDPHPGNilv~~~~~~~~~ivllDh  349 (538)
T KOG1235|consen  277 RVLTMEYVDGIKINDLDAIDK---RGISPHDILNKLVEAYLEQIFK----TGFFHADPHPGNILVRPNPEGDEEIVLLDH  349 (538)
T ss_pred             eEEEEEecCCccCCCHHHHHH---cCCCHHHHHHHHHHHHHHHHHh----cCCccCCCCCCcEEEecCCCCCccEEEEcc
Confidence            689999999987766533222   1255554444333333222222    55999999999999984    689999999


Q ss_pred             Ccccc
Q psy238          137 TYTHT  141 (218)
Q Consensus       137 g~~~~  141 (218)
                      |+...
T Consensus       350 Gl~~~  354 (538)
T KOG1235|consen  350 GLYAV  354 (538)
T ss_pred             ccccc
Confidence            98765

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=97.64  E-value=0.00015  Score=60.33  Aligned_cols=84  Identities=18%  Similarity=0.114  Sum_probs=62.5

Q ss_pred             CCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEee
Q psy238           56 NDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGC  135 (218)
Q Consensus        56 ~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~d  135 (218)
                      .+..+.|++|++- |++|.. +..       -...++..++.+.+..+.-+... -..-|||+.-.||||+ +|++.|+|
T Consensus       296 de~~y~yl~~kdh-gt~is~-ik~-------~~~~e~lsff~s~~sil~~lekk-f~fehrnlt~~niLId-~GnvtLID  364 (488)
T COG5072         296 DETLYLYLHFKDH-GTPISI-IKA-------DRSEEELSFFWSCISILDILEKK-FPFEHRNLTLDNILID-EGNVTLID  364 (488)
T ss_pred             CCceEEEEEEecC-Cceeee-eec-------ccHHHHHHHHHHHHHHHhhhhhc-CCcccccccccceeee-cCceEEEE
Confidence            3345778899885 555543 221       34578888999988877777762 3489999999999999 99999999


Q ss_pred             cCccccccCCCcccc
Q psy238          136 DTYTHTIENKKYLSA  150 (218)
Q Consensus       136 fg~~~~~~~~~t~~y  150 (218)
                      |.+++.....+...|
T Consensus       365 fklsRl~~~q~~isy  379 (488)
T COG5072         365 FKLSRLSYSQGIISY  379 (488)
T ss_pred             eeeeecccCCceeec
Confidence            999987555554444

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.59  E-value=0.0017  Score=49.95  Aligned_cols=94  Identities=18%  Similarity=0.272  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhhcC------CCCcccceeeeeecCCCCCCeEEEEEeccC------CCCHHHHHHhhcccCCCCCHHHHHH
Q psy238           27 EKIQQVFENLTQL------EHPNIVKFHRYWTDTHNDKPRVIFITEYMS------SGSLKQFLKRTKRNVKKLPLSAWKR   94 (218)
Q Consensus        27 ~~~~~ei~~l~~l------~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~------~~sL~~~l~~~~~~~~~~~~~~~~~   94 (218)
                      ....+|+.-...+      .+.+|.+++|+...+..    ..+|+|.+.      ..||.+++...     .++. ....
T Consensus        56 ~~~~~E~~~y~~l~~~~~~~~~~i~r~~G~veT~~G----~Glv~e~I~d~dG~~s~TL~~~l~~~-----~~~~-~~~~  125 (199)
T PF10707_consen   56 RQNRRELRYYKQLSLRRGVDWSHIPRFYGFVETNLG----LGLVVELIRDADGNISPTLEDYLKEG-----GLTE-ELRQ  125 (199)
T ss_pred             HHHHHHHHHHHHHhhccCCcccccccEeEEEecCCc----eEEEEEEEECCCCCcCccHHHHHHcC-----CccH-HHHH
Confidence            3444555443333      47889999999876542    567777652      24788888543     2554 3333


Q ss_pred             HHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC--C--cEEEee
Q psy238           95 WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN--G--LVKIGC  135 (218)
Q Consensus        95 ~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~--~--~~ki~d  135 (218)
                      .+.++   ..||-+  .+|+.+|++|.||++...  +  .+.|+|
T Consensus       126 ~L~~f---~~~l~~--~~Iv~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  126 ALDEF---KRYLLD--HHIVIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             HHHHH---HHHHHH--cCCeecCCCcccEEEEecCCCceEEEEEe
Confidence            33333   456666  669999999999999643  2  577777

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG2268|consensus

Probab=97.56  E-value=0.00012  Score=60.14  Aligned_cols=94  Identities=13%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             HHHHHHHHhhcCCC--CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Q psy238           28 KIQQVFENLTQLEH--PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSY  105 (218)
Q Consensus        28 ~~~~ei~~l~~l~h--p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~  105 (218)
                      .+.+|+..|+.+..  -.++..+++.        +-|+||+++.|.+|....+-.       +.++   +...+..-+--
T Consensus       156 aa~kEfafmkaL~e~gfpVPkpiD~~--------RH~Vvmelv~g~Pl~~v~~v~-------d~~~---ly~~lm~~Iv~  217 (465)
T KOG2268|consen  156 AATKEFAFMKALYERGFPVPKPIDHN--------RHCVVMELVDGYPLRQVRHVE-------DPPT---LYDDLMGLIVR  217 (465)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCccccc--------ceeeHHHhhcccceeeeeecC-------ChHH---HHHHHHHHHHH
Confidence            45678888888853  3355555544        459999999988887655322       2222   22333334555


Q ss_pred             hhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          106 LHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       106 lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      |..  +|+||+|+.--||++.+++.+.++||--+-+
T Consensus       218 la~--~GlIHgDFNEFNimv~dd~~i~vIDFPQmvS  251 (465)
T KOG2268|consen  218 LAN--HGLIHGDFNEFNIMVKDDDKIVVIDFPQMVS  251 (465)
T ss_pred             HHH--cCceecccchheeEEecCCCEEEeechHhhc
Confidence            667  7799999999999999999999999975433

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.40  E-value=0.00049  Score=56.07  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=27.4

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.|.|||++.++.+.|+||+.+..
T Consensus       175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         175 RGVIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             CcCCccCcCcccEEEeCCceEEEeehhhhcC
Confidence            4699999999999999988788999987765

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=97.33  E-value=0.002  Score=53.07  Aligned_cols=31  Identities=13%  Similarity=0.180  Sum_probs=28.0

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..++|+|+.+.|++++.+.-+=|.||+.+..
T Consensus       198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~l  228 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATL  228 (321)
T ss_pred             ceeeeCCcccCCEEEeCCCeeEEEecccccc
Confidence            4589999999999999988899999998876

>PRK05231 homoserine kinase; Provisional

Probab=97.26  E-value=0.0095  Score=49.10  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=27.1

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.|.|||++.+...-|+||+.+..
T Consensus       187 ~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        187 RGVIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             cccCCCCCCCCcEEEECCceEEEEecccccC
Confidence            5799999999999999776668999998765

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.26  E-value=0.002  Score=52.72  Aligned_cols=31  Identities=13%  Similarity=0.085  Sum_probs=27.4

Q ss_pred             CCcccCCCCCCcEEEecC----CcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHN----GLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~----~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.|.|||++.+    +.+.++||..+..
T Consensus       179 ~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~  213 (302)
T cd05156         179 VVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASY  213 (302)
T ss_pred             ceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCC
Confidence            458999999999999875    8899999998875

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>KOG2137|consensus

Probab=97.18  E-value=0.00022  Score=63.28  Aligned_cols=67  Identities=18%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------------cCCCcccccc
Q psy238           90 SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------------ENKKYLSATR  152 (218)
Q Consensus        90 ~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------------~~~~t~~y~a  152 (218)
                      +....=+.+++.|+.|+|.. .++||++|.|++|.++..+.++|+.|+++...                 -......|.|
T Consensus        99 e~~f~nl~~v~dgl~flh~s-Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~a  177 (700)
T KOG2137|consen   99 EDGFANLGNVADGLAFLHRS-AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLA  177 (700)
T ss_pred             cHhhhhhhcccchhhhhccC-cceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCccccc
Confidence            33444556788999999983 45999999999999999999999999977541                 1234577899


Q ss_pred             cccCC
Q psy238          153 QTYGR  157 (218)
Q Consensus       153 PE~~~  157 (218)
                      ||+..
T Consensus       178 pE~~~  182 (700)
T KOG2137|consen  178 PEYLL  182 (700)
T ss_pred             chhhc
Confidence            99743

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.10  E-value=0.003  Score=51.19  Aligned_cols=31  Identities=19%  Similarity=0.228  Sum_probs=25.7

Q ss_pred             CCcccCCCCCCcEEEecCCc-EEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGL-VKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~-~ki~dfg~~~~  141 (218)
                      ..++|+|+.|.|||++.++. .-|+||+.+..
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            34899999999999997554 56999998776

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PRK10593 hypothetical protein; Provisional

Probab=97.02  E-value=0.0069  Score=49.66  Aligned_cols=46  Identities=15%  Similarity=0.062  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhcCCC---CcccceeeeeecCCCCCCeEEEEEeccCCCCH
Q psy238           27 EKIQQVFENLTQLEH---PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSL   73 (218)
Q Consensus        27 ~~~~~ei~~l~~l~h---p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL   73 (218)
                      ..+..|...|..+..   ..++++++++.+.. ..+..++|||+++|.++
T Consensus        52 ~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~-~~g~~~LVmE~i~G~~~  100 (297)
T PRK10593         52 GVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQ-SPGPDVLLLERLRGVSV  100 (297)
T ss_pred             hHHHHHHHHHHHHccCCCCCcCcEEEEeccCC-cCCCeEEEEeccCCEec
Confidence            467788888887742   45778887775432 12357999999987654

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.02  E-value=0.005  Score=46.38  Aligned_cols=111  Identities=15%  Similarity=0.044  Sum_probs=73.8

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccc-eeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVK-FHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~-l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      +.|..+|+|+-..      ......+..|.++|..+...++.+ ++.+..        .++.|+|+.|.+|..+....  
T Consensus        43 ~~~~~~a~Kvrr~------ds~r~~l~kEakiLeil~g~~~~p~vy~yg~--------~~i~me~i~G~~L~~~~~~~--  106 (201)
T COG2112          43 WRGGEVALKVRRR------DSPRRNLEKEAKILEILAGEGVTPEVYFYGE--------DFIRMEYIDGRPLGKLEIGG--  106 (201)
T ss_pred             ccCceEEEEEecC------CcchhhHHHHHHHHHHhhhcCCCceEEEech--------hhhhhhhhcCcchhhhhhcc--
Confidence            4677899998763      234567888999999887666544 444433        35669999988888876521  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCC-CCcEEEecCCcEEEeecCcccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLT-CDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlk-p~NiLl~~~~~~ki~dfg~~~~  141 (218)
                           +..    -+..++..-.-|-.  .||-|..|+ |..+++..+..+.|+||.-++.
T Consensus       107 -----~rk----~l~~vlE~a~~LD~--~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112         107 -----DRK----HLLRVLEKAYKLDR--LGIEHGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             -----cHH----HHHHHHHHHHHHHH--hccchhhhcCCceeEEecCCcEEEEEccchhh
Confidence                 112    23344555333444  459998886 5556666666999999987764

>PRK06148 hypothetical protein; Provisional

Probab=96.95  E-value=0.031  Score=53.42  Aligned_cols=31  Identities=10%  Similarity=0.079  Sum_probs=26.3

Q ss_pred             CCcccCCCCCCcEEEecCC--cEE-EeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNG--LVK-IGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~--~~k-i~dfg~~~~  141 (218)
                      .++||+|+.+.|||++.++  .+. |+|||.+..
T Consensus       203 ~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~  236 (1013)
T PRK06148        203 AQVIHNDANDYNILVDADDGERISGLIDFGDAVH  236 (1013)
T ss_pred             cceECCCCCcccEEEcCCCCcceEEEEECccccc
Confidence            5699999999999998875  455 999998765

>PLN02236 choline kinase

Probab=96.90  E-value=0.0049  Score=51.61  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=26.3

Q ss_pred             CcccCCCCCCcEEEec-CCcEEEeecCcccc
Q psy238          112 PIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT  141 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~  141 (218)
                      .++|+|+.+.|||++. ++.+.++||..+..
T Consensus       201 ~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~  231 (344)
T PLN02236        201 GFCHNDLQYGNIMIDEETRAITIIDYEYASY  231 (344)
T ss_pred             eEEeCCCCcCcEEEeCCCCcEEEEeehhccc
Confidence            5899999999999986 47899999988765

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=96.90  E-value=0.021  Score=48.76  Aligned_cols=29  Identities=21%  Similarity=0.472  Sum_probs=24.4

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTH  140 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~  140 (218)
                      ..++|+|+.|.|||+..+ .++++||-++.
T Consensus       223 ~~l~HgDl~~gni~~~~~-~~~viD~E~a~  251 (401)
T PRK09550        223 EALLHGDLHTGSIFVTEE-ETKVIDPEFAF  251 (401)
T ss_pred             CceeeccCCcccEEeeCC-CcEEEeccccc
Confidence            458999999999999776 58899987655

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=96.82  E-value=0.0033  Score=49.16  Aligned_cols=85  Identities=15%  Similarity=0.218  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhh
Q psy238           28 KIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLH  107 (218)
Q Consensus        28 ~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH  107 (218)
                      -+..+..++.+++  +|+++..   +   +...+.+++|+|-....             .    ...++.-=+.+|.-.|
T Consensus       104 ~y~nky~v~Armh--GilrL~N---D---n~~~yGvIlE~Cy~~~i-------------~----~~N~i~agi~~L~~fH  158 (308)
T PF07387_consen  104 LYFNKYRVFARMH--GILRLKN---D---NNYKYGVILERCYKIKI-------------N----FSNFITAGIKDLMDFH  158 (308)
T ss_pred             hhhhhhhHHHHhh--heeEeec---C---CCceeEEEEeeccCccc-------------c----hhHHHHHhHHHHHHhh
Confidence            3456677777776  5777752   2   23457799999832110             0    1111112245677889


Q ss_pred             cCCCCcccCCCCCCcEEEecCCcEEEeecC
Q psy238          108 SCSPPIIHGNLTCDTIFIQHNGLVKIGCDT  137 (218)
Q Consensus       108 ~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg  137 (218)
                      +.+.+.+|+|..|+||+-|..|.+||.|-+
T Consensus       159 ~~~~~~lHGD~np~NiM~D~~G~lKlVDP~  188 (308)
T PF07387_consen  159 SENQHCLHGDCNPDNIMCDKFGYLKLVDPV  188 (308)
T ss_pred             ccCCCeecCCCChhheeecCCCCEEecChh
Confidence            754679999999999999999999999966

The function of this family is unknown.

>KOG0576|consensus

Probab=96.70  E-value=0.00081  Score=59.62  Aligned_cols=114  Identities=15%  Similarity=0.087  Sum_probs=74.8

Q ss_pred             HHHHHHHHhhcCCCCc-ccceeeeeecCCCCCCeEEEEEeccCCC-CHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Q psy238           28 KIQQVFENLTQLEHPN-IVKFHRYWTDTHNDKPRVIFITEYMSSG-SLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSY  105 (218)
Q Consensus        28 ~~~~ei~~l~~l~hp~-iv~l~~~~~~~~~~~~~~~lv~e~~~~~-sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~  105 (218)
                      ...-++++|.+++||| .+..++.+.    ...+.+++++++.++ +.........   -.+.......+.+.-+.++++
T Consensus       279 ~~rl~~eLLdK~n~P~~~v~~~~d~~----~E~~~~i~~~i~s~~rs~~~~~~~se---~~~~~~~~~~~~r~et~~l~~  351 (829)
T KOG0576|consen  279 SRRLAIELLDKVNNPNPVVRYLEDYD----GEDYLWIPMRICSTGRSSALEMTVSE---IALEQYQFAYPLRKETRPLAE  351 (829)
T ss_pred             hhHHHHHHHHHccCCCCcccccccCC----cccccchhhhhhcCCccccccCChhh---Hhhhhhhhhhhhhhhcccccc
Confidence            3445688899999999 555544432    234688999999765 2211111100   113333444556667889999


Q ss_pred             hhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccccc
Q psy238          106 LHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQTY  155 (218)
Q Consensus       106 lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE~  155 (218)
                      +|+.  .=+|+|    ||+..+ +..+..+|+....       .+..++..++|||+
T Consensus       352 l~~~--~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev  401 (829)
T KOG0576|consen  352 LHSS--YKVHRD----NILGSE-EEVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEV  401 (829)
T ss_pred             cccc--cccCcc----cccccc-cccccccccCCcccCcccccccCCCCCCCCCchh
Confidence            9993  258888    777644 6778888886654       56788999999995

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=96.59  E-value=0.0015  Score=59.56  Aligned_cols=65  Identities=6%  Similarity=-0.022  Sum_probs=45.8

Q ss_pred             ccCCCCCC-cEEEecCCcEEEeecCcccc----------ccCCCccccccccc--CCCCch----------hhhhhhCCC
Q psy238          114 IHGNLTCD-TIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY--GRPISG----------QYEIVTKTN  170 (218)
Q Consensus       114 iH~dlkp~-NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~  170 (218)
                      .+++..|. |+++..++...+.|||.+..          ....||+.|+|||+  +..++.          +||+++|..
T Consensus       499 ~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~  578 (669)
T cd05610         499 PTQKPRPHGNLYQTPKQVKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIP  578 (669)
T ss_pred             CCCCCCCCCceeECCccccccccCCCchhhhcccccccCCceeeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence            45666666 56666667777888886544          23478999999996  333332          799999999


Q ss_pred             CCCcchhh
Q psy238          171 NVTEKKKE  178 (218)
Q Consensus       171 p~~~~~~e  178 (218)
                      ||.+....
T Consensus       579 pf~~~~~~  586 (669)
T cd05610         579 PFNDETPQ  586 (669)
T ss_pred             CCCCCCHH
Confidence            99865443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PLN02756 S-methyl-5-thioribose kinase

Probab=96.53  E-value=0.024  Score=48.46  Aligned_cols=28  Identities=11%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYT  139 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~  139 (218)
                      ..++|+||.|.|||+..++ .+++|.-++
T Consensus       230 ~~L~HGDl~~g~i~~~~~~-~~~id~ef~  257 (418)
T PLN02756        230 QALVHGDLHTGSVMVTPDS-TQVIDPEFA  257 (418)
T ss_pred             cceeecCCCCCcEEEcCCC-ceEecchhh
Confidence            4589999999999998876 777775543

>KOG1236|consensus

Probab=96.11  E-value=0.042  Score=46.87  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=44.5

Q ss_pred             EEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec
Q psy238           62 IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH  127 (218)
Q Consensus        62 ~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~  127 (218)
                      .++=+|..|.++..++...     ..|+.....++.-.+.|+..|--. .+++|.|++|.||++--
T Consensus       321 vl~E~~~~Gl~v~~~v~~~-----~~pe~l~kkva~lg~~AllkMl~v-DNFvHaDlHPGNVlirf  380 (565)
T KOG1236|consen  321 VLVETYERGLSVLRFVKWK-----SQPEALVKKVAKLGVNALLKMLIV-DNFVHADLHPGNVLIRF  380 (565)
T ss_pred             eeeeeccccccHHhhhhcc-----cChHHHHHHHHHHHHHHHHHHHHh-hcceecccCCCcEEEEe
Confidence            4555677788888888653     356667777777777777776553 45999999999999953

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=96.08  E-value=0.053  Score=41.83  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhhcC---CCCcc--cceeeeeecCC--------------CCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238           25 QEEKIQQVFENLTQL---EHPNI--VKFHRYWTDTH--------------NDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus        25 ~~~~~~~ei~~l~~l---~hp~i--v~l~~~~~~~~--------------~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      ....|..|-+...++   .+.++  |+++||..-..              .......||.||++...             
T Consensus        97 y~~PF~~ECRAfgRLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-------------  163 (207)
T PF13095_consen   97 YADPFNCECRAFGRLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-------------  163 (207)
T ss_pred             hcChHHHHHHhhHHHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-------------
Confidence            334566777766665   45566  88999874431              12234568999886533             


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYT  139 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~  139 (218)
                      .+...    -+.+|++-|..+|.  .||+-+|+++.|..     .-+|+|||.+
T Consensus       164 ~~~~~----~~~~~~~dl~~~~k--~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  164 PLQIR----DIPQMLRDLKILHK--LGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             ccchh----HHHHHHHHHHHHHH--CCeeeccCcccccc-----CCEEEecccC
Confidence            12222    34567777888999  55999999999987     3578899864

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=95.78  E-value=0.029  Score=45.38  Aligned_cols=47  Identities=13%  Similarity=0.052  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           95 WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        95 ~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+..+-.++.-++..-.-++|+|+.|.|+|.++.+.++|+||-.+..
T Consensus       137 ~~~~l~~~l~~~~~~~~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~  183 (269)
T COG0510         137 KLKELRRALEEVPKDDLVPCHNDLNPGNLLLTDKGGLFLIDWEYAGL  183 (269)
T ss_pred             HHHHHHHHhhhcCCCceeeecCCCCccceEEcCCCcEEEEecccCCC
Confidence            33444444444444101389999999999999999999999987765

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=95.63  E-value=0.09  Score=44.26  Aligned_cols=29  Identities=21%  Similarity=0.505  Sum_probs=23.8

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTH  140 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~  140 (218)
                      ..++|+||.|.||++++++ ++++|+.++.
T Consensus       192 ~~llHGDl~~gNi~~~~~~-~~~iD~e~~~  220 (370)
T TIGR01767       192 ETLLHGDLHSGSIFVSEHE-TKVIDPEFAF  220 (370)
T ss_pred             ceeeeccCCcccEEEcCCC-CEEEcCcccc
Confidence            4589999999999997765 7799987554

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=95.63  E-value=0.023  Score=44.57  Aligned_cols=31  Identities=19%  Similarity=0.154  Sum_probs=26.8

Q ss_pred             CCcccCCCCCCcEEEec-CCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.|.|||++. ++.+.++||..+..
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~  201 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGY  201 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCCc
Confidence            35899999999999998 57899999987664

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=95.59  E-value=0.026  Score=46.36  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=27.9

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.+.||+++.++.+.|+||+.+..
T Consensus       187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~  217 (307)
T TIGR00938       187 RGVIHADLFPDNVLFDGDSVKGVIDFYFACT  217 (307)
T ss_pred             CccCCCCCCcCcEEEECCceEEEeecccccC
Confidence            5699999999999999988788999998765

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat

Probab=95.49  E-value=0.016  Score=49.77  Aligned_cols=28  Identities=21%  Similarity=0.255  Sum_probs=21.0

Q ss_pred             CcccCCCCCCcEEEecCC-----cEEEeecCcc
Q psy238          112 PIIHGNLTCDTIFIQHNG-----LVKIGCDTYT  139 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~~~-----~~ki~dfg~~  139 (218)
                      -++|+||.+.|||.+.+.     ...|+||-.+
T Consensus       269 VL~HGDLw~~NiLw~k~~~g~~~l~AIIDwQ~v  301 (414)
T PF07914_consen  269 VLVHGDLWSSNILWDKDSDGKLKLKAIIDWQCV  301 (414)
T ss_pred             ceecCCccHHheeeecCCchhHHHHHHHHHHHh
Confidence            478999999999998743     3457776543

In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=95.46  E-value=0.1  Score=42.57  Aligned_cols=26  Identities=15%  Similarity=0.230  Sum_probs=18.6

Q ss_pred             CcccCCCCCCcEEEecCCcEEEeecC
Q psy238          112 PIIHGNLTCDTIFIQHNGLVKIGCDT  137 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~~~~~ki~dfg  137 (218)
                      -++|+||-+.|++++.+|.+.|.|-.
T Consensus       189 sLlHGDLW~GN~~~~~~g~p~l~DPa  214 (288)
T PF03881_consen  189 SLLHGDLWSGNVGFDADGEPVLFDPA  214 (288)
T ss_dssp             EEE-SS-SGGGEEEETTE-EEE-S--
T ss_pred             eeeEcCccccceeecCCCCceeeccc
Confidence            48999999999999999989999854

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>KOG1035|consensus

Probab=95.37  E-value=0.033  Score=52.90  Aligned_cols=110  Identities=20%  Similarity=0.282  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Q psy238           26 EEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSY  105 (218)
Q Consensus        26 ~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~  105 (218)
                      ......|+..+..+.|+|++.++.+....-..+-.+.+..++++.-++...+..-.    ..+..+++.+..+++.||.|
T Consensus       226 i~~~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~----~i~~~~~r~~~~~~~~GL~~  301 (1351)
T KOG1035|consen  226 IQTTEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVG----SIPLETLRILHQKLLEGLAY  301 (1351)
T ss_pred             HHHHHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhcc----ccCHHHHHHHHHHHhhhHHH
Confidence            34445567778888999999998886654321112334557788888888888653    48999999999999999999


Q ss_pred             hhcCCCCcccCCCCCC---cEEEecCCcEEEe--ecCcccc
Q psy238          106 LHSCSPPIIHGNLTCD---TIFIQHNGLVKIG--CDTYTHT  141 (218)
Q Consensus       106 lH~~~~~iiH~dlkp~---NiLl~~~~~~ki~--dfg~~~~  141 (218)
                      +|+  ....|.-|..+   +.-++.++.+.+.  ||+.+..
T Consensus       302 ~h~--~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~  340 (1351)
T KOG1035|consen  302 LHS--LSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKP  340 (1351)
T ss_pred             HHH--hccceeEEecccccccccCccceeecchhhhccccc
Confidence            999  43555544444   3333445555555  7776654

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=95.36  E-value=0.045  Score=44.79  Aligned_cols=30  Identities=13%  Similarity=0.141  Sum_probs=25.8

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.+.|||++. +.+.|+||+.+..
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~~  216 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCTI  216 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECccccc
Confidence            46899999999999987 6688999997654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PRK10271 thiK thiamine kinase; Provisional

Probab=95.14  E-value=0.021  Score=43.46  Aligned_cols=29  Identities=10%  Similarity=0.194  Sum_probs=25.3

Q ss_pred             CcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          112 PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..+|+|+.|.||++.+++ ++++||+.+..
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCcccC
Confidence            368999999999998877 88999998765

>PTZ00384 choline kinase; Provisional

Probab=94.66  E-value=0.22  Score=42.44  Aligned_cols=29  Identities=10%  Similarity=-0.055  Sum_probs=24.1

Q ss_pred             CcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          112 PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..+|.|+.+.|||.+. ..+.++||-.|..
T Consensus       228 VfCHNDL~~gNIL~~~-~~l~lID~EYA~~  256 (383)
T PTZ00384        228 LFCHNDLFFTNILDFN-QGIYFIDFDFAGF  256 (383)
T ss_pred             eeeeccCCcccEEecC-CCEEEEEeccccC
Confidence            4689999999999754 5699999988765

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=94.30  E-value=0.057  Score=41.71  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             CcccCCCCCCcEEE-ecCCcEEEeecCcccc
Q psy238          112 PIIHGNLTCDTIFI-QHNGLVKIGCDTYTHT  141 (218)
Q Consensus       112 ~iiH~dlkp~NiLl-~~~~~~ki~dfg~~~~  141 (218)
                      .+.|.|+.|.|||+ ..++.++++||..+..
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            47899999999999 8889999999988765

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=94.26  E-value=0.082  Score=43.46  Aligned_cols=31  Identities=10%  Similarity=0.016  Sum_probs=28.0

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.++|+|++.++.+.++||..+..
T Consensus       196 ~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       196 TVLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             eeeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            4699999999999999999999999987765

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PHA03111 Ser/Thr kinase; Provisional

Probab=94.20  E-value=0.1  Score=43.33  Aligned_cols=53  Identities=17%  Similarity=0.157  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhc--CCCCcccCCCCCCcEEEecCC------------------cEEEeecCcccc
Q psy238           89 LSAWKRWCSQILSALSYLHS--CSPPIIHGNLTCDTIFIQHNG------------------LVKIGCDTYTHT  141 (218)
Q Consensus        89 ~~~~~~~~~qi~~~l~~lH~--~~~~iiH~dlkp~NiLl~~~~------------------~~ki~dfg~~~~  141 (218)
                      ..-++.++.||+.-.-.+..  |....+|-||||+|||+.+..                  .++|.||.+|+.
T Consensus       278 ~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv  350 (444)
T PHA03111        278 VEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDEPISITLKDATYVFNEPIKACLNDFDFSQV  350 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCCcEEEEECCeEEEeccchhhhhcccCHHHH
Confidence            45667788888655434422  125699999999999995432                  345667777765

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=94.09  E-value=0.093  Score=43.70  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=26.1

Q ss_pred             cccCCCCCCcEEEecCCc-EEEeecCcccc
Q psy238          113 IIHGNLTCDTIFIQHNGL-VKIGCDTYTHT  141 (218)
Q Consensus       113 iiH~dlkp~NiLl~~~~~-~ki~dfg~~~~  141 (218)
                      +||+|+.|.|||++.+.. +-++||+.+..
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~  228 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAGY  228 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEcccccc
Confidence            899999999999998874 88999998765

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=94.04  E-value=0.13  Score=41.18  Aligned_cols=63  Identities=11%  Similarity=0.038  Sum_probs=39.3

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEecc-CCCCHHHHH
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYM-SSGSLKQFL   77 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~-~~~sL~~~l   77 (218)
                      +.+|.++++|+........      .-......|...+-.+.|+++..-...      -.|++|.+ ++.+|.++.
T Consensus        23 ~~dG~~avLKl~~p~~~~~------~E~~g~~~L~~w~G~GaVrll~~d~~~------~AlLLErl~~g~~L~~~~   86 (253)
T PF04655_consen   23 RADGTPAVLKLAPPHAEAE------HEARGEAALRWWNGRGAVRLLAADPER------GALLLERLDPGRSLASLP   86 (253)
T ss_pred             cCCCCeEEEEecCCcccch------hhhhHHhHhheeCCCCceeeecccccc------chhhhhhccCCCchhhcc
Confidence            5689999999887321100      011112447777888899998765332      47888988 555676554

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		5e-25
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		3e-09
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-07
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		2e-06
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		3e-06
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		3e-06
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		4e-06
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		5e-06
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		7e-06
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		7e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-05
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-05
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-05
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-05
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-05
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-05
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		2e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		2e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-05
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-05
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-05
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-05
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-05
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-05
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-05
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-05
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-05
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-05
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		3e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		3e-05
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		3e-05
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		3e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		3e-05
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		4e-05
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		5e-05
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		5e-05
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		5e-05
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		6e-05
3ll6_A	337	Crystal Structure Of The Human Cyclin G Associated		6e-05
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		6e-05
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		7e-05
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		7e-05
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		8e-05
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		8e-05
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		8e-05
4fie_A	423	Full-Length Human Pak4 Length = 423		8e-05
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		8e-05
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		8e-05
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		9e-05
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		9e-05
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		9e-05
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		9e-05
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		9e-05
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		9e-05
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		1e-04
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		1e-04
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		1e-04
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		1e-04
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-04
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		1e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		1e-04
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		1e-04
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		1e-04
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		1e-04
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-04
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		1e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		1e-04
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		1e-04
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		1e-04
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		1e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		1e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		1e-04
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		1e-04
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		1e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		1e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		1e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		1e-04
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		1e-04
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		1e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		1e-04
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		1e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		1e-04
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		1e-04
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		1e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		1e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-04
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		1e-04
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		1e-04
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		1e-04
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		2e-04
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		2e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		2e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		2e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-04
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		2e-04
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		2e-04
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-04
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		2e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		2e-04
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		2e-04
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		3e-04
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		3e-04
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		3e-04
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		3e-04
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		3e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		3e-04
2pzi_A	681	Crystal Structure Of Protein Kinase Pkng From Mycob		3e-04
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		3e-04
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		3e-04
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		3e-04
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		3e-04
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		3e-04
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		3e-04
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		3e-04
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-04
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-04
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		3e-04
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		3e-04
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		3e-04
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		3e-04
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		4e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		4e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		4e-04
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		4e-04
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		4e-04
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		5e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		5e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		5e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		5e-04
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		5e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		6e-04
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		6e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		6e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		6e-04
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		6e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-04
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		7e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		8e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		8e-04
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		9e-04
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		9e-04

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           +DTE  VEV W E+Q  +RK  K++ ++ ++  E L  L+HPNIV+F+  W  T   K  
Sbjct: 46  LDTETTVEVAWCELQ--DRKLTKSERQRFKEEAEXLKGLQHPNIVRFYDSWESTVKGKKC 103
Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           ++ +TE  +SG+LK +LKR K  V K+ +   + WC QIL  L +LH+ +PPIIH +L C
Sbjct: 104 IVLVTELXTSGTLKTYLKRFK--VXKIKV--LRSWCRQILKGLQFLHTRTPPIIHRDLKC 159
Query: 121 DTIFIQH-NGLVKIGCDTYTHTIENKKYLSA 150
           D IFI    G VKIG D    T++   +  A
Sbjct: 160 DNIFITGPTGSVKIG-DLGLATLKRASFAKA 189

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 5   EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI 64
           +GV V   +VQ  +  + KA+ + I+++ + L QL HPN++K++  + + +     +  +
Sbjct: 56  DGVPVALKKVQIFDLMDAKARADCIKEI-DLLKQLNHPNVIKYYASFIEDNE----LNIV 110
Query: 65  TEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIF 124
            E   +G L + +K  K+  + +P     ++  Q+ SAL ++HS    ++H ++    +F
Sbjct: 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVF 168
Query: 125 IQHNGLVKIG 134
           I   G+VK+G
Sbjct: 169 ITATGVVKLG 178

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR- 94
           + +L HPNIV F    T      P +  +TEY+S GSL + L ++    +   L   +R 
Sbjct: 88  MKRLRHPNIVLFMGAVTQP----PNLSIVTEYLSRGSLYRLLHKSGAREQ---LDERRRL 140
Query: 95  -WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQ 153
                +   ++YLH+ +PPI+H NL    + +     VK+ CD     ++   +LS ++ 
Sbjct: 141 SMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKV-CDFGLSRLKASTFLS-SKS 198
Query: 154 TYGRP 158
             G P
Sbjct: 199 AAGTP 203

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 29  IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP 88
           +++  E L  L H NIVK+    T+   +   +  I E++ SGSLK++L + K    K+ 
Sbjct: 70  LKKEIEILRNLYHENIVKYKGICTEDGGNG--IKLIMEFLPSGSLKEYLPKNKN---KIN 124
Query: 89  LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYL 148
           L    ++  QI   + YL S     +H +L    + ++    VKIG    T  IE  K  
Sbjct: 125 LKQQLKYAVQICKGMDYLGSRQ--YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEX 182
Query: 149 SATRQTYGRPI 159
              +     P+
Sbjct: 183 XTVKDDRDSPV 193

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 29  IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP 88
           +++  E L  L H NIVK+    T+   +   +  I E++ SGSLK++L + K    K+ 
Sbjct: 58  LKKEIEILRNLYHENIVKYKGICTEDGGNG--IKLIMEFLPSGSLKEYLPKNKN---KIN 112
Query: 89  LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYL 148
           L    ++  QI   + YL S     +H +L    + ++    VKIG    T  IE  K  
Sbjct: 113 LKQQLKYAVQICKGMDYLGSRQ--YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEX 170
Query: 149 SATRQTYGRPI 159
              +     P+
Sbjct: 171 XTVKDDRDSPV 181

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR- 94
           + +L HPNIV F    T      P +  +TEY+S GSL + L ++    +   L   +R 
Sbjct: 88  MKRLRHPNIVLFMGAVTQP----PNLSIVTEYLSRGSLYRLLHKSGAREQ---LDERRRL 140
Query: 95  -WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQ 153
                +   ++YLH+ +PPI+H +L    + +     VK+ CD     ++   +L  ++ 
Sbjct: 141 SMAYDVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKV-CDFGLSRLKASXFLX-SKX 198
Query: 154 TYGRP 158
             G P
Sbjct: 199 AAGTP 203

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 27/139 (19%)
Query: 17  SERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF 76
           SERK F  +          L+++ HPNIVK +    +       V  + EY   GSL   
Sbjct: 44  SERKAFIVE-------LRQLSRVNHPNIVKLYGACLNP------VCLVMEYAEGGSLYNV 90
Query: 77  LKRTKRNVKKLP---LSAWKRWCSQILSALSYLHSCSP-PIIHGNLTCDTIFIQHNGLV- 131
           L       + LP    +    WC Q    ++YLHS  P  +IH +L    + +   G V 
Sbjct: 91  L----HGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVL 146
Query: 132 -----KIGCDTYTHTIENK 145
                   CD  TH   NK
Sbjct: 147 KICDFGTACDIQTHMTNNK 165

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 27/139 (19%)
Query: 17  SERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF 76
           SERK F  +          L+++ HPNIVK +    +       V  + EY   GSL   
Sbjct: 43  SERKAFIVE-------LRQLSRVNHPNIVKLYGACLNP------VCLVMEYAEGGSLYNV 89
Query: 77  LKRTKRNVKKLP---LSAWKRWCSQILSALSYLHSCSP-PIIHGNLTCDTIFIQHNGLV- 131
           L       + LP    +    WC Q    ++YLHS  P  +IH +L    + +   G V 
Sbjct: 90  L----HGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVL 145
Query: 132 -----KIGCDTYTHTIENK 145
                   CD  TH   NK
Sbjct: 146 KICDFGTACDIQTHMTNNK 164

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 24  AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK----- 78
           A  +  Q+  E LT L+H +IVKF+        D   +I + EYM  G L +FL+     
Sbjct: 59  AARKDFQREAELLTNLQHEHIVKFY----GVCGDGDPLIMVFEYMKHGDLNKFLRAHGPD 114
Query: 79  -------RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLV 131
                  + ++   +L LS      SQI S + YL   S   +H +L      +  N LV
Sbjct: 115 AMILVDGQPRQAKGELGLSQMLHIASQIASGMVYL--ASQHFVHRDLATRNCLVGANLLV 172
Query: 132 KIG 134
           KIG
Sbjct: 173 KIG 175

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L+ + HP I+   R W  T  D  ++  I +Y+  G L   L++++R     P    K +
Sbjct: 60  LSIVTHPFII---RMWG-TFQDAQQIFMIMDYIEGGELFSLLRKSQR----FPNPVAKFY 111
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
            +++  AL YLHS    II+ +L  + I +  NG +KI    +   + +  Y       Y
Sbjct: 112 AAEVCLALEYLHSKD--IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXLCGTPDY 169
Query: 156 GRP 158
             P
Sbjct: 170 IAP 172

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 100 MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 154
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 155 --GIASGMKYLSDMG--FVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 210
Query: 156 GRPI 159
             PI
Sbjct: 211 KIPI 214

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 40  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 91
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH NL    I
Sbjct: 92  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRNLATRNI 146
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 147 LVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPI 182

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 39  LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQ 98
           LEHPN++KF       + DK R+ FITEY+  G+L+  +K       + P S    +   
Sbjct: 64  LEHPNVLKF---IGVLYKDK-RLNFITEYIKGGTLRGIIKSMD---SQYPWSQRVSFAKD 116
Query: 99  ILSALSYLHSCSPPIIHGNLTCDTIFIQHN--------GLVKIGCDTYT 139
           I S ++YLHS +  IIH +L      ++ N        GL ++  D  T
Sbjct: 117 IASGMAYLHSMN--IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT 163

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 100 MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 154
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 155 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 210
Query: 156 GRPI 159
             PI
Sbjct: 211 KIPI 214

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 98  MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 152
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 153 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 208
Query: 156 GRPI 159
             PI
Sbjct: 209 KIPI 212

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 71  MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 125
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 126 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 181
Query: 156 GRPI 159
             PI
Sbjct: 182 KIPI 185

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 88  MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 142
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 143 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 198
Query: 156 GRPI 159
             PI
Sbjct: 199 KIPI 202

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 100 MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 154
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 155 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 210
Query: 156 GRPI 159
             PI
Sbjct: 211 KIPI 214

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 100 MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 154
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 155 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 210
Query: 156 GRPI 159
             PI
Sbjct: 211 KIPI 214

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 100 MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 154
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 155 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 210
Query: 156 GRPI 159
             PI
Sbjct: 211 KIPI 214

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI+      T     KP V+ ITEYM +GSL  FL++       + L    R 
Sbjct: 84  MGQFDHPNIIHLEGVVTKC---KP-VMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR- 138
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL   S   +H +L    I +  N + K+     +  +E+    + T +  
Sbjct: 139 --GIGSGMKYLSDMSA--VHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGG 194
Query: 156 GRPI 159
             PI
Sbjct: 195 KIPI 198

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 100 MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 154
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+        +E+    + T +  
Sbjct: 155 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGG 210
Query: 156 GRPI 159
             PI
Sbjct: 211 KIPI 214

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 43  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 94
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 95  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 149
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 150 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 185

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 90
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 91  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 145
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 146 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 181

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 93
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 94  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 148
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 149 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 184

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 37  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 88
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 89  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 143
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 144 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 179

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 108
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 109 IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 163
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 164 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 199

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 38  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 89
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 90  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 144
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 145 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 180

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 20  KNFKAQEEKIQQVFEN---LTQLEHPNIVKFHRYWTDTHN--------DKPRVIFI-TEY 67
           K  +  EEK+  +      L  L H  +V+++  W +  N         K   +FI  EY
Sbjct: 37  KKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEY 96
Query: 68  MSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH 127
             +G+L   +     N ++     + R   QIL ALSY+HS    IIH +L    IFI  
Sbjct: 97  CENGTLYDLIHSENLNQQR---DEYWRLFRQILEALSYIHSQG--IIHRDLKPMNIFIDE 151
Query: 128 NGLVKIG 134
           +  VKIG
Sbjct: 152 SRNVKIG 158

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 90
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 91  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 145
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 146 LVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPI 181

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 45  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 96
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 97  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 151
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 152 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 187

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 108
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 109 IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 163
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 164 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 199

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 90
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 91  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 145
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 146 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 181

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 70  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 121
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 122 IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 176
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 177 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 212

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 44  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 95
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 96  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 150
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 151 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 186

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 46  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 97
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 98  IMEYLPYGSLRDYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 152
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 153 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 188

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI+      T     KP V+ ITEYM +GSL  FL++       + L    R 
Sbjct: 69  MGQFDHPNIIHLEGVVTKC---KP-VMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR- 123
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL   S   +H +L    I +  N + K+     +  +E+    + T +  
Sbjct: 124 --GIGSGMKYLSDMS--YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGG 179
Query: 156 GRPI 159
             PI
Sbjct: 180 KIPI 183

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TEYM +GSL  FL++       + L    R 
Sbjct: 100 MGQFDHPNIIRLEGVVTKS---KP-VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR- 154
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+        +E+    + T +  
Sbjct: 155 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGG 210
Query: 156 GRPI 159
             PI
Sbjct: 211 KIPI 214

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI+      T +   KP V+ +TEYM +GSL  FLK+       + L    R 
Sbjct: 77  MGQFDHPNIIHLEGVVTKS---KP-VMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRG 132
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
            S   + + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 133 IS---AGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 187
Query: 156 GRPI 159
             PI
Sbjct: 188 KIPI 191

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI+      T     KP V+ ITEYM +GSL  FL++       + L    R 
Sbjct: 63  MGQFDHPNIIHLEGVVTKC---KP-VMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR- 117
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL   S   +H +L    I +  N + K+     +  +E+    + T +  
Sbjct: 118 --GIGSGMKYLSDMS--YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGG 173
Query: 156 GRPI 159
             PI
Sbjct: 174 KIPI 177

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 93
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I E++  GSL+++L++ K  +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 94  IMEFLPYGSLREYLQKHKERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 148
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 149 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 184

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E+I+   E L  L+HPNI+K    + D HN    +  + E    G L + +   +   K 
Sbjct: 65  EQIEAEIEVLKSLDHPNIIKIFEVFEDYHN----MYIVMETCEGGELLERIVSAQARGKA 120
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ 126
           L          Q+++AL+Y HS    ++H +L  + I  Q
Sbjct: 121 LSEGYVAELMKQMMNALAYFHSQH--VVHKDLKPENILFQ 158

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FK Q EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 46  FKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 101
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++  R  ++   +    + +++ +ALSY HS    +IH ++  + + +  NG +KI 
Sbjct: 102 ELQKLSRFDEQRTAT----YITELANALSYCHSKR--VIHRDIKPENLLLGSNGELKIA 154

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FK Q EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 46  FKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 101
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++  R  ++   +    + +++ +ALSY HS    +IH ++  + + +  NG +KI 
Sbjct: 102 ELQKLSRFDEQRTAT----YITELANALSYCHSKR--VIHRDIKPENLLLGSNGELKIA 154

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 6   GVEVVWNEVQFSERKNFKA-QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI 64
           G+EV    +   ++  +KA   +++Q   +   QL+HP+I++ + Y+ D++     V  +
Sbjct: 36  GLEVAIKMID--KKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSN----YVYLV 89
Query: 65  TEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIF 124
            E   +G + ++L   K  VK    +  + +  QI++ + YLHS    I+H +LT   + 
Sbjct: 90  LEMCHNGEMNRYL---KNRVKPFSENEARHFMHQIITGMLYLHSHG--ILHRDLTLSNLL 144
Query: 125 IQHNGLVKIG 134
           +  N  +KI 
Sbjct: 145 LTRNMNIKIA 154

>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase (gak) Length = 337

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 25/147 (17%)
Query: 10  VWNEVQFSERKNFKAQEEKIQQVFENLTQLE----HPNIVKFHRYWT----DTHNDKPRV 61
           V +  +++ ++    +EEK + + + +  ++    HPNIV+F    +    ++   +   
Sbjct: 50  VGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEF 109
Query: 62  IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILS-------ALSYLHSCSPPII 114
           + +TE +  G L +FLK+ +    + PLS     C  +L        A+ ++H   PPII
Sbjct: 110 LLLTE-LCKGQLVEFLKKME---SRGPLS-----CDTVLKIFYQTCRAVQHMHRQKPPII 160
Query: 115 HGNLTCDTIFIQHNGLVKIGCDTYTHT 141
           H +L  + + + + G +K+ CD  + T
Sbjct: 161 HRDLKVENLLLSNQGTIKL-CDFGSAT 186

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 436 EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKFS--- 487
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +  N  VK+G    +  +E+  
Sbjct: 488 LDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 545
Query: 147 YLSATR 152
           Y  A++
Sbjct: 546 YYKASK 551

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 20  KNFKAQEEKIQQVFEN---LTQLEHPNIVKFHRYWTDTHN--------DKPRVIFI-TEY 67
           K  +  EEK+  +      L  L H  +V+++  W +  N         K   +FI  EY
Sbjct: 37  KKIRHTEEKLSTILSEVXLLASLNHQYVVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEY 96
Query: 68  MSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH 127
             + +L   +     N ++     + R   QIL ALSY+HS    IIH NL    IFI  
Sbjct: 97  CENRTLYDLIHSENLNQQR---DEYWRLFRQILEALSYIHSQG--IIHRNLKPXNIFIDE 151
Query: 128 NGLVKIG 134
           +  VKIG
Sbjct: 152 SRNVKIG 158

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E+I++    L Q+ HPNI+  H    D + ++  V+ I E +S G L  FL +     + 
Sbjct: 60  EEIEREVSILRQVLHPNIITLH----DVYENRTDVVLILELVSGGELFDFLAQK----ES 111
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIF-------IQHNGLVKIGCDTYT 139
           L       +  QIL  ++YLH  +  I H +L  + I        I H  L+  G     
Sbjct: 112 LSEEEATSFIKQILDGVNYLH--TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGL---A 166
Query: 140 HTIEN 144
           H IE+
Sbjct: 167 HEIED 171

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 53  EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKYS--- 104
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +  N  VK+G    +  +E+  
Sbjct: 105 LDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 162
Query: 147 YLSATR 152
           Y  A++
Sbjct: 163 YYKASK 168

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 59  EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKYS--- 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +  N  VK+G    +  +E+  
Sbjct: 111 LDLASLILYAYQLSTALAYLES--KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 168
Query: 147 YLSATR 152
           Y  A++
Sbjct: 169 YYKASK 174

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 58  EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKYS--- 109
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +  N  VK+G    +  +E+  
Sbjct: 110 LDLASLILYAYQLSTALAYLES--KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 167
Query: 147 YLSATR 152
           Y  A++
Sbjct: 168 YYKASK 173

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   +  T+ N +++        C  +L ALS LH+    +IH ++  D+I
Sbjct: 226 VMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQG--VIHRDIKSDSI 278
Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
            + H+G VK+     C   +  +  +K L  T
Sbjct: 279 LLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 310

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 61  EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKYS--- 112
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +  N  VK+G    +  +E+  
Sbjct: 113 LDLASLILYAYQLSTALAYLES--KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 170
Query: 147 YLSATR 152
           Y  A++
Sbjct: 171 YYKASK 176

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKYS--- 107
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +  N  VK+G    +  +E+  
Sbjct: 108 LDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 165
Query: 147 YLSATR 152
           Y  A++
Sbjct: 166 YYKASK 171

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 59  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 114
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 115 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 167

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKYS--- 107
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +  N  VK+G    +  +E+  
Sbjct: 108 LDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 165
Query: 147 YLSATR 152
           Y  A++
Sbjct: 166 YYKASK 171

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 84  EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKYS--- 135
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +  N  VK+G    +  +E+  
Sbjct: 136 LDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 193
Query: 147 YLSATR 152
           Y  A++
Sbjct: 194 YYKASK 199

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   +  T+ N +++        C  +L ALS LH+    +IH ++  D+I
Sbjct: 149 VMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQG--VIHRDIKSDSI 201
Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
            + H+G VK+     C   +  +  +K L  T
Sbjct: 202 LLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 233

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 26  EEKIQQVFENLTQ-------LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
           +E I Q  EN+ Q       L+HPNI+            +P +  + E+   G L + L 
Sbjct: 43  DEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLK----EPNLCLVMEFARGGPLNRVLS 98
Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFI 125
                 K++P      W  QI   ++YLH     PIIH +L    I I
Sbjct: 99  G-----KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILI 141

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 68  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 123
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 124 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 176

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 68  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 123
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 124 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 176

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   +  T+ N +++        C  +L ALS LH+    +IH ++  D+I
Sbjct: 106 VMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQG--VIHRDIKSDSI 158
Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
            + H+G VK+     C   +  +  +K L  T
Sbjct: 159 LLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 190

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   +  T+ N +++        C  +L ALS LH+    +IH ++  D+I
Sbjct: 104 VMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQG--VIHRDIKSDSI 156
Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
            + H+G VK+     C   +  +  +K L  T
Sbjct: 157 LLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 188

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 43  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 98
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 99  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 151

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TE M +GSL  FL++       + L    R 
Sbjct: 100 MGQFDHPNIIRLEGVVTKS---KP-VMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLR- 154
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 155 --GIASGMKYLSDMGA--VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 210
Query: 156 GRPI 159
             PI
Sbjct: 211 KIPI 214

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 45  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 100
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 101 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 153

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G + +
Sbjct: 47  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPRGEVYK 102
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 103 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 155

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G + +
Sbjct: 47  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPRGEVYK 102
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 103 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 155

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 44  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 99
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 100 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 152

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 47  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 102
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 103 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 155

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 30  QQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPL 89
           +Q  + L  L H +I+K+     D    +  +  + EY+  GSL+ +L R    + +L L
Sbjct: 64  KQEIDILRTLYHEHIIKYKGCCED--QGEKSLQLVMEYVPLGSLRDYLPRHSIGLAQLLL 121
Query: 90  SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            A      QI   ++YLHS     IH NL    + + ++ LVKIG
Sbjct: 122 FA-----QQICEGMAYLHSQH--YIHRNLAARNVLLDNDRLVKIG 159

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 42  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 97
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 98  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 150

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 45  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 100
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 101 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 153

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 47  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 102
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 103 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 155

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 45  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 100
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 101 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 153

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 47  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 102
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 103 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 155

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 43  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 98
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 99  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 151

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 43  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 98
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 99  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 151

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 30  QQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPL 89
           + VFE  +   HP +V  H  +      + R+ F+ EY++ G L   ++R +    KLP 
Sbjct: 103 KHVFEQASN--HPFLVGLHSCF----QTESRLFFVIEYVNGGDLMFHMQRQR----KLPE 152
Query: 90  SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
              + + ++I  AL+YLH     II+ +L  D + +   G +K+
Sbjct: 153 EHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKL 194

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 42  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 97
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 98  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 150

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 42  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 97
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 98  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 150

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 46  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 101
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 102 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 154

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 44  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 99
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 100 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 152

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 42  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 97
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 98  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 150

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   +  T+ N +++        C  +L ALS LH+    +IH ++  D+I
Sbjct: 95  VMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQG--VIHRDIKSDSI 147
Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
            + H+G VK+     C   +  +  +K L  T
Sbjct: 148 LLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 179

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 41  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 96
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 97  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 149

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q EHPNI++     T   N  P V+ +TE+M +G+L  FL+        + L    R 
Sbjct: 69  MGQFEHPNIIRLEGVVT---NSMP-VMILTEFMENGALDSFLRLNDGQFTVIQLVGMLR- 123
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL   S   +H +L    I +  N + K+     +  +E     +++  TY
Sbjct: 124 --GIASGMRYLAEMS--YVHRDLAARNILVNSNLVCKVSDFGLSRFLEE----NSSDPTY 175
Query: 156 GRPISGQYEI 165
              + G+  I
Sbjct: 176 TSSLGGKIPI 185

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 45  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 100
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 101 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 153

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 39  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 94
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 95  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 147

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 45  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 100
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 101 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 153

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 42  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 97
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 98  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 150

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 30  QQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPL 89
           + VFE  +   HP +V  H  +      + R+ F+ EY++ G L   ++R +    KLP 
Sbjct: 71  KHVFEQASN--HPFLVGLHSCF----QTESRLFFVIEYVNGGDLMFHMQRQR----KLPE 120
Query: 90  SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
              + + ++I  AL+YLH     II+ +L  D + +   G +K+
Sbjct: 121 EHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKL 162

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   +  T+ N +++        C  +L ALS LH+    +IH ++  D+I
Sbjct: 99  VMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQG--VIHRDIKSDSI 151
Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
            + H+G VK+     C   +  +  +K L  T
Sbjct: 152 LLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 183

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 42  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 97
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 98  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 150

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 42  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 97
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 98  ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 150

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q EHPNI++     T   N  P V+ +TE+M +G+L  FL+        + L    R 
Sbjct: 71  MGQFEHPNIIRLEGVVT---NSMP-VMILTEFMENGALDSFLRLNDGQFTVIQLVGMLR- 125
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
              I S + YL   S   +H +L    I +  N + K+
Sbjct: 126 --GIASGMRYLAEMS--YVHRDLAARNILVNSNLVCKV 159

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 45  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDATRVYLILEYAPLGTVYR 100
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 101 ELQK----LSKFDEQRTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIA 153

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 22  FKAQEEK------IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           FKAQ EK      +++  E  + L HPNI++ + Y+    +D  RV  I EY   G++ +
Sbjct: 42  FKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYF----HDSTRVYLILEYAPLGTVYR 97
Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            L++    + K        + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 98  ELQK----LSKFDEQRTATYITELANALSYCHSKK--VIHRDIKPENLLLGSAGELKIA 150

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E+I++    L ++ HPNI+  H    D   +K  V+ I E +S G L  FL       + 
Sbjct: 53  EEIEREVNILREIRHPNIITLH----DIFENKTDVVLILELVSGGELFDFLAEK----ES 104
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L      ++  QIL  + YLHS    I H +L  + I +
Sbjct: 105 LTEDEATQFLKQILDGVHYLHSKR--IAHFDLKPENIML 141

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           +  L+H  +VK H   T     K  +  ITE+M+ GSL  FLK  + +  K PL     +
Sbjct: 64  MKTLQHDKLVKLHAVVT-----KEPIYIITEFMAKGSLLDFLKSDEGS--KQPLPKLIDF 116
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKY 147
            +QI   ++++   +   IH +L    I +  + + KI        IE+ +Y
Sbjct: 117 SAQIAEGMAFIEQRN--YIHRDLRAANILVSASLVCKIADFGLARVIEDNEY 166

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 30  QQVFENLTQLEHPNIVKFHR-YWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP 88
           + VFE  +   HP +V  H  + T++     R+ F+ EY++ G L   ++R +    KLP
Sbjct: 56  KHVFEQASN--HPFLVGLHSCFQTES-----RLFFVIEYVNGGDLMFHMQRQR----KLP 104
Query: 89  LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
               + + ++I  AL+YLH     II+ +L  D + +   G +K+
Sbjct: 105 EEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKL 147

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 30  QQVFENLTQLEHPNIVKFHR-YWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP 88
           + VFE  +   HP +V  H  + T++     R+ F+ EY++ G L   ++R +    KLP
Sbjct: 60  KHVFEQASN--HPFLVGLHSCFQTES-----RLFFVIEYVNGGDLMFHMQRQR----KLP 108
Query: 89  LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
               + + ++I  AL+YLH     II+ +L  D + +   G +K+
Sbjct: 109 EEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKL 151

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E+I++    L ++ HPNI+  H    D   +K  V+ I E +S G L  FL       + 
Sbjct: 74  EEIEREVNILREIRHPNIITLH----DIFENKTDVVLILELVSGGELFDFLAEK----ES 125
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L      ++  QIL  + YLHS    I H +L  + I +
Sbjct: 126 LTEDEATQFLKQILDGVHYLHSKR--IAHFDLKPENIML 162

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           +  L+H  +VK H   T     K  +  ITE+M+ GSL  FLK  + +  K PL     +
Sbjct: 237 MKTLQHDKLVKLHAVVT-----KEPIYIITEFMAKGSLLDFLKSDEGS--KQPLPKLIDF 289
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKY 147
            +QI   ++++   +   IH +L    I +  + + KI        IE+ +Y
Sbjct: 290 SAQIAEGMAFIEQRN--YIHRDLRAANILVSASLVCKIADFGLARVIEDNEY 339

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TE M +GSL  FL++       + L    R 
Sbjct: 71  MGQFDHPNIIRLEGVVTKS---KP-VMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLR- 125
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 126 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 181
Query: 156 GRPI 159
             PI
Sbjct: 182 KIPI 185

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + Q +HPNI++     T +   KP V+ +TE M +GSL  FL++       + L    R 
Sbjct: 100 MGQFDHPNIIRLEGVVTKS---KP-VMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLR- 154
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY 155
              I S + YL       +H +L    I I  N + K+     +  +E+    + T +  
Sbjct: 155 --GIASGMKYLSDMG--YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGG 210
Query: 156 GRPI 159
             PI
Sbjct: 211 KIPI 214

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E+I++    L ++ HPNI+  H    D   +K  V+ I E +S G L  FL       + 
Sbjct: 60  EEIEREVNILREIRHPNIITLH----DIFENKTDVVLILELVSGGELFDFLAEK----ES 111
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L      ++  QIL  + YLHS    I H +L  + I +
Sbjct: 112 LTEDEATQFLKQILDGVHYLHSKR--IAHFDLKPENIML 148

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 28  KIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL 87
           KI++  +NL    HP+I+K ++  + T +D   +  + EY+S G L  ++ +  R  +K 
Sbjct: 62  KIRREIQNLKLFRHPHIIKLYQVIS-TPSD---IFMVMEYVSGGELFDYICKNGRLDEK- 116
Query: 88  PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKY 147
                +R   QILS + Y H     ++H +L  + + +  +   KI     ++ + + ++
Sbjct: 117 ---ESRRLFQQILSGVDYCHRHM--VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF 171
Query: 148 LSATRQTYGRPISGQYEIVT 167
           L   R + G P     E+++
Sbjct: 172 L---RXSCGSPNYAAPEVIS 188

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + +L H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 58  EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLR 112
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 113 LPQLV--DMAAQIASGMAYVERMN--YVHRDLAAANILVGENLVCKVADFGLARLIEDNE 168
Query: 147 YLSATRQTYGRPI 159
           Y +  RQ    PI
Sbjct: 169 YTA--RQGAKFPI 179

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 30  QQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPL 89
           +Q  + L  L H +I+K+     D    +  +  + EY+  GSL+ +L R    + +L L
Sbjct: 64  KQEIDILRTLYHEHIIKYKGCCED--QGEKSLQLVMEYVPLGSLRDYLPRHSIGLAQLLL 121
Query: 90  SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            A      QI   ++YLH+     IH NL    + + ++ LVKIG
Sbjct: 122 FA-----QQICEGMAYLHAQH--YIHRNLAARNVLLDNDRLVKIG 159

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 15/156 (9%)
Query: 6   GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHR--YWTDTHNDKPRVIF 63
           G  V   ++Q S  ++ +  E +I    E L  L+H NIVK+    Y     N K     
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREI----EILKSLQHDNIVKYKGVCYSAGRRNLK----L 93
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           I EY+  GSL+ +L+     +  + L    ++ SQI   + YL +     IH +L    I
Sbjct: 94  IMEYLPYGSLRDYLQAHAERIDHIKLL---QYTSQICKGMEYLGTKR--YIHRDLATRNI 148
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
            +++   VKIG    T  +   K     ++    PI
Sbjct: 149 LVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 184

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
           R+   ++E+ I++  E + +L HP +V+ +        ++  +  +TE+M  G L  +L 
Sbjct: 41  REGAMSEEDFIEEA-EVMMKLSHPKLVQLY----GVCLEQAPICLVTEFMEHGCLSDYL- 94
Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTY 138
           RT+R +           C  +   ++YL      +IH +L      +  N ++K+     
Sbjct: 95  RTQRGL--FAAETLLGMCLDVCEGMAYLEEAC--VIHRDLAARNCLVGENQVIKVSDFGM 150
Query: 139 THTIENKKYLSAT 151
           T  + + +Y S+T
Sbjct: 151 TRFVLDDQYTSST 163

>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From Mycobacterium Tuberculosis In Complex With Tetrahydrobenzothiophene Ax20017 Length = 681

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 36  LTQLEHPNIVKFHRY--WTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWK 93
           L ++ HP+IV+   +   TD H D P    + EY+      Q LKR+K   +KLP++   
Sbjct: 133 LAEVVHPSIVQIFNFVEHTDRHGD-PVGYIVMEYVGG----QSLKRSKG--QKLPVAEAI 185
Query: 94  RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL 130
            +  +IL ALSYLHS    +++ +L  + I +    L
Sbjct: 186 AYLLEILPALSYLHSIG--LVYNDLKPENIMLTEEQL 220

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + +L H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 58  EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLR 112
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 113 LPQLV--DMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168
Query: 147 YLSATRQTYGRPI 159
           Y +  RQ    PI
Sbjct: 169 YTA--RQGAKFPI 179

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 58  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 109
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 110 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 146

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILIGELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + +L H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 49  EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLR 103
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 104 LPQLV--DMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE 159
Query: 147 YLSATRQTYGRPI 159
           Y +  RQ    PI
Sbjct: 160 YTA--RQGAKFPI 170

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + +L H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 51  EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLR 105
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 106 LPQLV--DMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE 161
Query: 147 YLSATRQTYGRPI 159
           Y +  RQ    PI
Sbjct: 162 YTA--RQGAKFPI 172

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 20  KNFKAQEEKIQQVFEN---LTQLEHPNIVKFHRYWTDTHN--------DKPRVIFI-TEY 67
           K  +  EEK+  +      L  L H  +V+++  W +  N         K   +FI  EY
Sbjct: 37  KKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEY 96
Query: 68  MSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH 127
             + +L   +     N ++     + R   QIL ALSY+HS    IIH +L    IFI  
Sbjct: 97  CENRTLYDLIHSENLNQQR---DEYWRLFRQILEALSYIHSQG--IIHRDLKPMNIFIDE 151
Query: 128 NGLVKIG 134
           +  VKIG
Sbjct: 152 SRNVKIG 158

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + +L H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 47  EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLR 101
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 102 LPQLV--DMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE 157
Query: 147 YLSATRQTYGRPI 159
           Y    RQ    PI
Sbjct: 158 Y--TARQGAKFPI 168

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 58  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 109
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 110 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 146

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 436 EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKFS--- 487
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +     VK+G    +  +E+  
Sbjct: 488 LDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSATDCVKLGDFGLSRYMEDST 545
Query: 147 YLSATR 152
           Y  A++
Sbjct: 546 YYKASK 551

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           MD   G EV   ++   ++   +    +I  + EN    ++PNIV +     D++     
Sbjct: 41  MDVATGQEVAIRQMNLQQQPKKELIINEILVMREN----KNPNIVNY----LDSYLVGDE 92
Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           +  + EY++ GSL   +  T  +  ++        C + L AL +LHS    +IH N+  
Sbjct: 93  LWVVMEYLAGGSLTDVVTETCMDEGQI-----AAVCRECLQALEFLHSNQ--VIHRNIKS 145
Query: 121 DTIFIQHNGLVKI 133
           D I +  +G VK+
Sbjct: 146 DNILLGMDGSVKL 158

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + +L H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 224 EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLR 278
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 279 LPQLV--DMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334
Query: 147 YLSATRQTYGRPI 159
           Y +  RQ    PI
Sbjct: 335 YTA--RQGAKFPI 345

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + +L H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 224 EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLR 278
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 279 LPQLV--DMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334
Query: 147 YLSATRQTYGRPI 159
           Y +  RQ    PI
Sbjct: 335 YTA--RQGAKFPI 345

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E I++    L +++HPN++  H    + + +K  VI I E ++ G L  FL       + 
Sbjct: 59  EDIEREVSILKEIQHPNVITLH----EVYENKTDVILILELVAGGELFDFLAEK----ES 110
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
           L       +  QIL+ + YLHS    I H +L  + I +
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L +L HPNIVK      D  + + ++  + E++S   LK+F+  +   +  +PL   K +
Sbjct: 57  LKELNHPNIVKL----LDVIHTENKLYLVFEFLSM-DLKKFMDASA--LTGIPLPLIKSY 109
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             Q+L  L++ HS    ++H +L  + + I   G +K+ 
Sbjct: 110 LFQLLQGLAFCHSHR--VLHRDLKPENLLINTEGAIKLA 146

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           L +L HPNIVK      D  + + ++  + E++S   LK+F+  +   +  +PL   K +
Sbjct: 59  LKELNHPNIVKL----LDVIHTENKLYLVFEFLSM-DLKKFMDASA--LTGIPLPLIKSY 111
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             Q+L  L++ HS    ++H +L  + + I   G +K+ 
Sbjct: 112 LFQLLQGLAFCHSHR--VLHRDLKPENLLINTEGAIKLA 148

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
           R+   ++E+ I++  E + +L HP +V+ +        ++  +  + E+M  G L  +L 
Sbjct: 40  REGAMSEEDFIEEA-EVMMKLSHPKLVQLY----GVCLEQAPICLVFEFMEHGCLSDYL- 93
Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTY 138
           RT+R +           C  +   ++YL   S  +IH +L      +  N ++K+     
Sbjct: 94  RTQRGL--FAAETLLGMCLDVCEGMAYLEEAS--VIHRDLAARNCLVGENQVIKVSDFGM 149
Query: 139 THTIENKKYLSAT 151
           T  + + +Y S+T
Sbjct: 150 TRFVLDDQYTSST 162

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 30  QQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPL 89
           +Q  + L  L H +I+K+     D       +  + EY+  GSL+ +L R    + +L L
Sbjct: 81  KQEIDILRTLYHEHIIKYKGCCEDA--GAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLL 138
Query: 90  SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            A      QI   ++YLH+     IH +L    + + ++ LVKIG
Sbjct: 139 FA-----QQICEGMAYLHAQH--YIHRDLAARNVLLDNDRLVKIG 176

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + +L H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 307 EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLR 361
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 362 LP--QLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE 417
Query: 147 YLSATRQTYGRPI 159
           Y +  RQ    PI
Sbjct: 418 YTA--RQGAKFPI 428

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKFS--- 107
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL   S   +H ++    + +     VK+G    +  +E+  
Sbjct: 108 LDLASLILYAYQLSTALAYLE--SKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDST 165
Query: 147 YLSATR 152
           Y  A++
Sbjct: 166 YYKASK 171

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 21  NFKAQEEKIQQVFEN----LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF 76
           N  A   +  Q F+N    L +  H NI+ F  Y T     KP++  +T++    SL   
Sbjct: 55  NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-----KPQLAIVTQWCEGSSLYHH 109
Query: 77  L--KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
           L    TK  +KKL   A      Q    + YLH+ S  IIH +L  + IF+  +  VKIG
Sbjct: 110 LHASETKFEMKKLIDIA-----RQTARGMDYLHAKS--IIHRDLKSNNIFLHEDNTVKIG 162

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 3   TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVI 62
           TE+G + V  E+  S R + K +EE  ++V   L  ++HPNIV++   + +  +    + 
Sbjct: 46  TEDGRQYVIKEINIS-RMSSKEREESRREV-AVLANMKHPNIVQYRESFEENGS----LY 99
Query: 63  FITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR---WCSQILSALSYLHSCSPPIIHGNLT 119
            + +Y   G L    KR   N +K  L    +   W  QI  AL ++H     I+H ++ 
Sbjct: 100 IVMDYCEGGDL---FKRI--NAQKGVLFQEDQILDWFVQICLALKHVHDRK--ILHRDIK 152
Query: 120 CDTIFIQHNGLVKIG 134
              IF+  +G V++G
Sbjct: 153 SQNIFLTKDGTVQLG 167

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + +L H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 225 EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLR 279
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 280 LPQLV--DMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLGRLIEDNE 335
Query: 147 YLSATRQTYGRPI 159
           Y +  RQ    PI
Sbjct: 336 YTA--RQGAKFPI 346

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 21  NFKAQEEKIQQVFEN----LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF 76
           N  A   +  Q F+N    L +  H NI+ F  Y T     KP++  +T++    SL   
Sbjct: 43  NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-----KPQLAIVTQWCEGSSLYHH 97
Query: 77  L--KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
           L    TK  +KKL   A      Q    + YLH+ S  IIH +L  + IF+  +  VKIG
Sbjct: 98  LHASETKFEMKKLIDIA-----RQTARGMDYLHAKS--IIHRDLKSNNIFLHEDNTVKIG 150

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           E   Q  + + ++ H  +V+ +       +++P +  +TEYMS GSL  FLK       +
Sbjct: 58  EAFLQEAQVMKKIRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLR 112
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           LP        +QI S ++Y+   +   +H +L    I +  N + K+        IE+ +
Sbjct: 113 LPQLV--DMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168
Query: 147 YLSATRQTYGRPI 159
           Y +  RQ    PI
Sbjct: 169 YTA--RQGAKFPI 179

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           + +++HPN+V+     T     +P    ITE+M+ G+L  +L+   R  +++        
Sbjct: 270 MKEIKHPNLVQLLGVCTR----EPPFYIITEFMTYGNLLDYLRECNR--QEVSAVVLLYM 323
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG---------CDTYT 139
            +QI SA+ YL   +   IH NL      +  N LVK+           DTYT
Sbjct: 324 ATQISSAMEYLEKKN--FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYT 374

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 27  EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
           EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ FL+  K +   
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSFLQVRKFS--- 107
Query: 87  LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
           L L++   +  Q+ +AL+YL S     +H ++    + +  N  VK+G    +  +E+  
Sbjct: 108 LDLASLILYAYQLSTALAYLESKR--FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 165
Query: 147 YLSATR 152
              A++
Sbjct: 166 XXKASK 171

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 29/166 (17%)
Query: 20  KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND-----------KPRVIFI-TEY 67
           K  K   EK ++  + L +L+H NIV ++  W     D           K + +FI  E+
Sbjct: 42  KRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEF 101
Query: 68  MSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH 127
              G+L+Q+++  KR  +KL          QI   + Y+H  S  +I+ +L    IF+  
Sbjct: 102 CDKGTLEQWIE--KRRGEKLDKVLALELFEQITKGVDYIH--SKKLINRDLKPSNIFLVD 157
Query: 128 NGLVKIGCDTYTHTIENK----------KYLSA---TRQTYGRPIS 160
              VKIG      +++N           +Y+S    + Q YG+ + 
Sbjct: 158 TKQVKIGDFGLVTSLKNDGKRXRSKGTLRYMSPEQISSQDYGKEVD 203

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 64  ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
           + E++  G+L   +  T+ N +++        C  +L ALSYLH+    +IH ++  D+I
Sbjct: 120 VMEFLEGGALTDIVTHTRMNEEQI-----ATVCLSVLRALSYLHNQG--VIHRDIKSDSI 172
Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
            +  +G +K+     C   +  +  +K L  T
Sbjct: 173 LLTSDGRIKLSDFGFCAQVSKEVPKRKXLVGT 204

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           ++ L HPNIVK +      HN  PR++   E++  G L   L      +K    S   R 
Sbjct: 77  MSNLNHPNIVKLYGL---MHN-PPRMVM--EFVPCGDLYHRLLDKAHPIK---WSVKLRL 127
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQ 126
              I   + Y+ + +PPI+H +L    IF+Q
Sbjct: 128 MLDIALGIEYMQNQNPPIVHRDLRSPNIFLQ 158

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 36  LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
           ++ L HPNIVK +      HN  PR++   E++  G L   L      +K    S   R 
Sbjct: 77  MSNLNHPNIVKLYGL---MHN-PPRMVM--EFVPCGDLYHRLLDKAHPIK---WSVKLRL 127
Query: 96  CSQILSALSYLHSCSPPIIHGNLTCDTIFIQ 126
              I   + Y+ + +PPI+H +L    IF+Q
Sbjct: 128 MLDIALGIEYMQNQNPPIVHRDLRSPNIFLQ 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.98
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.98
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.97
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.97
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.97
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.97
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.97
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.97
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.97
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.97
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.97
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.97
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.97
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.97
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.97
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.97
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.97
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.97
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.97
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.97
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.97
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.97
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.97
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.97
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.97
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.97
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.97
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.97
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.97
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.97
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.97
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.97
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.97
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.97
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.97
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.97
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.97
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.97
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.97
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.97
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.97
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.97
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.97
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.97
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.97
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.97
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.97
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.97
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.97
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.97
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.97
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.96
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.96
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.96
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.96
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.96
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.96
3niz_A	311	Rhodanese family protein; structural genomics, str	99.96
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.96
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.96
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.96
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.96
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.96
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.96
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.96
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.96
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.96
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.96
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.96
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.96
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.96
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.96
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.96
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.96
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.96
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.96
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.96
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.96
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.96
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.96
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.96
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.96
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.96
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.96
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.96
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.96
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.96
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.96
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.96
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.96
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.96
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.96
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.96
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.96
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.96
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.96
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.96
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.96
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.96
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.96
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.96
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.96
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.96
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.96
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.96
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.96
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.96
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.96
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.96
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.96
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.96
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.96
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.96
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.96
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.96
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.96
3bhy_A	283	Death-associated protein kinase 3; death associate	99.96
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.96
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.96
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.96
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.96
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.96
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.96
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.96
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.96
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.96
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.96
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.96
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.96
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.96
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.96
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.96
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.96
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.96
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.96
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.96
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.96
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.96
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.96
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.96
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.96
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.96
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.96
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.96
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.96
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.96
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.96
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.96
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.96
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.96
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.96
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.96
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.96
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.96
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.96
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.96
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.96
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.96
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.96
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.96
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.96
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.96
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.96
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.96
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.95
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.95
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.95
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.95
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.95
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.95
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.95
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.95
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.95
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.95
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.95
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.95
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.95
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.95
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.95
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.95
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.95
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.95
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.95
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.95
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.95
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.95
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.95
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.95
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.95
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.95
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.95
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.95
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.95
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.95
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.95
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.95
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.95
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.95
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.95
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.95
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.95
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.95
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.95
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.95
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.95
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.94
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.94
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.94
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.94
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.94
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.94
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.94
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.94
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.94
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.94
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.93
3uqc_A	286	Probable conserved transmembrane protein; structur	99.93
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.93
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.91
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.88
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.83
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.73
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.54
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.25
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.11
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.98
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.78
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.71
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.59
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.58
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.17
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.05
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.78
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.71
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.44
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.43
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.32
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.22
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.08
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.75
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.08
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	95.01
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	94.78
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	94.57
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	94.54
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	94.17
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	93.64
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	93.2
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	92.8
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	92.26
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.4
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	88.03
3mes_A	424	Choline kinase; malaria, structural genomics, stru	86.5

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=2.2e-40  Score=267.96  Aligned_cols=168  Identities=35%  Similarity=0.542  Sum_probs=143.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++...  .......+.+.+|+.+|+.++|||||+++++|.+...+...+|||||||+||+|.+++....
T Consensus        47 ~~~~~~~vAiK~i~~~--~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~~  124 (290)
T 3fpq_A           47 DTETTVEVAWCELQDR--KLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK  124 (290)
T ss_dssp             ETTTCCEEEEEEEEGG--GSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHHS
T ss_pred             ECCCCeEEEEEEEchh--hCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhcC
Confidence            5678999999999754  22345667899999999999999999999999775444557899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--cccCCCCCCcEEEec-CCcEEEeecCcccc------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPP--IIHGNLTCDTIFIQH-NGLVKIGCDTYTHT------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~--iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~------~~~~~t~~y~a  152 (218)
                          .+++..+..|+.||+.||.|||+  ++  |+||||||+|||++. ++.+||+|||+|..      .+.+||+.|||
T Consensus       125 ----~l~~~~~~~~~~qi~~aL~ylH~--~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmA  198 (290)
T 3fpq_A          125 ----VMKIKVLRSWCRQILKGLQFLHT--RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMA  198 (290)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHT--SSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCccccC
Confidence                49999999999999999999999  66  999999999999974 79999999999875      45789999999


Q ss_pred             cccCC-CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR-PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~-~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+.. .++.          +|+|+||+.||.+...
T Consensus       199 PE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~  234 (290)
T 3fpq_A          199 PEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQN  234 (290)
T ss_dssp             GGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS
T ss_pred             HHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCc
Confidence            99833 3333          7999999999976443

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.1e-40  Score=275.56  Aligned_cols=168  Identities=20%  Similarity=0.337  Sum_probs=145.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++.....  .....+.+.+|+.+|+.++|||||+++++|.+.+    .+|||||||+||+|.++|....
T Consensus        45 ~~~~~~~vAiK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~----~~yiVmEy~~gg~L~~~i~~~~  118 (350)
T 4b9d_A           45 STEDGRQYVIKEINISRM--SSKEREESRREVAVLANMKHPNIVQYRESFEENG----SLYIVMDYCEGGDLFKRINAQK  118 (350)
T ss_dssp             ETTTCCEEEEEEEECTTS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCTTCBHHHHHHHTT
T ss_pred             ECCCCCEEEEEEEehHHC--CHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECC----EEEEEEeCCCCCcHHHHHHHcC
Confidence            567899999999985422  2455678999999999999999999999998754    6999999999999999998654


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .  ..+++..++.|+.||+.||.|||+  ++|+||||||+|||++.++.+||+|||++..        .+.+||+.||||
T Consensus       119 ~--~~~~e~~~~~~~~qi~~aL~ylH~--~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAP  194 (350)
T 4b9d_A          119 G--VLFQEDQILDWFVQICLALKHVHD--RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSP  194 (350)
T ss_dssp             T--CCCCHHHHHHHHHHHHHHHHHHHH--TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCH
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccccCH
Confidence            3  458999999999999999999999  7799999999999999999999999999875        345799999999


Q ss_pred             cc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+  +.+++.          +|+|++|+.||.+....+
T Consensus       195 E~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~  232 (350)
T 4b9d_A          195 EICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN  232 (350)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH
Confidence            97  444544          799999999998765544

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=7.5e-41  Score=272.52  Aligned_cols=167  Identities=16%  Similarity=0.222  Sum_probs=142.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++...... .......+.+|+.+|+.++|||||+++++|.+..    ++|+|||||+||+|.+++....
T Consensus        53 ~~~~~~~~AiK~i~k~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----~~yivmEy~~gG~L~~~i~~~~  127 (311)
T 4aw0_A           53 ELATSREYAIKILEKRHII-KENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE----KLYFGLSYAKNGELLKYIRKIG  127 (311)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEECCCTTEEHHHHHHHHS
T ss_pred             ECCCCCEEEEEEEEHHHCC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC----EEEEEEecCCCCCHHHHHHHcC
Confidence            5679999999999843211 1223567899999999999999999999998754    6999999999999999998763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                          .+++..+..++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||+|..          .+.+||+.||
T Consensus       128 ----~l~e~~~~~~~~qi~~al~ylH~--~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~Ym  201 (311)
T 4aw0_A          128 ----SFDETCTRFYTAEIVSALEYLHG--KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYV  201 (311)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccC
Confidence                49999999999999999999999  7799999999999999999999999999864          3468999999


Q ss_pred             cccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+  +.+++.          +|+|++|..||.+....+
T Consensus       202 APEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~  241 (311)
T 4aw0_A          202 SPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL  241 (311)
T ss_dssp             CHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             CHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            9997  344444          799999999998765443

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=3.4e-40  Score=272.33  Aligned_cols=163  Identities=17%  Similarity=0.256  Sum_probs=140.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..||+.||||++......    ..+.+.+|+.+|+.++|||||+++++|.+.+    .+|||||||+||+|.+++..  
T Consensus        95 ~~~tg~~vAiK~i~~~~~~----~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~----~~~ivmEy~~gg~L~~~l~~--  164 (346)
T 4fih_A           95 VRSSGKLVAVKKMDLRKQQ----RRELLFNEVVIMRDYQHENVVEMYNSYLVGD----ELWVVMEFLEGGALTDIVTH--  164 (346)
T ss_dssp             ETTTCCEEEEEEEEGGGCS----SGGGGHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEECCCTTEEHHHHHHH--
T ss_pred             ECCCCCEEEEEEEecCchh----HHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----EEEEEEeCCCCCcHHHHHHc--
Confidence            5679999999999854322    2346789999999999999999999998754    69999999999999999975  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..|+.||+.||.|||+  ++|+||||||+|||++.++.+||+|||++..        .+.+||+.||||
T Consensus       165 ---~~l~e~~~~~~~~qi~~aL~ylH~--~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAP  239 (346)
T 4fih_A          165 ---TRMNEEQIAAVCLAVLQALSVLHA--QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAP  239 (346)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCH
Confidence               249999999999999999999999  7799999999999999999999999999864        456899999999


Q ss_pred             cc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+  +.+++.          +|+|++|..||.+....+
T Consensus       240 Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~  277 (346)
T 4fih_A          240 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK  277 (346)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred             HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH
Confidence            97  334444          799999999998765443

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2.2e-39  Score=263.45  Aligned_cols=167  Identities=22%  Similarity=0.270  Sum_probs=140.0

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc-
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK-   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-   81 (218)
                      ..+|..||||++..    ......+.+.+|+.+|+.++|||||+++++|.+.+    .+|+|||||++|+|.++|.... 
T Consensus        40 ~~~~~~vAvK~l~~----~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~----~~~lV~Ey~~~G~L~~~l~~~~~  111 (299)
T 4asz_A           40 EQDKILVAVKTLKD----ASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD----PLIMVFEYMKHGDLNKFLRAHGP  111 (299)
T ss_dssp             ---CEEEEEEEECS----CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----SEEEEEECCTTCBHHHHHHHTSH
T ss_pred             CCCCEEEEEEEeCC----CChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC----EEEEEEEcCCCCcHHHHHHhcCc
Confidence            35788999999973    23456678999999999999999999999998754    4999999999999999998643 


Q ss_pred             --------ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------cc
Q psy238           82 --------RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IE  143 (218)
Q Consensus        82 --------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~  143 (218)
                              .....+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.+||+|||+++.          ..
T Consensus       112 ~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~--~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~  189 (299)
T 4asz_A          112 DAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS--QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGH  189 (299)
T ss_dssp             HHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTT
T ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh--CCcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCc
Confidence                    123469999999999999999999999  7799999999999999999999999999864          22


Q ss_pred             CCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          144 NKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       144 ~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ..||+.|||||+  +..++.          +|||+| |+.||.+....+
T Consensus       190 ~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~  238 (299)
T 4asz_A          190 TMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE  238 (299)
T ss_dssp             EEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH
T ss_pred             eecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH
Confidence            358999999997  344544          799998 899998776544

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.9e-39  Score=259.52  Aligned_cols=166  Identities=19%  Similarity=0.290  Sum_probs=133.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++...... .......+.+|+.+|+.++|||||++++++.+.+    .+|+||||+ +|+|.+++... 
T Consensus        34 ~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~----~~~ivmEy~-~g~L~~~l~~~-  106 (275)
T 3hyh_A           34 HTTTGQKVALKIINKKVLA-KSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKD----EIIMVIEYA-GNELFDYIVQR-  106 (275)
T ss_dssp             CTTTCCEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEEECC-CEEHHHHHHHS-
T ss_pred             ECCCCCEEEEEEEeHHHcC-CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC----EEEEEEeCC-CCCHHHHHHHc-
Confidence            6789999999999753222 2334567899999999999999999999997754    699999999 68999999865 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                         .++++..+..++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||+|..       .+.+||+.|+|||
T Consensus       107 ---~~l~e~~~~~~~~qi~~al~ylH~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE  181 (275)
T 3hyh_A          107 ---DKMSEQEARRFFQQIISAVEYCHR--HKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPE  181 (275)
T ss_dssp             ---CSCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCTTTEEECTTCCEEECCSSCC---------------CTTSCHH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCcccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccCChh
Confidence               349999999999999999999999  7799999999999999999999999999865       4578999999999


Q ss_pred             c--CCCCch-----------hhhhhhCCCCCCcchhhh
Q psy238          155 Y--GRPISG-----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       155 ~--~~~~~~-----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +  +.+++.           +|+|+||+.||.+....+
T Consensus       182 ~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~  219 (275)
T 3hyh_A          182 VISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV  219 (275)
T ss_dssp             HHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             hhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHH
Confidence            7  334332           799999999998765433

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.5e-39  Score=266.27  Aligned_cols=159  Identities=19%  Similarity=0.239  Sum_probs=136.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++.....         ..+|+.+|+.++|||||+++++|.+..    .+|||||||+||+|.+++....
T Consensus        79 ~~~~g~~vAiK~i~~~~~---------~~~E~~il~~l~HpnIV~l~~~~~~~~----~~~ivmEy~~gg~L~~~l~~~~  145 (336)
T 4g3f_A           79 DKQTGFQCAVKKVRLEVF---------RVEELVACAGLSSPRIVPLYGAVREGP----WVNIFMELLEGGSLGQLIKQMG  145 (336)
T ss_dssp             ETTTCCEEEEEEEETTTC---------CTHHHHTTTTCCCTTBCCEEEEEEETT----EEEEEECCCTTCBHHHHHHHHS
T ss_pred             ECCCCCEEEEEEECHHHh---------HHHHHHHHHhCCCCCCCcEEEEEEECC----EEEEEEeccCCCcHHHHHHHcC
Confidence            568999999999985321         246999999999999999999998754    6999999999999999998763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-cEEEeecCcccc-------------ccCCCc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHT-------------IENKKY  147 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~-------------~~~~~t  147 (218)
                          ++++..+..|+.||+.||.|||+  ++||||||||+|||++.+| .+||+|||++..             ...+||
T Consensus       146 ----~l~e~~~~~~~~qi~~aL~ylH~--~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT  219 (336)
T 4g3f_A          146 ----CLPEDRALYYLGQALEGLEYLHT--RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGT  219 (336)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHT--TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccC
Confidence                49999999999999999999999  7799999999999999987 699999999864             124799


Q ss_pred             cccccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          148 LSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       148 ~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +.|||||+  +.+++.          +|+|+||+.||.+....+
T Consensus       220 ~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~  263 (336)
T 4g3f_A          220 ETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP  263 (336)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC
T ss_pred             ccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH
Confidence            99999997  444544          799999999998765443

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=7.7e-39  Score=263.52  Aligned_cols=169  Identities=20%  Similarity=0.252  Sum_probs=137.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..    ......+.+.+|+.+|+.++|||||+++++|.+..    .+|+|||||++|+|.+++....
T Consensus        67 ~~~~~~~vAvK~l~~----~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~----~~~lV~Ey~~~G~L~~~l~~~~  138 (329)
T 4aoj_A           67 PEQDKMLVAVKALKE----ASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR----PLLMVFEYMRHGDLNRFLRSHG  138 (329)
T ss_dssp             C---CEEEEEEEESC----CSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----SEEEEEECCTTCBHHHHHHTSS
T ss_pred             cCCCCeEEEEEEECc----CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----EEEEEEEcCCCCcHHHHHHhcC
Confidence            346789999999973    33556678999999999999999999999998754    4999999999999999998653


Q ss_pred             c-----------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------
Q psy238           82 R-----------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------  141 (218)
Q Consensus        82 ~-----------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------  141 (218)
                      .           ...++++..++.|+.||+.||.|||+  ++||||||||+|||++.++.+||+|||+++.         
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~--~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~  216 (329)
T 4aoj_A          139 PDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG--LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRV  216 (329)
T ss_dssp             CC-----------CCSCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEEETTTEEEECCCC-------------
T ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc--CCeecccccHhhEEECCCCcEEEcccccceeccCCCccee
Confidence            2           12459999999999999999999999  7799999999999999999999999999864         


Q ss_pred             -ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          142 -IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       142 -~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                       ....||+.|||||+  +..++.          +|||+| |+.||.+....+.
T Consensus       217 ~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~  269 (329)
T 4aoj_A          217 GGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEA  269 (329)
T ss_dssp             ---CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHH
T ss_pred             cCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHH
Confidence             24578999999997  334444          799999 8999987765443

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4.1e-40  Score=267.83  Aligned_cols=166  Identities=17%  Similarity=0.214  Sum_probs=136.4

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|+.||||++.......  .....+.+|+.+|+.++|||||+++++|.+.+    .+|+|||||+||+|.+++.... 
T Consensus        49 ~~~~~~vAiK~i~~~~~~~--~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----~~~ivmEy~~gg~L~~~l~~~~-  121 (304)
T 3ubd_A           49 SDARQLYAMKVLKKATLKV--RDRVRTKMERDILVEVNHPFIVKLHYAFQTEG----KLYLILDFLRGGDLFTRLSKEV-  121 (304)
T ss_dssp             TTTTCEEEEEEEESEEEEE--EECC------CCCCCCCCTTEECEEEEEEETT----EEEEEECCCTTCEEHHHHHHHC-
T ss_pred             CCCCEEEEEEEEehHHcCh--HHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC----EEEEEEEcCCCCCHHHHHHhcC-
Confidence            4678999999997543221  12235788999999999999999999998754    6999999999999999998763 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                         .+++..+..++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||+|..        .+.+||+.|||||
T Consensus       122 ---~l~e~~~~~~~~qi~~aL~ylH~--~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE  196 (304)
T 3ubd_A          122 ---MFTEEDVKFYLAELALALDHLHS--LGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPE  196 (304)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHHHH--TTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHH
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHH--CCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHH
Confidence               49999999999999999999999  7799999999999999999999999999864        4568999999999


Q ss_pred             c--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          155 Y--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      +  +.+++.          +|+|+||+.||.+....+.
T Consensus       197 ~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~  234 (304)
T 3ubd_A          197 VVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKET  234 (304)
T ss_dssp             HHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             HhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHH
Confidence            7  444444          7999999999987665443

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=273.83  Aligned_cols=163  Identities=17%  Similarity=0.256  Sum_probs=140.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++......    ..+.+.+|+.+|+.++|||||+++++|.+.+    .+|||||||+||+|.+++..  
T Consensus       172 ~~~tg~~vAiK~i~~~~~~----~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~----~~~iVmEy~~gG~L~~~i~~--  241 (423)
T 4fie_A          172 VRSSGKLVAVKKMDLRKQQ----RRELLFNEVVIMRDYQHENVVEMYNSYLVGD----ELWVVMEFLEGGALTDIVTH--  241 (423)
T ss_dssp             ETTTCCEEEEEEEESTTCS----SGGGHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCTTEEHHHHHHH--
T ss_pred             ECCCCCEEEEEEEeccchh----HHHHHHHHHHHHHhCCCCCCCceEEEEEECC----EEEEEEeCCCCCcHHHHHhc--
Confidence            5678999999999854322    2356889999999999999999999998754    69999999999999999965  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..+..|+.||+.||.|||+  ++||||||||+||||+.+|.+||+|||+|..        .+.+||+.||||
T Consensus       242 ---~~l~e~~~~~~~~qil~aL~ylH~--~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAP  316 (423)
T 4fie_A          242 ---TRMNEEQIAAVCLAVLQALSVLHA--QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAP  316 (423)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCH
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHH--CCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCH
Confidence               349999999999999999999999  7799999999999999999999999999864        456899999999


Q ss_pred             cc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+  +..++.          +|+|++|..||.+....+
T Consensus       317 Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~  354 (423)
T 4fie_A          317 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK  354 (423)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred             HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH
Confidence            97  334443          799999999998755443

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=257.99  Aligned_cols=159  Identities=20%  Similarity=0.243  Sum_probs=135.3

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||+++..  .......+.+.+|+.+|+.++|||||++++++...     .+|||||||+||+|.++|....   .+
T Consensus        59 ~~vAvK~~~~~--~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~-----~~~iVmEy~~gGsL~~~l~~~~---~~  128 (307)
T 3omv_A           59 GDVAVKILKVV--DPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD-----NLAIVTQWCEGSSLYKHLHVQE---TK  128 (307)
T ss_dssp             SEEEEEECCCS--SCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-----SCEEEEECCSSCBHHHHHHTSC---CC
T ss_pred             CcEEEEEEEec--CCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECC-----eEEEEEEcCCCCCHHHHHhhcC---CC
Confidence            46999999754  23355677899999999999999999999988543     3899999999999999997643   45


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccccccC
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTYG  156 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~~  156 (218)
                      +++..+..++.||+.||.|||+  ++||||||||+|||++.++.+||+|||+|..          ....||+.|||||+.
T Consensus       129 l~~~~~~~i~~qia~gL~yLH~--~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l  206 (307)
T 3omv_A          129 FQMFQLIDIARQTAQGMDYLHA--KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVI  206 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH--TTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH--CCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHh
Confidence            9999999999999999999999  7799999999999999999999999999864          345899999999973


Q ss_pred             -----CCCch----------hhhhhhCCCCCCcchh
Q psy238          157 -----RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       157 -----~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                           .+++.          +|||+||+.||.+...
T Consensus       207 ~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~  242 (307)
T 3omv_A          207 RMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN  242 (307)
T ss_dssp             HCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred             hccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCCh
Confidence                 13443          7999999999986554

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=2.6e-38  Score=258.19  Aligned_cols=169  Identities=17%  Similarity=0.156  Sum_probs=138.7

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||++....   .....+.+.+|+.+|+.++|||||+++++|.+..    .+|+|||||++|+|.++|.....
T Consensus        53 ~~~~~~VAvK~l~~~~---~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~----~~~lV~Ey~~~G~L~~~L~~~~~  125 (308)
T 4gt4_A           53 GEQTQAVAIKTLKDKA---EGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQ----PLSMIFSYCSHGDLHEFLVMRSP  125 (308)
T ss_dssp             ---CEEEEEEECCC-C---CC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCSSCBHHHHHHTTCS
T ss_pred             CCCCeEEEEEEECccc---ChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECC----EEEEEEEcCCCCcHHHHHHhhCc
Confidence            4578899999997432   2334567999999999999999999999997754    48999999999999999976421


Q ss_pred             ------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------
Q psy238           83 ------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------  141 (218)
Q Consensus        83 ------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------  141 (218)
                                  ....+++..+..++.||+.||.|||+  ++||||||||+|||++.++.+||+|||+++.         
T Consensus       126 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~--~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~  203 (308)
T 4gt4_A          126 HSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS--HHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKL  203 (308)
T ss_dssp             SCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCS
T ss_pred             cccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh--CCCCCCCccccceEECCCCCEEECCcccceeccCCCceeE
Confidence                        12358999999999999999999999  7799999999999999999999999999864         


Q ss_pred             -ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          142 -IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       142 -~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                       ....||+.|||||+  +..++.          +|||+| |..||.+....+.
T Consensus       204 ~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~  256 (308)
T 4gt4_A          204 LGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDV  256 (308)
T ss_dssp             SSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHH
T ss_pred             ecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHH
Confidence             34578999999997  344444          799998 8999988765443

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=5.2e-37  Score=249.61  Aligned_cols=164  Identities=19%  Similarity=0.306  Sum_probs=131.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--------CCCeEEEEEeccCCCCH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--------DKPRVIFITEYMSSGSL   73 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--------~~~~~~lv~e~~~~~sL   73 (218)
                      |..+|+.||||++...   ......+.+.+|+.+|+.++|||||+++++|.+.+.        ...++|+|||||++|+|
T Consensus        26 ~~~~~~~vAiK~i~~~---~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L  102 (299)
T 4g31_A           26 NKVDDCNYAIKRIRLP---NRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENL  102 (299)
T ss_dssp             ETTTCCEEEEEEEEEC---SSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCH
T ss_pred             ECCCCCEEEEEEEecc---CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcH
Confidence            5678999999999753   234556789999999999999999999999876432        23458999999999999


Q ss_pred             HHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------
Q psy238           74 KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------  141 (218)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------  141 (218)
                      .+++..... ....+...++.++.||+.||.|||+  ++|+||||||+|||++.++.+||+|||++..            
T Consensus       103 ~~~l~~~~~-~~~~~~~~~~~i~~qi~~al~ylH~--~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~  179 (299)
T 4g31_A          103 KDWMNGRCT-IEERERSVCLHIFLQIAEAVEFLHS--KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLT  179 (299)
T ss_dssp             HHHHHTCCS-GGGSCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTCCEEECCCCCC--------------
T ss_pred             HHHHHhcCC-CChhHHHHHHHHHHHHHHHHHHHHH--CcCccccCcHHHeEECCCCcEEEccCccceecCCCcccccccc
Confidence            999986532 2235677899999999999999999  7799999999999999999999999999864            


Q ss_pred             --------ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCc
Q psy238          142 --------IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       142 --------~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~  174 (218)
                              .+.+||+.|||||+  +.+++.          +|+|++   ||..
T Consensus       180 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~  229 (299)
T 4g31_A          180 PMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFST  229 (299)
T ss_dssp             ------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSS
T ss_pred             ccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCC
Confidence                    12469999999997  445554          688885   7754

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=255.60  Aligned_cols=170  Identities=17%  Similarity=0.231  Sum_probs=142.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC--CCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH--NDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~--~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..||+.||||++...  .........+.+|+.+|+.++|||||++++++....  .+...+|||||||+ |+|.+++..
T Consensus        75 ~~~t~~~vAiK~i~~~--~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~~i~~  151 (398)
T 4b99_A           75 RRLTGQQVAIKKIPNA--FDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLHQIIHS  151 (398)
T ss_dssp             ETTTCCEEEEEEETTT--TSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHHHHHTS
T ss_pred             ECCCCCEEEEEEECcc--ccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHHHHHHh
Confidence            5789999999999743  233456678899999999999999999999987542  23457999999995 789999975


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKY  147 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t  147 (218)
                      .    .++++..+..++.||+.||.|||+  +||+||||||+|||++.++.++|+|||++..            .+.+||
T Consensus       152 ~----~~l~~~~~~~~~~qil~al~ylH~--~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT  225 (398)
T 4b99_A          152 S----QPLTLEHVRYFLYQLLRGLKYMHS--AQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVAT  225 (398)
T ss_dssp             S----SCCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCC
T ss_pred             c----CCCCHHHHHHHHHHHHHHHHHHHH--CcCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeC
Confidence            4    459999999999999999999999  7799999999999999999999999999864            356899


Q ss_pred             cccccccc--CCC-Cch----------hhhhhhCCCCCCcchhhhh
Q psy238          148 LSATRQTY--GRP-ISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       148 ~~y~aPE~--~~~-~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      +.|+|||+  +.. ++.          +|+|++|..||.+....+.
T Consensus       226 ~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~  271 (398)
T 4b99_A          226 RWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQ  271 (398)
T ss_dssp             CTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHH
T ss_pred             hHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHH
Confidence            99999997  222 232          7999999999988765544

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3.8e-36  Score=245.09  Aligned_cols=160  Identities=18%  Similarity=0.151  Sum_probs=127.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|+.||||++...     .........|+.++..++|||||++++++...+.....+|+|||||++|+|.+++...   
T Consensus        24 ~~g~~VAvK~l~~~-----~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~---   95 (303)
T 3hmm_A           24 WRGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---   95 (303)
T ss_dssp             ETTEEEEEEEECGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC---
T ss_pred             ECCEEEEEEEECcc-----chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHhC---
Confidence            46899999999742     1122233456777788999999999999987654445789999999999999999763   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcC------CCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCC
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSC------SPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENK  145 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~------~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~  145 (218)
                        ++++..+..++.|++.||.|||+.      ..+|+||||||+|||++.++.+||+|||++..            ....
T Consensus        96 --~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~  173 (303)
T 3hmm_A           96 --TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRV  173 (303)
T ss_dssp             --CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeeccccc
Confidence              489999999999999999999972      02799999999999999999999999999864            1347


Q ss_pred             CcccccccccCCC--------Cch----------hhhhhhCCCCCC
Q psy238          146 KYLSATRQTYGRP--------ISG----------QYEIVTKTNNVT  173 (218)
Q Consensus       146 ~t~~y~aPE~~~~--------~~~----------~~ei~tg~~p~~  173 (218)
                      ||+.|||||+...        ++.          +|||+||..||.
T Consensus       174 GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~  219 (303)
T 3hmm_A          174 GTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGG  219 (303)
T ss_dssp             CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTT
T ss_pred             ccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCC
Confidence            9999999997331        111          799999987764

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=7.3e-36  Score=263.39  Aligned_cols=167  Identities=12%  Similarity=0.155  Sum_probs=137.9

Q ss_pred             CCCCCcEEEEEEeeccccc--ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERK--NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~--~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..||+.||||++......  ...........++.++..++|||||+++++|.+..    ++|||||||+||+|.++|..
T Consensus       210 ~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~----~lylVmEy~~GGdL~~~l~~  285 (689)
T 3v5w_A          210 KADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD----KLSFILDLMNGGDLHYHLSQ  285 (689)
T ss_dssp             ETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHH
T ss_pred             ECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECC----EEEEEEecCCCCcHHHHHHh
Confidence            4678999999999743211  11222233344567778889999999999998754    69999999999999999987


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQ  153 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aP  153 (218)
                      ..    .+++..++.|+.||+.||.|||+  +|||||||||+|||++.+|+++|+|||+|..      .+.+||+.||||
T Consensus       286 ~~----~l~E~~a~~y~~qIl~aL~yLH~--~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAP  359 (689)
T 3v5w_A          286 HG----VFSEADMRFYAAEIILGLEHMHN--RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP  359 (689)
T ss_dssp             HC----CCCHHHHHHHHHHHHHHHHHHHT--TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGGGCCH
T ss_pred             cC----CCCHHHHHHHHHHHHHHHHHHHH--CCccccCCchHHeEEeCCCCEEecccceeeecCCCCCCCccCCcCccCH
Confidence            63    49999999999999999999999  7799999999999999999999999999865      567999999999


Q ss_pred             ccC---CCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG---RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~---~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.   ..++.          +|+|++|..||.+....
T Consensus       360 Evl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~  397 (689)
T 3v5w_A          360 EVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK  397 (689)
T ss_dssp             HHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence            973   23433          79999999999865443

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.7e-36  Score=249.57  Aligned_cols=166  Identities=17%  Similarity=0.203  Sum_probs=137.4

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC-CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH-PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h-p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .+++.||||.+...   ........+.+|+.+|..+.| ||||+++++|...+   ..+|+|||||++|+|.++|.....
T Consensus        92 ~~~k~VAvK~l~~~---~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~---~~~~iV~Ey~~~G~L~~~L~~~~~  165 (353)
T 4ase_A           92 ATCRTVAVKMLKEG---ATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG---GPLMVIVEFCKFGNLSTYLRSKRN  165 (353)
T ss_dssp             TCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT---SCCEEEEECCTTEEHHHHHHHTGG
T ss_pred             cCCeEEEEEEEccc---cChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecC---CEEEEEEEcCCCCCHHHHHHhccc
Confidence            35578999999742   234556789999999999955 99999999987643   258999999999999999987543


Q ss_pred             c------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------
Q psy238           83 N------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------  141 (218)
Q Consensus        83 ~------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------  141 (218)
                      .            ...+++..+..++.||+.||.|||+  ++||||||||+|||++.++.+||+|||+|+.         
T Consensus       166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~--~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~  243 (353)
T 4ase_A          166 EFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS--RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVR  243 (353)
T ss_dssp             GBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEE
T ss_pred             ccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh--CCeecCccCccceeeCCCCCEEECcchhhhhcccCCCcee
Confidence            1            2348899999999999999999999  7799999999999999999999999999964         


Q ss_pred             -ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchh
Q psy238          142 -IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       142 -~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                       ....||+.|||||+  +..++.          +|||+| |+.||.+...
T Consensus       244 ~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~  293 (353)
T 4ase_A          244 KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI  293 (353)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred             eccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH
Confidence             23467899999997  444544          799998 9999987653

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=9.6e-35  Score=255.12  Aligned_cols=166  Identities=16%  Similarity=0.281  Sum_probs=141.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++...    .....+.+.+|+.+|+.++|||||+++++|.+..    .+|||||||+||+|.++|....
T Consensus       178 ~~~tg~~~AiK~i~~~----~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~----~~~iv~E~~~gg~L~~~i~~~~  249 (573)
T 3uto_A          178 ERATGNNFAAKFVMTP----HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN----EMVMIYEFMSGGELFEKVADEH  249 (573)
T ss_dssp             ETTTCCEEEEEEEECC----SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSS----EEEEEEECCCCCBHHHHHTCTT
T ss_pred             ECCCCCEEEEEEEecc----chhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECC----EEEEEEeecCCCcHHHHHHHhC
Confidence            5679999999999742    2445677899999999999999999999998754    6999999999999999996542


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC--CcEEEeecCcccc-------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN--GLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~--~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                         ..+++..+..++.||+.||.|||+  ++|+||||||+|||++.+  +.++|+|||++..       ...+||+.|+|
T Consensus       250 ---~~l~e~~~~~~~~qi~~al~ylH~--~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~A  324 (573)
T 3uto_A          250 ---NKMSEDEAVEYMRQVCKGLCHMHE--NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAA  324 (573)
T ss_dssp             ---SCEEHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccC
Confidence               359999999999999999999999  779999999999999854  8999999999875       45689999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ||+  +.+++.          +|+|++|..||.+....+.
T Consensus       325 PEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~  364 (573)
T 3uto_A          325 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET  364 (573)
T ss_dssp             HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH
Confidence            997  444443          6899999999987665443

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.4e-34  Score=241.11  Aligned_cols=157  Identities=10%  Similarity=0.136  Sum_probs=130.8

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+++.||||.+....      ....+.+|+.+|..+ +||||++++++|.+.+    ++|+||||++|++|.+++.   
T Consensus        46 ~~~~~~vAiK~i~~~~------~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~----~~~lvmE~~~g~~L~~~~~---  112 (361)
T 4f9c_A           46 VGPEEKIALKHLIPTS------HPIRIAAELQCLTVAGGQDNVMGVKYCFRKND----HVVIAMPYLEHESFLDILN---  112 (361)
T ss_dssp             TSCEEEEEEEEECTTS------CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETT----EEEEEEECCCCCCHHHHHT---
T ss_pred             CCCCCEEEEEEEcccc------CHHHHHHHHHHHHHhcCCCCCceEEEEEEECC----EEEEEEeCCCcccHHHHHc---
Confidence            4578899999886421      234578899999988 6999999999998754    6999999999999999983   


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc-------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT-------------------  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~-------------------  141 (218)
                          .+++..+..++.||+.||.|||+  +||+||||||+|||++.+ +.++|+|||+|+.                   
T Consensus       113 ----~l~~~~~~~~~~qll~al~ylH~--~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~  186 (361)
T 4f9c_A          113 ----SLSFQEVREYMLNLFKALKRIHQ--FGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQE  186 (361)
T ss_dssp             ----TCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC-------
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCcccccccccccccccc
Confidence                38999999999999999999999  779999999999999877 8999999999853                   


Q ss_pred             -----------------ccCCCccccccccc--CCC-Cch----------hhhhhhCCCCCCcchhh
Q psy238          142 -----------------IENKKYLSATRQTY--GRP-ISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       142 -----------------~~~~~t~~y~aPE~--~~~-~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                                       .+.+||++|+|||+  +.+ ++.          +|+|++|+.||.....+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~  253 (361)
T 4f9c_A          187 RCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDD  253 (361)
T ss_dssp             -------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSH
T ss_pred             ccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCH
Confidence                             23479999999996  322 333          69999999999655443

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=2.9e-32  Score=224.46  Aligned_cols=166  Identities=19%  Similarity=0.256  Sum_probs=142.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++...  .........+.+|+.+|+.++||||+++++++....    .+|+||||+++++|.+++....
T Consensus        36 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  109 (328)
T 3fe3_A           36 HILTGREVAIKIIDKT--QLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEK----TLYLIMEYASGGEVFDYLVAHG  109 (328)
T ss_dssp             ETTTCCEEEEEEEEGG--GSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCTTCBHHHHHHHHC
T ss_pred             ECCCCCEEEEEEEEhh--cCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC----EEEEEEECCCCCcHHHHHHHcC
Confidence            4578999999999754  223456678899999999999999999999997643    6999999999999999998763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                          .+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....||+.|+|||
T Consensus       110 ----~l~~~~~~~~~~qi~~al~~lH~--~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE  183 (328)
T 3fe3_A          110 ----RMKEKEARSKFRQIVSAVQYCHQ--KRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPE  183 (328)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccCCcceeCcc
Confidence                49999999999999999999999  7799999999999999999999999999864       4568999999999


Q ss_pred             c--CCCCc-h----------hhhhhhCCCCCCcchhhh
Q psy238          155 Y--GRPIS-G----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       155 ~--~~~~~-~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +  +..++ .          +++|++|..||.+....+
T Consensus       184 ~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~  221 (328)
T 3fe3_A          184 LFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKE  221 (328)
T ss_dssp             HHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             cccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHH
Confidence            7  33332 2          699999999998765544

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.98  E-value=1.3e-31  Score=221.35  Aligned_cols=166  Identities=16%  Similarity=0.193  Sum_probs=138.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++...... .......+.+|+.+|..++||||+++++++.+..    .+|+||||++|++|..++....
T Consensus        26 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~~  100 (337)
T 1o6l_A           26 EKATGRYYAMKILRKEVII-AKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD----RLCFVMEYANGGELFFHLSRER  100 (337)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS----EEEEEEECCTTCBHHHHHHHHS
T ss_pred             ECCCCCEEEEEEEeHHHhh-hhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCC----EEEEEEeCCCCCcHHHHHHhcC
Confidence            3568999999999743111 1223456889999999999999999999997754    6999999999999999998653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .+++..++.++.||+.||.|||+  ++|+||||+|+|||++.++.++|+|||++..        ....||+.|+||
T Consensus       101 ----~~~~~~~~~~~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  174 (337)
T 1o6l_A          101 ----VFTEERARFYGAEIVSALEYLHS--RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP  174 (337)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCG
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCCh
Confidence                49999999999999999999999  7799999999999999999999999998864        346789999999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.  ..++.          +|+|++|..||......
T Consensus       175 E~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~  211 (337)
T 1o6l_A          175 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE  211 (337)
T ss_dssp             GGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             hhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH
Confidence            973  23332          79999999999876543

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.98  E-value=8.5e-32  Score=223.78  Aligned_cols=167  Identities=16%  Similarity=0.214  Sum_probs=136.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++..... ........+..|+.++..+ +||||+++++++.+..    .+|+||||++|++|..++...
T Consensus        44 ~~~~~~~~AvK~~~~~~~-~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~  118 (353)
T 3txo_A           44 VKETGDLYAVKVLKKDVI-LQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPD----RLFFVMEFVNGGDLMFHIQKS  118 (353)
T ss_dssp             ETTTCCEEEEEEEEHHHH-HHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHHH
T ss_pred             EcCCCCEEEEEEEEHHHh-cchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCC----EEEEEEeCCCCCcHHHHHHHc
Confidence            456899999999974311 1123445678899999988 7999999999997754    699999999999999999876


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..        ...+||+.|+|
T Consensus       119 ~----~~~~~~~~~~~~qi~~aL~~LH~--~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~a  192 (353)
T 3txo_A          119 R----RFDEARARFYAAEIISALMFLHD--KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIA  192 (353)
T ss_dssp             S----SCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCC
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCCcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEC
Confidence            3    49999999999999999999999  7799999999999999999999999998864        45679999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+..  .++.          +|+|++|..||.+....+
T Consensus       193 PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~  231 (353)
T 3txo_A          193 PEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD  231 (353)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             hhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH
Confidence            99722  2222          799999999998766544

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.97  E-value=4.2e-31  Score=214.02  Aligned_cols=166  Identities=17%  Similarity=0.227  Sum_probs=138.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++.... .........+.+|+.++..++||||+++++++....    .+|+||||+++++|.+++....
T Consensus        32 ~~~~~~~vaiK~~~~~~-~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~g~~L~~~l~~~~  106 (294)
T 4eqm_A           32 DTILNIKVAIKAIFIPP-REKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDD----CYYLVMEYIEGPTLSEYIESHG  106 (294)
T ss_dssp             ETTTCSEEEEEEEECCS-SCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHHHC
T ss_pred             ECCCCCeEEEEEeccCc-cccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCC----eEEEEEeCCCCCCHHHHHHhcC
Confidence            45789999999987542 233556678999999999999999999999987643    6899999999999999998763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          ++++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....||+.|+|
T Consensus       107 ----~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~a  180 (294)
T 4eqm_A          107 ----PLSVDTAINFTNQILDGIKHAHD--MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFS  180 (294)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccC
Confidence                49999999999999999999999  7799999999999999999999999998864         23468999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+  +..++.          +|++++|..||.+....
T Consensus       181 PE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~  218 (294)
T 4eqm_A          181 PEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV  218 (294)
T ss_dssp             HHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH
T ss_pred             HhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH
Confidence            996  333332          69999999999876543

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.97  E-value=2e-31  Score=218.50  Aligned_cols=166  Identities=19%  Similarity=0.284  Sum_probs=139.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++...... .......+.+|+.++..++||||+++++++.+..    .+|+||||++|++|.+++....
T Consensus        27 ~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~----~~~lv~e~~~gg~L~~~l~~~~  101 (318)
T 1fot_A           27 SRHNGRYYAMKVLKKEIVV-RLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ----QIFMIMDYIEGGELFSLLRKSQ  101 (318)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHHTS
T ss_pred             ECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCC----EEEEEEeCCCCCCHHHHHHHcC
Confidence            3568999999999743111 1123456788999999999999999999997644    6999999999999999998653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCccccccccc-
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTY-  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~-  155 (218)
                          .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..     ....||+.|+|||+ 
T Consensus       102 ----~~~~~~~~~~~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~  175 (318)
T 1fot_A          102 ----RFPNPVAKFYAAEVCLALEYLHS--KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVV  175 (318)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHT--TTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCccccCCChheEEEcCCCCEEEeecCcceecCCccccccCCccccCHhHh
Confidence                49999999999999999999999  7799999999999999999999999999865     45689999999997 


Q ss_pred             -CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          156 -GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       156 -~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                       +..++.          +|+|++|..||.+....
T Consensus       176 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~  209 (318)
T 1fot_A          176 STKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM  209 (318)
T ss_dssp             TTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             cCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence             223332          79999999999876543

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.97  E-value=2.8e-31  Score=215.49  Aligned_cols=162  Identities=19%  Similarity=0.288  Sum_probs=138.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++.....    .....+.+|+.++..++||||+++++++....    .+|+||||+++++|.+++... 
T Consensus        41 ~~~~~~~vaiK~~~~~~~----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~-  111 (297)
T 3fxz_A           41 DVATGQEVAIRQMNLQQQ----PKKELIINEILVMRENKNPNIVNYLDSYLVGD----ELWVVMEYLAGGSLTDVVTET-  111 (297)
T ss_dssp             BTTTCCEEEEEEEEGGGC----SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCTTCBHHHHHHHS-
T ss_pred             ECCCCcEEEEEEeecccc----cHHHHHHHHHHHHhcCCCCCCCeEeEEEEECC----EEEEEEECCCCCCHHHHHhhc-
Confidence            567899999999985432    22456889999999999999999999998754    589999999999999999763 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+||
T Consensus       112 ----~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  185 (297)
T 3fxz_A          112 ----CMDEGQIAAVCRECLQALEFLHS--NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP  185 (297)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccCh
Confidence                38999999999999999999999  7799999999999999999999999998754        345789999999


Q ss_pred             cc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+  +..++.          +|+|++|..||......
T Consensus       186 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~  222 (297)
T 3fxz_A          186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL  222 (297)
T ss_dssp             HHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             hhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            97  334333          69999999999765443

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.97  E-value=2.7e-31  Score=220.49  Aligned_cols=167  Identities=16%  Similarity=0.220  Sum_probs=139.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+.+|+.+|..++||||+++++++.+..    .+|+||||++|++|.+++....
T Consensus        62 ~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~gg~L~~~l~~~~  136 (350)
T 1rdq_E           62 HKESGNHYAMKILDKQKVV-KLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS----NLYMVMEYVAGGEMFSHLRRIG  136 (350)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEEECCTTCBHHHHHHHHC
T ss_pred             ECCCCCEEEEEEEEhHHhc-cHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC----EEEEEEcCCCCCcHHHHHHHcC
Confidence            3568999999999743211 1123467889999999999999999999997643    6999999999999999998763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCccccccccc-
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTY-  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~-  155 (218)
                          .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..     ....||+.|+|||+ 
T Consensus       137 ----~~~~~~~~~~~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~  210 (350)
T 1rdq_E          137 ----RFSEPHARFYAAQIVLTFEYLHS--LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEII  210 (350)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCcccccCccceEEECCCCCEEEcccccceeccCCcccccCCccccCHHHh
Confidence                49999999999999999999999  7799999999999999999999999999875     45678999999997 


Q ss_pred             -CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          156 -GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 -~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                       +..++.          +|+|++|..||.+....+
T Consensus       211 ~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~  245 (350)
T 1rdq_E          211 LSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ  245 (350)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             cCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH
Confidence             333333          799999999998765433

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.97  E-value=3e-31  Score=216.37  Aligned_cols=171  Identities=16%  Similarity=0.152  Sum_probs=140.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++.... .........+.+|+.++..++||||+++++++......+...|+||||+++++|.+++....
T Consensus        33 ~~~~~~~vavK~~~~~~-~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~  111 (311)
T 3ork_A           33 DLRDHRDVAVKVLRADL-ARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEG  111 (311)
T ss_dssp             ETTTTEEEEEEEECTTT-TTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHHC
T ss_pred             ECCCCceEEEEEeCccc-cCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhcC
Confidence            45789999999998532 22355667889999999999999999999998876554456799999999999999998653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y  150 (218)
                          .+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..           ....||+.|
T Consensus       112 ----~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y  185 (311)
T 3ork_A          112 ----PMTPKRAIEVIADACQALNFSHQ--NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQY  185 (311)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTT
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCccc
Confidence                49999999999999999999999  7799999999999999999999999998864           234589999


Q ss_pred             ccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          151 TRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       151 ~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +|||+  +..++.          +|+|++|..||.+....+
T Consensus       186 ~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~  226 (311)
T 3ork_A          186 LSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS  226 (311)
T ss_dssp             CCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             CCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH
Confidence            99997  333333          699999999998765544

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.97  E-value=7.3e-31  Score=217.48  Aligned_cols=163  Identities=20%  Similarity=0.248  Sum_probs=138.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++..... ........+.+|+.++..+ +||||+++++++.+..    .+|+||||+++++|.+++...
T Consensus        30 ~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~----~~~lv~e~~~gg~L~~~l~~~  104 (345)
T 3a8x_A           30 LKKTDRIYAMKVVKKELV-NDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES----RLFFVIEYVNGGDLMFHMQRQ  104 (345)
T ss_dssp             ETTTTEEEEEEEEEGGGS-CSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHHH
T ss_pred             ECCCCCEEEEEEEEhHHh-cchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCC----EEEEEEeCCCCCcHHHHHHHc
Confidence            356899999999985432 2345567788999999887 8999999999997644    699999999999999999875


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus       105 ~----~l~~~~~~~~~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~a  178 (345)
T 3a8x_A          105 R----KLPEEHARFYSAEISLALNYLHE--RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIA  178 (345)
T ss_dssp             S----SCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCC
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccC
Confidence            3    49999999999999999999999  7799999999999999999999999998864        34678999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcc
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ||+  +..++.          +|+|++|..||...
T Consensus       179 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  213 (345)
T 3a8x_A          179 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  213 (345)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTT
T ss_pred             ccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCc
Confidence            997  333332          79999999999753

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.97  E-value=4e-31  Score=221.94  Aligned_cols=166  Identities=15%  Similarity=0.209  Sum_probs=139.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++...... .......+.+|+.+|..++||||++++++|.+..    .+|+||+|+.|++|..++... 
T Consensus        36 ~~~~~~~~AiK~~~~~~~~-~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~----~~~lv~e~~~gg~L~~~l~~~-  109 (384)
T 4fr4_A           36 KNDTKKMYAMKYMNKQKCV-ERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE----DMFMVVDLLLGGDLRYHLQQN-  109 (384)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEECCCTTEEHHHHHHTT-
T ss_pred             ECCCCCEEEEEEEehhhcc-cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC----EEEEEEecCCCCcHHHHHHhc-
Confidence            4568899999999743211 1223467889999999999999999999998754    699999999999999999864 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                         ..+++..++.++.||+.||.|||+  .||+||||+|+|||++.++.++|+|||++..       ....||+.|+|||
T Consensus       110 ---~~l~~~~~~~~~~qi~~aL~~LH~--~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE  184 (384)
T 4fr4_A          110 ---VHFKEETVKLFICELVMALDYLQN--QRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPE  184 (384)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGG
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCceeccCcHHHeEECCCCCEEEeccceeeeccCCCceeccCCCccccCCe
Confidence               349999999999999999999999  7799999999999999999999999999864       4678999999999


Q ss_pred             cCC-----CCch----------hhhhhhCCCCCCcchhh
Q psy238          155 YGR-----PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       155 ~~~-----~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +..     .++.          +|+|++|..||......
T Consensus       185 ~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~  223 (384)
T 4fr4_A          185 MFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSST  223 (384)
T ss_dssp             GTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTS
T ss_pred             eeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCc
Confidence            742     2332          79999999999765443

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.97  E-value=6.1e-31  Score=216.26  Aligned_cols=167  Identities=19%  Similarity=0.188  Sum_probs=131.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||++..............+.+|+.+|..++||||+++++++....    .+|+||||+++++|.+++.... 
T Consensus        42 ~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~-  116 (327)
T 3a62_A           42 ANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG----KLYLILEYLSGGELFMQLEREG-  116 (327)
T ss_dssp             TTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS----CEEEEEECCTTEEHHHHHHHHS-
T ss_pred             CCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC----EEEEEEeCCCCCcHHHHHHhCC-
Confidence            46899999999975322222334556788999999999999999999997754    5999999999999999998653 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                         .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+|||
T Consensus       117 ---~~~~~~~~~~~~qi~~al~~lH~--~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  191 (327)
T 3a62_A          117 ---IFMEDTACFYLAEISMALGHLHQ--KGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPE  191 (327)
T ss_dssp             ---SCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHH
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHh--CCEEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHh
Confidence               48999999999999999999999  7799999999999999999999999998764        3457899999999


Q ss_pred             c--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          155 Y--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +  +..++.          +|+|++|..||.+....+
T Consensus       192 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~  228 (327)
T 3a62_A          192 ILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK  228 (327)
T ss_dssp             HHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             hCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH
Confidence            7  333332          799999999998765443

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.97  E-value=3.7e-31  Score=219.32  Aligned_cols=167  Identities=17%  Similarity=0.231  Sum_probs=138.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|+.||||++...... .......+..|..++..+ +||||+++++++.+..    .+|+||||++||+|.+++...
T Consensus        38 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~  112 (345)
T 1xjd_A           38 FKKTNQFFAIKALKKDVVL-MDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE----NLFFVMEYLNGGDLMYHIQSC  112 (345)
T ss_dssp             ETTTTEEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS----EEEEEEECCTTCBHHHHHHHH
T ss_pred             ECCCCCEEEEEEEEhHHhh-hhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC----EEEEEEeCCCCCcHHHHHHHc
Confidence            3568999999999743111 112345677888888876 9999999999997754    699999999999999999875


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ...+||+.|+|
T Consensus       113 ~----~~~~~~~~~~~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~a  186 (345)
T 1xjd_A          113 H----KFDLSRATFYAAEIILGLQFLHS--KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIA  186 (345)
T ss_dssp             S----SCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCC
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCC
Confidence            3    49999999999999999999999  7799999999999999999999999998864        45678999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+  +..++.          +|+|++|..||.+....+
T Consensus       187 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~  225 (345)
T 1xjd_A          187 PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE  225 (345)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             hhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHH
Confidence            997  333333          799999999998765543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.97  E-value=3.1e-31  Score=223.43  Aligned_cols=163  Identities=20%  Similarity=0.247  Sum_probs=135.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++..... ........+..|..++..+ +||||++++++|.+..    .+|+||||++|++|..++...
T Consensus        73 ~~~~~~~~AvK~~~k~~~-~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~----~~~lV~E~~~gg~L~~~l~~~  147 (396)
T 4dc2_A           73 LKKTDRIYAMRVVKKELV-NDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES----RLFFVIEYVNGGDLMFHMQRQ  147 (396)
T ss_dssp             ETTTTEEEEEEEEEGGGT-C----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSS----EEEEEEECCTTCBHHHHHHHH
T ss_pred             ECCCCCEEEEEEEEhhhc-cCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECC----EEEEEEEcCCCCcHHHHHHHc
Confidence            356889999999985322 2233445678899998876 8999999999997654    699999999999999999875


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..        ...+||+.|+|
T Consensus       148 ~----~l~~~~~~~~~~qi~~aL~~LH~--~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~a  221 (396)
T 4dc2_A          148 R----KLPEEHARFYSAEISLALNYLHE--RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIA  221 (396)
T ss_dssp             S----SCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCC
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCEEeccCCHHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCC
Confidence            3    49999999999999999999999  7799999999999999999999999999864        45689999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcc
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ||+  +..++.          +|+|++|..||...
T Consensus       222 PE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~  256 (396)
T 4dc2_A          222 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  256 (396)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred             chhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccc
Confidence            997  333333          79999999999754

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.97  E-value=6.7e-31  Score=219.00  Aligned_cols=168  Identities=21%  Similarity=0.303  Sum_probs=139.4

Q ss_pred             CCCCCcEEEEEEeeccccccc--HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNF--KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~--~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||||++........  ......+.+|+.+|..++||||++++++|.+..    .+|+||||++|++|.+++..
T Consensus        33 ~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~----~~~lv~e~~~gg~L~~~l~~  108 (361)
T 2yab_A           33 EKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRT----DVVLILELVSGGELFDFLAQ  108 (361)
T ss_dssp             ETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHTT
T ss_pred             ECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCC----EEEEEEEcCCCCcHHHHHHh
Confidence            456899999999985432211  113467889999999999999999999997643    69999999999999999975


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC----cEEEeecCcccc-------ccCCCcc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG----LVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~----~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      .    ..+++..++.++.||+.||.|||+  .||+||||+|+|||++.++    .++|+|||++..       ....||+
T Consensus       109 ~----~~l~~~~~~~i~~qi~~aL~~LH~--~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~  182 (361)
T 2yab_A          109 K----ESLSEEEATSFIKQILDGVNYLHT--KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTP  182 (361)
T ss_dssp             C----SCCBHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCG
T ss_pred             c----CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCc
Confidence            4    359999999999999999999999  7799999999999998776    799999999865       3467999


Q ss_pred             cccccccC--CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          149 SATRQTYG--RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       149 ~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      .|+|||+.  .+++.          +|+|++|..||.+....+
T Consensus       183 ~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~  225 (361)
T 2yab_A          183 EFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE  225 (361)
T ss_dssp             GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH
T ss_pred             cEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            99999973  23333          799999999998765443

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.97  E-value=5.5e-31  Score=218.90  Aligned_cols=167  Identities=14%  Similarity=0.164  Sum_probs=138.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...... .......+..|..++..+ +||+|+++++++.+..    .+|+||||++|++|.+++...
T Consensus        41 ~~~~~~~~AiK~~~~~~~~-~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~  115 (353)
T 2i0e_A           41 RKGTDELYAVKILKKDVVI-QDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD----RLYFVMEYVNGGDLMYHIQQV  115 (353)
T ss_dssp             ETTEEEEEEEEEEEHHHHH-HTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHHH
T ss_pred             ECCCCCEEEEEEEEHHHhh-cchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCC----EEEEEEeCCCCCcHHHHHHhc
Confidence            3457889999999843211 122345678899999888 8999999999997644    699999999999999999875


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..++.++.||+.||.|||+  .||+||||+|+|||++.++.++|+|||++..        ...+||+.|+|
T Consensus       116 ~----~~~~~~~~~~~~qi~~aL~~LH~--~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~a  189 (353)
T 2i0e_A          116 G----RFKEPHAVFYAAEIAIGLFFLQS--KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIA  189 (353)
T ss_dssp             S----SCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCC
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccC
Confidence            3    49999999999999999999999  7799999999999999999999999998864        45678999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+  +.+++.          +|+|++|..||.+....+
T Consensus       190 PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~  228 (353)
T 2i0e_A          190 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE  228 (353)
T ss_dssp             HHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             hhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHH
Confidence            997  333333          799999999998765443

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.97  E-value=1.7e-31  Score=226.01  Aligned_cols=167  Identities=13%  Similarity=0.143  Sum_probs=137.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....... ......+.+|+.++..++||||++++++|.+..    .+|+||||++||+|.+++... 
T Consensus        90 ~~~~~~~~AiK~~~k~~~~~-~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~----~~~lV~E~~~gg~L~~~l~~~-  163 (410)
T 3v8s_A           90 HKSTRKVYAMKLLSKFEMIK-RSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR----YLYMVMEYMPGGDLVNLMSNY-  163 (410)
T ss_dssp             ETTTCCEEEEEEEEHHHHHH-TCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCTTEEHHHHHHHC-
T ss_pred             ECCCCcEEEEEEEehhhhhh-hHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC----EEEEEEeCCCCCcHHHHHHcC-
Confidence            35689999999997421100 111234778999999999999999999997644    699999999999999999753 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          .+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..         ...+||+.|+|
T Consensus       164 ----~~~e~~~~~~~~qi~~aL~~LH~--~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~A  237 (410)
T 3v8s_A          164 ----DVPEKWARFYTAEVVLALDAIHS--MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYIS  237 (410)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccC
Confidence                48999999999999999999999  7799999999999999999999999999854         36689999999


Q ss_pred             cccCC--C----Cch----------hhhhhhCCCCCCcchhhhh
Q psy238          153 QTYGR--P----ISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       153 PE~~~--~----~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ||+..  .    ++.          +|+|++|..||.+....+.
T Consensus       238 PE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~  281 (410)
T 3v8s_A          238 PEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGT  281 (410)
T ss_dssp             HHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             HHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhH
Confidence            99722  2    222          7999999999987655443

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.97  E-value=6.7e-31  Score=218.02  Aligned_cols=169  Identities=16%  Similarity=0.169  Sum_probs=138.4

Q ss_pred             CCCCCcEEEEEEeeccccccc-HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNF-KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~-~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++........ ......+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++...
T Consensus        45 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~----~~~lv~e~~~g~~L~~~l~~~  120 (351)
T 3c0i_A           45 NRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDG----MLYMVFEFMDGADLCFEIVKR  120 (351)
T ss_dssp             ETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCSSCBHHHHHHHH
T ss_pred             ECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC----EEEEEEeCCCCCCHHHHHHHh
Confidence            467899999999974321110 113467889999999999999999999998754    699999999999999988776


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc---EEEeecCcccc--------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL---VKIGCDTYTHT--------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~---~ki~dfg~~~~--------~~~~~t~~  149 (218)
                      ......+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.   ++|+|||++..        ....||+.
T Consensus       121 ~~~~~~~~~~~~~~i~~qi~~al~~lH~--~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~  198 (351)
T 3c0i_A          121 ADAGFVYSEAVASHYMRQILEALRYCHD--NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPH  198 (351)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGG
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHH--CCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcC
Confidence            5444568999999999999999999999  77999999999999986654   99999999865        34578999


Q ss_pred             ccccccC--CCCch----------hhhhhhCCCCCCcch
Q psy238          150 ATRQTYG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       150 y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+|||+.  ..++.          +|+|++|..||.+..
T Consensus       199 y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~  237 (351)
T 3c0i_A          199 FMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK  237 (351)
T ss_dssp             GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH
T ss_pred             ccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH
Confidence            9999973  33333          799999999998753

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.97  E-value=2.8e-30  Score=215.25  Aligned_cols=165  Identities=16%  Similarity=0.186  Sum_probs=138.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....  ........+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++... 
T Consensus        50 ~~~~~~~~avK~~~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~----~~~lv~e~~~gg~L~~~l~~~-  122 (362)
T 2bdw_A           50 HKTTGLEFAAKIINTKK--LSARDFQKLEREARICRKLQHPNIVRLHDSIQEES----FHYLVFDLVTGGELFEDIVAR-  122 (362)
T ss_dssp             ETTTCCEEEEEEEETTT--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHTTC-
T ss_pred             ECCCCCEEEEEEEEccc--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC----EEEEEEecCCCCCHHHHHHHc-
Confidence            45789999999998542  22445677899999999999999999999997654    689999999999999998754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC---CcEEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN---GLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~---~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.+   +.++|+|||++..       ....||+.|+
T Consensus       123 ---~~~~~~~~~~~~~qi~~al~~lH~--~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~  197 (362)
T 2bdw_A          123 ---EFYSEADASHCIQQILESIAYCHS--NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYL  197 (362)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCcccc
Confidence               348999999999999999999999  779999999999999765   4699999999865       3457899999


Q ss_pred             ccccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          152 RQTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       152 aPE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |||+.  ..++.          +|+|++|..||.+....
T Consensus       198 aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~  236 (362)
T 2bdw_A          198 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH  236 (362)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             CHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH
Confidence            99973  23333          79999999999765543

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=221.06  Aligned_cols=166  Identities=16%  Similarity=0.157  Sum_probs=140.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++...  .........+.+|+.+++.++||||+++++++.+..    .+|+||||++|++|.+++... 
T Consensus        32 ~~~~~~~~a~K~i~~~--~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~----~~~lv~E~~~gg~L~~~i~~~-  104 (444)
T 3soa_A           32 KVLAGQEYAAMIINTK--KLSARDHQKLEREARICRLLKHPNIVRLHDSISEEG----HHYLIFDLVTGGELFEDIVAR-  104 (444)
T ss_dssp             ETTTTEEEEEEEEESC--SCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSS----EEEEEECCCBCCBHHHHHHHC-
T ss_pred             ECCCCcEEEEEEEEcc--cCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECC----EEEEEEEeCCCCCHHHHHHHc-
Confidence            5678999999999854  222445677899999999999999999999997644    689999999999999999875 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe---cCCcEEEeecCcccc--------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ---HNGLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~---~~~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                         ..+++..+..++.||+.||.|||+  .+|+||||||+|||++   .++.++|+|||++..        ....||+.|
T Consensus       105 ---~~~~e~~~~~i~~qil~aL~~lH~--~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y  179 (444)
T 3soa_A          105 ---EYYSEADASHCIQQILEAVLHCHQ--MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGY  179 (444)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGG
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCccc
Confidence               349999999999999999999999  7799999999999998   458899999999864        345789999


Q ss_pred             cccccC--CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          151 TRQTYG--RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       151 ~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +|||+.  .+++.          +|+|++|..||.+....+
T Consensus       180 ~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~  220 (444)
T 3soa_A          180 LSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHR  220 (444)
T ss_dssp             CCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             CCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHH
Confidence            999973  23333          699999999997765443

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.3e-31  Score=224.36  Aligned_cols=169  Identities=12%  Similarity=0.160  Sum_probs=139.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++...... .......+.+|+.++..++||||++++++|.+..    .+|+||||++||+|.+++....
T Consensus        82 ~~~~~~~vAiK~l~k~~~~-~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~----~~~lVmE~~~gg~L~~~l~~~~  156 (412)
T 2vd5_A           82 MKQTGQVYAMKIMNKWDML-KRGEVSCFREERDVLVNGDRRWITQLHFAFQDEN----YLYLVMEYYVGGDLLTLLSKFG  156 (412)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHHHS
T ss_pred             ECCCCCEEEEEEEeHHHhh-hHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC----EEEEEEcCCCCCcHHHHHHhcC
Confidence            3568999999999742111 1122345788999999999999999999997754    6999999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..         ...+||+.|+|
T Consensus       157 ---~~l~~~~~~~~~~qi~~aL~~LH~--~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~A  231 (412)
T 2vd5_A          157 ---ERIPAEMARFYLAEIVMAIDSVHR--LGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLS  231 (412)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeecccCHHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCC
Confidence               359999999999999999999999  7799999999999999999999999999854         23589999999


Q ss_pred             cccCC---------CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          153 QTYGR---------PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       153 PE~~~---------~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ||+..         .++.          +|+|++|..||.+....+.
T Consensus       232 PE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~  278 (412)
T 2vd5_A          232 PEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAET  278 (412)
T ss_dssp             HHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             HHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHH
Confidence            99732         1222          7999999999987665443

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.97  E-value=3.8e-31  Score=225.49  Aligned_cols=169  Identities=12%  Similarity=0.156  Sum_probs=138.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....... ......+.+|+.++..++||||++++++|.+..    .+|+||||++||+|.+++....
T Consensus        95 ~~~~~~~vAvK~~~~~~~~~-~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~----~~~lV~Ey~~gg~L~~~l~~~~  169 (437)
T 4aw2_A           95 LKNADKVFAMKILNKWEMLK-RAETACFREERDVLVNGDSKWITTLHYAFQDDN----NLYLVMDYYVGGDLLTLLSKFE  169 (437)
T ss_dssp             ETTTTEEEEEEEEEHHHHHH-TTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSS----EEEEEECCCTTCBHHHHHHTTT
T ss_pred             EcCCCcEEEEEEEEHHHhhh-HHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC----EEEEEEecCCCCcHHHHHHHcc
Confidence            34678999999997421110 112234788999999999999999999998754    6999999999999999998642


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..         ....||+.|+|
T Consensus       170 ---~~l~e~~~~~~~~qi~~aL~~LH~--~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~A  244 (437)
T 4aw2_A          170 ---DRLPEEMARFYLAEMVIAIDSVHQ--LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYIS  244 (437)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeC
Confidence               359999999999999999999999  7799999999999999999999999998854         23689999999


Q ss_pred             cccCC-------CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          153 QTYGR-------PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       153 PE~~~-------~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ||+..       .++.          +|+|++|..||.+....+.
T Consensus       245 PE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~  289 (437)
T 4aw2_A          245 PEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET  289 (437)
T ss_dssp             HHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             hHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHH
Confidence            99732       2222          7999999999987655443

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.97  E-value=3.2e-30  Score=216.40  Aligned_cols=169  Identities=16%  Similarity=0.168  Sum_probs=141.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....  ........+.+|+.+++.++||||+++++++.+..    .+|+||||+++++|.+++....
T Consensus        48 ~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  121 (389)
T 3gni_B           48 YKPTGEYVTVRRINLEA--CSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADN----ELWVVTSFMAYGSAKDLICTHF  121 (389)
T ss_dssp             ETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCTTCBHHHHHHHTC
T ss_pred             EcCCCCEEEEEEecccc--cChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECC----EEEEEEEccCCCCHHHHHhhhc
Confidence            45689999999998542  23456678889999999999999999999998754    6999999999999999998763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------------ccCCC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------------IENKK  146 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------------~~~~~  146 (218)
                      .  ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||.+..               ....|
T Consensus       122 ~--~~~~~~~~~~~~~qi~~~l~~LH~--~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~g  197 (389)
T 3gni_B          122 M--DGMNELAIAYILQGVLKALDYIHH--MGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVK  197 (389)
T ss_dssp             T--TCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTT
T ss_pred             c--cCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccc
Confidence            2  459999999999999999999999  7799999999999999999999999997643               22478


Q ss_pred             cccccccccCC----CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          147 YLSATRQTYGR----PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       147 t~~y~aPE~~~----~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+.|+|||+..    .++.          +++|++|..||.+....+.
T Consensus       198 t~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~  245 (389)
T 3gni_B          198 VLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQM  245 (389)
T ss_dssp             TGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTH
T ss_pred             cccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHH
Confidence            89999999732    3333          6999999999987655443

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.97  E-value=1.2e-30  Score=227.45  Aligned_cols=169  Identities=13%  Similarity=0.142  Sum_probs=140.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++....... ......+.+|+.+|..++||||++++++|.+..    .+|+||||++|++|.+++....
T Consensus       206 ~~~tg~~vAiK~l~k~~~~~-~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~----~l~lVmE~~~gg~L~~~l~~~~  280 (543)
T 3c4z_A          206 MKATGKLYACKKLNKKRLKK-RKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT----DLCLVMTIMNGGDIRYHIYNVD  280 (543)
T ss_dssp             ETTTCCEEEEEEEEHHHHHH-TTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCTTCBHHHHHHTSS
T ss_pred             ECCCCcEEEEEEEEhHHhhh-hHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCC----EEEEEEEeccCCCHHHHHHHhh
Confidence            35689999999997432111 123457889999999999999999999987643    6999999999999999998765


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .....+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..        ....||+.|+||
T Consensus       281 ~~~~~l~e~~~~~~~~qi~~aL~~LH~--~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~AP  358 (543)
T 3c4z_A          281 EDNPGFQEPRAIFYTAQIVSGLEHLHQ--RNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAP  358 (543)
T ss_dssp             TTSCSCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCH
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHH--cCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccCh
Confidence            334569999999999999999999999  7799999999999999999999999999864        234899999999


Q ss_pred             cc--CCCCch----------hhhhhhCCCCCCcchh
Q psy238          154 TY--GRPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+  +..++.          +|+|++|..||.....
T Consensus       359 E~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~  394 (543)
T 3c4z_A          359 ELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGE  394 (543)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTC
T ss_pred             hhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCcc
Confidence            97  333333          7999999999987643

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.97  E-value=3.5e-30  Score=209.71  Aligned_cols=162  Identities=24%  Similarity=0.330  Sum_probs=138.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+..    ........+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        31 ~~~~~~~va~K~~~~----~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  102 (310)
T 3s95_A           31 HRETGEVMVMKELIR----FDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDK----RLNFITEYIKGGTLRGIIKSMD  102 (310)
T ss_dssp             ETTTCCEEEEEEESC----CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT----EEEEEEECCTTCBHHHHHHHCC
T ss_pred             ECCCCcEEEEEEecc----CCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCC----eeEEEEEecCCCcHHHHHHhcc
Confidence            456899999998863    33566778999999999999999999999998754    6899999999999999998743


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-------------------  142 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-------------------  142 (218)
                         ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++...                   
T Consensus       103 ---~~~~~~~~~~i~~qi~~al~~lH~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~  177 (310)
T 3s95_A          103 ---SQYPWSQRVSFAKDIASGMAYLHS--MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRK  177 (310)
T ss_dssp             ---TTSCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSTTSEEECTTSCEEECCCTTCEECC------------------
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccc
Confidence               459999999999999999999999  77999999999999999999999999998641                   


Q ss_pred             ---cCCCccccccccc--CCCCch----------hhhhhhCCCCCCcch
Q psy238          143 ---ENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       143 ---~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                         ...||+.|+|||+  +..++.          ++++++|..|+....
T Consensus       178 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~  226 (310)
T 3s95_A          178 KRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYL  226 (310)
T ss_dssp             --CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTS
T ss_pred             cccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchh
Confidence               4578999999997  333333          699999999987543

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.97  E-value=1.6e-30  Score=217.54  Aligned_cols=167  Identities=19%  Similarity=0.248  Sum_probs=130.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHH-hhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFEN-LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~-l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++....... ......+..|..+ +..++||||++++++|.+..    .+|+||||++|++|.+++...
T Consensus        59 ~~~~~~~~AiK~~~~~~~~~-~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~  133 (373)
T 2r5t_A           59 HKAEEVFYAVKVLQKKAILK-KKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD----KLYFVLDYINGGELFYHLQRE  133 (373)
T ss_dssp             ETTTCCEEEEEEEEGGGBC--------------CCBCCCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHHH
T ss_pred             EcCCCCEEEEEEEEHHHhhh-hHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCC----EEEEEEeCCCCCcHHHHHHhc
Confidence            35678999999998543222 3344566777776 57789999999999997754    699999999999999999875


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ...+||+.|+|
T Consensus       134 ~----~~~~~~~~~~~~qi~~aL~~LH~--~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~a  207 (373)
T 2r5t_A          134 R----CFLEPRARFYAAEIASALGYLHS--LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLA  207 (373)
T ss_dssp             S----SCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCC
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHH--CCceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCccccC
Confidence            3    48999999999999999999999  7799999999999999999999999999864        35678999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+  +..++.          +|+|++|..||.+....+
T Consensus       208 PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~  246 (373)
T 2r5t_A          208 PEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE  246 (373)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHH
T ss_pred             HHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH
Confidence            997  333333          799999999998765543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.97  E-value=1.3e-30  Score=222.68  Aligned_cols=167  Identities=17%  Similarity=0.209  Sum_probs=131.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+.+|+.+++.++||||+++++++....    .+|+||||+++++|.+++....
T Consensus       169 ~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  243 (446)
T 4ejn_A          169 EKATGRYYAMKILKKEVI-VAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD----RLCFVMEYANGGELFFHLSRER  243 (446)
T ss_dssp             ETTTCCEEEEEEEEHHHH-C-------------CCCCCSCTTSCCEEEEEEETT----EEEEEECCCSSCBHHHHHHHHS
T ss_pred             EcCCCCEEEEEEEEhhhh-hhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCC----EEEEEEeeCCCCcHHHHHHhcC
Confidence            457899999999974321 12334566788999999999999999999998754    6999999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          .+++..++.++.||+.||.|||+ .+  |+||||+|+|||++.++.++|+|||++..        ....||+.|+|
T Consensus       244 ----~~~~~~~~~~~~qi~~aL~~LH~~~g--iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~a  317 (446)
T 4ejn_A          244 ----VFSEDRARFYGAEIVSALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLA  317 (446)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHHHTC--CCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHhhcCC--EEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccC
Confidence                49999999999999999999997 55  99999999999999999999999998864        45678999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+  +..++.          +++|++|..||......+
T Consensus       318 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~  356 (446)
T 4ejn_A          318 PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK  356 (446)
T ss_dssp             HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             HhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH
Confidence            997  333433          799999999998765543

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2e-30  Score=212.71  Aligned_cols=164  Identities=16%  Similarity=0.166  Sum_probs=138.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|.+...     ......+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        26 ~~~~~~~~a~K~~~~~-----~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~----~~~lv~e~~~g~~L~~~l~~~~   96 (321)
T 1tki_A           26 ETSSKKTYMAKFVKVK-----GTDQVLVKKEISILNIARHRNILHLHESFESME----ELVMIFEFISGLDIFERINTSA   96 (321)
T ss_dssp             ETTTTEEEEEEEECCC-----THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT----EEEEEECCCCCCBHHHHHTSSS
T ss_pred             ECCCCcEEEEEEEecC-----cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCC----EEEEEEEeCCCCCHHHHHHhcC
Confidence            4578999999999743     234566889999999999999999999997754    6999999999999999997542


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec--CCcEEEeecCcccc-------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH--NGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~--~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                         ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.  ++.++|+|||++..       ....+|+.|+|
T Consensus        97 ---~~~~~~~~~~i~~qi~~al~~lH~--~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a  171 (321)
T 1tki_A           97 ---FELNEREIVSYVHQVCEALQFLHS--HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYA  171 (321)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcC
Confidence               359999999999999999999999  77999999999999987  79999999999865       34568999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+..  .++.          +|+|++|..||.+....+
T Consensus       172 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~  210 (321)
T 1tki_A          172 PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ  210 (321)
T ss_dssp             HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             cHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH
Confidence            99733  2222          799999999998765543

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=212.34  Aligned_cols=168  Identities=21%  Similarity=0.306  Sum_probs=139.1

Q ss_pred             CCCCCcEEEEEEeeccccccc--HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNF--KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~--~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||||++........  ......+.+|+.+|..++||||+++++++.+..    .+++||||+++++|.+++..
T Consensus        32 ~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~  107 (326)
T 2y0a_A           32 EKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT----DVILILELVAGGELFDFLAE  107 (326)
T ss_dssp             ETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHTT
T ss_pred             ECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC----EEEEEEEcCCCCCHHHHHHh
Confidence            456899999999985432211  113467889999999999999999999997643    69999999999999999975


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC----cEEEeecCcccc-------ccCCCcc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG----LVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~----~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      .    ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++    .++|+|||++..       ....||+
T Consensus       108 ~----~~~~~~~~~~i~~qi~~al~~lH~--~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~  181 (326)
T 2y0a_A          108 K----ESLTEEEATEFLKQILNGVYYLHS--LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTP  181 (326)
T ss_dssp             S----SCCBHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCT
T ss_pred             c----CCcCHHHHHHHHHHHHHHHHHHHH--CCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCc
Confidence            4    459999999999999999999999  7799999999999998877    899999999865       3457899


Q ss_pred             cccccccC--CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          149 SATRQTYG--RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       149 ~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      .|+|||+.  ..++.          +|+|++|..||.+....+
T Consensus       182 ~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~  224 (326)
T 2y0a_A          182 EFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE  224 (326)
T ss_dssp             TTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH
T ss_pred             CcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH
Confidence            99999973  33333          699999999998765543

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.97  E-value=1.3e-29  Score=204.40  Aligned_cols=168  Identities=35%  Similarity=0.543  Sum_probs=142.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..++..||+|++...  .........+.+|+.++..++||||+++++++.....+...+++||||+++++|.+++....
T Consensus        47 ~~~~~~~va~k~~~~~--~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  124 (290)
T 1t4h_A           47 DTETTVEVAWCELQDR--KLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK  124 (290)
T ss_dssp             ETTTCCEEEEEEEEGG--GSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHS
T ss_pred             ecCCceEEEEEEecch--hhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHcc
Confidence            4578899999999854  22355677889999999999999999999998876555667999999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--cccCCCCCCcEEEe-cCCcEEEeecCcccc------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPP--IIHGNLTCDTIFIQ-HNGLVKIGCDTYTHT------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~--iiH~dlkp~NiLl~-~~~~~ki~dfg~~~~------~~~~~t~~y~a  152 (218)
                          .+++..++.++.||+.||.|||+  .+  |+|+||+|+|||++ .++.++|+|||++..      ....+|+.|+|
T Consensus       125 ----~~~~~~~~~~~~qi~~~l~~lH~--~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~a  198 (290)
T 1t4h_A          125 ----VMKIKVLRSWCRQILKGLQFLHT--RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMA  198 (290)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHT--SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHc--CCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCcCcCC
Confidence                49999999999999999999999  77  99999999999997 789999999999864      34678999999


Q ss_pred             cccCC-CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR-PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~-~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+.. .++.          +++|++|..||.....
T Consensus       199 PE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~  234 (290)
T 1t4h_A          199 PEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQN  234 (290)
T ss_dssp             GGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS
T ss_pred             HHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCc
Confidence            99733 2222          6999999999976544

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.97  E-value=6e-30  Score=214.10  Aligned_cols=165  Identities=15%  Similarity=0.177  Sum_probs=138.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...    .......+.+|+.+|..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus       110 ~~~~g~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~----~~~lv~E~~~~~~L~~~l~~~~  181 (373)
T 2x4f_A          110 ETATGLKLAAKIIKTR----GMKDKEEVKNEISVMNQLDHANLIQLYDAFESKN----DIVLVMEYVDGGELFDRIIDES  181 (373)
T ss_dssp             ETTTCCEEEEEEEECC----SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEEECCTTCEEHHHHHHTG
T ss_pred             EcCCCcEEEEEEEccc----ccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC----EEEEEEeCCCCCcHHHHHHhcC
Confidence            4568999999999842    2345677899999999999999999999997644    6899999999999999887643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE--ecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI--QHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl--~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||+  +.++.++|+|||++..       ....||+.|+|
T Consensus       182 ---~~l~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a  256 (373)
T 2x4f_A          182 ---YNLTELDTILFMKQICEGIRHMHQ--MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLA  256 (373)
T ss_dssp             ---GGCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeC
Confidence               348999999999999999999999  779999999999999  4568999999999865       34568999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+..  .++.          +++|++|..||.+....+
T Consensus       257 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~  295 (373)
T 2x4f_A          257 PEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAE  295 (373)
T ss_dssp             HHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             hhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            99732  2222          799999999998765543

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.97  E-value=7.5e-30  Score=213.20  Aligned_cols=168  Identities=18%  Similarity=0.253  Sum_probs=138.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .+|..||||++...   ........+.+|+.++..+ +||||+++++++.+..    .+|+||||+++++|.+++.....
T Consensus       111 ~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~~  183 (370)
T 2psq_A          111 KEAVTVAVKMLKDD---ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG----PLYVIVEYASKGNLREYLRARRP  183 (370)
T ss_dssp             TCEEEEEEEECCTT---CBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHTCC
T ss_pred             CcceeEEEEEecCC---cCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC----CEEEEEEcCCCCCHHHHHHhhCC
Confidence            45678999999743   2345667899999999999 8999999999997654    58999999999999999987532


Q ss_pred             c------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------
Q psy238           83 N------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------  141 (218)
Q Consensus        83 ~------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------  141 (218)
                      .            ...+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~  261 (370)
T 2psq_A          184 PGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS--QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK  261 (370)
T ss_dssp             C-----------CCCCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCT
T ss_pred             ccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh--CCeeccccchhhEEECCCCCEEEccccCCcccCcccceec
Confidence            1            1348899999999999999999999  7799999999999999999999999999864         


Q ss_pred             -ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          142 -IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       142 -~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                       ....+|+.|+|||+  +..++.          +|+|++ |..||.+...++.
T Consensus       262 ~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~  314 (370)
T 2psq_A          262 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEEL  314 (370)
T ss_dssp             TTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH
T ss_pred             ccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHH
Confidence             23456788999996  333333          689999 9999987655443

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.97  E-value=1.9e-30  Score=227.14  Aligned_cols=167  Identities=14%  Similarity=0.165  Sum_probs=139.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+.+|+.+|..++||||+++++++.+..    .+|+||||++||+|.+++....
T Consensus       205 ~~~tg~~vAvK~l~k~~~~-~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~----~l~lVmEy~~gg~L~~~l~~~~  279 (576)
T 2acx_A          205 VRATGKMYACKKLEKKRIK-KRKGEAMALNEKQILEKVNSRFVVSLAYAYETKD----ALCLVLTLMNGGDLKFHIYHMG  279 (576)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHSSS
T ss_pred             ECCCCCEEEEEEEEhHhhh-hhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCC----EEEEEEEcCCCCcHHHHHHhcC
Confidence            3568999999999743211 1223456789999999999999999999997644    6999999999999999998653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                      .  ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....||+.|+|||
T Consensus       280 ~--~~l~e~~~~~i~~qIl~aL~yLH~--~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APE  355 (576)
T 2acx_A          280 Q--AGFPEARAVFYAAEICCGLEDLHR--ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPE  355 (576)
T ss_dssp             S--CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGGCCHH
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHH--CCEeccCCchheEEEeCCCCeEEEecccceecccCccccccCCCccccCHH
Confidence            2  449999999999999999999999  7799999999999999999999999999864       4568999999999


Q ss_pred             cCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          155 YGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +..  .++.          +|+|++|..||.....
T Consensus       356 vl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~  390 (576)
T 2acx_A          356 VVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKK  390 (576)
T ss_dssp             HHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSS
T ss_pred             HHcCCCCCccchHHHHHHHHHHHHhCCCCCccccc
Confidence            732  2222          7999999999987644

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.2e-30  Score=213.93  Aligned_cols=162  Identities=17%  Similarity=0.244  Sum_probs=135.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+.+|+.+++.++||||+++++++....    .+++||||+ +|+|.+++....
T Consensus        30 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~----~~~lv~E~~-~g~l~~~l~~~~  103 (336)
T 3h4j_B           30 HYKTQQKVALKFISRQLLK-KSDMHMRVEREISYLKLLRHPHIIKLYDVITTPT----DIVMVIEYA-GGELFDYIVEKK  103 (336)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEECCC-CEEHHHHHHHHC
T ss_pred             ECCCCCEEEEEEEehHHcc-chhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC----EEEEEEECC-CCcHHHHHHHcC
Confidence            4578999999999742111 1112346889999999999999999999997754    689999999 689999988753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                          .+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....||+.|+|||
T Consensus       104 ----~l~~~~~~~i~~qi~~aL~~LH~--~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE  177 (336)
T 3h4j_B          104 ----RMTEDEGRRFFQQIICAIEYCHR--HKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPE  177 (336)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGG
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcCCHH
Confidence                49999999999999999999999  7799999999999999999999999999864       4567899999999


Q ss_pred             cCC--CC-ch----------hhhhhhCCCCCCcc
Q psy238          155 YGR--PI-SG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       155 ~~~--~~-~~----------~~ei~tg~~p~~~~  175 (218)
                      +..  .+ +.          +|+|++|..||.+.
T Consensus       178 ~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  211 (336)
T 3h4j_B          178 VINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDE  211 (336)
T ss_dssp             GSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCS
T ss_pred             HHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCc
Confidence            733  22 12          69999999999754

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.97  E-value=4.4e-30  Score=210.62  Aligned_cols=161  Identities=16%  Similarity=0.248  Sum_probs=136.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++....    ......+.+|+.++..++||||+++++++....    .+++||||+++++|.+++..  
T Consensus        66 ~~~~g~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~--  135 (321)
T 2c30_A           66 EKHSGRQVAVKMMDLRK----QQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGE----ELWVLMEFLQGGALTDIVSQ--  135 (321)
T ss_dssp             ETTTCCEEEEEEEETTT----CCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETT----EEEEEECCCCSCBHHHHHTT--
T ss_pred             ECCCCcEEEEEEEeccc----hhHHHHHHHHHHHHHhCCCCCcceEEEEEEECC----EEEEEEecCCCCCHHHHHHh--
Confidence            34689999999997532    223456889999999999999999999998754    58999999999999999864  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....||+.|+||
T Consensus       136 ---~~l~~~~~~~i~~qi~~~L~~LH~--~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  210 (321)
T 2c30_A          136 ---VRLNEEQIATVCEAVLQALAYLHA--QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAP  210 (321)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCH
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCH
Confidence               349999999999999999999999  7799999999999999999999999998764        345789999999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+.  ..++.          +++|++|..||.....
T Consensus       211 E~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~  246 (321)
T 2c30_A          211 EVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP  246 (321)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             hhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            973  23333          6899999999976544

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.97  E-value=3.9e-30  Score=214.26  Aligned_cols=162  Identities=20%  Similarity=0.270  Sum_probs=128.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++.....     ....+.+|+.+++.++||||+++++++.+..    .+|+||||+++++|.+++....
T Consensus        41 ~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  111 (361)
T 3uc3_A           41 DKLTKELVAVKYIERGAA-----IDENVQREIINHRSLRHPNIVRFKEVILTPT----HLAIIMEYASGGELYERICNAG  111 (361)
T ss_dssp             ETTTCCEEEEEEEESSTT-----SCHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHHHS
T ss_pred             ECCCCcEEEEEEEecCcc-----ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCC----EEEEEEEeCCCCCHHHHHHhcC
Confidence            456899999999974321     2245789999999999999999999997644    6999999999999999997653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc--EEEeecCcccc-------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL--VKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~--~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                          .+++..++.++.|++.||.|||+  +||+||||+|+|||++.++.  ++|+|||++..       ....||+.|+|
T Consensus       112 ----~~~~~~~~~i~~ql~~~L~~LH~--~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a  185 (361)
T 3uc3_A          112 ----RFSEDEARFFFQQLLSGVSYCHS--MQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIA  185 (361)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTCCSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCC
Confidence                49999999999999999999999  77999999999999987765  99999998864       45678999999


Q ss_pred             ccc--CCCCch-----------hhhhhhCCCCCCcchhh
Q psy238          153 QTY--GRPISG-----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~--~~~~~~-----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+  +..++.           +|+|++|+.||......
T Consensus       186 PE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~  224 (361)
T 3uc3_A          186 PEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEP  224 (361)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----C
T ss_pred             hhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccH
Confidence            997  333322           69999999999865543

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.97  E-value=4e-30  Score=210.79  Aligned_cols=161  Identities=15%  Similarity=0.128  Sum_probs=134.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .|..||||++...     .........|+.++..++||||+++++++.........+++||||+++++|.+++...    
T Consensus        46 ~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~----  116 (322)
T 3soc_A           46 LNEYVAVKIFPIQ-----DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN----  116 (322)
T ss_dssp             TTEEEEEEEECGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC----
T ss_pred             CCCEEEEEEeecC-----chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHhc----
Confidence            4788999999743     2333455668999999999999999999987655455789999999999999999763    


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCC----------CcccCCCCCCcEEEecCCcEEEeecCcccc----------ccC
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSP----------PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IEN  144 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~----------~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~  144 (218)
                       .+++..++.++.|++.||.|||+  .          +|+||||+|+|||++.++.++|+|||++..          ...
T Consensus       117 -~~~~~~~~~i~~qi~~al~~LH~--~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~  193 (322)
T 3soc_A          117 -VVSWNELCHIAETMARGLAYLHE--DIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQ  193 (322)
T ss_dssp             -CBCHHHHHHHHHHHHHHHHHHTC--CEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTC
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHh--hccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccC
Confidence             38999999999999999999999  6          799999999999999999999999999854          235


Q ss_pred             CCcccccccccCCC-------Cch----------hhhhhhCCCCCCcchh
Q psy238          145 KKYLSATRQTYGRP-------ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       145 ~~t~~y~aPE~~~~-------~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      .||+.|+|||+...       ++.          +|+|++|..||.+...
T Consensus       194 ~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~  243 (322)
T 3soc_A          194 VGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVD  243 (322)
T ss_dssp             CCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCC
T ss_pred             ccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcc
Confidence            78999999997332       111          6999999999976543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.97  E-value=4.4e-30  Score=209.64  Aligned_cols=166  Identities=19%  Similarity=0.241  Sum_probs=133.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||++...  .........+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++..... .
T Consensus        59 ~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~-~  131 (309)
T 3p86_A           59 HGSDVAVKILMEQ--DFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP----NLSIVTEYLSRGSLYRLLHKSGA-R  131 (309)
T ss_dssp             TTEEEEEEEECCC--CCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT----CCEEEEECCTTCBHHHHHHSTTH-H
T ss_pred             CCCcEEEEEecCC--CCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC----ceEEEEecCCCCcHHHHHhhcCC-C
Confidence            6889999999754  223455678899999999999999999999997654    48999999999999999986431 1


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCC--cccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPP--IIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQT  154 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~--iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE  154 (218)
                      ..+++..++.++.|++.||.|||+  .+  |+||||+|+|||++.++.++|+|||++..        ....||+.|+|||
T Consensus       132 ~~~~~~~~~~i~~qi~~aL~~LH~--~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE  209 (309)
T 3p86_A          132 EQLDERRRLSMAYDVAKGMNYLHN--RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPE  209 (309)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHT--SSSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTTSCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHc--CCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChh
Confidence            238999999999999999999999  88  99999999999999999999999998864        3467899999999


Q ss_pred             c--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          155 Y--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +  +..++.          +|++++|..||......+
T Consensus       210 ~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~  246 (309)
T 3p86_A          210 VLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ  246 (309)
T ss_dssp             HHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHH
T ss_pred             hhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            7  333332          699999999998765443

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.97  E-value=3e-30  Score=214.88  Aligned_cols=160  Identities=14%  Similarity=0.117  Sum_probs=130.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC---CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE---HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~---hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|..||||++...       ....+..|+.++..++   |+||+.+++++...+    ..|+||||+++++|.+++.
T Consensus        91 ~~~~~~~vavK~~~~~-------~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~  159 (365)
T 3e7e_A           91 DAKNKQKFVLKVQKPA-------NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN----GSVLVGELYSYGTLLNAIN  159 (365)
T ss_dssp             ---CCCCEEEEEESSC-------CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS----CEEEEECCCCSCBHHHHHH
T ss_pred             ccccCcEEEEEEeCCC-------ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC----CcEEEEeccCCCcHHHHHH
Confidence            4568899999999742       1234566666666665   999999999987754    4899999999999999998


Q ss_pred             hhcc-cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-----------CCcEEEeecCcccc-----
Q psy238           79 RTKR-NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-----------NGLVKIGCDTYTHT-----  141 (218)
Q Consensus        79 ~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-----------~~~~ki~dfg~~~~-----  141 (218)
                      .... ....+++..++.++.||+.||.|||+  .+|+||||||+|||++.           ++.++|+|||++..     
T Consensus       160 ~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~--~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~  237 (365)
T 3e7e_A          160 LYKNTPEKVMPQGLVISFAMRMLYMIEQVHD--CEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFP  237 (365)
T ss_dssp             HHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT--TTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSC
T ss_pred             HhhcccccCCCHHHHHHHHHHHHHHHHHHhh--CCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccC
Confidence            6532 23459999999999999999999999  77999999999999998           89999999999842     


Q ss_pred             -----ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCc
Q psy238          142 -----IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       142 -----~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~  174 (218)
                           ....||+.|+|||+  +..++.          +|+|++|+.||..
T Consensus       238 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  287 (365)
T 3e7e_A          238 KGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVK  287 (365)
T ss_dssp             TTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             CCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCcccc
Confidence                 45679999999997  333343          7999999999853

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.97  E-value=2.2e-30  Score=212.69  Aligned_cols=164  Identities=16%  Similarity=0.185  Sum_probs=135.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++.....   ......+.+|+.++..++||||+++++++.+..    ..|+||||+++++|.+++... 
T Consensus        28 ~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   99 (323)
T 3tki_A           28 NRVTEEAVAVKIVDMKRA---VDCPENIKKEICINKMLNHENVVKFYGHRREGN----IQYLFLEYCSGGELFDRIEPD-   99 (323)
T ss_dssp             ETTTCCEEEEEEEECC----------CHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEEECCTTEEGGGGSBTT-
T ss_pred             ECCCCcEEEEEEEEcccc---cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCC----eEEEEEEcCCCCcHHHHHhhc-
Confidence            456899999999975321   233467889999999999999999999997644    689999999999999998754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....||+.|+
T Consensus       100 ---~~~~~~~~~~i~~qi~~aL~~LH~--~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~  174 (323)
T 3tki_A          100 ---IGMPEPDAQRFFHQLMAGVVYLHG--IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYV  174 (323)
T ss_dssp             ---TBCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGS
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCcc
Confidence               349999999999999999999999  7799999999999999999999999999863          3567899999


Q ss_pred             cccc--CCCC-ch----------hhhhhhCCCCCCcchhh
Q psy238          152 RQTY--GRPI-SG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       152 aPE~--~~~~-~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |||+  +..+ +.          +++|++|..||......
T Consensus       175 aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~  214 (323)
T 3tki_A          175 APELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS  214 (323)
T ss_dssp             CHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTT
T ss_pred             CcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchH
Confidence            9997  3332 22          69999999999876554

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.97  E-value=6.5e-30  Score=219.57  Aligned_cols=168  Identities=17%  Similarity=0.145  Sum_probs=135.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC--CCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH--NDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~--~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|+.||||++...  .........+.+|+.+|+.++||||+++++++....  .....+|+||||++ ++|.+.+..
T Consensus        83 ~~~~~~~vAiK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~-~~l~~~~~~  159 (464)
T 3ttj_A           83 DAVLDRNVAIKKLSRP--FQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMD-ANLCQVIQM  159 (464)
T ss_dssp             ETTTTEEEEEEEEESG--GGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCS-EEHHHHHTS
T ss_pred             ECCCCCEEEEEEECcc--ccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCC-CCHHHHHhh
Confidence            5678999999999743  223556678899999999999999999999987643  23357899999996 577777742


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                            .+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..       ....||++|+|
T Consensus       160 ------~l~~~~~~~~~~qil~aL~~lH~--~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a  231 (464)
T 3ttj_A          160 ------ELDHERMSYLLYQMLCGIKHLHS--AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRA  231 (464)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTSCEEECCCCCC-----CCCC----CCCTTCC
T ss_pred             ------cCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcccccccC
Confidence                  38999999999999999999999  7799999999999999999999999999865       44678999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ||+  +..++.          +++|++|+.||.+....+.
T Consensus       232 PE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~  271 (464)
T 3ttj_A          232 PEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQ  271 (464)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            997  333333          7999999999988765443

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.97  E-value=7.2e-30  Score=208.74  Aligned_cols=168  Identities=17%  Similarity=0.149  Sum_probs=138.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++.....   ......+.+|+.++..++||||+++++++....  ...+|+||||+++++|.+++....
T Consensus        30 ~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~  104 (319)
T 4euu_A           30 HKKTGDLFAIKVFNNISF---LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT--TRHKVLIMEFCPCGSLYTVLEEPS  104 (319)
T ss_dssp             ETTTCCEEEEEEECGGGG---GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT--TCCEEEEEECCTTCBHHHHHHSGG
T ss_pred             ECCCCcEEEEEEeccccc---cchHHHHHHHHHHHHhcCCCCcceEEEEeecCC--CceEEEEEeCCCCCCHHHHHHHhc
Confidence            456799999999975322   223456789999999999999999999987643  346899999999999999998764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE----ecCCcEEEeecCcccc-------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI----QHNGLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl----~~~~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                      . ...+++..++.++.||+.||.|||+  .+|+||||+|+|||+    +.++.++|+|||++..       ....||+.|
T Consensus       105 ~-~~~~~~~~~~~i~~qi~~~L~~LH~--~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y  181 (319)
T 4euu_A          105 N-AYGLPESEFLIVLRDVVGGMNHLRE--NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEY  181 (319)
T ss_dssp             G-TTCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGG
T ss_pred             c-ccCCCHHHHHHHHHHHHHHHHHHHH--CCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCc
Confidence            3 2349999999999999999999999  779999999999999    6778899999999865       345689999


Q ss_pred             cccccC----------CCCch----------hhhhhhCCCCCCcchh
Q psy238          151 TRQTYG----------RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~----------~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +|||+.          ..++.          +++|++|..||.....
T Consensus       182 ~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  228 (319)
T 4euu_A          182 LHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEG  228 (319)
T ss_dssp             CCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTC
T ss_pred             cCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence            999962          23332          6999999999975443

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.97  E-value=6.9e-30  Score=209.86  Aligned_cols=159  Identities=17%  Similarity=0.234  Sum_probs=119.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++..       .....+.+|+.++..+. ||||+++++++.+..    .+|+||||+++++|.+++...
T Consensus        32 ~~~~~~~vavK~~~~-------~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~  100 (325)
T 3kn6_A           32 HKKSNQAFAVKIISK-------RMEANTQKEITALKLCEGHPNIVKLHEVFHDQL----HTFLVMELLNGGELFERIKKK  100 (325)
T ss_dssp             ETTTCCEEEEEEEEG-------GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHHC
T ss_pred             ECCCCCEEEEEEECh-------hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCC----EEEEEEEccCCCcHHHHHHhc
Confidence            456899999999973       23356778999999996 999999999997643    689999999999999999865


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC---cEEEeecCcccc--------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG---LVKIGCDTYTHT--------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~---~~ki~dfg~~~~--------~~~~~t~~  149 (218)
                          ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++   .++|+|||++..        ....+|+.
T Consensus       101 ----~~~~~~~~~~i~~qi~~~l~~LH~--~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~  174 (325)
T 3kn6_A          101 ----KHFSETEASYIMRKLVSAVSHMHD--VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLH  174 (325)
T ss_dssp             ----SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------------
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcC
Confidence                359999999999999999999999  7799999999999998765   899999999864        34567999


Q ss_pred             ccccccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          150 ATRQTYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       150 y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+|||+.  ..++.          +++|++|..||.....
T Consensus       175 y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  214 (325)
T 3kn6_A          175 YAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDR  214 (325)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHHHHSSCTTC----
T ss_pred             ccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCcc
Confidence            9999973  33333          6899999999976543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.97  E-value=5.7e-30  Score=206.97  Aligned_cols=165  Identities=22%  Similarity=0.321  Sum_probs=137.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..    ........+.+|+.++..++||||+++++++...+  ...+++||||+++++|.+++....
T Consensus        35 ~~~~~~~vavK~~~~----~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~  108 (295)
T 3ugc_A           35 QDNTGEVVAVKKLQH----STEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG--RRNLKLIMEYLPYGSLRDYLQKHK  108 (295)
T ss_dssp             CSSCCEEEEEEEESC----CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHH--HTSCEEEEECCTTCBHHHHHHHCG
T ss_pred             cCCCCcEEEEEEccc----CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--CCceEEEEEeCCCCCHHHHHHhcc
Confidence            567899999999973    23455678899999999999999999999986532  235899999999999999998754


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y  150 (218)
                         ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..           ....++..|
T Consensus       109 ---~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  183 (295)
T 3ugc_A          109 ---ERIDHIKLLQYTSQICKGMEYLGT--KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFW  183 (295)
T ss_dssp             ---GGCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGG
T ss_pred             ---cccCHHHHHHHHHHHHHHHHHHhc--CCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccce
Confidence               348999999999999999999999  7799999999999999999999999999864           234567779


Q ss_pred             ccccc--CCCCch----------hhhhhhCCCCCCcchh
Q psy238          151 TRQTY--GRPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +|||+  +..++.          ++++++|..|+.....
T Consensus       184 ~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~  222 (295)
T 3ugc_A          184 YAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA  222 (295)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH
T ss_pred             eCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChH
Confidence            99997  333333          6999999999876543

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=9.2e-30  Score=213.64  Aligned_cols=167  Identities=16%  Similarity=0.163  Sum_probs=137.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++...  .........+.+|+.++..+. ||||+++++++...+  ...+|+||||++ ++|..++...
T Consensus        30 ~~~~~~~vaiK~i~~~--~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~--~~~~~lv~e~~~-~~L~~~~~~~  104 (388)
T 3oz6_A           30 DRRTGEVVAVKKIFDA--FQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADN--DRDVYLVFDYME-TDLHAVIRAN  104 (388)
T ss_dssp             ETTTCCEEEEEEECC----CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTT--SSCEEEEEECCS-EEHHHHHHHT
T ss_pred             ECCCCCEEEEEEeccc--ccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCC--CCEEEEEecccC-cCHHHHHHcC
Confidence            5678999999998632  233556678889999999996 999999999987633  346899999996 6999999753


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------------------  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------------------  141 (218)
                           .++...+..++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..                   
T Consensus       105 -----~~~~~~~~~i~~qi~~~L~~LH~--~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~  177 (388)
T 3oz6_A          105 -----ILEPVHKQYVVYQLIKVIKYLHS--GGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENT  177 (388)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHh--CCEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccc
Confidence                 48999999999999999999999  7799999999999999999999999999863                   


Q ss_pred             ----------ccCCCcccccccccC---CCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          142 ----------IENKKYLSATRQTYG---RPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       142 ----------~~~~~t~~y~aPE~~---~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                                ....||++|+|||+.   ..++.          +++|++|..||.+......
T Consensus       178 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~  239 (388)
T 3oz6_A          178 ENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQ  239 (388)
T ss_dssp             ------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             cccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                      224789999999973   23333          6999999999987765443

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.97  E-value=3.8e-30  Score=221.46  Aligned_cols=165  Identities=18%  Similarity=0.259  Sum_probs=138.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....... ......+.+|+.+++.++||||+++++++....    .+|+||||+++++|.+++... 
T Consensus        37 ~~~~g~~vAvK~i~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~-  110 (476)
T 2y94_A           37 HELTGHKVAVKILNRQKIRS-LDVVGKIRREIQNLKLFRHPHIIKLYQVISTPS----DIFMVMEYVSGGELFDYICKN-  110 (476)
T ss_dssp             ETTTCCEEEEEEEEHHHHHH-TTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEEECCSSEEHHHHTTSS-
T ss_pred             ECCCCCEEEEEEEEhhhccC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----EEEEEEeCCCCCcHHHHHHhc-
Confidence            45689999999997432111 123457889999999999999999999997754    699999999999999999754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....||+.|+|||
T Consensus       111 ---~~l~~~~~~~i~~qi~~aL~~LH~--~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE  185 (476)
T 2y94_A          111 ---GRLDEKESRRLFQQILSGVDYCHR--HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPE  185 (476)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHHHHT--TTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCCCcccccHHHEEEecCCCeEEEeccchhhccccccccccCCCcCeEChh
Confidence               459999999999999999999999  7799999999999999999999999999865       3567899999999


Q ss_pred             cC--CCCc-h----------hhhhhhCCCCCCcchh
Q psy238          155 YG--RPIS-G----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~--~~~~-~----------~~ei~tg~~p~~~~~~  177 (218)
                      +.  ..+. .          +|+|++|..||.+...
T Consensus       186 ~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~  221 (476)
T 2y94_A          186 VISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV  221 (476)
T ss_dssp             HHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS
T ss_pred             hccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH
Confidence            72  2221 1          6999999999986544

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=208.40  Aligned_cols=163  Identities=18%  Similarity=0.261  Sum_probs=134.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .+..||||++...   ........+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++....   
T Consensus        76 ~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~---  145 (325)
T 3kul_A           76 RDVPVAIKALKAG---YTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGR----LAMIVTEYMENGSLDTFLRTHD---  145 (325)
T ss_dssp             CCEEEEEEEECTT---CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGG----CCEEEEECCTTCBHHHHHHTTT---
T ss_pred             CCceEEEEecCCC---CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC----ccEEEeeCCCCCcHHHHHHhcc---
Confidence            4556999999742   23456678999999999999999999999997644    5899999999999999997643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSATRQ  153 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~aP  153 (218)
                      ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..           ....+|+.|+||
T Consensus       146 ~~~~~~~~~~i~~qi~~~L~~LH~--~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aP  223 (325)
T 3kul_A          146 GQFTIMQLVGMLRGVGAGMRYLSD--LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAP  223 (325)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH--CCeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCH
Confidence            359999999999999999999999  7799999999999999999999999999864           223456789999


Q ss_pred             ccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          154 TYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      |+.  ..++.          ++++++ |..||......+
T Consensus       224 E~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~  262 (325)
T 3kul_A          224 EAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD  262 (325)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH
T ss_pred             hHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH
Confidence            972  23322          688998 999997765544

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.97  E-value=1.2e-29  Score=213.33  Aligned_cols=164  Identities=15%  Similarity=0.230  Sum_probs=137.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++...    .......+.+|+.+|..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        72 ~~~~~~~~a~K~~~~~----~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~----~~~lv~E~~~gg~L~~~l~~~~  143 (387)
T 1kob_A           72 EKATGRVFVAKFINTP----YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY----EMVLILEFLSGGELFDRIAAED  143 (387)
T ss_dssp             ETTTCCEEEEEEEECC----SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS----EEEEEEECCCCCBHHHHTTCTT
T ss_pred             ECCCCCEEEEEEeccc----chhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCC----EEEEEEEcCCCCcHHHHHHhhc
Confidence            4578999999999742    2344567889999999999999999999997643    6999999999999999987542


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec--CCcEEEeecCcccc-------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH--NGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~--~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.  ++.++|+|||++..       ....||+.|+|
T Consensus       144 ---~~l~~~~~~~i~~qi~~aL~~LH~--~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~a  218 (387)
T 1kob_A          144 ---YKMSEAEVINYMRQACEGLKHMHE--HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAA  218 (387)
T ss_dssp             ---CCBCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccC
Confidence               358999999999999999999999  77999999999999974  47899999999875       23578999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+.  ..++.          +|+|++|..||.+....
T Consensus       219 PE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~  256 (387)
T 1kob_A          219 PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL  256 (387)
T ss_dssp             HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH
T ss_pred             chhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHH
Confidence            9973  23333          79999999999876543

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.97  E-value=1.1e-29  Score=207.67  Aligned_cols=169  Identities=20%  Similarity=0.289  Sum_probs=139.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++.....   ......+.+|+.++..++||||+++++++.+..    .+|+||||++ ++|.+++....
T Consensus        26 ~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~-~~L~~~l~~~~   97 (317)
T 2pmi_A           26 NKTTGVYVALKEVKLDSE---EGTPSTAIREISLMKELKHENIVRLYDVIHTEN----KLTLVFEFMD-NDLKKYMDSRT   97 (317)
T ss_dssp             CSSSCCEEEEEEEECCST---TCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTT----EEEEEEECCC-CBHHHHHHHHH
T ss_pred             ECCCCcEEEEEEeecccc---cccHHHHHHHHHHHHhcCCCCcceEEEEEEECC----eEEEEEEecC-CCHHHHHHhcc
Confidence            567899999999975421   223356788999999999999999999987643    6999999997 69999998754


Q ss_pred             cc--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccc
Q psy238           82 RN--VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSAT  151 (218)
Q Consensus        82 ~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~  151 (218)
                      ..  ...+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+|+.|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~qi~~aL~~lH~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~  175 (317)
T 2pmi_A           98 VGNTPRGLELNLVKYFQWQLLQGLAFCHE--NKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYR  175 (317)
T ss_dssp             SSSCCCCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTC
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHHHH--CCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCccccccc
Confidence            21  2348999999999999999999999  7799999999999999999999999999864        3457899999


Q ss_pred             ccccCC---CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          152 RQTYGR---PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       152 aPE~~~---~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |||+..   .++.          +|+|++|..||.+....+.
T Consensus       176 aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~  217 (317)
T 2pmi_A          176 APDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQ  217 (317)
T ss_dssp             CHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             CchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH
Confidence            999732   2333          6999999999987665443

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.97  E-value=6.2e-30  Score=228.58  Aligned_cols=167  Identities=14%  Similarity=0.164  Sum_probs=139.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|+.||||++...... .......+..|..+|..+ +||+|+.+++++.+..    .+|+||||++|++|..++...
T Consensus       362 ~~~~~~~vAvK~l~~~~~~-~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~----~~~lV~E~~~gg~L~~~l~~~  436 (674)
T 3pfq_A          362 RKGTDELYAVKILKKDVVI-QDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD----RLYFVMEYVNGGDLMYHIQQV  436 (674)
T ss_dssp             ESSSCCEEEEEEEEHHHHH-HTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSS----EEEEEEECCCSCBHHHHHHHH
T ss_pred             ECCCCcEEEEEEEeccccc-cHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCC----EEEEEEeCcCCCcHHHHHHhc
Confidence            3568899999999742111 122345678899999888 7999999999987644    699999999999999999876


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..        ....||+.|+|
T Consensus       437 ~----~~~~~~~~~~~~qi~~aL~~LH~--~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~A  510 (674)
T 3pfq_A          437 G----RFKEPHAVFYAAEIAIGLFFLQS--KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIA  510 (674)
T ss_dssp             S----SCCHHHHHHHHHHHHHHHHHHHH--TSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCC
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHh--CCeEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccC
Confidence            3    49999999999999999999999  7799999999999999999999999998864        45679999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+  +..++.          +|+|++|..||.+....+
T Consensus       511 PE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~  549 (674)
T 3pfq_A          511 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE  549 (674)
T ss_dssp             HHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             HhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHH
Confidence            997  333333          799999999998765543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.97  E-value=1.9e-29  Score=203.21  Aligned_cols=169  Identities=21%  Similarity=0.274  Sum_probs=138.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++.....   ......+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        43 ~~~~~~~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  115 (285)
T 3is5_A           43 ERSSGLERVIKTINKDRS---QVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYH----NMYIVMETCEGGELLERIVSAQ  115 (285)
T ss_dssp             ETTTCCEEEEEEEEGGGC---CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEECCCSCCBHHHHHHHHH
T ss_pred             EccCCceEEEEEeecccc---chhHHHHHHHHHHHHhCCCchHHhHHHheecCC----eEEEEEEeCCCCcHHHHHHhhh
Confidence            456789999999985422   223467889999999999999999999997643    6899999999999999997764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE---ecCCcEEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI---QHNGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl---~~~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                      .....+++..++.++.|++.||.|||+  .+|+||||+|+|||+   +.++.++|+|||++..       ....+|+.|+
T Consensus       116 ~~~~~~~~~~~~~i~~qi~~~L~~LH~--~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~  193 (285)
T 3is5_A          116 ARGKALSEGYVAELMKQMMNALAYFHS--QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYM  193 (285)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGC
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHHHHh--CCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcC
Confidence            444669999999999999999999999  779999999999999   4568899999999864       4567899999


Q ss_pred             ccccC-CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTYG-RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~~-~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+. ..++.          +++|++|..||.+...++
T Consensus       194 aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~  232 (285)
T 3is5_A          194 APEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE  232 (285)
T ss_dssp             CHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             ChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCHHH
Confidence            99973 23333          699999999998765544

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=5.7e-30  Score=216.05  Aligned_cols=162  Identities=12%  Similarity=0.124  Sum_probs=128.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhh-cCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLT-QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~-~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++...         ..+.+|+.++. ..+||||++++++|.....+...+|+||||++|++|.+++...
T Consensus        83 ~~~~~~~vAiK~~~~~---------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~  153 (400)
T 1nxk_A           83 NKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDR  153 (400)
T ss_dssp             ETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC
T ss_pred             ECCCCCEEEEEEeCcc---------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHh
Confidence            4678999999999621         23567777764 4589999999999876433445789999999999999999865


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---CCcEEEeecCcccc-------ccCCCcccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---NGLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                      ..  ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.   ++.++|+|||++..       ....||+.|
T Consensus       154 ~~--~~l~~~~~~~i~~qi~~aL~~LH~--~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y  229 (400)
T 1nxk_A          154 GD--QAFTEREASEIMKSIGEAIQYLHS--INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYY  229 (400)
T ss_dssp             -----CCBHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTT
T ss_pred             CC--CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCc
Confidence            32  459999999999999999999999  77999999999999987   78999999999865       456789999


Q ss_pred             cccccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          151 TRQTYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       151 ~aPE~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +|||+..  .++.          +|+|++|..||....
T Consensus       230 ~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  267 (400)
T 1nxk_A          230 VAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH  267 (400)
T ss_dssp             CCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCT
T ss_pred             cCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence            9999832  3332          799999999997654

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=1.1e-29  Score=217.43  Aligned_cols=165  Identities=15%  Similarity=0.116  Sum_probs=130.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++...  .........+.+|+.+|..++||||+++++++.... .....+|+||||+ +++|.+++...
T Consensus        74 ~~~~~~~vaiK~i~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~  150 (458)
T 3rp9_A           74 DKLEKRVVAIKKILRV--FEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIA-DSDFKKLFRTP  150 (458)
T ss_dssp             ECC--CEEEEEEECST--TSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCC-SEEHHHHHHSS
T ss_pred             ECCCCcEEEEEEechh--hcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEecc-ccchhhhcccC
Confidence            4678999999998642  233556678999999999999999999999986543 2335799999998 57999999754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------------------  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------------------  141 (218)
                          ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..                   
T Consensus       151 ----~~l~~~~~~~~~~qi~~aL~~LH~--~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~  224 (458)
T 3rp9_A          151 ----VYLTELHIKTLLYNLLVGVKYVHS--AGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDD  224 (458)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC-------
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHh--CCcCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccc
Confidence                359999999999999999999999  7799999999999999999999999999864                   


Q ss_pred             ----------------ccCCCccccccccc---CCCCch----------hhhhhh-----------CCCCCCcc
Q psy238          142 ----------------IENKKYLSATRQTY---GRPISG----------QYEIVT-----------KTNNVTEK  175 (218)
Q Consensus       142 ----------------~~~~~t~~y~aPE~---~~~~~~----------~~ei~t-----------g~~p~~~~  175 (218)
                                      ....||++|+|||+   +..++.          +|+|++           |+.+|.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~  298 (458)
T 3rp9_A          225 MNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGS  298 (458)
T ss_dssp             --------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--
T ss_pred             cccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCC
Confidence                            22466999999995   223333          688998           66666554

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.97  E-value=6.2e-30  Score=212.01  Aligned_cols=169  Identities=17%  Similarity=0.213  Sum_probs=138.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...   ........+.+|+.++..+ +||||+++++++.+.+   ..+++||||+++++|.+++...
T Consensus        48 ~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~---~~~~iv~e~~~~g~L~~~l~~~  121 (359)
T 3vhe_A           48 KTATCRTVAVKMLKEG---ATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG---GPLMVIVEFCKFGNLSTYLRSK  121 (359)
T ss_dssp             STTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT---SCCEEEEECCTTEEHHHHHHTT
T ss_pred             ccccceEEEEEEecCc---CCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCC---CceEEEEEecCCCcHHHHHHhc
Confidence            4567889999999742   2345567889999999999 7899999999987643   3589999999999999999875


Q ss_pred             ccc--------------------------------------------------------------CCCCCHHHHHHHHHH
Q psy238           81 KRN--------------------------------------------------------------VKKLPLSAWKRWCSQ   98 (218)
Q Consensus        81 ~~~--------------------------------------------------------------~~~~~~~~~~~~~~q   98 (218)
                      ...                                                              ...+++..++.++.|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q  201 (359)
T 3vhe_A          122 RNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQ  201 (359)
T ss_dssp             TTSBCSCC------------------------------------------------------CTTTTCBCHHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHH
Confidence            421                                                              112889999999999


Q ss_pred             HHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc--CCCCch-----
Q psy238           99 ILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY--GRPISG-----  161 (218)
Q Consensus        99 i~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~--~~~~~~-----  161 (218)
                      |+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....+|+.|+|||+  +..++.     
T Consensus       202 l~~aL~~LH~--~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~  279 (359)
T 3vhe_A          202 VAKGMEFLAS--RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVW  279 (359)
T ss_dssp             HHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHHHHH--CCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhh
Confidence            9999999999  7799999999999999999999999999864          34566788999996  333333     


Q ss_pred             -----hhhhhh-CCCCCCcchhh
Q psy238          162 -----QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       162 -----~~ei~t-g~~p~~~~~~e  178 (218)
                           +|+|++ |..||.+....
T Consensus       280 slG~il~ellt~g~~p~~~~~~~  302 (359)
T 3vhe_A          280 SFGVLLWEIFSLGASPYPGVKID  302 (359)
T ss_dssp             HHHHHHHHHTTTSCCSSTTCCCS
T ss_pred             hHHHHHHHHHhcCCCCCCccchh
Confidence                 688998 99999776543

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=3.2e-29  Score=207.82  Aligned_cols=165  Identities=21%  Similarity=0.271  Sum_probs=138.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+.+|+.+++.++||||+++++++....    .+++||||+. |+|.+++....
T Consensus        75 ~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----~~~lv~e~~~-g~l~~~l~~~~  148 (348)
T 1u5q_A           75 DVRNSEVVAIKKMSYSGK-QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH----TAWLVMEYCL-GSASDLLEVHK  148 (348)
T ss_dssp             ETTTTEEEEEEEEESCSS-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCS-EEHHHHHHHHT
T ss_pred             EccCCeEEEEEEEccccc-cchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC----eEEEEEecCC-CCHHHHHHHhc
Confidence            457899999999975422 22445577899999999999999999999997754    6899999996 68988887543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccC-
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYG-  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~-  156 (218)
                         .++++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..    ....||+.|+|||+. 
T Consensus       149 ---~~l~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~gt~~y~aPE~~~  223 (348)
T 1u5q_A          149 ---KPLQEVEIAAVTHGALQGLAYLHS--HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVIL  223 (348)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeeeCCCCHHHEEECCCCCEEEeeccCceecCCCCcccCCcceeCHhhhc
Confidence               459999999999999999999999  7799999999999999999999999999865    456889999999963 


Q ss_pred             ----CCCch----------hhhhhhCCCCCCcchh
Q psy238          157 ----RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       157 ----~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                          ..++.          +++|++|..||.....
T Consensus       224 ~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~  258 (348)
T 1u5q_A          224 AMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA  258 (348)
T ss_dssp             TTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             cccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence                23333          6999999999976544

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.97  E-value=2.1e-29  Score=205.51  Aligned_cols=168  Identities=14%  Similarity=0.135  Sum_probs=140.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..    ........+.+|+.++..++||||+++++++.........+++||||+++++|.+++....
T Consensus        50 ~~~~~~~vavK~~~~----~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  125 (317)
T 2buj_A           50 GLHDGHFYALKRILC----HEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLK  125 (317)
T ss_dssp             ETTTCCEEEEEEEEE----SSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHH
T ss_pred             ecCCCcEEEEEEEec----CCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHH
Confidence            457899999999874    2345667889999999999999999999998754333457899999999999999998765


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------------ccC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------------IEN  144 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------------~~~  144 (218)
                      .....+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..                 ...
T Consensus       126 ~~~~~~~~~~~~~i~~qi~~~L~~LH~--~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~  203 (317)
T 2buj_A          126 DKGNFLTEDQILWLLLGICRGLEAIHA--KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQ  203 (317)
T ss_dssp             TTTCCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccc
Confidence            445679999999999999999999999  7799999999999999999999999998654                 123


Q ss_pred             CCcccccccccCCC-----Cch----------hhhhhhCCCCCCcc
Q psy238          145 KKYLSATRQTYGRP-----ISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       145 ~~t~~y~aPE~~~~-----~~~----------~~ei~tg~~p~~~~  175 (218)
                      .||+.|+|||+...     ++.          +++|++|..||...
T Consensus       204 ~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  249 (317)
T 2buj_A          204 RCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMV  249 (317)
T ss_dssp             HSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHH
T ss_pred             cCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhh
Confidence            46899999997431     122          79999999999653

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.97  E-value=2.4e-29  Score=207.18  Aligned_cols=167  Identities=17%  Similarity=0.187  Sum_probs=137.7

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||||++...   ........+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++......
T Consensus        75 ~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~  147 (343)
T 1luf_A           75 EPFTMVAVKMLKEE---ASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK----PMCLLFEYMAYGDLNEFLRSMSPH  147 (343)
T ss_dssp             SSEEEEEEEECCTT---CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHTCC-
T ss_pred             CCceeEEEEEeccc---cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC----ceEEEEecCCCCcHHHHHHHhCcc
Confidence            56689999999742   23456678899999999999999999999997643    589999999999999999874311


Q ss_pred             --------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--
Q psy238           84 --------------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--  141 (218)
Q Consensus        84 --------------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--  141 (218)
                                          ...+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..  
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  225 (343)
T 1luf_A          148 TVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE--RKFVHRDLATRNCLVGENMVVKIADFGLSRNIY  225 (343)
T ss_dssp             ---------------------CCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHT
T ss_pred             cccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCcceEEECCCCeEEEeecCCCcccc
Confidence                                1458999999999999999999999  7799999999999999999999999998754  


Q ss_pred             --------ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          142 --------IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       142 --------~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                              ....+|+.|+|||+  +..++.          +|+|++ |..||.+....+
T Consensus       226 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~  284 (343)
T 1luf_A          226 SADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE  284 (343)
T ss_dssp             GGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH
T ss_pred             cCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHH
Confidence                    24567889999996  333333          689998 999998765543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.4e-29  Score=209.97  Aligned_cols=168  Identities=15%  Similarity=0.174  Sum_probs=140.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||++...  .........+.+|+.+|+.++||||+++++++.....  ....+|+||||+ +++|.+++..
T Consensus        46 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~  122 (367)
T 1cm8_A           46 DGRTGAKVAIKKLYRP--FQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH  122 (367)
T ss_dssp             ETTTCCEEEEEECSST--TSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH
T ss_pred             ECCCCCEEEEEEeCcc--ccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc
Confidence            5678999999998643  2335566788999999999999999999999876432  224579999999 7899999975


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                           ..+++..+..++.||+.||.|||+  .||+||||+|+|||++.++.++|+|||++..     ....+|.+|+|||
T Consensus       123 -----~~l~~~~~~~~~~qi~~~L~~LH~--~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE  195 (367)
T 1cm8_A          123 -----EKLGEDRIQFLVYQMLKGLRYIHA--AGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPE  195 (367)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTH
T ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCcCHHHEEEcCCCCEEEEeeecccccccccCcCcCCCCcCCHH
Confidence                 248999999999999999999999  7799999999999999999999999999875     4567899999999


Q ss_pred             c--C-CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          155 Y--G-RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       155 ~--~-~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +  + ..++.          +++|++|+.||.+.....
T Consensus       196 ~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~  233 (367)
T 1cm8_A          196 VILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD  233 (367)
T ss_dssp             HHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             HHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            6  2 23333          699999999998766543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.97  E-value=9.9e-30  Score=205.95  Aligned_cols=167  Identities=15%  Similarity=0.220  Sum_probs=134.1

Q ss_pred             CCCCCcEEEEEEeeccccccc----------------------HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNF----------------------KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKP   59 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~----------------------~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~   59 (218)
                      |..+|..||||++........                      ......+.+|+.++..++||||+++++++.+..  ..
T Consensus        34 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~  111 (298)
T 2zv2_A           34 NENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPN--ED  111 (298)
T ss_dssp             ETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTTBCCEEEEEECSS--SS
T ss_pred             ECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC--CC
Confidence            457899999999975421110                      112356889999999999999999999987633  34


Q ss_pred             eEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcc
Q psy238           60 RVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYT  139 (218)
Q Consensus        60 ~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~  139 (218)
                      .+|+||||+++++|.+++..     .++++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++
T Consensus       112 ~~~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~  184 (298)
T 2zv2_A          112 HLYMVFELVNQGPVMEVPTL-----KPLSEDQARFYFQDLIKGIEYLHY--QKIIHRDIKPSNLLVGEDGHIKIADFGVS  184 (298)
T ss_dssp             EEEEEEECCTTCBSCCSSCS-----SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEEEecCCCCcHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHHHEEECCCCCEEEecCCCc
Confidence            78999999999999876432     459999999999999999999999  77999999999999999999999999988


Q ss_pred             cc--------ccCCCcccccccccCCCC-----ch----------hhhhhhCCCCCCcchh
Q psy238          140 HT--------IENKKYLSATRQTYGRPI-----SG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       140 ~~--------~~~~~t~~y~aPE~~~~~-----~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ..        ....||+.|+|||+....     +.          +|++++|..||.....
T Consensus       185 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~  245 (298)
T 2zv2_A          185 NEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERI  245 (298)
T ss_dssp             EECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             cccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccH
Confidence            64        345789999999974321     11          6999999999976543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.96  E-value=7.9e-29  Score=198.99  Aligned_cols=166  Identities=16%  Similarity=0.195  Sum_probs=138.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....  ........+.+|+.++..++||||+++++++....    ..++||||+++++|.+++....
T Consensus        27 ~~~~~~~vavK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~l~~~~~~~~  100 (284)
T 3kk8_A           27 HKTTGLEFAAKIINTKK--LSARDFQKLEREARICRKLQHPNIVRLHDSIQEES----FHYLVFDLVTGGELFEDIVARE  100 (284)
T ss_dssp             ETTTCCEEEEEEEEGGG--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHHHS
T ss_pred             EcCCCceEEEEEeeccc--CCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCC----EEEEEEecCCCCCHHHHHHhcC
Confidence            45789999999998542  23455677889999999999999999999997643    6899999999999999988753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc---EEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL---VKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~---~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                          .+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.   ++|+|||++..       ....+|+.|+
T Consensus       101 ----~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~  174 (284)
T 3kk8_A          101 ----FYSEADASHCIQQILESIAYCHS--NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYL  174 (284)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCc
Confidence                49999999999999999999999  77999999999999976654   99999999864       3467899999


Q ss_pred             cccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+  +.+++.          ++++++|..||......+
T Consensus       175 aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~  214 (284)
T 3kk8_A          175 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR  214 (284)
T ss_dssp             CHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             CchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH
Confidence            9997  333333          689999999997765443

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.5e-29  Score=211.14  Aligned_cols=168  Identities=16%  Similarity=0.168  Sum_probs=136.1

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||++..   .........+.+|+.++..++||||+++++++.+..    ..++||||+++++|.+++.....
T Consensus        98 ~~~~~~vavK~~~~---~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~~  170 (367)
T 3l9p_A           98 DPSPLQVAVKTLPE---VCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL----PRFILLELMAGGDLKSFLRETRP  170 (367)
T ss_dssp             --CCEEEEEEECCS---SCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTEEHHHHHHHHSC
T ss_pred             CCcceeEEEEeccc---ccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC----CCEEEEEeCCCCCHHHHHHhhcc
Confidence            45778999999863   223455667889999999999999999999997654    47999999999999999987642


Q ss_pred             ---cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC---cEEEeecCcccc----------ccCCC
Q psy238           83 ---NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG---LVKIGCDTYTHT----------IENKK  146 (218)
Q Consensus        83 ---~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~---~~ki~dfg~~~~----------~~~~~  146 (218)
                         ....+++..++.++.||+.||.|||+  .+|+||||||+|||++.++   .++|+|||++..          ....+
T Consensus       171 ~~~~~~~~~~~~~~~i~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~  248 (367)
T 3l9p_A          171 RPSQPSSLAMLDLLHVARDIACGCQYLEE--NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAML  248 (367)
T ss_dssp             CSSSCCCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGS
T ss_pred             ccCccccccHHHHHHHHHHHHHHHHHHHh--CCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCC
Confidence               12348999999999999999999999  7799999999999998554   599999999863          23456


Q ss_pred             ccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          147 YLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       147 t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      |+.|+|||+  +..++.          +++|++ |..||......+
T Consensus       249 t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~  294 (367)
T 3l9p_A          249 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE  294 (367)
T ss_dssp             CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred             cccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence            889999996  333333          689998 999998765544

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.96  E-value=2.8e-29  Score=208.52  Aligned_cols=165  Identities=18%  Similarity=0.224  Sum_probs=139.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++...   ........+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++....
T Consensus        54 ~~~~~~~va~K~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  126 (360)
T 3eqc_A           54 HKPSGLVMARKLIHLE---IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG----EISICMEHMDGGSLDQVLKKAG  126 (360)
T ss_dssp             ETTTCCEEEEEEEECC---CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETT----EEEEEECCCTTCBHHHHHHHHS
T ss_pred             ECCCCcEEEEEEeccc---cCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECC----EEEEEEECCCCCCHHHHHHHcC
Confidence            4568999999999853   23556678999999999999999999999998744    6899999999999999998763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSP-PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~-~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE  154 (218)
                          .+++..+..++.|++.||.|||+  . +|+|+||+|+|||++.++.++|+|||++..      ....||+.|+|||
T Consensus       127 ----~~~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE  200 (360)
T 3eqc_A          127 ----RIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE  200 (360)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--HHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--hCCEEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHH
Confidence                49999999999999999999998  4 699999999999999999999999998864      4568899999999


Q ss_pred             c--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          155 Y--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +  +..++.          +++|++|..||......+
T Consensus       201 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  237 (360)
T 3eqc_A          201 RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE  237 (360)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHH
T ss_pred             HHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            7  333333          699999999998765544

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.96  E-value=5.9e-30  Score=209.64  Aligned_cols=161  Identities=17%  Similarity=0.255  Sum_probs=134.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||||++.....   ......+.+|+.++..++||||+++++++....    ..++||||+++++|.+++......
T Consensus        52 ~~~~~vavK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~  124 (326)
T 3uim_A           52 ADGTLVAVKRLKEERT---QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT----ERLLVYPYMANGSVASCLRERPES  124 (326)
T ss_dssp             SSSCCEEEEECCC--------CCCHHHHHHHGGGTCCCTTBCCCCEEECCSS----CCEEEEECCTTCBHHHHHHCCSTT
T ss_pred             cCCCEEEEEEeccccC---chHHHHHHHHHHHHHhccCCCccceEEEEecCC----ceEEEEEeccCCCHHHHHHhcccc
Confidence            4688999999975321   122236889999999999999999999997654    479999999999999999987655


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCC---CcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSP---PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSAT  151 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~---~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~  151 (218)
                      ..++++..++.++.|++.||.|||+  .   +|+||||+|+|||++.++.++|+|||++..         ....||+.|+
T Consensus       125 ~~~~~~~~~~~i~~~i~~~l~~lH~--~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~  202 (326)
T 3uim_A          125 QPPLDWPKRQRIALGSARGLAYLHD--HCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHI  202 (326)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHH--SSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh--CCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCcc
Confidence            5669999999999999999999999  6   799999999999999999999999999864         3345899999


Q ss_pred             cccc--CCCCch----------hhhhhhCCCCCC
Q psy238          152 RQTY--GRPISG----------QYEIVTKTNNVT  173 (218)
Q Consensus       152 aPE~--~~~~~~----------~~ei~tg~~p~~  173 (218)
                      |||+  +..++.          +++|++|..||.
T Consensus       203 aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  236 (326)
T 3uim_A          203 APEYLSTGKSSEKTDVFGYGVMLLELITGQRAFD  236 (326)
T ss_dssp             CHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBC
T ss_pred             CHHHhccCCCCccccchhHHHHHHHHHhCCCccc
Confidence            9997  222332          699999999996

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.96  E-value=2.2e-29  Score=217.22  Aligned_cols=166  Identities=19%  Similarity=0.243  Sum_probs=137.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++......  ......+.+|+.+|..++||||+++++++.+..    .+|+||||+++++|.+++....
T Consensus        43 ~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~  116 (486)
T 3mwu_A           43 DRITQQEYAVKVINKASAK--NKDTSTILREVELLKKLDHPNIMKLFEILEDSS----SFYIVGELYTGGELFDEIIKRK  116 (486)
T ss_dssp             ETTTCCEEEEEEEEHHHHB--CSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHHHS
T ss_pred             ECCCCCEEEEEEEeccccc--chHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCC----EEEEEEEcCCCCcHHHHHHhcC
Confidence            4568999999999743211  123467889999999999999999999997644    6999999999999999988763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe---cCCcEEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ---HNGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~---~~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                          .+++..++.++.||+.||.|||+  .+|+||||+|+|||++   .++.++|+|||++..       ....||+.|+
T Consensus       117 ----~~~~~~~~~i~~qi~~al~~lH~--~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~  190 (486)
T 3mwu_A          117 ----RFSEHDAARIIKQVFSGITYMHK--HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYI  190 (486)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCC
Confidence                49999999999999999999999  7799999999999995   457899999999864       4567899999


Q ss_pred             ccccCC-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTYGR-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~~~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+.. .++.          +|+|++|..||.+....+
T Consensus       191 aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~  229 (486)
T 3mwu_A          191 APEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYD  229 (486)
T ss_dssp             CGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             CHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            999833 2332          689999999998765543

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.96  E-value=2.6e-29  Score=210.15  Aligned_cols=164  Identities=20%  Similarity=0.298  Sum_probs=129.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||||++...   ........+.+|+.++..++||||+++++++....    .+++||||+++++|.+++....  
T Consensus        71 ~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~--  141 (373)
T 2qol_A           71 KKEISVAIKTLKVG---YTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK----PVMIVTEYMENGSLDSFLRKHD--  141 (373)
T ss_dssp             SCBCCEEEEECCTT---CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHTTT--
T ss_pred             CCceeEEEEEecCc---cCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC----ceEEEEeCCCCCcHHHHHHhCC--
Confidence            46778999999743   23456678999999999999999999999997644    5899999999999999998643  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSATR  152 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~a  152 (218)
                       ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..           ....+++.|+|
T Consensus       142 -~~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~a  218 (373)
T 2qol_A          142 -AQFTVIQLVGMLRGIASGMKYLSD--MGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTS  218 (373)
T ss_dssp             -TCSCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTCCEEECCC----------------------CTTSC
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHH--CCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccC
Confidence             359999999999999999999999  7799999999999999999999999998865           12234678999


Q ss_pred             ccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ||+  +..++.          ++++++ |..||......+
T Consensus       219 PE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~  258 (373)
T 2qol_A          219 PEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD  258 (373)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH
T ss_pred             hhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence            997  333333          688887 999998765443

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.96  E-value=2.4e-29  Score=205.28  Aligned_cols=164  Identities=19%  Similarity=0.232  Sum_probs=134.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||++....  ........+.+|+.+++.++||||+++++++.+..    .+++||||++ ++|.+++....   
T Consensus        44 ~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~---  113 (311)
T 3niz_A           44 QGRIVALKRIRLDA--EDEGIPSTAIREISLLKELHHPNIVSLIDVIHSER----CLTLVFEFME-KDLKKVLDENK---  113 (311)
T ss_dssp             TSCEEEEEEEC--------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSS----CEEEEEECCS-EEHHHHHHTCT---
T ss_pred             CCCEEEEEEEeccc--ccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCC----EEEEEEcCCC-CCHHHHHHhcc---
Confidence            58899999997532  22334567889999999999999999999987644    5899999997 58988887643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccccccC
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQTYG  156 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE~~  156 (218)
                      ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+|+.|+|||+.
T Consensus       114 ~~~~~~~~~~~~~qi~~~l~~LH~--~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~  191 (311)
T 3niz_A          114 TGLQDSQIKIYLYQLLRGVAHCHQ--HRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVL  191 (311)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHh
Confidence            459999999999999999999999  7799999999999999999999999999864        345789999999962


Q ss_pred             ---CCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          157 ---RPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       157 ---~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                         ..++.          +++|++|..||.+....+.
T Consensus       192 ~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~  228 (311)
T 3niz_A          192 MGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQ  228 (311)
T ss_dssp             TTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTH
T ss_pred             cCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHH
Confidence               22333          6999999999987665544

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.96  E-value=2.5e-29  Score=205.69  Aligned_cols=165  Identities=19%  Similarity=0.298  Sum_probs=133.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC-------------------------
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-------------------------   56 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~-------------------------   56 (218)
                      +..+|..||||++....   .....+.+.+|+.+|+.++||||++++++|.+...                         
T Consensus        27 ~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (332)
T 3qd2_B           27 NKVDDCNYAIKRIRLPN---RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPS  103 (332)
T ss_dssp             ETTTCCEEEEEEEECCS---TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC----------------
T ss_pred             EcCCCcEEEEEEeecCC---chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhhccccccccccCCC
Confidence            45689999999997532   23456778999999999999999999999865431                         


Q ss_pred             ----------------------------CCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhc
Q psy238           57 ----------------------------DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHS  108 (218)
Q Consensus        57 ----------------------------~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~  108 (218)
                                                  ....+++||||+++++|.+++..... ....+...++.++.||+.||.|||+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~LH~  182 (332)
T 3qd2_B          104 PMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS-LEDREHGVCLHIFIQIAEAVEFLHS  182 (332)
T ss_dssp             ----------------------------CCCEEEEEEECCCSSCHHHHHHTCCS-GGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC-ccchhhHHHHHHHHHHHHHHHHHHh
Confidence                                        12358999999999999999987543 2346777899999999999999999


Q ss_pred             CCCCcccCCCCCCcEEEecCCcEEEeecCccccc--------------------cCCCccccccccc--CCCCch-----
Q psy238          109 CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI--------------------ENKKYLSATRQTY--GRPISG-----  161 (218)
Q Consensus       109 ~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~--------------------~~~~t~~y~aPE~--~~~~~~-----  161 (218)
                        .+|+||||+|+|||++.++.++|+|||++...                    ...||+.|+|||+  +..++.     
T Consensus       183 --~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~  260 (332)
T 3qd2_B          183 --KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIF  260 (332)
T ss_dssp             --TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHH
T ss_pred             --CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHH
Confidence              77999999999999999999999999998652                    2358999999997  334443     


Q ss_pred             -----hhhhhhCCCCC
Q psy238          162 -----QYEIVTKTNNV  172 (218)
Q Consensus       162 -----~~ei~tg~~p~  172 (218)
                           +++|++|..|+
T Consensus       261 slG~il~el~~~~~~~  276 (332)
T 3qd2_B          261 SLGLILFELLYSFSTQ  276 (332)
T ss_dssp             HHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHcCCCh
Confidence                 68889887665

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.96  E-value=3.4e-29  Score=203.73  Aligned_cols=167  Identities=17%  Similarity=0.209  Sum_probs=136.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...  .........+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++... 
T Consensus        24 ~~~~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~-   96 (311)
T 4agu_A           24 NRDTGQIVAIKKFLES--EDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKR----RLHLVFEYCDHTVLHELDRYQ-   96 (311)
T ss_dssp             ETTTCCEEEEEEECCC--CC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCSEEHHHHHHHTS-
T ss_pred             eCCCCcEEEEEEeecc--ccchHHHHHHHHHHHHHHhCCCCCccchhheeecCC----eEEEEEEeCCCchHHHHHhhh-
Confidence            4567999999998754  333455677889999999999999999999997654    689999999988898887754 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+|..|+||
T Consensus        97 ---~~~~~~~~~~i~~~l~~~l~~lH~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  171 (311)
T 4agu_A           97 ---RGVPEHLVKSITWQTLQAVNFCHK--HNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSP  171 (311)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGCCH
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHH--CCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccCh
Confidence               349999999999999999999999  7799999999999999999999999999864        345789999999


Q ss_pred             cc--C-CCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          154 TY--G-RPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       154 E~--~-~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+  + ..++.          ++++++|..||.+....+.
T Consensus       172 E~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~  211 (311)
T 4agu_A          172 ELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQ  211 (311)
T ss_dssp             HHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             HHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            96  2 23333          6999999999987765544

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.96  E-value=2.5e-29  Score=204.56  Aligned_cols=168  Identities=18%  Similarity=0.274  Sum_probs=138.0

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      .+|..||||++...   ........+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++..... 
T Consensus        51 ~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~  123 (314)
T 2ivs_A           51 AGYTTVAVKMLKEN---ASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG----PLLLIVEYAKYGSLRGFLRESRKV  123 (314)
T ss_dssp             SSEEEEEEEECCTT---CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHTTTS
T ss_pred             cCcceEEEEeccCC---CCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC----ceEEEEeecCCCCHHHHHHHHhhc
Confidence            45688999999742   23556678899999999999999999999987654    58999999999999999987532 


Q ss_pred             -------------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--
Q psy238           83 -------------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--  141 (218)
Q Consensus        83 -------------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--  141 (218)
                                         ....+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..  
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~  201 (314)
T 2ivs_A          124 GPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE--MKLVHRDLAARNILVAEGRKMKISDFGLSRDVY  201 (314)
T ss_dssp             TTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEEETTTEEEECCCTTCEECT
T ss_pred             cCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH--CCCcccccchheEEEcCCCCEEEcccccccccc
Confidence                               11238899999999999999999999  7799999999999999999999999998864  


Q ss_pred             --------ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          142 --------IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       142 --------~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                              ....+++.|+|||+  +..++.          +++|++ |..||.+...++.
T Consensus       202 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~  261 (314)
T 2ivs_A          202 EEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERL  261 (314)
T ss_dssp             TTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH
T ss_pred             ccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence                    23456788999996  222222          689999 9999987665543

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.96  E-value=9.5e-30  Score=212.99  Aligned_cols=165  Identities=16%  Similarity=0.197  Sum_probs=136.4

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||++...   ........+.+|+.+|+.++||||+++++++....    .+|+||||+++++|.+++.... 
T Consensus       136 ~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~-  207 (377)
T 3cbl_A          136 RADNTLVAVKSCRET---LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ----PIYIVMELVQGGDFLTFLRTEG-  207 (377)
T ss_dssp             TTTCCEEEEEECCTT---SCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHHG-
T ss_pred             ecCCeEEEEEEcccc---CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCC----CcEEEEEcCCCCCHHHHHHhcC-
Confidence            457899999998742   22445567889999999999999999999997654    4899999999999999998653 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc----------cCCCcccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI----------ENKKYLSATR  152 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~----------~~~~t~~y~a  152 (218)
                        ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++...          ...+++.|+|
T Consensus       208 --~~~~~~~~~~~~~qi~~~l~~LH~--~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~a  283 (377)
T 3cbl_A          208 --ARLRVKTLLQMVGDAAAGMEYLES--KCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTA  283 (377)
T ss_dssp             --GGCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSC
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCC
Confidence              348999999999999999999999  77999999999999999999999999998641          1234677999


Q ss_pred             cccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          153 QTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ||+.  ..++.          +++|+| |..||......+
T Consensus       284 PE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~  323 (377)
T 3cbl_A          284 PEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ  323 (377)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH
T ss_pred             HhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence            9972  23332          689998 999998765544

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.96  E-value=2.9e-29  Score=202.63  Aligned_cols=163  Identities=18%  Similarity=0.237  Sum_probs=134.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....  ........+.+|+.++..++||||+++++++.+..    .+++||||++ ++|.+++....
T Consensus        23 ~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~   95 (292)
T 3o0g_A           23 NRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDK----KLTLVFEFCD-QDLKKYFDSCN   95 (292)
T ss_dssp             ETTTCCEEEEEEEESSC--SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT----EEEEEEECCS-EEHHHHHHHTT
T ss_pred             ECCCCceEEEEeeeccC--CcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCC----EEEEEEecCC-CCHHHHHHhCC
Confidence            45689999999998543  22445567889999999999999999999997644    6999999996 57777766533


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+|+.|+||
T Consensus        96 ---~~l~~~~~~~~~~ql~~~l~~lH~--~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aP  170 (292)
T 3o0g_A           96 ---GDLDPEIVKSFLFQLLKGLGFCHS--RNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPP  170 (292)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcCh
Confidence               459999999999999999999999  7799999999999999999999999999864        345779999999


Q ss_pred             ccC--CC-Cch----------hhhhhhCCCCCCcch
Q psy238          154 TYG--RP-ISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~--~~-~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+.  .. ++.          +++|++|..||....
T Consensus       171 E~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~  206 (292)
T 3o0g_A          171 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN  206 (292)
T ss_dssp             HHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS
T ss_pred             HHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            972  22 333          688998999865443

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.96  E-value=3.5e-29  Score=216.47  Aligned_cols=166  Identities=18%  Similarity=0.235  Sum_probs=136.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++......  ......+.+|+.+++.++||||++++++|.+..    .+|+||||+++++|.+++....
T Consensus        58 ~~~~~~~~aiK~~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----~~~lv~e~~~~g~L~~~~~~~~  131 (494)
T 3lij_A           58 DKVTHVERAIKIIRKTSVS--TSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKR----NYYLVMECYKGGELFDEIIHRM  131 (494)
T ss_dssp             ETTTCCEEEEEEEEC-------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHHHS
T ss_pred             ECCCCcEEEEEEEeccccC--chHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC----EEEEEEecCCCCcHHHHHHHcC
Confidence            4568999999999753211  223467889999999999999999999997644    6899999999999999987763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---CCcEEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---NGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                          .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.   ++.++|+|||++..       ....||+.|+
T Consensus       132 ----~~~~~~~~~i~~qi~~~l~~lH~--~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~  205 (494)
T 3lij_A          132 ----KFNEVDAAVIIKQVLSGVTYLHK--HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYI  205 (494)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCee
Confidence                49999999999999999999999  77999999999999976   45699999998864       4567899999


Q ss_pred             ccccCC-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTYGR-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~~~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+.. .++.          +|+|++|..||.+....+
T Consensus       206 aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~  244 (494)
T 3lij_A          206 APEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE  244 (494)
T ss_dssp             CHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             CHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            999733 2332          699999999998766544

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.96  E-value=5.4e-29  Score=199.41  Aligned_cols=164  Identities=13%  Similarity=0.169  Sum_probs=137.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..||+|.+.....    .....+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        30 ~~~~~~~~a~k~~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~  101 (277)
T 3f3z_A           30 QKGTRIRRAAKKIPKYFV----EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNT----DIYLVMELCTGGELFERVVHKR  101 (277)
T ss_dssp             ETTTCCEEEEEEEEGGGC----SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHHHC
T ss_pred             eCCCCcEEEEEeehhhcc----chHHHHHHHHHHHHhCCCCCEeeEEEEEecCC----eEEEEEeccCCCcHHHHHHHcC
Confidence            456788999999974322    23457889999999999999999999997643    6899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE---ecCCcEEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI---QHNGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl---~~~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                          .+++..++.++.|++.||.|||+  .+|+|+||+|+|||+   +.++.++|+|||++..       ....+|+.|+
T Consensus       102 ----~~~~~~~~~i~~~i~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~  175 (277)
T 3f3z_A          102 ----VFRESDAARIMKDVLSAVAYCHK--LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYV  175 (277)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCcc
Confidence                49999999999999999999999  779999999999999   7789999999998864       4567899999


Q ss_pred             ccccCC-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTYGR-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~~~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+.. .++.          ++++++|..||......+
T Consensus       176 aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~  214 (277)
T 3f3z_A          176 SPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDSE  214 (277)
T ss_dssp             CHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             ChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCHHH
Confidence            999732 2222          699999999998765443

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.96  E-value=3.2e-29  Score=201.06  Aligned_cols=167  Identities=20%  Similarity=0.306  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        30 ~~~~~~~vavK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~l~~~~  104 (279)
T 3fdn_A           30 EKQSKFILALKVLFKAQL-EKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT----RVYLILEYAPLGTVYRELQKLS  104 (279)
T ss_dssp             ETTTCCEEEEEEEEHHHH-HHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEECCCTTEEHHHHHHHHS
T ss_pred             EccCCcEEEEEEEecccc-chhhHHHHHHHHHHHHHcCCCCCCcchhheEecCC----EEEEEEecCCCCcHHHHHHhcC
Confidence            456788999999974211 11223457889999999999999999999997654    6899999999999999998763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                          .+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..      ....+++.|+|||+
T Consensus       105 ----~~~~~~~~~~~~qi~~~l~~LH~--~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~  178 (279)
T 3fdn_A          105 ----KFDEQRTATYITELANALSYCHS--KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEM  178 (279)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHT--TTCEECCCCGGGEEECTTSCEEECSCCEESCC--------CCCCTTCCHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCEecccCChHhEEEcCCCCEEEEeccccccCCcccccccCCCCCccCHhH
Confidence                49999999999999999999999  7799999999999999999999999998754      45678999999997


Q ss_pred             --CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          156 --GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                        +..++.          ++++++|..||......+
T Consensus       179 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  214 (279)
T 3fdn_A          179 IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE  214 (279)
T ss_dssp             HTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             hccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH
Confidence              223222          699999999998765444

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.96  E-value=1.7e-28  Score=197.51  Aligned_cols=167  Identities=17%  Similarity=0.192  Sum_probs=137.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHH---HHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQE---EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~---~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|..||||++............   ..+.+|+.++..++||||+++++++.+.      .++||||+++++|.+++.
T Consensus        40 ~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~------~~lv~e~~~~~~L~~~l~  113 (287)
T 4f0f_A           40 LVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP------PRMVMEFVPCGDLYHRLL  113 (287)
T ss_dssp             ETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT------TEEEEECCTTCBHHHHHH
T ss_pred             EcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC------CeEEEEecCCCCHHHHHh
Confidence            4568999999999754333322222   6788999999999999999999998653      279999999999999887


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--cccCCCCCCcEEEecCCc-----EEEeecCcccc-----ccCCC
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPP--IIHGNLTCDTIFIQHNGL-----VKIGCDTYTHT-----IENKK  146 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~--iiH~dlkp~NiLl~~~~~-----~ki~dfg~~~~-----~~~~~  146 (218)
                      ...   ..+++..++.++.|++.||.|||+  .+  |+|+||+|+|||++.++.     ++|+|||++..     ....+
T Consensus       114 ~~~---~~~~~~~~~~~~~~l~~~l~~lH~--~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g  188 (287)
T 4f0f_A          114 DKA---HPIKWSVKLRLMLDIALGIEYMQN--QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLG  188 (287)
T ss_dssp             CTT---SCCCHHHHHHHHHHHHHHHHHHHT--SSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCC
T ss_pred             ccc---CCccHHHHHHHHHHHHHHHHHHHh--CCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccccccccCC
Confidence            643   459999999999999999999999  78  999999999999988776     99999999865     45678


Q ss_pred             cccccccccC--C--CCch----------hhhhhhCCCCCCcchhhh
Q psy238          147 YLSATRQTYG--R--PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       147 t~~y~aPE~~--~--~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+.|+|||+.  .  .++.          ++++++|..||.......
T Consensus       189 ~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~  235 (287)
T 4f0f_A          189 NFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGK  235 (287)
T ss_dssp             CCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCH
T ss_pred             CccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccH
Confidence            9999999974  2  1222          699999999998765544

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.96  E-value=2.3e-29  Score=201.58  Aligned_cols=171  Identities=19%  Similarity=0.269  Sum_probs=141.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....  ......+.+.+|+.++..++||||+++++++.+..  ...+++||||+++++|.+++....
T Consensus        27 ~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~  102 (279)
T 2w5a_A           27 RKSDGKILVWKELDYGS--MTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT--NTTLYIVMEYCEGGDLASVITKGT  102 (279)
T ss_dssp             ETTTCCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGG--GTEEEEEEECCTTEEHHHHHHHHH
T ss_pred             ECCCCcEEEEEEEEccc--CCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCC--CceEEEEEeCCCCCCHHHHHHhhc
Confidence            45689999999998542  22456678999999999999999999999886532  246899999999999999998766


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-----cccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPP-----IIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYL  148 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~-----iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~  148 (218)
                      .....+++..++.++.|++.||.|||+  .+     |+|+||+|+|||++.++.++|+|||++..        ....+++
T Consensus       103 ~~~~~~~~~~~~~i~~~i~~~l~~lH~--~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  180 (279)
T 2w5a_A          103 KERQYLDEEFVLRVMTQLTLALKECHR--RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTP  180 (279)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHHHH--HC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhc--ccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCc
Confidence            544569999999999999999999999  77     99999999999999999999999998865        2346789


Q ss_pred             ccccccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          149 SATRQTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       149 ~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .|+|||+  +..++.          +++|++|..||......
T Consensus       181 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  222 (279)
T 2w5a_A          181 YYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK  222 (279)
T ss_dssp             TTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             cccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH
Confidence            9999997  333333          69999999999876543

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.96  E-value=7.2e-30  Score=208.93  Aligned_cols=164  Identities=20%  Similarity=0.304  Sum_probs=136.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||||++...    .......+.+|+.++..++||||+++++++....    .+++||||+++++|.+++......
T Consensus        61 ~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~  132 (321)
T 2qkw_B           61 RDGAKVALKRRTPE----SSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN----EMILIYKYMENGNLKRHLYGSDLP  132 (321)
T ss_dssp             TTCCEEEEEECCSC----CSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT----CCEEEEECCTTCBTGGGSSSSCCC
T ss_pred             CCCCEEEEEEeccc----ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC----eEEEEEEcCCCCcHHHHHhccCCC
Confidence            36889999988743    2234567899999999999999999999987644    589999999999999998765433


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQ  153 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aP  153 (218)
                      ...+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....||+.|+||
T Consensus       133 ~~~~~~~~~~~i~~~i~~~l~~lH~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aP  210 (321)
T 2qkw_B          133 TMSMSWEQRLEICIGAARGLHYLHT--RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDP  210 (321)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHhcC--CCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCH
Confidence            3468999999999999999999999  7799999999999999999999999998864          223479999999


Q ss_pred             cc--CCCCch----------hhhhhhCCCCCCcchh
Q psy238          154 TY--GRPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+  +..++.          +++|++|+.||.....
T Consensus       211 E~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~  246 (321)
T 2qkw_B          211 EYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLP  246 (321)
T ss_dssp             HHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSS
T ss_pred             HHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCc
Confidence            97  233333          7999999999976543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=3.9e-29  Score=199.56  Aligned_cols=161  Identities=16%  Similarity=0.262  Sum_probs=134.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|++.....     ....+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....   
T Consensus        33 ~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~---  100 (269)
T 4hcu_A           33 NKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA----PICLVFEFMEHGCLSDYLRTQR---  100 (269)
T ss_dssp             TTEEEEEEEECTTSB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----SEEEEEECCTTCBHHHHHHTTT---
T ss_pred             CCCeEEEEEeccccc-----CHHHHHHHHHHHHhCCCCCEeeEEEEEecCC----ceEEEEEeCCCCcHHHHHHhcC---
Confidence            577899999974321     2246889999999999999999999997654    4899999999999999997643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..         ....+|+.|+|||+
T Consensus       101 ~~~~~~~~~~i~~~i~~~l~~lH~--~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  178 (269)
T 4hcu_A          101 GLFAAETLLGMCLDVCEGMAYLEE--ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEV  178 (269)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHh--CCeecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHH
Confidence            358999999999999999999999  7799999999999999999999999999864         34556778999997


Q ss_pred             --CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 --GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                        +..++.          ++++++ |..||......+
T Consensus       179 ~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~  215 (269)
T 4hcu_A          179 FSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE  215 (269)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             hcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH
Confidence              233333          688999 999998765543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.96  E-value=3.1e-29  Score=205.23  Aligned_cols=168  Identities=20%  Similarity=0.289  Sum_probs=138.9

Q ss_pred             CCCCCcEEEEEEeeccccccc--HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNF--KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~--~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||||++........  ......+.+|+.++..+.||||+++++++.+..    .+++||||+++++|.+++..
T Consensus        33 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~  108 (321)
T 2a2a_A           33 EKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRT----DVVLILELVSGGELFDFLAQ  108 (321)
T ss_dssp             ETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHT
T ss_pred             ECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCC----EEEEEEEcCCCCcHHHHHHh
Confidence            456899999999985432211  113567889999999999999999999997643    68999999999999999976


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC----cEEEeecCcccc-------ccCCCcc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG----LVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~----~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      .    ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++    .++|+|||++..       ....||+
T Consensus       109 ~----~~~~~~~~~~i~~qi~~aL~~lH~--~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~  182 (321)
T 2a2a_A          109 K----ESLSEEEATSFIKQILDGVNYLHT--KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTP  182 (321)
T ss_dssp             C----SCEEHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCG
T ss_pred             c----CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCC
Confidence            4    358999999999999999999999  7799999999999999887    899999999865       3456899


Q ss_pred             cccccccC--CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          149 SATRQTYG--RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       149 ~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      .|+|||+.  .+++.          +++|++|..||.+....+
T Consensus       183 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  225 (321)
T 2a2a_A          183 EFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE  225 (321)
T ss_dssp             GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH
T ss_pred             CccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHH
Confidence            99999972  33333          699999999998765443

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.96  E-value=8.9e-29  Score=205.35  Aligned_cols=164  Identities=16%  Similarity=0.150  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-----CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-----HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF   76 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-----hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~   76 (218)
                      +..+|..||||++...     ......+..|+.++..+.     ||||+++++++....    .+|+||||+ +++|.++
T Consensus        56 ~~~~~~~vavK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~----~~~lv~e~~-~~~L~~~  125 (360)
T 3llt_A           56 HIDNKKYYAVKVVRNI-----KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYD----HMCLIFEPL-GPSLYEI  125 (360)
T ss_dssp             ETTTCCEEEEEEECSC-----HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETT----EEEEEECCC-CCBHHHH
T ss_pred             ECCCCeEEEEEEeccc-----hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECC----eeEEEEcCC-CCCHHHH
Confidence            4568999999999632     345566778889888886     999999999998754    699999999 8999999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-------------------------CCcE
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-------------------------NGLV  131 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-------------------------~~~~  131 (218)
                      +.....  ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.                         ++.+
T Consensus       126 ~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (360)
T 3llt_A          126 ITRNNY--NGFHIEDIKLYCIEILKALNYLRK--MSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGI  201 (360)
T ss_dssp             HHHTTT--CCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCE
T ss_pred             HHhcCC--CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCE
Confidence            987643  459999999999999999999999  77999999999999975                         7899


Q ss_pred             EEeecCcccc-----ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          132 KIGCDTYTHT-----IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       132 ki~dfg~~~~-----~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +|+|||++..     ....||+.|+|||+  +.+++.          +|+|++|..||......+
T Consensus       202 kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~  266 (360)
T 3llt_A          202 KLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHME  266 (360)
T ss_dssp             EECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             EEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHH
Confidence            9999999875     45678999999997  333333          699999999998765443

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.96  E-value=3.9e-29  Score=205.42  Aligned_cols=161  Identities=13%  Similarity=0.104  Sum_probs=135.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++.....      ...+.+|+.++..+ +||||+.+++++....    ..++||||+ +++|.+++...
T Consensus        30 ~~~~~~~vavK~~~~~~~------~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~----~~~lv~e~~-~~~L~~~~~~~   98 (330)
T 2izr_A           30 NLYTNEYVAIKLEPMKSR------APQLHLEYRFYKQLGSGDGIPQVYYFGPCGK----YNAMVLELL-GPSLEDLFDLC   98 (330)
T ss_dssp             ETTTTEEEEEEEEETTCS------SCCHHHHHHHHHHHCSCTTSCCEEEEEEETT----EEEEEEECC-CCBHHHHHHHT
T ss_pred             ECCCCcEEEEEEeccccc------hHHHHHHHHHHHHhhCCCCCCEEEEEEecCC----ccEEEEEeC-CCCHHHHHHHc
Confidence            457899999999875322      23577899999999 9999999999987743    689999999 89999999875


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc-----EEEeecCcccc--------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL-----VKIGCDTYTHT--------------  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~-----~ki~dfg~~~~--------------  141 (218)
                      .   ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.     ++|+|||++..              
T Consensus        99 ~---~~~~~~~~~~i~~qi~~~l~~LH~--~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~  173 (330)
T 2izr_A           99 D---RTFSLKTVLMIAIQLISRMEYVHS--KNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYRE  173 (330)
T ss_dssp             T---TCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCC
T ss_pred             C---CCCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccc
Confidence            2   459999999999999999999999  77999999999999998887     99999999864              


Q ss_pred             -ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          142 -IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       142 -~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                       ....||+.|+|||+  +..++.          +++|++|..||.+....
T Consensus       174 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~  223 (330)
T 2izr_A          174 HKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD  223 (330)
T ss_dssp             CCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCS
T ss_pred             cCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccc
Confidence             24578999999997  333333          69999999999876443

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.96  E-value=4.2e-29  Score=204.86  Aligned_cols=166  Identities=22%  Similarity=0.289  Sum_probs=139.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..    ........+.+|+.++..++||||+++++++....  ...+++||||+++++|.+++....
T Consensus        48 ~~~~~~~vavK~~~~----~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~  121 (327)
T 3lxl_A           48 GDNTGALVAVKQLQH----SGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPG--RQSLRLVMEYLPSGCLRDFLQRHR  121 (327)
T ss_dssp             SSSCSEEEEEEEESS----CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--SCEEEEEEECCTTCBHHHHHHHHG
T ss_pred             CCCcceEEEEEEecc----CCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCC--CceEEEEEeecCCCCHHHHHHhcc
Confidence            567899999999974    23455677899999999999999999999887533  346899999999999999998754


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y  150 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..           ....+|..|
T Consensus       122 ---~~~~~~~~~~i~~qi~~al~~lH~--~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  196 (327)
T 3lxl_A          122 ---ARLDASRLLLYSSQICKGMEYLGS--RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFW  196 (327)
T ss_dssp             ---GGCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGG
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHh--CCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccc
Confidence               249999999999999999999999  7799999999999999999999999998864           234577889


Q ss_pred             ccccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          151 TRQTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       151 ~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +|||+  +..++.          +++|++|..||.....+
T Consensus       197 ~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~  236 (327)
T 3lxl_A          197 YAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE  236 (327)
T ss_dssp             SCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH
T ss_pred             cCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccch
Confidence            99996  222222          79999999999765543

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.96  E-value=2.5e-29  Score=202.79  Aligned_cols=164  Identities=18%  Similarity=0.219  Sum_probs=133.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||||++.....  .......+.+|+.+++.++||||+++++++....    .+++||||++ ++|.+++....  
T Consensus        24 ~~~~~~aiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~--   94 (288)
T 1ob3_A           24 NYGETFALKKIRLEKE--DEGIPSTTIREISILKELKHSNIVKLYDVIHTKK----RLVLVFEHLD-QDLKKLLDVCE--   94 (288)
T ss_dssp             TTSCEEEEEEECCSSG--GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS----CEEEEEECCS-EEHHHHHHTST--
T ss_pred             CCCCEEEEEEEecccc--ccccchhHHHHHHHHHhcCCCCEeeeeeEEccCC----eEEEEEEecC-CCHHHHHHhcc--
Confidence            4689999999975421  1223456789999999999999999999997654    5999999997 59999987643  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQTY  155 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE~  155 (218)
                       ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+|+.|+|||+
T Consensus        95 -~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~  171 (288)
T 1ob3_A           95 -GGLESVTAKSFLLQLLNGIAYCHD--RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDV  171 (288)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHH
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccCchh
Confidence             358999999999999999999999  7799999999999999999999999998864        33577999999997


Q ss_pred             CC---CCch----------hhhhhhCCCCCCcchhhh
Q psy238          156 GR---PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 ~~---~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ..   .++.          +++|++|..||.+....+
T Consensus       172 ~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~  208 (288)
T 1ob3_A          172 LMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD  208 (288)
T ss_dssp             HTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             eeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            32   2333          699999999998765443

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.96  E-value=6.4e-29  Score=215.31  Aligned_cols=169  Identities=18%  Similarity=0.221  Sum_probs=138.3

Q ss_pred             CCCCCcEEEEEEeeccccccc---------HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNF---------KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGS   72 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~---------~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~s   72 (218)
                      +..+|..||||++........         ......+.+|+.+|..++||||+++++++.+..    .+|+||||+++++
T Consensus        57 ~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----~~~lv~e~~~gg~  132 (504)
T 3q5i_A           57 EKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKK----YFYLVTEFYEGGE  132 (504)
T ss_dssp             ETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEEECCTTCB
T ss_pred             ECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC----EEEEEEecCCCCc
Confidence            456889999999985321110         123567889999999999999999999997643    6999999999999


Q ss_pred             HHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC---cEEEeecCcccc-------c
Q psy238           73 LKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG---LVKIGCDTYTHT-------I  142 (218)
Q Consensus        73 L~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~---~~ki~dfg~~~~-------~  142 (218)
                      |.+++....    .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++   .++|+|||++..       .
T Consensus       133 L~~~l~~~~----~~~~~~~~~i~~qi~~~l~~lH~--~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~  206 (504)
T 3q5i_A          133 LFEQIINRH----KFDECDAANIMKQILSGICYLHK--HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLR  206 (504)
T ss_dssp             HHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBC
T ss_pred             HHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHH--CCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccc
Confidence            999998753    49999999999999999999999  7799999999999998775   699999999864       4


Q ss_pred             cCCCcccccccccCC-CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          143 ENKKYLSATRQTYGR-PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       143 ~~~~t~~y~aPE~~~-~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ...||+.|+|||+.. .++.          +|++++|..||.+....+.
T Consensus       207 ~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~  255 (504)
T 3q5i_A          207 DRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDI  255 (504)
T ss_dssp             CCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             cccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            567899999999733 3333          6899999999987665443

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.96  E-value=2.1e-29  Score=217.17  Aligned_cols=167  Identities=18%  Similarity=0.253  Sum_probs=138.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+.+|+.++..++||||+++++++.+..    .+|+||||+.+++|.+++... 
T Consensus        47 ~~~~~~~~avK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~-  120 (484)
T 3nyv_A           47 DKITGQECAVKVISKRQVK-QKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKG----YFYLVGEVYTGGELFDEIISR-  120 (484)
T ss_dssp             ETTTCCEEEEEEEETTTCC-BSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHTC-
T ss_pred             ECCCCCEEEEEEEEhhhcc-cchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC----EEEEEEecCCCCCHHHHHHhc-
Confidence            4568999999999754222 1234567899999999999999999999997744    699999999999999999765 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE---ecCCcEEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI---QHNGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl---~~~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||+   +.++.++|+|||++..       ....||+.|+
T Consensus       121 ---~~~~~~~~~~i~~qi~~~l~~lH~--~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~  195 (484)
T 3nyv_A          121 ---KRFSEVDAARIIRQVLSGITYMHK--NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYI  195 (484)
T ss_dssp             ---SCCBHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCcccc
Confidence               349999999999999999999999  779999999999999   4678999999998864       3456899999


Q ss_pred             ccccCC-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTYGR-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~~~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+.. .++.          +|++++|..||.+....+
T Consensus       196 aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~  234 (484)
T 3nyv_A          196 APEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYD  234 (484)
T ss_dssp             CHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             CceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCHHH
Confidence            999722 2332          699999999998765543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.96  E-value=6.9e-29  Score=197.63  Aligned_cols=167  Identities=15%  Similarity=0.210  Sum_probs=138.8

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||++...  .........+.+|+.++..++||||+++++++.+..  ...+++||||+++++|.+++.....  
T Consensus        32 ~~~~~avK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~~--  105 (271)
T 3kmu_A           32 QGNDIVVKVLKVR--DWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPP--APHPTLITHWMPYGSLYNVLHEGTN--  105 (271)
T ss_dssp             TTEEEEEEEECCT--TCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTT--SSSCEEEEECCTTCBHHHHHHSCSS--
T ss_pred             CCeeEEEEEeccc--ccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCC--CCCeEeeecccCCCcHHHHHhhccc--
Confidence            4788999999854  223455678999999999999999999999987642  2468999999999999999986532  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCC--cccCCCCCCcEEEecCCcEEEeecCcccc---ccCCCcccccccccCC--
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPP--IIHGNLTCDTIFIQHNGLVKIGCDTYTHT---IENKKYLSATRQTYGR--  157 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~--iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---~~~~~t~~y~aPE~~~--  157 (218)
                      ..+++..++.++.|++.||.|||+  .+  |+|+||+|+|||++.++.++|+|||++..   ....+|+.|+|||+..  
T Consensus       106 ~~~~~~~~~~i~~qi~~~l~~lH~--~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  183 (271)
T 3kmu_A          106 FVVDQSQAVKFALDMARGMAFLHT--LEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKK  183 (271)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTT--SSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTCBSCGGGSCHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc--CCCceecCCCccceEEEcCCcceeEEeccceeeecccCccCCccccChhhhccC
Confidence            358999999999999999999999  77  99999999999999999999998887654   5667899999999722  


Q ss_pred             CCch-------------hhhhhhCCCCCCcchhhh
Q psy238          158 PISG-------------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       158 ~~~~-------------~~ei~tg~~p~~~~~~ee  179 (218)
                      ..+.             ++++++|..||......+
T Consensus       184 ~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~  218 (271)
T 3kmu_A          184 PEDTNRRSADMWSFAVLLWELVTREVPFADLSNME  218 (271)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHH
T ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCccccChHH
Confidence            1111             699999999998765544

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.96  E-value=2.2e-28  Score=197.52  Aligned_cols=166  Identities=21%  Similarity=0.185  Sum_probs=139.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++..... ........+.+|+.+++.+.||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        36 ~~~~~~~~a~K~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~  110 (294)
T 2rku_A           36 DADTKEVFAGKIVPKSLL-LKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND----FVFVVLELCRRRSLLELHKRRK  110 (294)
T ss_dssp             ETTTCCEEEEEEEEGGGC-CSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEEECCTTCBHHHHHHHHC
T ss_pred             ECCCCceEEEEEechhhc-cCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCC----EEEEEEecCCCCCHHHHHHhcC
Confidence            456789999999975422 22456678889999999999999999999997643    6899999999999999987653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+|+.|+||
T Consensus       111 ----~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  184 (294)
T 2rku_A          111 ----ALTEPEARYYLRQIVLGCQYLHR--NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAP  184 (294)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCc
Confidence                49999999999999999999999  7799999999999999999999999999864        335688999999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.  ...+.          ++++++|..||......
T Consensus       185 E~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~  221 (294)
T 2rku_A          185 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK  221 (294)
T ss_dssp             HHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             chhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            973  23332          68999999999876543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.96  E-value=4.9e-29  Score=212.23  Aligned_cols=162  Identities=14%  Similarity=0.102  Sum_probs=132.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++...  .........+.+|+.+|..++||||+++++++..... ....+|+||||+. ++|.+++...
T Consensus        47 ~~~~~~~vAiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~  123 (432)
T 3n9x_A           47 DKNTEKNVAIKKVNRM--FEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SDLKKLFKTP  123 (432)
T ss_dssp             ETTTTEEEEEEEECST--TTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EEHHHHHHSS
T ss_pred             ECCCCcEEEEEEeCch--hcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cCHHHHHhcc
Confidence            5678999999999743  2335566789999999999999999999999876431 2246899999995 6999999754


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------------------  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------------------  141 (218)
                          ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..                   
T Consensus       124 ----~~l~~~~~~~i~~qil~aL~~LH~--~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~  197 (432)
T 3n9x_A          124 ----IFLTEEHIKTILYNLLLGENFIHE--SGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEP  197 (432)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTCCEEECCCTTCEEC------------------
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccc
Confidence                349999999999999999999999  7799999999999999999999999999864                   


Q ss_pred             -----------ccCCCccccccccc---CCCCch----------hhhhhhCCCCC
Q psy238          142 -----------IENKKYLSATRQTY---GRPISG----------QYEIVTKTNNV  172 (218)
Q Consensus       142 -----------~~~~~t~~y~aPE~---~~~~~~----------~~ei~tg~~p~  172 (218)
                                 ....||++|+|||+   +..++.          +++|++|..||
T Consensus       198 ~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          198 GPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             -------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence                       34577999999996   223333          68999754444

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.96  E-value=2.3e-28  Score=201.40  Aligned_cols=166  Identities=21%  Similarity=0.192  Sum_probs=139.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++..... ........+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++....
T Consensus        62 ~~~~~~~~a~K~~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~  136 (335)
T 2owb_A           62 DADTKEVFAGKIVPKSLL-LKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND----FVFVVLELCRRRSLLELHKRRK  136 (335)
T ss_dssp             ETTTCCEEEEEEEEGGGC-CSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEECCCTTCBHHHHHHHHC
T ss_pred             ECCCCCEEEEEEechhhh-cCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC----eEEEEEecCCCCCHHHHHhccC
Confidence            456789999999975322 22456678899999999999999999999997643    6899999999999999988653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+|..|+||
T Consensus       137 ----~l~~~~~~~i~~qi~~aL~~LH~--~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  210 (335)
T 2owb_A          137 ----ALTEPEARYYLRQIVLGCQYLHR--NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAP  210 (335)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCCEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCH
Confidence                49999999999999999999999  7799999999999999999999999999864        335689999999


Q ss_pred             cc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+  +..++.          +++|++|..||......
T Consensus       211 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  247 (335)
T 2owb_A          211 EVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK  247 (335)
T ss_dssp             HHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH
Confidence            97  333332          69999999999875543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.96  E-value=7.8e-29  Score=206.98  Aligned_cols=167  Identities=16%  Similarity=0.131  Sum_probs=132.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC--CCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH--NDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~--~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||++...  .........+.+|+.+++.++||||+++++++....  .....+|+||||++ ++|.+++..
T Consensus        46 ~~~~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~  122 (371)
T 2xrw_A           46 DAILERNVAIKKLSRP--FQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQM  122 (371)
T ss_dssp             ETTTTEEEEEEEEECT--TSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCS-EEHHHHHHS
T ss_pred             ECCCCceEEEEEeccc--cCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEEcCC-CCHHHHHhh
Confidence            4578999999999743  223456678889999999999999999999987643  22347899999996 689888852


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                            .+++..+..++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....+|+.|+|
T Consensus       123 ------~~~~~~~~~i~~qi~~al~~lH~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a  194 (371)
T 2xrw_A          123 ------ELDHERMSYLLYQMLCGIKHLHS--AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRA  194 (371)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTSCEEECCCCC----------------CTTCC
T ss_pred             ------ccCHHHHHHHHHHHHHHHHHHHH--CCeecccCCHHHEEEcCCCCEEEEEeecccccccccccCCceecCCccC
Confidence                  38999999999999999999999  7799999999999999999999999999865       34578999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+  +.+++.          +++|++|..||.+....+
T Consensus       195 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~  233 (371)
T 2xrw_A          195 PEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID  233 (371)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             HHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            997  333333          699999999998765443

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.96  E-value=2.7e-29  Score=208.26  Aligned_cols=161  Identities=14%  Similarity=0.186  Sum_probs=123.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...      .....+.+|+.++..++||||+++++++....    .+++||||+++++|.+++... 
T Consensus        74 ~~~~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-  142 (349)
T 2w4o_A           74 QKGTQKPYALKVLKKT------VDKKIVRTEIGVLLRLSHPNIIKLKEIFETPT----EISLVLELVTGGELFDRIVEK-  142 (349)
T ss_dssp             ETTTCCEEEEEEEEC----------------CHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHTTC-
T ss_pred             ECCCCcEEEEEEeccc------hhHHHHHHHHHHHHhCCCCCCcceeeeEecCC----eEEEEEEeCCCCCHHHHHHhc-
Confidence            3467899999999742      23456788999999999999999999997644    689999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---CCcEEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---NGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                         ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.   ++.++|+|||++..       ....||+.|+
T Consensus       143 ---~~~~~~~~~~i~~qi~~~L~~LH~--~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~  217 (349)
T 2w4o_A          143 ---GYYSERDAADAVKQILEAVAYLHE--NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYC  217 (349)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGS
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCcc
Confidence               348999999999999999999999  77999999999999975   89999999999865       3457899999


Q ss_pred             ccccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          152 RQTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       152 aPE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |||+.  ..++.          +|+|++|..||......
T Consensus       218 aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~  256 (349)
T 2w4o_A          218 APEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD  256 (349)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH
T ss_pred             CHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc
Confidence            99973  23333          69999999999765443

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=206.81  Aligned_cols=167  Identities=17%  Similarity=0.233  Sum_probs=138.1

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .++..||||++...   ........+.+|+.++..+ +||||+++++++....    .+++||||+++++|.+++.....
T Consensus        99 ~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~~  171 (382)
T 3tt0_A           99 NRVTKVAVKMLKSD---ATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG----PLYVIVEYASKGNLREYLQARRP  171 (382)
T ss_dssp             TCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHTCC
T ss_pred             ccceEEEEEeeccc---cCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC----ceEEEEEecCCCcHHHHHHHhcc
Confidence            34567999999743   3355667889999999999 9999999999997654    48999999999999999987642


Q ss_pred             c------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------
Q psy238           83 N------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------  141 (218)
Q Consensus        83 ~------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------  141 (218)
                      .            ...+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..         
T Consensus       172 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~  249 (382)
T 3tt0_A          172 PGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS--KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK  249 (382)
T ss_dssp             SSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCC
T ss_pred             cccccccccccccccccCHHHHHHHHHHHHHHHHHHHh--CCEecCCCCcceEEEcCCCcEEEcccCccccccccccccc
Confidence            1            1358999999999999999999999  7799999999999999999999999999864         


Q ss_pred             -ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          142 -IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       142 -~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                       ....+|+.|+|||+  +..++.          ++++++ |..||.+...++
T Consensus       250 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~  301 (382)
T 3tt0_A          250 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE  301 (382)
T ss_dssp             CTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred             ccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence             33456788999997  334343          688998 999998765443

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.96  E-value=7.7e-29  Score=203.71  Aligned_cols=166  Identities=16%  Similarity=0.183  Sum_probs=137.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...  .........+.+|+.++..++||||+++++++.+..    .+|+||||+++++|..++... 
T Consensus        46 ~~~~~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~-  118 (331)
T 4aaa_A           46 NKDTGRIVAIKKFLES--DDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKK----RWYLVFEFVDHTILDDLELFP-  118 (331)
T ss_dssp             ETTTCCEEEEEEEESC--SSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCSEEHHHHHHHST-
T ss_pred             ECCCCceEEEEEEecC--CCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCC----EEEEEEecCCcchHHHHHhhc-
Confidence            4567999999998754  233556677889999999999999999999997644    689999999988888876644 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+|..|+||
T Consensus       119 ---~~~~~~~~~~~~~qi~~~l~~LH~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aP  193 (331)
T 4aaa_A          119 ---NGLDYQVVQKYLFQIINGIGFCHS--HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAP  193 (331)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTCCH
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHH--CCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCc
Confidence               349999999999999999999999  7799999999999999999999999998864        345789999999


Q ss_pred             ccCC---CCch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TYGR---PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~~~---~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+..   .++.          +++|++|..||.+....+
T Consensus       194 E~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  232 (331)
T 4aaa_A          194 ELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID  232 (331)
T ss_dssp             HHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             ccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH
Confidence            9722   2332          699999999998766544

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.96  E-value=1.6e-28  Score=200.11  Aligned_cols=166  Identities=14%  Similarity=0.083  Sum_probs=135.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++.... .........+.+|+.++..++||||+++++++....    .+|+||||+++++|.+++....
T Consensus        55 ~~~~~~~vaiK~~~~~~-~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  129 (309)
T 2h34_A           55 DTVRERIVALKLMSETL-SSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDG----QLYVDMRLINGVDLAAMLRRQG  129 (309)
T ss_dssp             ETTTTEEEEEEECGGGG-GGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT----EEEEEEECCCCEEHHHHHHHHC
T ss_pred             EcCCCeEEEEEecCccc-ccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCC----eEEEEEEecCCCCHHHHHHhcC
Confidence            45688999999997432 223455678899999999999999999999997743    6899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          .+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..         ....+++.|+|
T Consensus       130 ----~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a  203 (309)
T 2h34_A          130 ----PLAPPRAVAIVRQIGSALDAAHA--AGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMA  203 (309)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTSCEEECSCCC----------------CCGGGCC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CcCCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccC
Confidence                49999999999999999999999  7799999999999999999999999998754         24578999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+..  .++.          ++++++|..||......
T Consensus       204 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  241 (309)
T 2h34_A          204 PERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS  241 (309)
T ss_dssp             GGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH
T ss_pred             HHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH
Confidence            99732  2222          69999999999875543

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.96  E-value=9.3e-29  Score=198.65  Aligned_cols=162  Identities=23%  Similarity=0.305  Sum_probs=127.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|++...   ........+.+|+.++..++||||+++++++.+.     .+|+||||+++++|.+++....   
T Consensus        42 ~~~~vaiK~~~~~---~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~---  110 (281)
T 1mp8_A           42 PALAVAIKTCKNC---TSDSVREKFLQEALTMRQFDHPHIVKLIGVITEN-----PVWIIMELCTLGELRSFLQVRK---  110 (281)
T ss_dssp             CCEEEEEEECTTT---TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-----SCEEEEECCTTEEHHHHHHHTT---
T ss_pred             CceEEEEEecccc---CCHHHHHHHHHHHHHHHhCCCCccceEEEEEccC-----ccEEEEecCCCCCHHHHHHhcC---
Confidence            4567999988742   2355667889999999999999999999998542     4799999999999999998643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....+++.|+|||+
T Consensus       111 ~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  188 (281)
T 1mp8_A          111 YSLDLASLILYAYQLSTALAYLES--KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPES  188 (281)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCeecccccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhh
Confidence            358999999999999999999999  7799999999999999999999999998864         23455678999997


Q ss_pred             --CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 --GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                        +..++.          ++++++ |..||.+....+
T Consensus       189 ~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~  225 (281)
T 1mp8_A          189 INFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND  225 (281)
T ss_dssp             HHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG
T ss_pred             cccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH
Confidence              233333          688886 999998765544

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.96  E-value=3.7e-29  Score=222.19  Aligned_cols=165  Identities=14%  Similarity=0.165  Sum_probs=135.0

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..++..||||++...  .........+.+|+.+|..++||||+++++++...     .+++||||+++++|.+++...  
T Consensus       393 ~~~~~~vAvK~~~~~--~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~-----~~~lv~E~~~~g~L~~~l~~~--  463 (635)
T 4fl3_A          393 KKVVKTVAVKILKNE--ANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-----SWMLVMEMAELGPLNKYLQQN--  463 (635)
T ss_dssp             SSCEEEEEEEEECGG--GGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESS-----SEEEEEECCTTEEHHHHHHHC--
T ss_pred             CCcceEEEEEEeccc--cCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-----CEEEEEEccCCCCHHHHHhhC--
Confidence            356788999999753  22234457799999999999999999999998643     389999999999999999754  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSAT  151 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~  151 (218)
                        ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..           ....+|+.|+
T Consensus       464 --~~l~~~~~~~i~~qi~~~L~yLH~--~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~  539 (635)
T 4fl3_A          464 --RHVKDKNIIELVHQVSMGMKYLEE--SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY  539 (635)
T ss_dssp             --TTCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGS
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHH--CCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeee
Confidence              349999999999999999999999  7799999999999999999999999998864           2334567899


Q ss_pred             cccc--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          152 RQTY--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       152 aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      |||+  +..++.          +++|++ |..||.+....+.
T Consensus       540 APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~  581 (635)
T 4fl3_A          540 APECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV  581 (635)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH
T ss_pred             ChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            9997  223333          689998 9999987766543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.96  E-value=4.7e-30  Score=225.28  Aligned_cols=140  Identities=9%  Similarity=0.016  Sum_probs=117.9

Q ss_pred             CCCcEEEEEEeecccc------cccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHH
Q psy238            4 EEGVEVVWNEVQFSER------KNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF   76 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~------~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~   76 (218)
                      ..|..||||++.....      .......+.+.+|+++|+.+ .|+||+++++++.+..    .+||||||++|++|.++
T Consensus       257 ~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~----~~yLVMEyv~G~~L~d~  332 (569)
T 4azs_A          257 FFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQ----SGWLVMEKLPGRLLSDM  332 (569)
T ss_dssp             EECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSS----EEEEEEECCCSEEHHHH
T ss_pred             cccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECC----EEEEEEecCCCCcHHHH
Confidence            3688999999974311      11234556799999999999 7999999999998754    69999999999999999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcc
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYL  148 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~  148 (218)
                      |...    ++++..   .++.||+.||.|||+  +|||||||||+|||++.+|.+||+|||+++.        .+.+||+
T Consensus       333 i~~~----~~l~~~---~I~~QIl~AL~ylH~--~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp  403 (569)
T 4azs_A          333 LAAG----EEIDRE---KILGSLLRSLAALEK--QGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSF  403 (569)
T ss_dssp             HHTT----CCCCHH---HHHHHHHHHHHHHHH--TTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHH
T ss_pred             HHhC----CCCCHH---HHHHHHHHHHHHHHH--CCceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceech
Confidence            9865    346654   478999999999999  7799999999999999999999999999865        3456899


Q ss_pred             cccccccC
Q psy238          149 SATRQTYG  156 (218)
Q Consensus       149 ~y~aPE~~  156 (218)
                      +|+|||+.
T Consensus       404 ~YmAPE~l  411 (569)
T 4azs_A          404 FVFVNELF  411 (569)
T ss_dssp             HHHHHHHC
T ss_pred             hhccHHHh
Confidence            99999973

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.96  E-value=3.9e-29  Score=202.20  Aligned_cols=160  Identities=20%  Similarity=0.191  Sum_probs=129.0

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhc--CCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQ--LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~--l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      .+|..||||++...       ....+..|.+++..  ++||||+++++++.........+|+||||+++++|.+++..  
T Consensus        29 ~~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--   99 (301)
T 3q4u_A           29 WQGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL--   99 (301)
T ss_dssp             ETTEEEEEEEECGG-------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTT--
T ss_pred             ECCEEEEEEEeccc-------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhh--
Confidence            36889999998732       22344555665555  79999999999987655555678999999999999999954  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLH--------SCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------  141 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH--------~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------  141 (218)
                         ..+++..++.++.|++.||.|||        +  .+|+||||+|+|||++.++.++|+|||++..            
T Consensus       100 ---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~--~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  174 (301)
T 3q4u_A          100 ---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGK--PAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGN  174 (301)
T ss_dssp             ---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCB--CEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCC
T ss_pred             ---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCC--CCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccc
Confidence               34999999999999999999999        8  7799999999999999999999999998854            


Q ss_pred             ccCCCcccccccccCCCC--------ch----------hhhhhhC----------CCCCCcchh
Q psy238          142 IENKKYLSATRQTYGRPI--------SG----------QYEIVTK----------TNNVTEKKK  177 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~~~~--------~~----------~~ei~tg----------~~p~~~~~~  177 (218)
                      ....||+.|+|||+....        +.          +++|++|          ..||.....
T Consensus       175 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~  238 (301)
T 3q4u_A          175 NPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVP  238 (301)
T ss_dssp             CCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC
T ss_pred             cccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCC
Confidence            223789999999973321        11          6999999          888865433

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.96  E-value=6.8e-29  Score=199.60  Aligned_cols=166  Identities=16%  Similarity=0.266  Sum_probs=137.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        35 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  109 (284)
T 2vgo_A           35 EKQNKFIMALKVLFKSQLE-KEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRK----RIYLMLEFAPRGELYKELQKHG  109 (284)
T ss_dssp             ETTTTEEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEECCCTTEEHHHHHHHHS
T ss_pred             EcCCCcEEEEEEEcccccc-hHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCC----EEEEEEEeCCCCcHHHHHHhcC
Confidence            3467889999999743111 1123457889999999999999999999997643    6899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                          .+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..      ....+++.|+|||+
T Consensus       110 ----~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~  183 (284)
T 2vgo_A          110 ----RFDEQRSATFMEELADALHYCHE--RKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEM  183 (284)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHT--TTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCceecCCCHHHEEEcCCCCEEEecccccccCcccccccccCCCCcCCHHH
Confidence                49999999999999999999999  7799999999999999999999999998754      45678999999997


Q ss_pred             C--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          156 G--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .  ..++.          ++++++|..||......
T Consensus       184 ~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  218 (284)
T 2vgo_A          184 IEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT  218 (284)
T ss_dssp             HTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             hccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh
Confidence            2  23332          68999999999876543

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.96  E-value=9.5e-29  Score=200.99  Aligned_cols=168  Identities=19%  Similarity=0.232  Sum_probs=138.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...   ........+.+|+.++..+ +||||+++++++.+..    ..++||||+++++|.+++...
T Consensus        49 ~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~  121 (313)
T 1t46_A           49 KSDAAMTVAVKMLKPS---AHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG----PTLVITEYCCYGDLLNFLRRK  121 (313)
T ss_dssp             STTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTEEHHHHHHHT
T ss_pred             ccchhhhhHHHhcCcc---hhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC----CcEEEEecCCCCCHHHHHHhc
Confidence            4567889999999743   2244567889999999999 9999999999997654    489999999999999999875


Q ss_pred             ccc--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----
Q psy238           81 KRN--------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----  141 (218)
Q Consensus        81 ~~~--------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----  141 (218)
                      ...              ...+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..     
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  199 (313)
T 1t46_A          122 RDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS--KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDS  199 (313)
T ss_dssp             TTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCT
T ss_pred             ccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCccceEEEcCCCCEEEccccccccccccc
Confidence            421              1248999999999999999999999  7799999999999999999999999998865     


Q ss_pred             -----ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          142 -----IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       142 -----~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                           ....+|+.|+|||+  +..++.          +++|++ |..||.+....
T Consensus       200 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~  254 (313)
T 1t46_A          200 NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD  254 (313)
T ss_dssp             TSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSS
T ss_pred             cceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccch
Confidence                 23345678999996  333333          689998 99999876544

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.96  E-value=9e-29  Score=205.96  Aligned_cols=168  Identities=14%  Similarity=0.148  Sum_probs=132.2

Q ss_pred             CCcEEEEEEeecccccccH-------HHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHH
Q psy238            5 EGVEVVWNEVQFSERKNFK-------AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~-------~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      .+..||||++.........       .....+..++..+..+.||||+++++++.....+..++|+||||+ +++|.+++
T Consensus        64 ~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~  142 (364)
T 3op5_A           64 SDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIY  142 (364)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHH
T ss_pred             cccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHH
Confidence            4688999998743211000       001123445667788899999999999987655456789999999 89999999


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe--cCCcEEEeecCcccc--------------
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ--HNGLVKIGCDTYTHT--------------  141 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~--~~~~~ki~dfg~~~~--------------  141 (218)
                      ....   ..+++..++.++.||+.||.|||+  .+|+||||||+|||++  .++.++|+|||++..              
T Consensus       143 ~~~~---~~l~~~~~~~i~~qi~~~l~~lH~--~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~  217 (364)
T 3op5_A          143 EANA---KRFSRKTVLQLSLRILDILEYIHE--HEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADP  217 (364)
T ss_dssp             HHTT---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCS
T ss_pred             Hhcc---CCCCHHHHHHHHHHHHHHHHHHHH--CCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCc
Confidence            8743   459999999999999999999999  7799999999999999  889999999999854              


Q ss_pred             -ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          142 -IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       142 -~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                       ....||+.|+|||+  +..++.          +|+|++|..||.+....
T Consensus       218 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~  267 (364)
T 3op5_A          218 KRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD  267 (364)
T ss_dssp             SCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred             ccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence             22349999999997  333333          79999999999865443

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.96  E-value=8.9e-29  Score=206.32  Aligned_cols=166  Identities=14%  Similarity=0.247  Sum_probs=138.0

Q ss_pred             CCCCCcEEEEEEeeccccc----ccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERK----NFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF   76 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~----~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~   76 (218)
                      +..+|..||||++......    ........+.+|+.++..+ .||||+.+++++....    .+|+||||+++++|.++
T Consensus       115 ~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~----~~~lv~e~~~g~~L~~~  190 (365)
T 2y7j_A          115 HRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSS----FMFLVFDLMRKGELFDY  190 (365)
T ss_dssp             ETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSS----EEEEEECCCTTCBHHHH
T ss_pred             ECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCC----EEEEEEEeCCCCcHHHH
Confidence            3468999999999754321    1123456788999999999 7999999999987643    68999999999999999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccc
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLS  149 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~  149 (218)
                      +....    .+++..++.++.||+.||.|||+  .||+|+||+|+|||++.++.++|+|||++..       ....||+.
T Consensus       191 l~~~~----~l~~~~~~~i~~qi~~~L~~LH~--~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~  264 (365)
T 2y7j_A          191 LTEKV----ALSEKETRSIMRSLLEAVSFLHA--NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPG  264 (365)
T ss_dssp             HHHHS----SCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGG
T ss_pred             HHhcC----CCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEECCCCCEEEEecCcccccCCCcccccCCCCCC
Confidence            98653    49999999999999999999999  7799999999999999999999999998764       44678999


Q ss_pred             ccccccCC--------CCch----------hhhhhhCCCCCCcchh
Q psy238          150 ATRQTYGR--------PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       150 y~aPE~~~--------~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+|||+..        .++.          +|+|++|..||.....
T Consensus       265 y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~  310 (365)
T 2y7j_A          265 YLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ  310 (365)
T ss_dssp             GCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH
Confidence            99999621        1222          7999999999976543

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.96  E-value=2.3e-28  Score=198.86  Aligned_cols=168  Identities=20%  Similarity=0.261  Sum_probs=133.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..... ........+.+|+.++..++||||+++++++....    .+++||||+++++|.+++....
T Consensus        53 ~~~~~~~vavK~~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  127 (310)
T 2wqm_A           53 CLLDGVPVALKKVQIFDL-MDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN----ELNIVLELADAGDLSRMIKHFK  127 (310)
T ss_dssp             ETTTCCEEEEEEECTTSS-CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT----EEEEEEECCCSCBHHHHHHHHH
T ss_pred             EcCCCceEEEEeeehhhc-cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC----cEEEEEecCCCCCHHHHHHHhc
Confidence            356899999999975322 22456678899999999999999999999998744    6899999999999999998765


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .....++...++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+++.|+||
T Consensus       128 ~~~~~~~~~~~~~i~~qi~~~l~~LH~--~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  205 (310)
T 2wqm_A          128 KQKRLIPERTVWKYFVQLCSALEHMHS--RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSP  205 (310)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTSCEEECCC------------------CCSSCCH
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHhh--CCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeCh
Confidence            445669999999999999999999999  7799999999999999999999999998764        234689999999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcch
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+.  ..++.          +++|++|..||.+..
T Consensus       206 E~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  240 (310)
T 2wqm_A          206 ERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK  240 (310)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---
T ss_pred             HHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            973  23333          699999999997643

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.96  E-value=6.4e-29  Score=198.05  Aligned_cols=161  Identities=19%  Similarity=0.267  Sum_probs=133.5

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||||++.....     ....+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....   
T Consensus        31 ~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~---   98 (268)
T 3sxs_A           31 GQYDVAVKMIKEGSM-----SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEY----PIYIVTEYISNGCLLNYLRSHG---   98 (268)
T ss_dssp             TTEEEEEEEECBTTB-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SEEEEEECCTTCBHHHHHHHHG---
T ss_pred             CceeEEEEEeccCCC-----cHHHHHHHHHHHHhCCCCCEeeEEEEEccCC----ceEEEEEccCCCcHHHHHHHcC---
Confidence            567899999974321     2246889999999999999999999986644    5899999999999999998754   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..         ....+|+.|+|||+
T Consensus        99 ~~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  176 (268)
T 3sxs_A           99 KGLEPSQLLEMCYDVCEGMAFLES--HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEV  176 (268)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHH--TTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHH
Confidence            348999999999999999999999  7799999999999999999999999998864         33455678999997


Q ss_pred             C--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 G--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 ~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      .  ..++.          ++++++ |..||......+
T Consensus       177 ~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~  213 (268)
T 3sxs_A          177 FHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSE  213 (268)
T ss_dssp             HHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHH
T ss_pred             HhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHH
Confidence            2  22222          689998 999997665543

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.96  E-value=9.9e-29  Score=200.62  Aligned_cols=167  Identities=16%  Similarity=0.187  Sum_probs=138.8

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||++..............+.+|+.++..++||||+++++++.+..    .+++||+|+++++|.+++..... .
T Consensus        53 ~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~-~  127 (307)
T 2nru_A           53 NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGD----DLCLVYVYMPNGSLLDRLSCLDG-T  127 (307)
T ss_dssp             SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHTGGG-C
T ss_pred             CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCC----ceEEEEEecCCCcHHHHHHhccC-C
Confidence            678999999975432233455678899999999999999999999987644    58999999999999999986542 2


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQT  154 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE  154 (218)
                      .++++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..          ....||+.|+|||
T Consensus       128 ~~~~~~~~~~i~~~i~~~l~~lH~--~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE  205 (307)
T 2nru_A          128 PPLSWHMRCKIAQGAANGINFLHE--NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPE  205 (307)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChH
Confidence            459999999999999999999999  7799999999999999999999999998764          2346899999999


Q ss_pred             cCC-CCch----------hhhhhhCCCCCCcchhh
Q psy238          155 YGR-PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       155 ~~~-~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +.. .++.          ++++++|..||......
T Consensus       206 ~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~  240 (307)
T 2nru_A          206 ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREP  240 (307)
T ss_dssp             HHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSS
T ss_pred             HhcCCCCccchhHHHHHHHHHHHHCCCCcccCcch
Confidence            732 1222          69999999999865543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.1e-29  Score=211.13  Aligned_cols=165  Identities=16%  Similarity=0.222  Sum_probs=135.1

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|..||||++..............+.+|+.+|..+ +||||+++++++....    .+++||||+++++|.+++....
T Consensus        79 ~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  154 (355)
T 1vzo_A           79 HDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET----KLHLILDYINGGELFTHLSQRE  154 (355)
T ss_dssp             TTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT----EEEEEECCCCSCBHHHHHHHHS
T ss_pred             CCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc----eEEEEeecCCCCCHHHHHHHcC
Confidence            4689999999997533222222334567789999999 7999999999987654    6899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....||+.|+|
T Consensus       155 ----~~~~~~~~~~~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~a  228 (355)
T 1vzo_A          155 ----RFTEHEVQIYVGEIVLALEHLHK--LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMA  228 (355)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccC
Confidence                49999999999999999999999  7799999999999999999999999998864         23478999999


Q ss_pred             cccCC----CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR----PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~----~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+..    .++.          +|+|++|..||.....
T Consensus       229 PE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~  267 (355)
T 1vzo_A          229 PDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGE  267 (355)
T ss_dssp             HHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTS
T ss_pred             hhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCc
Confidence            99733    1222          6999999999975443

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.96  E-value=1.4e-28  Score=204.78  Aligned_cols=168  Identities=16%  Similarity=0.180  Sum_probs=139.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++...   ........+.+|+.++..++||||+++++++.... .....+|+||+|+. ++|.+++...
T Consensus        48 ~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L~~~l~~~  123 (364)
T 3qyz_A           48 DNLNKVRVAIKKISPF---EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDLYKLLKTQ  123 (364)
T ss_dssp             ETTTTEEEEEEEECCT---TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEHHHHHHHC
T ss_pred             ECCCCeEEEEEEeccc---cCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcccC-cCHHHHHHhC
Confidence            4578999999999742   23456678899999999999999999999987643 23346899999996 6999998753


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~  149 (218)
                           .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..           ....||+.
T Consensus       124 -----~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~  196 (364)
T 3qyz_A          124 -----HLSNDHICYFLYQILRGLKYIHS--ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRW  196 (364)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGG
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccC
Confidence                 49999999999999999999999  7799999999999999999999999999864           23478999


Q ss_pred             cccccc---CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          150 ATRQTY---GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       150 y~aPE~---~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+|||+   +..++.          +++|++|..||.+....+.
T Consensus       197 y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~  240 (364)
T 3qyz_A          197 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ  240 (364)
T ss_dssp             GCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGH
T ss_pred             CCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHH
Confidence            999996   222333          6999999999987765554

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.96  E-value=8.9e-29  Score=211.70  Aligned_cols=163  Identities=18%  Similarity=0.256  Sum_probs=135.5

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||++....      ..+.+.+|+.+|..++||||+++++++....   ..+|+||||+++++|.+++.....  
T Consensus       215 ~~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~---~~~~iv~e~~~~g~L~~~l~~~~~--  283 (450)
T 1k9a_A          215 RGNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK---GGLYIVTEYMAKGSLVDYLRSRGR--  283 (450)
T ss_dssp             TTEEEEEEEESSCT------TSHHHHHHHHHHHTCCCTTBCCEEEEEECTT---SCEEEEEECCTTCBHHHHHHHHCT--
T ss_pred             cCCeEEEEEeCCch------HHHHHHHHHHHHHhccCCCEEEEEEEEEcCC---CceEEEEEecCCCcHHHHHHhcCC--
Confidence            57899999997431      3457889999999999999999999987643   258999999999999999987642  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCccccccccc--CC
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTY--GR  157 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~--~~  157 (218)
                      ..++...++.++.||+.||.|||+  ++|+||||+|+|||++.++.++|+|||++..     ....++..|+|||+  +.
T Consensus       284 ~~~~~~~~~~~~~qi~~~l~~LH~--~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~  361 (450)
T 1k9a_A          284 SVLGGDCLLKFSLDVCEAMEYLEG--NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK  361 (450)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHHHHSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCC
Confidence            347999999999999999999999  7799999999999999999999999999865     33466889999997  33


Q ss_pred             CCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          158 PISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       158 ~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      .++.          +++|+| |..||......+.
T Consensus       362 ~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~  395 (450)
T 1k9a_A          362 KFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV  395 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            4443          689998 9999987655443

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.96  E-value=5e-29  Score=203.16  Aligned_cols=161  Identities=16%  Similarity=0.181  Sum_probs=132.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++....    ......+.+|+.++..+ .||||+++++++.+..    .+|+||||+++++|.+++...
T Consensus        34 ~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~  105 (316)
T 2ac3_A           34 NLITSQEYAVKIIEKQP----GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEED----RFYLVFEKMRGGSILSHIHKR  105 (316)
T ss_dssp             CSSSCCEEEEEEEECCS----SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT----EEEEEEECCTTCBHHHHHHHH
T ss_pred             EcCCCcEEEEEEEeeCc----chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC----EEEEEEEcCCCCcHHHHHhcc
Confidence            56789999999997432    22345788999999885 7999999999998754    699999999999999999875


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc---EEEeecCcccc---------------c
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL---VKIGCDTYTHT---------------I  142 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~---~ki~dfg~~~~---------------~  142 (218)
                      .    .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.   ++|+|||++..               .
T Consensus       106 ~----~~~~~~~~~i~~qi~~~l~~lH~--~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  179 (316)
T 2ac3_A          106 R----HFNELEASVVVQDVASALDFLHN--KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELL  179 (316)
T ss_dssp             S----SCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-----------------
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHh--CCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccc
Confidence            3    49999999999999999999999  77999999999999988765   99999998764               1


Q ss_pred             cCCCcccccccccCCC-------Cch----------hhhhhhCCCCCCcch
Q psy238          143 ENKKYLSATRQTYGRP-------ISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       143 ~~~~t~~y~aPE~~~~-------~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ...||+.|+|||+...       ++.          +|+|++|..||.+..
T Consensus       180 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~  230 (316)
T 2ac3_A          180 TPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRC  230 (316)
T ss_dssp             --CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCC
T ss_pred             cccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccc
Confidence            3458999999997321       111          799999999997654

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.96  E-value=1.2e-28  Score=200.02  Aligned_cols=163  Identities=17%  Similarity=0.191  Sum_probs=134.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++....    ......+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++....
T Consensus        30 ~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  101 (304)
T 2jam_A           30 QRLTGKLFALKCIKKSP----AFRDSSLENEIAVLKKIKHENIVTLEDIYESTT----HYYLVMQLVSGGELFDRILERG  101 (304)
T ss_dssp             ETTTCCEEEEEEEECC----------HHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHHHS
T ss_pred             ECCCCCEEEEEEEeccc----ccchHHHHHHHHHHHhCCCCCeeehhhhcccCC----EEEEEEEcCCCccHHHHHHHcC
Confidence            35689999999998431    223456889999999999999999999987643    6899999999999999997653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE---ecCCcEEEeecCcccc------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI---QHNGLVKIGCDTYTHT------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl---~~~~~~ki~dfg~~~~------~~~~~t~~y~a  152 (218)
                          .+++..++.++.|++.||.|||+  .+|+|+||+|+|||+   +.++.++|+|||++..      ....+|+.|+|
T Consensus       102 ----~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~a  175 (304)
T 2jam_A          102 ----VYTEKDASLVIQQVLSAVKYLHE--NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVA  175 (304)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccC
Confidence                48999999999999999999999  779999999999999   7789999999998865      23458999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+..  +++.          ++++++|..||......
T Consensus       176 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  213 (304)
T 2jam_A          176 PEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES  213 (304)
T ss_dssp             TTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             hHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH
Confidence            99733  3333          69999999999776543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.96  E-value=4.5e-29  Score=199.94  Aligned_cols=165  Identities=19%  Similarity=0.276  Sum_probs=123.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        32 ~~~~~~~vavK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  106 (278)
T 3cok_A           32 SIHTGLEVAIKMIDKKAMY-KAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSN----YVYLVLEMCHNGEMNRYLKNRV  106 (278)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSS----EEEEEEECCTTEEHHHHHHTCS
T ss_pred             EccCCceEEEEEeehhhhh-hhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCC----eEEEEEecCCCCcHHHHHhhcc
Confidence            4568999999999743111 1122467889999999999999999999997643    6899999999999999998642


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+|+.|+||
T Consensus       107 ---~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  181 (278)
T 3cok_A          107 ---KPFSENEARHFMHQIITGMLYLHS--HGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISP  181 (278)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECSSCCGGGEEECTTCCEEECCCTTCEECC------------------
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCc
Confidence               458999999999999999999999  7799999999999999999999999998865        245689999999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..  .++.          ++++++|..||....
T Consensus       182 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  216 (278)
T 3cok_A          182 EIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDT  216 (278)
T ss_dssp             ----------CTHHHHHHHHHHHHHHSSCSSCCCS
T ss_pred             chhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChh
Confidence            9732  2222          699999999997654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.96  E-value=5.6e-29  Score=213.12  Aligned_cols=161  Identities=22%  Similarity=0.249  Sum_probs=134.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||||++....     ...+.+.+|+.+|+.++||||+++++++...     .+|+||||+++|+|.+++.....  
T Consensus       211 ~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~-----~~~lv~e~~~~g~L~~~l~~~~~--  278 (454)
T 1qcf_A          211 KHTKVAVKTMKPGS-----MSVEAFLAEANVMKTLQHDKLVKLHAVVTKE-----PIYIITEFMAKGSLLDFLKSDEG--  278 (454)
T ss_dssp             TTEEEEEEEECTTS-----BCHHHHHHHHHHHTTCCCTTBCCEEEEECSS-----SCEEEECCCTTCBHHHHHHSHHH--
T ss_pred             CccEEEEEEecCCC-----ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCC-----ccEEEEeecCCCcHHHHHHhccC--
Confidence            46789999997432     1346789999999999999999999998632     48999999999999999986532  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....++..|+|||+
T Consensus       279 ~~~~~~~~~~~~~qi~~~l~~LH~--~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~  356 (454)
T 1qcf_A          279 SKQPLPKLIDFSAQIAEGMAFIEQ--RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEA  356 (454)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHH--TTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHH
Confidence            348899999999999999999999  7799999999999999999999999999875         23445778999997


Q ss_pred             --CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 --GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                        ...++.          +++|++ |+.||.+....+
T Consensus       357 ~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~  393 (454)
T 1qcf_A          357 INFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE  393 (454)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred             hccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH
Confidence              233333          689999 999998765544

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.96  E-value=7e-29  Score=203.97  Aligned_cols=165  Identities=18%  Similarity=0.251  Sum_probs=129.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++...  .........+.+|+.+++.++||||+++++++.+..    .+|+||||++ ++|.+++....
T Consensus        55 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~L~~~~~~~~  127 (329)
T 3gbz_A           55 DTVTNETVAIKRIRLE--HEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNH----RLHLIFEYAE-NDLKKYMDKNP  127 (329)
T ss_dssp             ETTTTEEEEEEECCCC--C--------CHHHHHHGGGCCCTTBCCEEEEEEETT----EEEEEEECCS-EEHHHHHHHCT
T ss_pred             ECCCCceEEEEEEccc--ccccccchhHHHHHHHHHHcCCCCcceEEEEEecCC----EEEEEEecCC-CCHHHHHhhcC
Confidence            4678999999999754  222344567789999999999999999999998754    6999999997 59999998653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe-----cCCcEEEeecCcccc--------ccCCCcc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ-----HNGLVKIGCDTYTHT--------IENKKYL  148 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~-----~~~~~ki~dfg~~~~--------~~~~~t~  148 (218)
                          .+++..++.++.||+.||.|||+  .+|+||||+|+|||++     .++.++|+|||++..        ....+|+
T Consensus       128 ----~~~~~~~~~i~~ql~~~l~~LH~--~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~  201 (329)
T 3gbz_A          128 ----DVSMRVIKSFLYQLINGVNFCHS--RRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITL  201 (329)
T ss_dssp             ----TCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCc
Confidence                49999999999999999999999  7799999999999994     445699999998864        3456799


Q ss_pred             cccccccCC---CCch----------hhhhhhCCCCCCcchhhh
Q psy238          149 SATRQTYGR---PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       149 ~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      .|+|||+..   .++.          +++|++|..||......+
T Consensus       202 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~  245 (329)
T 3gbz_A          202 WYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID  245 (329)
T ss_dssp             TTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             cccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH
Confidence            999999732   2333          699999999998765544

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.96  E-value=7.5e-29  Score=201.68  Aligned_cols=174  Identities=19%  Similarity=0.250  Sum_probs=135.6

Q ss_pred             CCCCCcEEEEEEeecccccc-cHHHHHHHHHHHHHhhcC---CCCcccceeeeeecCCCC-CCeEEEEEeccCCCCHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKN-FKAQEEKIQQVFENLTQL---EHPNIVKFHRYWTDTHND-KPRVIFITEYMSSGSLKQF   76 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~-~~~~~~~~~~ei~~l~~l---~hp~iv~l~~~~~~~~~~-~~~~~lv~e~~~~~sL~~~   76 (218)
                      |..+|..||||++....... .......+.+|+.++..+   .||||+++++++...... ...+++||||+. ++|.++
T Consensus        30 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~  108 (308)
T 3g33_A           30 DPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTY  108 (308)
T ss_dssp             CTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCC-CBHHHH
T ss_pred             ECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhh-cCHHHH
Confidence            56789999999997532111 111123445566665555   599999999998775432 235789999996 699999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccc
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLS  149 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~  149 (218)
                      +.....  ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....+|+.
T Consensus       109 ~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~--~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~  184 (308)
T 3g33_A          109 LDKAPP--PGLPAETIKDLMRQFLRGLDFLHA--NCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLW  184 (308)
T ss_dssp             HHTCCT--TCSCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCCSGGGGCCCS
T ss_pred             HhhccC--CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcccCCcccccc
Confidence            987643  349999999999999999999999  7799999999999999999999999999864       34578999


Q ss_pred             cccccc--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          150 ATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       150 y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+|||+  +..++.          +|+|++|..||.+....+.
T Consensus       185 y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~  227 (308)
T 3g33_A          185 YRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQ  227 (308)
T ss_dssp             SCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHH
T ss_pred             ccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            999997  333333          6999999999987665443

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.96  E-value=1.2e-28  Score=197.94  Aligned_cols=161  Identities=17%  Similarity=0.299  Sum_probs=134.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||||++.....     ....+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....   
T Consensus        47 ~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~---  114 (283)
T 3gen_A           47 GQYDVAIKMIKEGSM-----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR----PIFIITEYMANGCLLNYLREMR---  114 (283)
T ss_dssp             TTEEEEEEEECTTSB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----SEEEEECCCTTCBHHHHHHCGG---
T ss_pred             CCCeEEEEEecCCCC-----CHHHHHHHHHHHhcCCCCCEeeEEEEEecCC----CeEEEEeccCCCcHHHHHHHhc---
Confidence            567899999984321     2256889999999999999999999997644    5899999999999999998743   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..         ....+|+.|+|||+
T Consensus       115 ~~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  192 (283)
T 3gen_A          115 HRFQTQQLLEMCKDVCEAMEYLES--KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEV  192 (283)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH--CCccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHH
Confidence            349999999999999999999999  7799999999999999999999999999864         34556788999997


Q ss_pred             --CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 --GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                        +..++.          ++++++ |..||......+
T Consensus       193 ~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~  229 (283)
T 3gen_A          193 LMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE  229 (283)
T ss_dssp             HHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH
T ss_pred             hccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH
Confidence              333333          688998 999998765543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.96  E-value=9e-29  Score=202.34  Aligned_cols=164  Identities=20%  Similarity=0.301  Sum_probs=136.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...   ........+.+|+.+++.++||||+++++++.+.+  ...+++||||+++++|.+++... 
T Consensus        56 ~~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~-  129 (318)
T 3lxp_A           56 NDGTGEMVAVKALKAD---AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAG--AASLQLVMEYVPLGSLRDYLPRH-  129 (318)
T ss_dssp             C--CCEEEEEEEECTT---CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--TTEEEEEECCCTTCBHHHHGGGS-
T ss_pred             CCCCCcEEEEEEeccc---cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCC--CceEEEEEecccCCcHHHHHhhC-
Confidence            4568999999999843   33456778999999999999999999999998743  34689999999999999999653 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y  150 (218)
                          .+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..           ....+|..|
T Consensus       130 ----~~~~~~~~~i~~~l~~~l~~LH~--~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y  203 (318)
T 3lxp_A          130 ----SIGLAQLLLFAQQICEGMAYLHA--QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFW  203 (318)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGG
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCcee
Confidence                38999999999999999999999  7799999999999999999999999998864           234567789


Q ss_pred             cccccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          151 TRQTYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +|||+.  ..++.          +++|++|..||.....
T Consensus       204 ~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~  242 (318)
T 3lxp_A          204 YAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPT  242 (318)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH
T ss_pred             eChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccch
Confidence            999972  22222          6999999999976543

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.96  E-value=7.4e-29  Score=200.82  Aligned_cols=164  Identities=22%  Similarity=0.293  Sum_probs=133.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....   .......+.+|+.++..++||||+++++++...+  ...+++||||+++++|.+++....
T Consensus        46 ~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~  120 (302)
T 4e5w_A           46 GDNTGEQVAVKSLKPES---GGNHIADLKKEIEILRNLYHENIVKYKGICTEDG--GNGIKLIMEFLPSGSLKEYLPKNK  120 (302)
T ss_dssp             SSSCSEEEEEEEEC--------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----CCEEEEEECCTTCBHHHHHHHHT
T ss_pred             cCccCeEEEEEEecccc---cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCC--CceEEEEEEeCCCCcHHHHHHhcc
Confidence            46789999999997532   1233467889999999999999999999998743  235899999999999999997653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y  150 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..           ....+|..|
T Consensus       121 ---~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  195 (302)
T 4e5w_A          121 ---NKINLKQQLKYAVQICKGMDYLGS--RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFW  195 (302)
T ss_dssp             ---TTCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGG
T ss_pred             ---ccCCHHHHHHHHHHHHHHHHHhhc--CCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccc
Confidence               359999999999999999999999  7799999999999999999999999998864           345677889


Q ss_pred             ccccc--CCCCch----------hhhhhhCCCCCCcc
Q psy238          151 TRQTY--GRPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       151 ~aPE~--~~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      +|||+  +..++.          ++++++|..|+...
T Consensus       196 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  232 (302)
T 4e5w_A          196 YAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP  232 (302)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred             cCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcch
Confidence            99996  222222          69999999987543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.96  E-value=2.6e-28  Score=195.93  Aligned_cols=162  Identities=20%  Similarity=0.242  Sum_probs=134.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|++...   ........+.+|+.++..++||||+++++++.+.     ..|+||+|+++++|.+++....   
T Consensus        39 ~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~v~e~~~~~~L~~~l~~~~---  107 (281)
T 3cc6_A           39 EKINVAVKTCKKD---CTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-----PTWIIMELYPYGELGHYLERNK---  107 (281)
T ss_dssp             CEEEEEEEECCTT---SCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-----SCEEEEECCTTCBHHHHHHHHT---
T ss_pred             CcceEEEEecccc---cCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-----CCEEEEecCCCCCHHHHHHhcc---
Confidence            4557999998743   2345667889999999999999999999998653     3689999999999999998653   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..         ....+++.|+|||+
T Consensus       108 ~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  185 (281)
T 3cc6_A          108 NSLKVLTLVLYSLQICKAMAYLES--INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPES  185 (281)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchh
Confidence            358999999999999999999999  7799999999999999999999999998864         23456788999997


Q ss_pred             --CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 --GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                        +..++.          ++++++ |+.||......+
T Consensus       186 ~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~  222 (281)
T 3cc6_A          186 INFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKD  222 (281)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGG
T ss_pred             hccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHH
Confidence              233333          689998 999997655444

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=4.5e-29  Score=205.84  Aligned_cols=166  Identities=17%  Similarity=0.219  Sum_probs=133.3

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .++..||||++...   ........+.+|+.++..+ .||||+++++++...+    .+++||||+++++|.+++.....
T Consensus        73 ~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~~  145 (344)
T 1rjb_A           73 GVSIQVAVKMLKEK---ADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG----PIYLIFEYCCYGDLLNYLRSKRE  145 (344)
T ss_dssp             SCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHTTTT
T ss_pred             CcceEEEEEecccc---cCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC----ccEEEEecCCCCcHHHHHhhccc
Confidence            46678999999742   2234456789999999999 8999999999997754    48999999999999999987542


Q ss_pred             c-------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--
Q psy238           83 N-------------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--  141 (218)
Q Consensus        83 ~-------------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--  141 (218)
                      .                   ...+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..  
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~  223 (344)
T 1rjb_A          146 KFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF--KSCVHRDLAARNVLVTHGKVVKICDFGLARDIM  223 (344)
T ss_dssp             CC---------------------CCHHHHHHHHHHHHHHHHHHHH--TTEEETTCSGGGEEEETTTEEEECCCGGGSCGG
T ss_pred             cccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCChhhEEEcCCCcEEeCCCccCcccc
Confidence            1                   1237899999999999999999999  7799999999999999999999999999864  


Q ss_pred             --------ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          142 --------IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       142 --------~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                              ....+|+.|+|||+  +..++.          +++|+| |..||.+....
T Consensus       224 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~  281 (344)
T 1rjb_A          224 SDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD  281 (344)
T ss_dssp             GCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS
T ss_pred             cCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcH
Confidence                    23445778999996  333333          688998 99999876543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.96  E-value=3.9e-29  Score=216.32  Aligned_cols=164  Identities=21%  Similarity=0.259  Sum_probs=136.3

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||++....     .....+.+|+.+|..++||||+++++++....    .+|+||||+++++|.+++.....
T Consensus       242 ~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~----~~~lv~E~~~~g~L~~~l~~~~~  312 (495)
T 1opk_A          242 KKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP----PFYIITEFMTYGNLLDYLRECNR  312 (495)
T ss_dssp             GGGTEEEEEEECCSSS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHSCT
T ss_pred             cCCCeEEEEEEecCcc-----cchHHHHHHHHHHHhcCCCCEeeEEEEEecCC----cEEEEEEccCCCCHHHHHHhcCc
Confidence            3568899999997431     12467899999999999999999999997654    48999999999999999987533


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQ  153 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aP  153 (218)
                        ..+++..++.++.||+.||.|||+  ++|+||||+|+|||++.++.++|+|||++..         ....++..|+||
T Consensus       313 --~~~~~~~~~~i~~qi~~~L~~LH~--~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aP  388 (495)
T 1opk_A          313 --QEVSAVVLLYMATQISSAMEYLEK--KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP  388 (495)
T ss_dssp             --TTSCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCH
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCH
Confidence              458999999999999999999999  7799999999999999999999999999865         233456789999


Q ss_pred             ccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          154 TYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      |+.  ..++.          +++|++ |..||.+....+
T Consensus       389 E~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~  427 (495)
T 1opk_A          389 ESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ  427 (495)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG
T ss_pred             hHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH
Confidence            972  22322          689998 999998766544

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=1.5e-28  Score=206.00  Aligned_cols=168  Identities=17%  Similarity=0.253  Sum_probs=135.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC--------------------------
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH--------------------------   55 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~--------------------------   55 (218)
                      |..+|..||||++.....        ...+|+.+|+.++||||++++++|....                          
T Consensus        28 ~~~~~~~vAiK~~~~~~~--------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (383)
T 3eb0_A           28 DIESGKRFALKKVLQDPR--------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNH   99 (383)
T ss_dssp             ETTTCCEEEEEEEECCTT--------SCCHHHHHHTTCCCTTBCCEEEEEEEC---------------------------
T ss_pred             ECCCCCEEEEEEEecCcc--------hHHHHHHHHHHcCCCCccchhheeeecCcccccccccccccccccccccccccc
Confidence            567899999999874311        1236899999999999999999986543                          


Q ss_pred             --------CCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe-
Q psy238           56 --------NDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ-  126 (218)
Q Consensus        56 --------~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~-  126 (218)
                              .+..++++||||++ ++|.+.+.........+++..++.++.||+.||.|||+  .||+||||+|+|||++ 
T Consensus       100 ~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~--~gi~H~Dikp~Nil~~~  176 (383)
T 3eb0_A          100 HKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS--LGICHRDIKPQNLLVNS  176 (383)
T ss_dssp             ----------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT--TTEECSCCCGGGEEEET
T ss_pred             cccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH--CcCccCccCHHHEEEcC
Confidence                    23346889999997 69998888755555679999999999999999999999  7799999999999998 


Q ss_pred             cCCcEEEeecCcccc-------ccCCCccccccccc--CC-CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          127 HNGLVKIGCDTYTHT-------IENKKYLSATRQTY--GR-PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       127 ~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE~--~~-~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      .++.++|+|||++..       ....+|..|+|||+  +. .++.          +++|++|..||.+....+.
T Consensus       177 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~  250 (383)
T 3eb0_A          177 KDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQ  250 (383)
T ss_dssp             TTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             CCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHH
Confidence            689999999999864       44677999999996  22 2333          6999999999987665443

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.96  E-value=2.3e-28  Score=196.03  Aligned_cols=166  Identities=15%  Similarity=0.160  Sum_probs=135.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++....  ........+.+|+.++..+ +||||+++++++.+..    .+++||||+++++|.+++...
T Consensus        32 ~~~~~~~vaiK~~~~~~--~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~  105 (289)
T 1x8b_A           32 KRLDGCIYAIKRSKKPL--AGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDD----HMLIQNEYCNGGSLADAISEN  105 (289)
T ss_dssp             ETTTCCEEEEEEEECCC--TTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETT----EEEEEEECCTTCBHHHHHHHH
T ss_pred             EcCCCceEEEEEecccc--cccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCC----eEEEEEEecCCCcHHHHHHhh
Confidence            45689999999998532  2234556788899999998 9999999999997654    689999999999999999876


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-------------------CcEEEeecCcccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-------------------GLVKIGCDTYTHT  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-------------------~~~ki~dfg~~~~  141 (218)
                      ......+++..++.++.||+.||.|||+  .+|+||||+|+|||++.+                   ..++|+|||.+..
T Consensus       106 ~~~~~~~~~~~~~~i~~qi~~al~~lH~--~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~  183 (289)
T 1x8b_A          106 YRIMSYFKEAELKDLLLQVGRGLRYIHS--MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTR  183 (289)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEE
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHh--CCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccc
Confidence            5444569999999999999999999999  779999999999999844                   4799999998875


Q ss_pred             ----ccCCCcccccccccCC---CCch----------hhhhhhCCCCCCcc
Q psy238          142 ----IENKKYLSATRQTYGR---PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       142 ----~~~~~t~~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~  175 (218)
                          ....+|+.|+|||+..   .++.          ++++++|..++...
T Consensus       184 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~  234 (289)
T 1x8b_A          184 ISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG  234 (289)
T ss_dssp             TTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred             cCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch
Confidence                4567899999999732   2222          68888888776543

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.96  E-value=1.3e-28  Score=196.74  Aligned_cols=164  Identities=16%  Similarity=0.174  Sum_probs=137.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++.....   ......+.+|+.++..++||||+++++++.+..    ..|+||||+++++|.+++... 
T Consensus        28 ~~~~~~~vavK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~-   99 (276)
T 2yex_A           28 NRVTEEAVAVKIVDMKRA---VDCPENIKKEICINKMLNHENVVKFYGHRREGN----IQYLFLEYCSGGELFDRIEPD-   99 (276)
T ss_dssp             ETTTCCEEEEEEEEGGGC---TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT----EEEEEEECCTTEEGGGGSBTT-
T ss_pred             ECCCCcEEEEEEeeeccc---hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCC----EEEEEEEecCCCcHHHHHhhc-
Confidence            356899999999975322   234567889999999999999999999987643    689999999999999988654 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||.+..          ....+++.|+
T Consensus       100 ---~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~  174 (276)
T 2yex_A          100 ---IGMPEPDAQRFFHQLMAGVVYLHG--IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYV  174 (276)
T ss_dssp             ---TBCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGC
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHh--CCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCcc
Confidence               349999999999999999999999  7799999999999999999999999998863          3456899999


Q ss_pred             ccccCC--CC-ch----------hhhhhhCCCCCCcchhh
Q psy238          152 RQTYGR--PI-SG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       152 aPE~~~--~~-~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |||+..  .. +.          ++++++|..||......
T Consensus       175 aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  214 (276)
T 2yex_A          175 APELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS  214 (276)
T ss_dssp             CGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTT
T ss_pred             ChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchH
Confidence            999733  32 22          68999999999876543

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.5e-28  Score=197.92  Aligned_cols=164  Identities=18%  Similarity=0.274  Sum_probs=135.3

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||++...   ........+.+|+.++..++||||+++++++...     .+++||||+++++|.+++.... 
T Consensus        34 ~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~-  104 (287)
T 1u59_A           34 RKKQIDVAIKVLKQG---TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE-----ALMLVMEMAGGGPLHKFLVGKR-  104 (287)
T ss_dssp             --CCEEEEEEEECSS---CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS-----SEEEEEECCTTEEHHHHHTTCT-
T ss_pred             CCCcceEEEEecCCc---cchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCC-----CcEEEEEeCCCCCHHHHHHhCC-
Confidence            346888999999853   2355677899999999999999999999998432     4899999999999999997532 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSAT  151 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~  151 (218)
                        ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..           ....+|+.|+
T Consensus       105 --~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~  180 (287)
T 1u59_A          105 --EEIPVSNVAELLHQVSMGMKYLEE--KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWY  180 (287)
T ss_dssp             --TTSCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGC
T ss_pred             --ccCCHHHHHHHHHHHHHHHHHHHH--CCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeecccccccccccc
Confidence              459999999999999999999999  7799999999999999999999999998864           2234578899


Q ss_pred             ccccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          152 RQTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      |||+.  ..++.          +++|++ |..||......+
T Consensus       181 aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~  221 (287)
T 1u59_A          181 APECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE  221 (287)
T ss_dssp             CHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH
T ss_pred             CHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH
Confidence            99973  22222          689998 999998765543

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.96  E-value=2.1e-28  Score=196.39  Aligned_cols=167  Identities=21%  Similarity=0.293  Sum_probs=136.7

Q ss_pred             CCCCCcEEEEEEeeccccccc--HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNF--KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~--~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||||++........  ......+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++..
T Consensus        26 ~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~  101 (283)
T 3bhy_A           26 QKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKT----DVVLILELVSGGELFDFLAE  101 (283)
T ss_dssp             ETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHH
T ss_pred             EcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCC----eEEEEEeecCCCcHHHHHHh
Confidence            346799999999985432211  113567889999999999999999999997643    68999999999999999976


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC----cEEEeecCcccc-------ccCCCcc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG----LVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~----~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      .    ..+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++    .++|+|||++..       ....+++
T Consensus       102 ~----~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  175 (283)
T 3bhy_A          102 K----ESLTEDEATQFLKQILDGVHYLHS--KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTP  175 (283)
T ss_dssp             H----SSCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCG
T ss_pred             c----CCCCHHHHHHHHHHHHHHHHHHHh--CCccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCc
Confidence            5    349999999999999999999999  7799999999999998876    899999998865       3456899


Q ss_pred             cccccccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          149 SATRQTYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       149 ~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .|+|||+.  ..++.          ++++++|..||......
T Consensus       176 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  217 (283)
T 3bhy_A          176 EFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ  217 (283)
T ss_dssp             GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             CccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH
Confidence            99999973  33332          68999999999876543

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.6e-29  Score=211.62  Aligned_cols=167  Identities=17%  Similarity=0.146  Sum_probs=137.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++.....   ......+.+|+.++..++||||+++++++....  ...+|+||||+++++|.+++....
T Consensus        30 ~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~  104 (396)
T 4eut_A           30 HKKTGDLFAIKVFNNISF---LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT--TRHKVLIMEFCPCGSLYTVLEEPS  104 (396)
T ss_dssp             ETTTCCEEEEEEECGGGG---GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT--TCCEEEEECCCTTEEHHHHTTSGG
T ss_pred             ECCCCcEEEEEEeccccc---cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCC--CCeeEEEEecCCCCCHHHHHHhhh
Confidence            456899999999974322   223456789999999999999999999987643  346899999999999999998754


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE----ecCCcEEEeecCcccc-------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI----QHNGLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl----~~~~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                      .. ..+++..++.++.||+.||.|||+  .+|+||||+|+|||+    +.++.++|+|||++..       ....||+.|
T Consensus       105 ~~-~~l~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y  181 (396)
T 4eut_A          105 NA-YGLPESEFLIVLRDVVGGMNHLRE--NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEY  181 (396)
T ss_dssp             GT-TCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTT
T ss_pred             cc-cCCCHHHHHHHHHHHHHHHHHHHH--CCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccc
Confidence            32 349999999999999999999999  779999999999999    6778899999999865       356789999


Q ss_pred             cccccCC----------CCch----------hhhhhhCCCCCCcch
Q psy238          151 TRQTYGR----------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       151 ~aPE~~~----------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +|||+..          .++.          +|+|++|..||....
T Consensus       182 ~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~  227 (396)
T 4eut_A          182 LHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE  227 (396)
T ss_dssp             CCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTT
T ss_pred             cCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            9999732          1111          699999999997543

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.96  E-value=4.2e-28  Score=197.53  Aligned_cols=172  Identities=15%  Similarity=0.259  Sum_probs=132.6

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCC-CCeEEEEEeccCCCCHHHHHHhhc-
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND-KPRVIFITEYMSSGSLKQFLKRTK-   81 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~-   81 (218)
                      .++..||||++...  .........+.+|+.++..++||||+++++++...... ....++||+|+++++|.+++.... 
T Consensus        60 ~~~~~vavK~~~~~--~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~  137 (313)
T 3brb_A           60 GTSLKVAVKTMKLD--NSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRL  137 (313)
T ss_dssp             SCEEEEEEEEC-----CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTB
T ss_pred             CceeEEEEEEEecc--ccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhh
Confidence            35678999999754  22345567889999999999999999999998764421 235699999999999999996532 


Q ss_pred             -ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccc
Q psy238           82 -RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSA  150 (218)
Q Consensus        82 -~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y  150 (218)
                       .....+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....+++.|
T Consensus       138 ~~~~~~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y  215 (313)
T 3brb_A          138 ETGPKHIPLQTLLKFMVDIALGMEYLSN--RNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKW  215 (313)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHHHHHHHHT--TTCCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGG
T ss_pred             hcCCccCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccc
Confidence             123459999999999999999999999  7799999999999999999999999998864          234567889


Q ss_pred             ccccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          151 TRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       151 ~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      +|||+  +..++.          +++|++ |..||......+
T Consensus       216 ~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~  257 (313)
T 3brb_A          216 IAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE  257 (313)
T ss_dssp             SCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG
T ss_pred             cCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH
Confidence            99997  333333          689999 889997765544

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.96  E-value=1.1e-28  Score=202.75  Aligned_cols=160  Identities=16%  Similarity=0.252  Sum_probs=128.8

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      .||+|.+...   ........+.+|+.++..++||||+++++++....     .++|++++.+++|.+++....   ..+
T Consensus        46 ~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----~~~v~e~~~~g~L~~~l~~~~---~~~  114 (327)
T 3poz_A           46 PVAIKELREA---TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-----VQLITQLMPFGCLLDYVREHK---DNI  114 (327)
T ss_dssp             EEEEEEC----------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-----EEEEEECCTTCBHHHHHHHST---TSC
T ss_pred             EEEEeecccc---cCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-----eEEEEEecCCCcHHHHHHhcC---CCC
Confidence            3588877532   22344567899999999999999999999998643     789999999999999998753   359


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc--
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY--  155 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~--  155 (218)
                      ++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..          ....+|+.|+|||+  
T Consensus       115 ~~~~~~~~~~qi~~~l~~LH~--~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~  192 (327)
T 3poz_A          115 GSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL  192 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhh--CCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhc
Confidence            999999999999999999999  7799999999999999999999999998864          23455789999997  


Q ss_pred             CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          156 GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       156 ~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      +..++.          ++++++ |..||.+....+.
T Consensus       193 ~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~  228 (327)
T 3poz_A          193 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI  228 (327)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH
T ss_pred             cCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHH
Confidence            333333          689999 9999987665543

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.96  E-value=1.8e-28  Score=196.09  Aligned_cols=165  Identities=18%  Similarity=0.230  Sum_probs=130.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...... .......+.+|+.++..++||||+++++++....    .+++||||+++++|.+++....
T Consensus        32 ~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  106 (276)
T 2h6d_A           32 HQLTGHKVAVKILNRQKIR-SLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPT----DFFMVMEYVSGGELFDYICKHG  106 (276)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHHHC
T ss_pred             ECCCCceEEEEEecccccc-chhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC----eEEEEEeccCCCcHHHHHhccC
Confidence            3568999999999743111 1223457889999999999999999999987643    6899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQT  154 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE  154 (218)
                          .+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..       ....+++.|+|||
T Consensus       107 ----~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE  180 (276)
T 2h6d_A          107 ----RVEEMEARRLFQQILSAVDYCHR--HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPE  180 (276)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--HCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------------CCTG
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCCccCCCChhhEEECCCCCEEEeecccccccCCCcceecccCCccccCHH
Confidence                48999999999999999999999  7799999999999999999999999998875       3456789999999


Q ss_pred             cCC--CC-ch----------hhhhhhCCCCCCcchh
Q psy238          155 YGR--PI-SG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       155 ~~~--~~-~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +..  .. +.          ++++++|..||.....
T Consensus       181 ~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~  216 (276)
T 2h6d_A          181 VISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV  216 (276)
T ss_dssp             GGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             HHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH
Confidence            733  22 22          6999999999976543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.96  E-value=4.3e-29  Score=211.85  Aligned_cols=165  Identities=18%  Similarity=0.196  Sum_probs=128.7

Q ss_pred             CCCCCcEEEEEEeecccccc----cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKN----FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~----~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +..+|..||||++.......    .......+.+|+.+|..++||||+++++++...     .+|+||||+++++|.+++
T Consensus       156 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~-----~~~lv~e~~~~g~L~~~l  230 (419)
T 3i6u_A          156 ERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-----DYYIVLELMEGGELFDKV  230 (419)
T ss_dssp             ETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS-----EEEEEEECCTTCBGGGGT
T ss_pred             ECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC-----ceEEEEEcCCCCcHHHHH
Confidence            46789999999998542211    112233578999999999999999999998542     489999999999999888


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC---CcEEEeecCcccc-------ccCCCc
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN---GLVKIGCDTYTHT-------IENKKY  147 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~---~~~ki~dfg~~~~-------~~~~~t  147 (218)
                      ...    ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.+   +.++|+|||++..       ....||
T Consensus       231 ~~~----~~~~~~~~~~i~~qi~~~l~~LH~--~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt  304 (419)
T 3i6u_A          231 VGN----KRLKEATCKLYFYQMLLAVQYLHE--NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGT  304 (419)
T ss_dssp             SSS----CCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------
T ss_pred             hcc----CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCCChHhEEEecCCCcceEEEeecccceecCCCccccccCCC
Confidence            654    459999999999999999999999  779999999999999654   4699999999865       356789


Q ss_pred             ccccccccCC-----CCch----------hhhhhhCCCCCCcchh
Q psy238          148 LSATRQTYGR-----PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       148 ~~y~aPE~~~-----~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +.|+|||+..     .++.          +|+|++|..||.....
T Consensus       305 ~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~  349 (419)
T 3i6u_A          305 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT  349 (419)
T ss_dssp             CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSS
T ss_pred             CCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcc
Confidence            9999999742     2322          6999999999976543

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.96  E-value=8.4e-29  Score=197.55  Aligned_cols=164  Identities=21%  Similarity=0.322  Sum_probs=126.8

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||++..............+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++..     
T Consensus        29 ~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~-----   99 (271)
T 3dtc_A           29 IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEP----NLCLVMEFARGGPLNRVLSG-----   99 (271)
T ss_dssp             TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC------CEEEEECCTTEEHHHHHTS-----
T ss_pred             cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC----ceEEEEEcCCCCCHHHHhhc-----
Confidence            578999999975433332344567889999999999999999999997644    58999999999999999853     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCC---cccCCCCCCcEEEec--------CCcEEEeecCcccc------ccCCCc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPP---IIHGNLTCDTIFIQH--------NGLVKIGCDTYTHT------IENKKY  147 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~---iiH~dlkp~NiLl~~--------~~~~ki~dfg~~~~------~~~~~t  147 (218)
                      ..+++..++.++.|++.||.|||+  .+   |+|+||+|+|||++.        ++.++|+|||++..      ....+|
T Consensus       100 ~~~~~~~~~~i~~~l~~~l~~lH~--~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  177 (271)
T 3dtc_A          100 KRIPPDILVNWAVQIARGMNYLHD--EAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGA  177 (271)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH--SSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------------CC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCCCCc
Confidence            359999999999999999999999  77   889999999999986        68899999999864      456789


Q ss_pred             cccccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          148 LSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       148 ~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +.|+|||+  +..++.          ++++++|..||.......
T Consensus       178 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~  221 (271)
T 3dtc_A          178 YAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA  221 (271)
T ss_dssp             GGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHH
T ss_pred             cceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            99999997  333333          699999999998765443

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.96  E-value=8.4e-29  Score=199.20  Aligned_cols=165  Identities=21%  Similarity=0.245  Sum_probs=137.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...     ......+.+|+.+++.++||||+++++++.+..    .+|+||||+++++|.+++....
T Consensus        34 ~~~~~~~vaiK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~L~~~~~~~~  104 (288)
T 3kfa_A           34 WKKYSLTVAVKTLKED-----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP----PFYIITEFMTYGNLLDYLRECN  104 (288)
T ss_dssp             EGGGTEEEEEEEECSC-----STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SEEEEEECCTTEEHHHHHHHCC
T ss_pred             ecCCCEEEEEEecCcC-----HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC----CEEEEEEcCCCCcHHHHHHhcc
Confidence            3457889999999742     234567889999999999999999999987644    5899999999999999998754


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                      .  ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..         ....+|+.|+|
T Consensus       105 ~--~~~~~~~~~~i~~~i~~~l~~lH~--~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~a  180 (288)
T 3kfa_A          105 R--QEVSAVVLLYMATQISSAMEYLEK--KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA  180 (288)
T ss_dssp             T--TTSCHHHHHHHHHHHHHHHHHHHH--HTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCC
T ss_pred             c--CCccHhHHHHHHHHHHHHHHHHHH--CCccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCC
Confidence            3  459999999999999999999999  7799999999999999999999999998865         23345678999


Q ss_pred             ccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ||+  +..++.          ++++++ |..||.......
T Consensus       181 PE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~  220 (288)
T 3kfa_A          181 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ  220 (288)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG
T ss_pred             hhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence            997  233333          688999 999998765443

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.96  E-value=1.6e-28  Score=198.24  Aligned_cols=164  Identities=14%  Similarity=0.168  Sum_probs=133.0

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+|..||||++...  .........+.+|+.++..++||||+++++++..     ..+++||||+++++|.+++...  
T Consensus        41 ~~~~~~vavK~~~~~--~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~lv~e~~~~~~L~~~l~~~--  111 (291)
T 1xbb_A           41 KKVVKTVAVKILKNE--ANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-----ESWMLVMEMAELGPLNKYLQQN--  111 (291)
T ss_dssp             SSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-----SSEEEEEECCTTEEHHHHHHHC--
T ss_pred             CCceeeEEEEeeccc--ccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECC-----CCcEEEEEeCCCCCHHHHHHhC--
Confidence            456789999999753  2223456788999999999999999999999843     2489999999999999999864  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSAT  151 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~  151 (218)
                        ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..           ....+++.|+
T Consensus       112 --~~~~~~~~~~i~~qi~~~l~~LH~--~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~  187 (291)
T 1xbb_A          112 --RHVKDKNIIELVHQVSMGMKYLEE--SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY  187 (291)
T ss_dssp             --TTCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGC
T ss_pred             --cCCCHHHHHHHHHHHHHHHHHHHh--CCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceee
Confidence              349999999999999999999999  7799999999999999999999999998864           2234568899


Q ss_pred             ccccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          152 RQTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      |||+.  ..++.          +++|++ |..||.+....+
T Consensus       188 aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~  228 (291)
T 1xbb_A          188 APECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE  228 (291)
T ss_dssp             CHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH
T ss_pred             ChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence            99972  22222          689999 999998765543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.96  E-value=3.1e-28  Score=198.64  Aligned_cols=162  Identities=16%  Similarity=0.135  Sum_probs=129.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...  ............|+..+..+ .||||++++++|.+..    .+|+||||+ +++|.+++...
T Consensus        78 ~~~~~~~vavK~~~~~--~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~----~~~lv~e~~-~~~L~~~~~~~  150 (311)
T 3p1a_A           78 SKEDGRLYAVKRSMSP--FRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGG----ILYLQTELC-GPSLQQHCEAW  150 (311)
T ss_dssp             ETTTSCEEEEEEESSS--CCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECC-CCBHHHHHHHH
T ss_pred             ECCCCeEEEEEEeccc--ccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCC----EEEEEEecc-CCCHHHHHHhc
Confidence            4568999999988643  22233444555566555555 9999999999997643    699999999 67999998876


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQ  153 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aP  153 (218)
                      .   ..+++..++.++.|++.||.|||+  .+|+||||||+|||++.++.++|+|||++..       ....||+.|+||
T Consensus       151 ~---~~l~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aP  225 (311)
T 3p1a_A          151 G---ASLPEAQVWGYLRDTLLALAHLHS--QGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAP  225 (311)
T ss_dssp             C---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCGGGCCG
T ss_pred             C---CCCCHHHHHHHHHHHHHHHHHHHH--CCEecCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCccccCH
Confidence            4   459999999999999999999999  7799999999999999999999999998764       345689999999


Q ss_pred             ccCC-CCch----------hhhhhhCCCCCCcc
Q psy238          154 TYGR-PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~~-~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+.. .++.          +++|++|..|+...
T Consensus       226 E~~~~~~~~~~DiwslG~il~el~~g~~~~~~~  258 (311)
T 3p1a_A          226 ELLQGSYGTAADVFSLGLTILEVACNMELPHGG  258 (311)
T ss_dssp             GGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSH
T ss_pred             hHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            9733 2332          69999997777543

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.96  E-value=3.7e-29  Score=206.36  Aligned_cols=164  Identities=22%  Similarity=0.234  Sum_probs=134.6

Q ss_pred             CCCCCcEEEEEEeecccccc----cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCC-CHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKN----FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSG-SLKQF   76 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~----~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~-sL~~~   76 (218)
                      |..+|..||||++.......    .......+.+|+.++..++||||+++++++.+..    .+++||+|+.++ +|.++
T Consensus        45 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~----~~~lv~e~~~~g~~l~~~  120 (335)
T 3dls_A           45 DKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG----FFQLVMEKHGSGLDLFAF  120 (335)
T ss_dssp             ETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEEECCTTSCBHHHH
T ss_pred             ECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC----EEEEEEEeCCCCccHHHH
Confidence            46789999999998542111    0112335677999999999999999999997644    689999998666 99999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccc
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLS  149 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~  149 (218)
                      +...    ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....||+.
T Consensus       121 ~~~~----~~l~~~~~~~i~~qi~~~L~~LH~--~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~  194 (335)
T 3dls_A          121 IDRH----PRLDEPLASYIFRQLVSAVGYLRL--KDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIE  194 (335)
T ss_dssp             HHTC----CCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEECSCGG
T ss_pred             HHhc----CCCCHHHHHHHHHHHHHHHHHHHh--CCeEEeccCHHHEEEcCCCcEEEeecccceECCCCCceeccCCCcc
Confidence            9865    349999999999999999999999  7799999999999999999999999999865       34468999


Q ss_pred             cccccc--CCCC-ch----------hhhhhhCCCCCCcc
Q psy238          150 ATRQTY--GRPI-SG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~--~~~~-~~----------~~ei~tg~~p~~~~  175 (218)
                      |+|||+  +..+ +.          +|+|++|..||...
T Consensus       195 y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  233 (335)
T 3dls_A          195 YCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCEL  233 (335)
T ss_dssp             GCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSG
T ss_pred             ccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhH
Confidence            999997  3333 22          69999999999754

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=4.5e-29  Score=205.75  Aligned_cols=172  Identities=14%  Similarity=0.118  Sum_probs=134.7

Q ss_pred             CCCCCcEEEEEEeeccccc-ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERK-NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~-~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||+|++...... ........+.+|+.++..++||||+++++++.+..    .+|+||||+++++|.+++...
T Consensus        47 ~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~----~~~lv~e~~~gg~L~~~l~~~  122 (345)
T 3hko_A           47 ENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ----YICLVMELCHGGHLLDKLNVF  122 (345)
T ss_dssp             ETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHEEEE
T ss_pred             ECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC----eEEEEEeCCCCCcHHHHHHHh
Confidence            4578899999999743211 12345568899999999999999999999997643    699999999999999998532


Q ss_pred             ccc------------------------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEE
Q psy238           81 KRN------------------------------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIF  124 (218)
Q Consensus        81 ~~~------------------------------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiL  124 (218)
                      ...                                    ...+++..++.++.||+.||.|||+  .+|+||||+|+|||
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~--~~ivH~Dlkp~NIl  200 (345)
T 3hko_A          123 IDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHN--QGICHRDIKPENFL  200 (345)
T ss_dssp             EETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEE
T ss_pred             hcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH--CCccccCCChhhEE
Confidence            110                                    1124677889999999999999999  77999999999999


Q ss_pred             EecCC--cEEEeecCcccc------------ccCCCcccccccccC----CCCch----------hhhhhhCCCCCCcch
Q psy238          125 IQHNG--LVKIGCDTYTHT------------IENKKYLSATRQTYG----RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       125 l~~~~--~~ki~dfg~~~~------------~~~~~t~~y~aPE~~----~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ++.++  .++|+|||++..            ....||+.|+|||+.    ..++.          +++|++|..||.+..
T Consensus       201 l~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  280 (345)
T 3hko_A          201 FSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVN  280 (345)
T ss_dssp             ESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             EecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            98776  899999998863            356789999999973    23333          689999999998766


Q ss_pred             hhh
Q psy238          177 KEK  179 (218)
Q Consensus       177 ~ee  179 (218)
                      ..+
T Consensus       281 ~~~  283 (345)
T 3hko_A          281 DAD  283 (345)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            544

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=217.55  Aligned_cols=163  Identities=18%  Similarity=0.287  Sum_probs=133.6

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..||||++....   .......+.+|+.+|..++||||+++++++...     .+++||||+++++|.+++....  
T Consensus       361 ~~~~~vAvK~~~~~~---~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~-----~~~lv~E~~~~g~L~~~l~~~~--  430 (613)
T 2ozo_A          361 KKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE-----ALMLVMEMAGGGPLHKFLVGKR--  430 (613)
T ss_dssp             SCEEEEEEEECCCCC---SSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESS-----SEEEEEECCTTCBHHHHHTTCT--
T ss_pred             CCcEEEEEEEcCCCC---ChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccC-----CeEEEEEeCCCCcHHHHHhhcc--
Confidence            356779999997531   233456789999999999999999999998752     3899999999999999997542  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc-----------cCCCcccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI-----------ENKKYLSATR  152 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~-----------~~~~t~~y~a  152 (218)
                       ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++...           ...+++.|+|
T Consensus       431 -~~l~~~~~~~i~~qi~~~L~~LH~--~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~A  507 (613)
T 2ozo_A          431 -EEIPVSNVAELLHQVSMGMKYLEE--KNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYA  507 (613)
T ss_dssp             -TTSCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSC
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHH--CCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeC
Confidence             459999999999999999999999  77999999999999999999999999998651           2334578999


Q ss_pred             cccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          153 QTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ||+.  ..++.          +++|++ |..||.+....+
T Consensus       508 PE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~  547 (613)
T 2ozo_A          508 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE  547 (613)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH
T ss_pred             HhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Confidence            9972  33333          699998 999998766544

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.96  E-value=1.2e-28  Score=204.01  Aligned_cols=171  Identities=17%  Similarity=0.239  Sum_probs=136.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC----CCCeEEEEEeccCCCCHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN----DKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~----~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +..+|..||||++......  ......+.+|+.++..++||||+++++++.....    ..+.+|+||||++ ++|...+
T Consensus        38 ~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l  114 (351)
T 3mi9_A           38 HRKTGQKVALKKVLMENEK--EGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE-HDLAGLL  114 (351)
T ss_dssp             ETTTCCEEEEEECCCSSCS--SSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCS-EEHHHHH
T ss_pred             ECCCCCEEEEEEEeccccc--ccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEEEeccC-CCHHHHH
Confidence            4578999999998754222  2234467789999999999999999999877432    1356899999996 5888888


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCC
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENK  145 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~  145 (218)
                      ....   ..+++..++.++.||+.||.|||+  .||+||||+|+|||++.++.++|+|||++..            ....
T Consensus       115 ~~~~---~~~~~~~~~~i~~qi~~~l~~LH~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~  189 (351)
T 3mi9_A          115 SNVL---VKFTLSEIKRVMQMLLNGLYYIHR--NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRV  189 (351)
T ss_dssp             HCTT---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSC
T ss_pred             hhcc---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcc
Confidence            7643   359999999999999999999999  7799999999999999999999999998753            3456


Q ss_pred             CcccccccccCC---CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          146 KYLSATRQTYGR---PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       146 ~t~~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      +|+.|+|||+..   .++.          +++|++|..||.+......
T Consensus       190 gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~  237 (351)
T 3mi9_A          190 VTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQ  237 (351)
T ss_dssp             SCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             cccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHH
Confidence            799999999622   2333          6999999999987655443

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.96  E-value=6.3e-29  Score=205.61  Aligned_cols=157  Identities=18%  Similarity=0.224  Sum_probs=128.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++.....        ...+|+.++..+ +||||+++++++.+..    .+|+||||++|++|.+++...
T Consensus        43 ~~~~~~~~avK~~~~~~~--------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~----~~~lv~E~~~gg~L~~~i~~~  110 (342)
T 2qr7_A           43 HKATNMEFAVKIIDKSKR--------DPTEEIEILLRYGQHPNIITLKDVYDDGK----YVYVVTELMKGGELLDKILRQ  110 (342)
T ss_dssp             ETTTTEEEEEEEEETTTC--------CCHHHHHHHHHHTTSTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHTC
T ss_pred             ECCCCCEEEEEEEEcccC--------ChHHHHHHHHHhcCCCCcCeEEEEEEcCC----EEEEEEeCCCCCcHHHHHHHc
Confidence            457899999999974321        234577778777 7999999999997643    699999999999999999765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC----CcEEEeecCcccc--------ccCCCcc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN----GLVKIGCDTYTHT--------IENKKYL  148 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~----~~~ki~dfg~~~~--------~~~~~t~  148 (218)
                          ..+++..++.++.||+.||.|||+  .||+||||+|+|||+..+    +.++|+|||++..        ....+|+
T Consensus       111 ----~~~~~~~~~~~~~qi~~al~~lH~--~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~  184 (342)
T 2qr7_A          111 ----KFFSEREASAVLFTITKTVEYLHA--QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTA  184 (342)
T ss_dssp             ----TTCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCS
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHH--CCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCc
Confidence                349999999999999999999999  779999999999998443    3599999999864        3457899


Q ss_pred             cccccccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          149 SATRQTYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       149 ~y~aPE~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      .|+|||+..  .++.          +|+|++|..||....
T Consensus       185 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~  224 (342)
T 2qr7_A          185 NFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGP  224 (342)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSST
T ss_pred             cccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCC
Confidence            999999732  2222          799999999998643

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.96  E-value=2.4e-28  Score=196.55  Aligned_cols=165  Identities=17%  Similarity=0.132  Sum_probs=127.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...  .........+..+...++.+.||||+++++++.+..    .+++||||++ ++|.+++....
T Consensus        28 ~~~~~~~vavK~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~l~~~~  100 (290)
T 3fme_A           28 HVPSGQIMAVKRIRAT--VNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG----DVWICMELMD-TSLDKFYKQVI  100 (290)
T ss_dssp             ETTTTEEEEEEEEC-----CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----SEEEEEECCS-EEHHHHHHHHH
T ss_pred             ecCCCeEEEEEEeecc--cCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccC----CEEEEEehhc-cchHHHHHHHH
Confidence            4568999999999743  222333444555556688889999999999998654    5899999996 69999887755


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSP-PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~-~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aP  153 (218)
                      .....+++..++.++.|++.||.|||+  + +|+||||+|+|||++.++.++|+|||++..       ....+|+.|+||
T Consensus       101 ~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aP  178 (290)
T 3fme_A          101 DKGQTIPEDILGKIAVSIVKALEHLHS--KLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAP  178 (290)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHHHH--HSCCCCCCCSGGGCEECTTCCEEBCCC---------------CCCCCCSCH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHhh--cCCeecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCCccccCh
Confidence            445679999999999999999999999  5 699999999999999999999999998864       345789999999


Q ss_pred             ccCC------CCch----------hhhhhhCCCCCCcc
Q psy238          154 TYGR------PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       154 E~~~------~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+..      .++.          ++++++|..||...
T Consensus       179 E~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  216 (290)
T 3fme_A          179 ERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW  216 (290)
T ss_dssp             HHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred             hhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcccc
Confidence            9731      2222          69999999999754

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.96  E-value=4.3e-29  Score=204.80  Aligned_cols=166  Identities=19%  Similarity=0.241  Sum_probs=131.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....   .......+.+|+.++..++||||+++++++.+..    .+++||||++ ++|.+++....
T Consensus        23 ~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~~   94 (324)
T 3mtl_A           23 SKLTDNLVALKEIRLEH---EEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK----SLTLVFEYLD-KDLKQYLDDCG   94 (324)
T ss_dssp             ETTTCCEEEEEEECC---------CCCCCCCHHHHSCCCCTTBCCEEEEEECSS----CEEEEEECCS-EEHHHHHHHTT
T ss_pred             ECCCCcEEEEEEEeccc---ccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCC----EEEEEecccc-cCHHHHHHhcC
Confidence            45689999999997432   1222224557999999999999999999997654    5899999996 69999988753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+|+.|+||
T Consensus        95 ---~~~~~~~~~~~~~qi~~aL~~LH~--~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aP  169 (324)
T 3mtl_A           95 ---NIINMHNVKLFLFQLLRGLAYCHR--QKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPP  169 (324)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHHHHHHH--TTEEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCCH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccCh
Confidence               358999999999999999999999  7799999999999999999999999998864        345679999999


Q ss_pred             ccC---CCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          154 TYG---RPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       154 E~~---~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+.   ..++.          +++|++|..||.+....+.
T Consensus       170 E~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~  209 (324)
T 3mtl_A          170 DILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQ  209 (324)
T ss_dssp             HHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             hhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            962   23333          6999999999987665443

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.96  E-value=3.7e-28  Score=198.50  Aligned_cols=167  Identities=16%  Similarity=0.198  Sum_probs=136.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      .++..||||++...   ........+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++..... 
T Consensus        53 ~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~~  125 (322)
T 1p4o_A           53 EPETRVAIKTVNEA---ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ----PTLVIMELMTRGDLKSYLRSLRPA  125 (322)
T ss_dssp             EEEEEEEEEECCTT---SCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHHHHH
T ss_pred             CCceEEEEEecccc---cCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCC----ccEEEEEeCCCCcHHHHHHHhchh
Confidence            45788999999742   23455667899999999999999999999987644    58999999999999999986532 


Q ss_pred             -----cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCc
Q psy238           83 -----NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKY  147 (218)
Q Consensus        83 -----~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t  147 (218)
                           ....+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....+|
T Consensus       126 ~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  203 (322)
T 1p4o_A          126 MANNPVLAPPSLSKMIQMAGEIADGMAYLNA--NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP  203 (322)
T ss_dssp             HHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH--TTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEEC
T ss_pred             hccCCCCCCcCHHHHHHHHHHHHHHHHHHHH--CCCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCC
Confidence                 11347899999999999999999999  7799999999999999999999999998864          234557


Q ss_pred             cccccccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          148 LSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       148 ~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      +.|+|||+  +..++.          +++|++ |..||.....++
T Consensus       204 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~  248 (322)
T 1p4o_A          204 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ  248 (322)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH
T ss_pred             CCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHH
Confidence            88999997  333333          688998 899997765443

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.96  E-value=3.8e-28  Score=198.60  Aligned_cols=170  Identities=18%  Similarity=0.223  Sum_probs=128.8

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCC--CeEEEEEeccCCCCHHHHHHhhcc--
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDK--PRVIFITEYMSSGSLKQFLKRTKR--   82 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~~--   82 (218)
                      ..||||++....  ........+.+|+.+++.++||||+++++++......+  ...++||+|+++++|.+++.....  
T Consensus        52 ~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~  129 (323)
T 3qup_A           52 VKVAVKMLKADI--IASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGE  129 (323)
T ss_dssp             CEEEEEEC--------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC--
T ss_pred             eeEEEEEecccc--cCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccc
Confidence            379999997431  12345678899999999999999999999987654311  234899999999999999976542  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATR  152 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~a  152 (218)
                      ....+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....+++.|+|
T Consensus       130 ~~~~~~~~~~~~i~~qi~~al~~LH~--~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~a  207 (323)
T 3qup_A          130 NPFNLPLQTLVRFMVDIACGMEYLSS--RNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLA  207 (323)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCC
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHc--CCcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccC
Confidence            12258999999999999999999999  7799999999999999999999999999864          23455778999


Q ss_pred             ccc--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          153 QTY--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      ||+  +..++.          ++++++ |..||.+....+.
T Consensus       208 PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~  248 (323)
T 3qup_A          208 LESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEI  248 (323)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH
T ss_pred             chhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHH
Confidence            997  333333          689999 9999987655443

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.96  E-value=3.5e-28  Score=197.10  Aligned_cols=170  Identities=16%  Similarity=0.271  Sum_probs=136.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++..............+.+|+.++..++||||+++++++....  ...+|+||||+++ +|.+++....
T Consensus        26 ~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~~~~~lv~e~~~~-~l~~~~~~~~  102 (305)
T 2wtk_C           26 DSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEE--KQKMYMVMEYCVC-GMQEMLDSVP  102 (305)
T ss_dssp             BTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC-----CEEEEEECCSE-EHHHHHHHST
T ss_pred             ECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCC--CCeEEEEehhccC-CHHHHHHhCc
Confidence            457899999999985432222345678899999999999999999999985432  2468999999975 5888877653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                      .  ..+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..          ....+|+.|+
T Consensus       103 ~--~~~~~~~~~~~~~qi~~al~~LH~--~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~  178 (305)
T 2wtk_C          103 E--KRFPVCQAHGYFCQLIDGLEYLHS--QGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQ  178 (305)
T ss_dssp             T--CSCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGC
T ss_pred             c--cccCHHHHHHHHHHHHHHHHHHHH--CCeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCc
Confidence            3  459999999999999999999999  7799999999999999999999999998864          3456899999


Q ss_pred             ccccCCC--C--ch----------hhhhhhCCCCCCcchhh
Q psy238          152 RQTYGRP--I--SG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       152 aPE~~~~--~--~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |||+...  .  +.          +++|++|..||......
T Consensus       179 aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  219 (305)
T 2wtk_C          179 PPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY  219 (305)
T ss_dssp             CHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH
Confidence            9997331  1  11          69999999999875543

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.96  E-value=7.7e-29  Score=206.92  Aligned_cols=168  Identities=18%  Similarity=0.183  Sum_probs=128.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC--CCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH--NDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~--~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||++...  .........+.+|+.+|+.++||||+++++++....  .....+|+||+++ +++|.+++..
T Consensus        50 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~  126 (367)
T 2fst_X           50 DTKTGLRVAVKKLSRP--FQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC  126 (367)
T ss_dssp             ETTTTEEEEEEECSST--TSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-----
T ss_pred             ECCCCCEEEEEEeCcc--ccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc
Confidence            5678999999998743  233456678889999999999999999999986532  1124589999999 6899998865


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                           ..+++..++.++.||+.||.|||+  .||+||||+|+|||++.++.++|+|||++..     ....+|.+|+|||
T Consensus       127 -----~~l~~~~~~~i~~qi~~aL~~LH~--~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE  199 (367)
T 2fst_X          127 -----QKLTDDHVQFLIYQILRGLKYIHS--ADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPE  199 (367)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTCCEEECC---------------CCCTTCCHH
T ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHH--CCeeeCCCCHhhEEECCCCCEEEeeccccccccccCCCcCcCcCccChH
Confidence                 349999999999999999999999  7799999999999999999999999999875     4467899999999


Q ss_pred             cC---CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          155 YG---RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       155 ~~---~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +.   ..++.          +++|++|+.||.+.....
T Consensus       200 ~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~  237 (367)
T 2fst_X          200 IMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID  237 (367)
T ss_dssp             HHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             HHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            72   22332          799999999998766543

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.96  E-value=4.8e-28  Score=199.19  Aligned_cols=167  Identities=18%  Similarity=0.251  Sum_probs=134.8

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .+|..||||++...   ........+.+|+.++..+ +||||+++++++....    .+|+||||+++++|.+++.....
T Consensus        65 ~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~  137 (334)
T 2pvf_A           65 KEAVTVAVKMLKDD---ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG----PLYVIVEYASKGNLREYLRARRP  137 (334)
T ss_dssp             ---CEEEEEECCTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----CCEEEEECCTTCBHHHHHHTTSC
T ss_pred             ccceEEEEeeeccC---CcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCC----ceEEEEECCCCCcHHHHHHHhcc
Confidence            56788999999742   2345567889999999999 8999999999997644    58999999999999999987542


Q ss_pred             c------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------
Q psy238           83 N------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------  141 (218)
Q Consensus        83 ~------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------  141 (218)
                      .            ...+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..         
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~  215 (334)
T 2pvf_A          138 PGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS--QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK  215 (334)
T ss_dssp             TTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEEC
T ss_pred             ccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh--CCeeCCCCccceEEEcCCCCEEEccccccccccccccccc
Confidence            1            1248899999999999999999999  7799999999999999999999999998864         


Q ss_pred             -ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          142 -IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       142 -~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                       ....+++.|+|||+.  ..++.          +++|++ |..||.+...++
T Consensus       216 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~  267 (334)
T 2pvf_A          216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE  267 (334)
T ss_dssp             CSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred             cCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHH
Confidence             234567889999962  22222          689999 999998765443

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.96  E-value=1e-27  Score=193.69  Aligned_cols=167  Identities=14%  Similarity=0.200  Sum_probs=138.2

Q ss_pred             CCCCCcEEEEEEeeccccc-----ccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERK-----NFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~-----~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      +..+|..||||++......     ........+.+|+.++..+. ||||+++++++....    .+++||||+++++|.+
T Consensus        38 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~  113 (298)
T 1phk_A           38 HKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNT----FFFLVFDLMKKGELFD  113 (298)
T ss_dssp             ETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS----EEEEEEECCTTCBHHH
T ss_pred             EcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCC----eEEEEEeccCCCcHHH
Confidence            4568999999999754311     11334567889999999995 999999999997643    6899999999999999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcc
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      ++...    ..+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..       ....+++
T Consensus       114 ~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  187 (298)
T 1phk_A          114 YLTEK----VTLSEKETRKIMRALLEVICALHK--LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTP  187 (298)
T ss_dssp             HHHHH----SSCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCG
T ss_pred             HHhcc----CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCcceEEEcCCCcEEEecccchhhcCCCcccccccCCc
Confidence            99865    349999999999999999999999  7799999999999999999999999998864       3457899


Q ss_pred             cccccccCC--------CCch----------hhhhhhCCCCCCcchhh
Q psy238          149 SATRQTYGR--------PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       149 ~y~aPE~~~--------~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .|+|||+..        .++.          +++|++|..||......
T Consensus       188 ~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~  235 (298)
T 1phk_A          188 SYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM  235 (298)
T ss_dssp             GGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             cccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHH
Confidence            999999631        2222          69999999999776543

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.96  E-value=1.3e-28  Score=206.33  Aligned_cols=167  Identities=19%  Similarity=0.226  Sum_probs=136.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC--------CCcccceeeeeecCCCCCCeEEEEEeccCCCCH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE--------HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSL   73 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~--------hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL   73 (218)
                      |..+|..||||++...     ......+.+|+.++..+.        ||||+++++++...+....++|+||||+ +++|
T Consensus        58 ~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~-~~~l  131 (397)
T 1wak_A           58 DIQGKKFVAMKVVKSA-----EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVL-GHHL  131 (397)
T ss_dssp             ETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCC-CCBH
T ss_pred             ecCCCeEEEEEEEecC-----CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEecc-CccH
Confidence            4678999999999732     345667889999998885        7889999999885544456799999999 6788


Q ss_pred             HHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CcccCCCCCCcEEEecCC-----------------------
Q psy238           74 KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSP-PIIHGNLTCDTIFIQHNG-----------------------  129 (218)
Q Consensus        74 ~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~-~iiH~dlkp~NiLl~~~~-----------------------  129 (218)
                      .+++.....  ..+++..++.++.||+.||.|||+  + +|+||||||+|||++.++                       
T Consensus       132 ~~~~~~~~~--~~~~~~~~~~i~~qi~~aL~~lH~--~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (397)
T 1wak_A          132 LKWIIKSNY--QGLPLPCVKKIIQQVLQGLDYLHT--KCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSG  207 (397)
T ss_dssp             HHHHHHTTT--SCCCHHHHHHHHHHHHHHHHHHHH--TTCEECCCCSGGGEEECCCHHHHHHHHHHHC------------
T ss_pred             HHHHHhccc--CCCCHHHHHHHHHHHHHHHHHHHH--hCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCC
Confidence            887766532  459999999999999999999999  6 799999999999998775                       


Q ss_pred             --------------------------cEEEeecCcccc-----ccCCCccccccccc--CCCCch----------hhhhh
Q psy238          130 --------------------------LVKIGCDTYTHT-----IENKKYLSATRQTY--GRPISG----------QYEIV  166 (218)
Q Consensus       130 --------------------------~~ki~dfg~~~~-----~~~~~t~~y~aPE~--~~~~~~----------~~ei~  166 (218)
                                                .++|+|||++..     ....||+.|+|||+  +..++.          +|+|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  287 (397)
T 1wak_A          208 SAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELA  287 (397)
T ss_dssp             ---------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHH
T ss_pred             CccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHh
Confidence                                      799999999864     45678999999997  333333          79999


Q ss_pred             hCCCCCCcchhh
Q psy238          167 TKTNNVTEKKKE  178 (218)
Q Consensus       167 tg~~p~~~~~~e  178 (218)
                      +|..||......
T Consensus       288 tg~~pf~~~~~~  299 (397)
T 1wak_A          288 TGDYLFEPHSGE  299 (397)
T ss_dssp             HSSCSCCCCCCS
T ss_pred             hCCCCCCCCccc
Confidence            999999865543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.96  E-value=2.5e-28  Score=198.00  Aligned_cols=163  Identities=20%  Similarity=0.223  Sum_probs=137.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++.....   ......+.+|+.++..+.||||+++++++....    .+|+||||+++++|.+++..  
T Consensus        43 ~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~--  113 (303)
T 3a7i_A           43 DNRTQKVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT----KLWIIMEYLGGGSALDLLEP--  113 (303)
T ss_dssp             ETTTCCEEEEEEEETTTC---STTHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCTTEEHHHHHTT--
T ss_pred             ECCCCcEEEEEEeccccc---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC----eEEEEEEeCCCCcHHHHHhc--
Confidence            456899999999985422   234567889999999999999999999997643    68999999999999999864  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         .++++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+|+.|+||
T Consensus       114 ---~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  188 (303)
T 3a7i_A          114 ---GPLDETQIATILREILKGLDYLHS--EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAP  188 (303)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCCccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccCH
Confidence               359999999999999999999999  7799999999999999999999999998854        345689999999


Q ss_pred             ccC--CCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG--RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~--~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.  ..++.          ++++++|..||......
T Consensus       189 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  225 (303)
T 3a7i_A          189 EVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM  225 (303)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             HHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH
Confidence            973  23332          69999999999765443

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.96  E-value=3.3e-29  Score=209.56  Aligned_cols=170  Identities=18%  Similarity=0.161  Sum_probs=126.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHH---HHhhcCCCCccccee-------eeeecCCC--------CCC----
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVF---ENLTQLEHPNIVKFH-------RYWTDTHN--------DKP----   59 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei---~~l~~l~hp~iv~l~-------~~~~~~~~--------~~~----   59 (218)
                      +..+|..||||++....... ......+.+|+   .+|+.++||||++++       +++.+.+.        +..    
T Consensus        94 ~~~~~~~vavK~~~~~~~~~-~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  172 (377)
T 3byv_A           94 DQETGESFEVHVPYFTERPP-SNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWV  172 (377)
T ss_dssp             C-CCCCEEEEEEEEECC-CC-TTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEE
T ss_pred             ECCCCcEEEEEEEeeccccc-hHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEE
Confidence            45789999999998432222 34557788999   556666899999998       55444321        011    


Q ss_pred             -eEEEEEeccCCCCHHHHHHhhcccC---CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEee
Q psy238           60 -RVIFITEYMSSGSLKQFLKRTKRNV---KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGC  135 (218)
Q Consensus        60 -~~~lv~e~~~~~sL~~~l~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~d  135 (218)
                       ..|+||||+ +|+|.+++.....-.   ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|
T Consensus       173 ~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~--~~ivHrDikp~NIll~~~~~~kL~D  249 (377)
T 3byv_A          173 LSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH--YGLVHTYLRPVDIVLDQRGGVFLTG  249 (377)
T ss_dssp             ESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECTTCCEEECC
T ss_pred             EEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEcCCCCEEEEe
Confidence             278999999 689999998754310   113348888899999999999999  7799999999999999999999999


Q ss_pred             cCcccc-----ccCCCcccccccccCC-------------CCch----------hhhhhhCCCCCCcch
Q psy238          136 DTYTHT-----IENKKYLSATRQTYGR-------------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       136 fg~~~~-----~~~~~t~~y~aPE~~~-------------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||++..     ....| +.|+|||+..             .++.          +++|++|..||.+..
T Consensus       250 FG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~  317 (377)
T 3byv_A          250 FEHLVRDGARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDA  317 (377)
T ss_dssp             GGGCEETTCEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             chhheecCCcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccc
Confidence            999875     45567 9999999722             2333          699999999997544

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.96  E-value=9.5e-29  Score=201.26  Aligned_cols=168  Identities=17%  Similarity=0.213  Sum_probs=136.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|..||||++...   ........+.+|+.++..+ +||||+++++++...+   ..+++||||+++++|.+++....
T Consensus        54 ~~~~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~---~~~~lv~e~~~~~~L~~~l~~~~  127 (316)
T 2xir_A           54 TATCRTVAVKMLKEG---ATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG---GPLMVIVEFCKFGNLSTYLRSKR  127 (316)
T ss_dssp             TTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT---SCCEEEEECCTTEEHHHHHHTCT
T ss_pred             cccceEEEEEecccC---CCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCC---CceEEEEEcCCCCcHHHHHHhcc
Confidence            467889999999743   2344566789999999999 7999999999987643   35899999999999999998754


Q ss_pred             cc------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------
Q psy238           82 RN------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------  141 (218)
Q Consensus        82 ~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------  141 (218)
                      ..            ...+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~--~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  205 (316)
T 2xir_A          128 NEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS--RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV  205 (316)
T ss_dssp             TSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSE
T ss_pred             cccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh--CCcccccCccceEEECCCCCEEECCCccccccccCccce
Confidence            21            1127899999999999999999999  7799999999999999999999999998864        


Q ss_pred             --ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          142 --IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       142 --~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                        ....+|+.|+|||+  +..++.          +++|++ |..||.+....
T Consensus       206 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~  257 (316)
T 2xir_A          206 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID  257 (316)
T ss_dssp             EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS
T ss_pred             eccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchh
Confidence              23456788999996  333333          689998 99999765543

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=7.5e-28  Score=198.19  Aligned_cols=161  Identities=19%  Similarity=0.249  Sum_probs=131.0

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||||++...   ........+.+|+.++..++||||+++++++....    .+++||||+++++|.+++....   .
T Consensus        73 ~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~---~  142 (333)
T 1mqb_A           73 EVPVAIKTLKAG---YTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK----PMMIITEYMENGALDKFLREKD---G  142 (333)
T ss_dssp             EEEEEEEEECTT---CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----SEEEEEECCTTEEHHHHHHHTT---T
T ss_pred             cccEEEEEcCCC---CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCC----CcEEEEeCCCCCcHHHHHHhCC---C
Confidence            456999999742   23455667899999999999999999999987643    5899999999999999998643   4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSATRQT  154 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~aPE  154 (218)
                      .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..           ....+|+.|+|||
T Consensus       143 ~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE  220 (333)
T 1mqb_A          143 EFSVLQLVGMLRGIAAGMKYLAN--MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPE  220 (333)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCch
Confidence            59999999999999999999999  7799999999999999999999999998865           1234467899999


Q ss_pred             c--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          155 Y--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      +  +..++.          ++++++ |..||......
T Consensus       221 ~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~  257 (333)
T 1mqb_A          221 AISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH  257 (333)
T ss_dssp             HHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH
T ss_pred             hcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH
Confidence            7  333333          688998 99999766543

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.96  E-value=5.9e-28  Score=194.79  Aligned_cols=161  Identities=20%  Similarity=0.261  Sum_probs=128.5

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      ...||||++...  .........+.+|+.+++.++||||+.+++++...     .+++||+|+++++|.+++....   .
T Consensus        46 ~~~vavK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~---~  115 (289)
T 3og7_A           46 HGDVAVKMLNVT--APTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP-----QLAIVTQWCEGSSLYHHLHASE---T  115 (289)
T ss_dssp             SSEEEEEEESCS--SCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-----SCEEEEECCCEEEHHHHHTTC-----
T ss_pred             cCceEEEEEecc--CCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCC-----ccEEEEEecCCCcHHHHHhhcc---C
Confidence            346999999754  23356677899999999999999999999976442     4799999999999999996543   4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY  155 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~  155 (218)
                      .+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..          ....||+.|+|||+
T Consensus       116 ~~~~~~~~~i~~qi~~~L~~lH~--~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~  193 (289)
T 3og7_A          116 KFEMKKLIDIARQTARGMDYLHA--KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEV  193 (289)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchh
Confidence            59999999999999999999999  7799999999999999999999999998864          23568999999996


Q ss_pred             C-----CCCch----------hhhhhhCCCCCCcchhh
Q psy238          156 G-----RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       156 ~-----~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      .     .+++.          +++|++|..||......
T Consensus       194 ~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~  231 (289)
T 3og7_A          194 IRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR  231 (289)
T ss_dssp             HC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH
T ss_pred             hcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH
Confidence            3     23332          69999999999775443

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=4.2e-28  Score=192.95  Aligned_cols=161  Identities=16%  Similarity=0.271  Sum_probs=134.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|++.....     ..+.+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....   
T Consensus        31 ~~~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~---   98 (267)
T 3t9t_A           31 NKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA----PICLVTEFMEHGCLSDYLRTQR---   98 (267)
T ss_dssp             TTEEEEEEEECTTTB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----SCEEEECCCTTCBHHHHHHHTT---
T ss_pred             CCCeEEEEEccccCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEccCC----CeEEEEeCCCCCcHHHHHhhCc---
Confidence            577899999985321     2256889999999999999999999997654    4899999999999999998653   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+|+|+||+|+||+++.++.++|+|||++..         ....++..|+|||+
T Consensus        99 ~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  176 (267)
T 3t9t_A           99 GLFAAETLLGMCLDVCEGMAYLEE--ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEV  176 (267)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccChhh
Confidence            358999999999999999999999  7799999999999999999999999998864         34556778999997


Q ss_pred             C--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 G--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 ~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      .  ..++.          ++++++ |..||......+
T Consensus       177 ~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~  213 (267)
T 3t9t_A          177 FSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE  213 (267)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             hcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH
Confidence            2  33333          689999 899998765443

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.96  E-value=3.4e-28  Score=196.16  Aligned_cols=165  Identities=20%  Similarity=0.237  Sum_probs=135.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||.+...    .......+.+|+.++..++||||+++++++....    .+++||||+++++|.+++....
T Consensus        43 ~~~~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  114 (295)
T 2clq_A           43 DLSNQVRIAIKEIPER----DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENG----FIKIFMEQVPGGSLSALLRSKW  114 (295)
T ss_dssp             ETTTCCEEEEEEEECC----CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETT----EEEEEEECCSEEEHHHHHHHTT
T ss_pred             ECCCCeEEEEEEccCC----chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCC----cEEEEEEeCCCCCHHHHHHhhc
Confidence            4568899999999743    2344567889999999999999999999997654    6899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-CCcEEEeecCcccc--------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      . ...+++..++.++.|++.||.|||+  .+|+|+||+|+|||++. ++.++|+|||++..        ....+++.|+|
T Consensus       115 ~-~~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a  191 (295)
T 2clq_A          115 G-PLKDNEQTIGFYTKQILEGLKYLHD--NQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMA  191 (295)
T ss_dssp             C-CCTTCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCC
T ss_pred             c-CCCccHHHHHHHHHHHHHHHHHHHh--CCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccC
Confidence            2 2347789999999999999999999  77999999999999997 89999999998864        34578999999


Q ss_pred             cccCC--C--Cch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR--P--ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~--~--~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+..  +  ++.          +++|++|..||.....
T Consensus       192 PE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  230 (295)
T 2clq_A          192 PEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGE  230 (295)
T ss_dssp             HHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSS
T ss_pred             hhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCc
Confidence            99732  1  222          6999999999976543

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.96  E-value=2.5e-28  Score=196.54  Aligned_cols=156  Identities=17%  Similarity=0.216  Sum_probs=128.7

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||+|++...    .......+.+|+.++..++||||+++++++.+..    ..++||||+++++|.+++....   ..
T Consensus        41 ~~va~K~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~---~~  109 (289)
T 4fvq_A           41 TEVLLKVLDKA----HRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD----ENILVQEFVKFGSLDTYLKKNK---NC  109 (289)
T ss_dssp             EEEEEEEECGG----GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT----CCEEEEECCTTCBHHHHHHHTG---GG
T ss_pred             hhhhhhhcccc----cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC----CCEEEEECCCCCCHHHHHHhCC---CC
Confidence            57999998742    2344567899999999999999999999997654    4799999999999999998754   34


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc--------EEEeecCcccc----ccCCCcccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL--------VKIGCDTYTHT----IENKKYLSATRQT  154 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~--------~ki~dfg~~~~----~~~~~t~~y~aPE  154 (218)
                      +++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.        ++|+|||++..    ....+|+.|+|||
T Consensus       110 ~~~~~~~~i~~qi~~~L~~LH~--~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE  187 (289)
T 4fvq_A          110 INILWKLEVAKQLAAAMHFLEE--NTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPE  187 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHHHHHHTTTTSCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhh--CCeECCCcCcceEEEecCCcccccccceeeeccCcccccccCccccCCcCcccCHH
Confidence            8999999999999999999999  77999999999999998887        99999999865    3345788999999


Q ss_pred             cCC---CCch----------hhhhhhCCCCCCcc
Q psy238          155 YGR---PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       155 ~~~---~~~~----------~~ei~tg~~p~~~~  175 (218)
                      +..   .++.          +++|++|..|+...
T Consensus       188 ~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~  221 (289)
T 4fvq_A          188 CIENPKNLNLATDKWSFGTTLWEICSGGDKPLSA  221 (289)
T ss_dssp             HHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             HhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccc
Confidence            732   2333          68999965555433

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.96  E-value=1.2e-28  Score=199.46  Aligned_cols=169  Identities=17%  Similarity=0.199  Sum_probs=124.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....   .......+.+|+.++..++||||+++++++....    .+++||||+++++|.+++....
T Consensus        36 ~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  108 (303)
T 2vwi_A           36 CAPKKEKVAIKRINLEK---CQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD----ELWLVMKLLSGGSVLDIIKHIV  108 (303)
T ss_dssp             C----CEEEEECCC-------------------CCCCCCCTTBCCEEEEEESSS----CEEEEEECCTTCBHHHHHHHHH
T ss_pred             ECCCCcEEEEEEEEhhh---cchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecC----CcEEEehhccCCchHHHHHHHh
Confidence            45688999999987532   2334567889999999999999999999997754    4899999999999999997532


Q ss_pred             c----cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------------ccC
Q psy238           82 R----NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------------IEN  144 (218)
Q Consensus        82 ~----~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------------~~~  144 (218)
                      .    ....+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..             ...
T Consensus       109 ~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  186 (303)
T 2vwi_A          109 AKGEHKSGVLDESTIATILREVLEGLEYLHK--NGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTF  186 (303)
T ss_dssp             HTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC--------------
T ss_pred             hccccccCCCCHHHHHHHHHHHHHHHHHHHh--CCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhccc
Confidence            1    12458999999999999999999999  7799999999999999999999999998753             234


Q ss_pred             CCcccccccccC---CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          145 KKYLSATRQTYG---RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       145 ~~t~~y~aPE~~---~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      .+|+.|+|||+.   ..++.          +++|++|..||.......
T Consensus       187 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  234 (303)
T 2vwi_A          187 VGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK  234 (303)
T ss_dssp             -CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGG
T ss_pred             CCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhh
Confidence            689999999973   22332          699999999998765443

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.96  E-value=3.7e-28  Score=200.72  Aligned_cols=159  Identities=16%  Similarity=0.178  Sum_probs=130.9

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC--CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH--PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h--p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      .+|..||||++....  ........+.+|+.+|..+.|  |||+++++++....    .+|+|||+. +++|.+++... 
T Consensus        31 ~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~----~~~lv~e~~-~~~L~~~l~~~-  102 (343)
T 3dbq_A           31 EKKQIYAIKYVNLEE--ADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ----YIYMVMECG-NIDLNSWLKKK-  102 (343)
T ss_dssp             TTSCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----EEEEEECCC-SEEHHHHHHHS-
T ss_pred             CCCCEEEEEEeeccc--cchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCC----EEEEEEeCC-CCCHHHHHHhc-
Confidence            468899999998542  334566788999999999976  99999999987643    699999954 78999999875 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++ ++.++|+|||++..          ....||+.|+
T Consensus       103 ---~~~~~~~~~~i~~qi~~al~~lH~--~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~  176 (343)
T 3dbq_A          103 ---KSIDPWERKSYWKNMLEAVHTIHQ--HGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYM  176 (343)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcC
Confidence               349999999999999999999999  7799999999999996 68899999999864          2457899999


Q ss_pred             ccccC-------------CCCch----------hhhhhhCCCCCCcch
Q psy238          152 RQTYG-------------RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       152 aPE~~-------------~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |||+.             ..++.          +++|++|+.||....
T Consensus       177 aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  224 (343)
T 3dbq_A          177 PPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII  224 (343)
T ss_dssp             CHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             CHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhh
Confidence            99973             22222          699999999997643

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.96  E-value=2.9e-28  Score=197.35  Aligned_cols=164  Identities=18%  Similarity=0.219  Sum_probs=133.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||+|++....    ......+.+|+.++..++||||+++++++....    .+++||||+++++|.+++....
T Consensus        40 ~~~~~~~~aiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~  111 (302)
T 2j7t_A           40 NKETGALAAAKVIETKS----EEELEDYIVEIEILATCDHPYIVKLLGAYYHDG----KLWIMIEFCPGGAVDAIMLELD  111 (302)
T ss_dssp             ETTTCCEEEEEEEC--------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-----CEEEEEECCTTEEHHHHHHHHT
T ss_pred             EcCCCcEEEEEEecCCC----HHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCC----eEEEEEEeCCCCcHHHHHHhhc
Confidence            35678999999997432    233467889999999999999999999997654    5899999999999999987643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+++|+||+|+|||++.++.++|+|||++..        ....+|+.|+||
T Consensus       112 ---~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  186 (302)
T 2j7t_A          112 ---RGLTEPQIQVVCRQMLEALNFLHS--KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAP  186 (302)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCH
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHhc--CCcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCC
Confidence               359999999999999999999999  7799999999999999999999999998643        446789999999


Q ss_pred             ccC-------CCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TYG-------RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~~-------~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+.       ..++.          +++|++|..||......
T Consensus       187 E~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  228 (302)
T 2j7t_A          187 EVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM  228 (302)
T ss_dssp             HHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             eeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHH
Confidence            963       22222          68999999999876543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.96  E-value=3.7e-28  Score=199.22  Aligned_cols=163  Identities=23%  Similarity=0.322  Sum_probs=134.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++...    .......+.+|+.++..++||||+++++++....  ...+++||||+++++|.+++....
T Consensus        66 ~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~  139 (326)
T 2w1i_A           66 QDNTGEVVAVKKLQHS----TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG--RRNLKLIMEYLPYGSLRDYLQKHK  139 (326)
T ss_dssp             SSSCCEEEEEEEESSC----CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------CCEEEECCCTTCBHHHHHHHST
T ss_pred             cCCCceEEEEEEeccC----CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecC--CCceEEEEECCCCCCHHHHHHhcc
Confidence            4678999999999742    2455678899999999999999999999987643  235899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y  150 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..           ....++..|
T Consensus       140 ---~~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  214 (326)
T 2w1i_A          140 ---ERIDHIKLLQYTSQICKGMEYLGT--KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFW  214 (326)
T ss_dssp             ---TSSCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGG
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHh--CCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeE
Confidence               348999999999999999999999  7799999999999999999999999998865           223456779


Q ss_pred             cccccC--CCCch----------hhhhhhCCCCCCcc
Q psy238          151 TRQTYG--RPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       151 ~aPE~~--~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      +|||+.  ..++.          +++|++|..|+...
T Consensus       215 ~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~  251 (326)
T 2w1i_A          215 YAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP  251 (326)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSH
T ss_pred             ECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCC
Confidence            999972  22222          69999999998754

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.96  E-value=6.2e-28  Score=204.79  Aligned_cols=167  Identities=14%  Similarity=0.194  Sum_probs=133.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|..||||++....        ....+|+.+|+.++||||++++++|.....  +..++++||||++ ++|.+++..
T Consensus        75 ~~~~~~~vaiK~~~~~~--------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~  145 (420)
T 1j1b_A           75 LCDSGELVAIKKVLQDK--------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVP-ETVYRVARH  145 (420)
T ss_dssp             ETTTCCEEEEEEEECCT--------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCC-EEHHHHHHH
T ss_pred             ECCCCcEEEEEEecccc--------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhccc-ccHHHHHHH
Confidence            45689999999987431        123468999999999999999998865432  2335779999996 588887776


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc-------ccCCCccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                      .......+++..++.++.||+.||.|||+  .+|+||||||+|||++.+ +.++|+|||++..       ....+|..|+
T Consensus       146 ~~~~~~~l~~~~~~~~~~qi~~aL~~LH~--~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~  223 (420)
T 1j1b_A          146 YSRAKQTLPVIYVKLYMYQLFRSLAYIHS--FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYR  223 (420)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHHHT--TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCTTSC
T ss_pred             HhhccCCCCHHHHHHHHHHHHHHHHHHHH--CCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeeeeCCCcC
Confidence            54444679999999999999999999999  779999999999999965 6789999999864       3467899999


Q ss_pred             ccccC--C-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTYG--R-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~~--~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+.  . .++.          +|+|++|+.||.+....+
T Consensus       224 aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~  264 (420)
T 1j1b_A          224 APELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD  264 (420)
T ss_dssp             CHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             CHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            99973  2 3333          799999999998765543

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.96  E-value=8.4e-28  Score=204.51  Aligned_cols=165  Identities=18%  Similarity=0.200  Sum_probs=135.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC------CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL------EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l------~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      |..+|..||||++...     ......+.+|+.++..+      +|+||+.+++++....    .+|+||||+. ++|.+
T Consensus       118 ~~~~~~~vAvK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~----~~~lv~e~~~-~~L~~  187 (429)
T 3kvw_A          118 DHKVHQHVALKMVRNE-----KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN----HICMTFELLS-MNLYE  187 (429)
T ss_dssp             ETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT----EEEEEECCCC-CBHHH
T ss_pred             ECCCCcEEEEEEECCc-----cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC----eEEEEEeccC-CCHHH
Confidence            4678999999999742     33445666777777665      6789999999997753    6999999995 79999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc--EEEeecCcccc-----ccCCCcc
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL--VKIGCDTYTHT-----IENKKYL  148 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~--~ki~dfg~~~~-----~~~~~t~  148 (218)
                      ++.....  ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.  ++|+|||++..     ....+|+
T Consensus       188 ~l~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~--~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~~~gt~  263 (429)
T 3kvw_A          188 LIKKNKF--QGFSLPLVRKFAHSILQCLDALHK--NRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSR  263 (429)
T ss_dssp             HHHHTTT--CCCCHHHHHHHHHHHHHHHHHHHH--HTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCG
T ss_pred             HHHhccC--CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHeEEccCCCcceEEeecccceecCCcccccCCCC
Confidence            9987643  459999999999999999999999  77999999999999999887  99999999864     4568899


Q ss_pred             ccccccc--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          149 SATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       149 ~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      .|+|||+  +..++.          +++|++|..||.+....+.
T Consensus       264 ~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~  307 (429)
T 3kvw_A          264 FYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQ  307 (429)
T ss_dssp             GGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             CccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHH
Confidence            9999997  333433          7999999999987765443

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.96  E-value=3e-28  Score=199.34  Aligned_cols=167  Identities=17%  Similarity=0.207  Sum_probs=134.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|..||||++....     .....+.+|+.++..+ +||||+++++++.....  ....+++||||+++++|.+++.
T Consensus        45 ~~~~~~~vaiK~~~~~~-----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  119 (326)
T 2x7f_A           45 HVKTGQLAAIKVMDVTG-----DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIK  119 (326)
T ss_dssp             ETTTCCEEEEEEEECCS-----STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHH
T ss_pred             ECCCCCeEEEEEEecCc-----ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHH
Confidence            35689999999997532     1235678899999998 89999999999876432  1357899999999999999998


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                      ....  ..+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+|+.|
T Consensus       120 ~~~~--~~~~~~~~~~i~~qi~~~l~~lH~--~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y  195 (326)
T 2x7f_A          120 NTKG--NTLKEEWIAYICREILRGLSHLHQ--HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYW  195 (326)
T ss_dssp             HSGG--GCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCSGGGEEECTTCCEEECCCTTTC-------------CCGGG
T ss_pred             hccc--CCCCHHHHHHHHHHHHHHHHHHHH--CCccccCCcHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccc
Confidence            7542  459999999999999999999999  7799999999999999999999999998764        345689999


Q ss_pred             cccccCC-------CCch----------hhhhhhCCCCCCcchh
Q psy238          151 TRQTYGR-------PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       151 ~aPE~~~-------~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      +|||+..       .++.          +++|++|..||.....
T Consensus       196 ~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  239 (326)
T 2x7f_A          196 MAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP  239 (326)
T ss_dssp             CCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             cChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcH
Confidence            9999732       2222          7999999999976543

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.96  E-value=4.6e-28  Score=197.28  Aligned_cols=161  Identities=16%  Similarity=0.194  Sum_probs=135.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....      ....+.+|+.++..++||||+++++++....    .+|+||||+++++|.+++....
T Consensus        50 ~~~~~~~vaiK~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~~  119 (314)
T 3com_A           50 HKETGQIVAIKQVPVES------DLQEIIKEISIMQQCDSPHVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIIRLRN  119 (314)
T ss_dssp             ETTTCCEEEEEEEETTS------CCHHHHHHHHHHHTCCCTTBCCEEEEEEETT----EEEEEEECCTTEEHHHHHHHHT
T ss_pred             ECCCCCEEEEEecCchH------HHHHHHHHHHHHHhCCCCCCccEEEEEEeCC----EEEEEeecCCCCCHHHHHHhcC
Confidence            45679999999997531      2346788999999999999999999987643    6899999999999999997543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..        ....+++.|+||
T Consensus       120 ---~~~~~~~~~~i~~~i~~~l~~lH~--~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  194 (314)
T 3com_A          120 ---KTLTEDEIATILQSTLKGLEYLHF--MRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP  194 (314)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccCh
Confidence               459999999999999999999999  7799999999999999999999999998854        345789999999


Q ss_pred             ccCC--CCch----------hhhhhhCCCCCCcchh
Q psy238          154 TYGR--PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~~--~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+..  .++.          +++|++|..||.....
T Consensus       195 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  230 (314)
T 3com_A          195 EVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHP  230 (314)
T ss_dssp             HHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             hhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCCh
Confidence            9732  2332          6999999999976543

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.96  E-value=4.4e-28  Score=195.78  Aligned_cols=160  Identities=9%  Similarity=0.065  Sum_probs=132.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++....      ....+.+|+.++..+ +|++++.+++++....    ..++||||+ +++|.+++...
T Consensus        31 ~~~~~~~vavK~~~~~~------~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~----~~~lv~e~~-~~~L~~~l~~~   99 (298)
T 1csn_A           31 NLLNNQQVAIKFEPRRS------DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGL----HNVLVIDLL-GPSLEDLLDLC   99 (298)
T ss_dssp             ETTTTEEEEEEEEECCT------TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETT----EEEEEEECC-CCBHHHHHHHT
T ss_pred             ECCCCcEEEEEEeccCC------ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCc----eeEEEEEec-CCCHHHHHHHh
Confidence            45789999999987432      123467889999999 7999999999987643    689999999 89999999865


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc-----EEEeecCcccc--------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL-----VKIGCDTYTHT--------------  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~-----~ki~dfg~~~~--------------  141 (218)
                      .   ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.     ++|+|||++..              
T Consensus       100 ~---~~~~~~~~~~i~~qi~~~l~~lH~--~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~  174 (298)
T 1csn_A          100 G---RKFSVKTVAMAAKQMLARVQSIHE--KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYRE  174 (298)
T ss_dssp             T---TCCCHHHHHHHHHHHHHHHHHHHT--TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCC
T ss_pred             c---cCCCHHHHHHHHHHHHHHHHHHHh--CCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccC
Confidence            3   359999999999999999999999  77999999999999987765     99999999864              


Q ss_pred             -ccCCCcccccccccC--CCCch----------hhhhhhCCCCCCcchh
Q psy238          142 -IENKKYLSATRQTYG--RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       142 -~~~~~t~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                       ....||+.|+|||+.  ..++.          +++|++|..||.+...
T Consensus       175 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  223 (298)
T 1csn_A          175 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKA  223 (298)
T ss_dssp             CCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCS
T ss_pred             ccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhc
Confidence             234589999999973  33333          6999999999987543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.96  E-value=3.3e-28  Score=199.53  Aligned_cols=168  Identities=17%  Similarity=0.250  Sum_probs=131.9

Q ss_pred             CCCCcEE--EEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            3 TEEGVEV--VWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         3 ~~~g~~v--AvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ..+|..+  |||.+...   ........+.+|+.++..+ +||||+++++++.+..    .+|+||||+++++|.+++..
T Consensus        47 ~~~~~~~~v~iK~~~~~---~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~  119 (327)
T 1fvr_A           47 KKDGLRMDAAIKRMKEY---ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG----YLYLAIEYAPHGNLLDFLRK  119 (327)
T ss_dssp             EETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT----EEEEEECCCTTCBHHHHHHT
T ss_pred             ccCCcccceeeeeeccc---cchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCC----ceEEEEecCCCCCHHHHHHh
Confidence            3456644  99988732   2234556788999999999 8999999999997754    68999999999999999986


Q ss_pred             hc------------ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------
Q psy238           80 TK------------RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------  141 (218)
Q Consensus        80 ~~------------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------  141 (218)
                      ..            .....+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..      
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~~  197 (327)
T 1fvr_A          120 SRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK  197 (327)
T ss_dssp             TCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECC
T ss_pred             cccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh--CCccCCCCccceEEEcCCCeEEEcccCcCcccccccc
Confidence            53            122459999999999999999999999  7799999999999999999999999999864      


Q ss_pred             -ccCCCcccccccccC--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          142 -IENKKYLSATRQTYG--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       142 -~~~~~t~~y~aPE~~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                       ....+++.|+|||+.  ..++.          +++|++ |..||.+....+
T Consensus       198 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~  249 (327)
T 1fvr_A          198 KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE  249 (327)
T ss_dssp             C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             ccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH
Confidence             344567889999972  22222          689998 999998765443

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.96  E-value=2e-28  Score=201.05  Aligned_cols=168  Identities=20%  Similarity=0.250  Sum_probs=136.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++......  ......+.+|+.++..+ +||||+++++++....    .+++||||+++++|.+++...
T Consensus        50 ~~~~~~~vavK~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~~~~~  123 (327)
T 3lm5_A           50 SKSTGQEYAAKFLKKRRRG--QDCRAEILHEIAVLELAKSCPRVINLHEVYENTS----EIILILEYAAGGEIFSLCLPE  123 (327)
T ss_dssp             ETTTCCEEEEEEEESEETT--EECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----EEEEEEECCTTEEGGGGGSSC
T ss_pred             ECCCCCEEEEEEEehhhcc--hHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC----eEEEEEEecCCCcHHHHHHHh
Confidence            4568999999999854222  22345788999999998 5699999999997644    689999999999999988654


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---CCcEEEeecCcccc-------ccCCCcccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---NGLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                      ..  ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.   ++.++|+|||++..       ....||+.|
T Consensus       124 ~~--~~~~~~~~~~i~~ql~~~L~~LH~--~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y  199 (327)
T 3lm5_A          124 LA--EMVSENDVIRLIKQILEGVYYLHQ--NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEY  199 (327)
T ss_dssp             C---CCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGG
T ss_pred             cc--cCCCHHHHHHHHHHHHHHHHHHHH--CCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCc
Confidence            22  459999999999999999999999  77999999999999987   78999999999865       345789999


Q ss_pred             ccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          151 TRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       151 ~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +|||+  +.+++.          +++|++|..||......+
T Consensus       200 ~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~  240 (327)
T 3lm5_A          200 LAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQE  240 (327)
T ss_dssp             CCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             cCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH
Confidence            99997  333333          699999999998765543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.96  E-value=2e-28  Score=209.58  Aligned_cols=160  Identities=21%  Similarity=0.217  Sum_probs=130.8

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||||++....     ...+.+.+|+.+|..++||||+++++++.+.     .+|+||||+++++|.+++.....  .
T Consensus       208 ~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~iv~e~~~~gsL~~~l~~~~~--~  275 (452)
T 1fmk_A          208 TTRVAIKTLKPGT-----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE-----PIYIVTEYMSKGSLLDFLKGETG--K  275 (452)
T ss_dssp             TEEEEEEECCTTS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----SCEEEECCCTTCBHHHHHSHHHH--T
T ss_pred             CceEEEEEeccCC-----CCHHHHHHHHHHHHhCCCCCEeeEEEEEcCC-----ceEEEehhhcCCCHHHHHHhcCC--C
Confidence            4679999997432     1235689999999999999999999998652     47999999999999999986532  4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc-
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY-  155 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~-  155 (218)
                      .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....++..|+|||+ 
T Consensus       276 ~~~~~~~~~i~~qi~~~l~~LH~--~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~  353 (452)
T 1fmk_A          276 YLRLPQLVDMAAQIASGMAYVER--MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAA  353 (452)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHH
Confidence            58999999999999999999999  7799999999999999999999999999865         23345678999996 


Q ss_pred             -CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 -GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 -~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                       +..++.          +++|++ |+.||.+....+
T Consensus       354 ~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~  389 (452)
T 1fmk_A          354 LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE  389 (452)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH
T ss_pred             hcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH
Confidence             233333          689999 999998765543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=2.8e-28  Score=201.69  Aligned_cols=168  Identities=16%  Similarity=0.223  Sum_probs=133.3

Q ss_pred             CCCCCcEEEEEEeecccccc-cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKN-FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~-~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++....... .......+.+|+.++..++||||+++++++.+..    .+++||||++ ++|.+++...
T Consensus        31 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~  105 (346)
T 1ua2_A           31 DKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS----NISLVFDFME-TDLEVIIKDN  105 (346)
T ss_dssp             CSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT----CCEEEEECCS-EEHHHHHTTC
T ss_pred             ECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC----ceEEEEEcCC-CCHHHHHHhc
Confidence            56789999999997532211 1122346789999999999999999999997644    5899999997 5999988764


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .   ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..        ....+|+.|+|
T Consensus       106 ~---~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a  180 (346)
T 1ua2_A          106 S---LVLTPSHIKAYMLMTLQGLEYLHQ--HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRA  180 (346)
T ss_dssp             C---SSCCSSHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCC
T ss_pred             C---cCCCHHHHHHHHHHHHHHHHHHHH--CCEECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccC
Confidence            3   358889999999999999999999  7799999999999999999999999998864        34578999999


Q ss_pred             cccC--C-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYG--R-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~--~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+.  . .++.          +++|++|..||.+....+
T Consensus       181 PE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~  220 (346)
T 1ua2_A          181 PELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD  220 (346)
T ss_dssp             HHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             chHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH
Confidence            9973  2 2333          699999999998765543

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.96  E-value=3e-28  Score=200.03  Aligned_cols=164  Identities=19%  Similarity=0.240  Sum_probs=134.2

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc-
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN-   83 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-   83 (218)
                      +..||+|++...   ........+.+|+.++..+ +||||+++++++...+    .+++||||+++++|.+++...... 
T Consensus        76 ~~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~----~~~lv~e~~~~g~L~~~l~~~~~~~  148 (333)
T 2i1m_A           76 VLKVAVKMLKST---AHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG----PVLVITEYCCYGDLLNFLRRKSRVL  148 (333)
T ss_dssp             CCEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTEEHHHHHHHHHHHH
T ss_pred             hhHHHHHhcccc---cChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC----ceEEEEecCCCCcHHHHHHHhcccc
Confidence            357999999743   2244567889999999999 8999999999997654    589999999999999999865321 


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccC
Q psy238           84 ---------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IEN  144 (218)
Q Consensus        84 ---------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~  144 (218)
                               ...+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ...
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  226 (333)
T 2i1m_A          149 ETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS--KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNA  226 (333)
T ss_dssp             SCC-------CCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSC
T ss_pred             cccccccccccccCHHHHHHHHHHHHHHHHHHhc--CCcccCCcccceEEECCCCeEEECccccccccccccceeecCCC
Confidence                     2358999999999999999999999  7799999999999999999999999999864          234


Q ss_pred             CCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          145 KKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       145 ~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      .+|+.|+|||+  +..++.          +++|++ |..||.+....
T Consensus       227 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~  273 (333)
T 2i1m_A          227 RLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN  273 (333)
T ss_dssp             EECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS
T ss_pred             CCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh
Confidence            45678999996  333333          688998 99999765543

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.96  E-value=1.8e-28  Score=200.69  Aligned_cols=166  Identities=17%  Similarity=0.211  Sum_probs=131.3

Q ss_pred             CCCCCcEEEEEEeeccccc----ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERK----NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~----~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      +..+|..||||++......    ........+.+|+.++..++||||+++++++...     .+|+||||+++++|.+++
T Consensus        31 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~lv~e~~~~~~L~~~~  105 (322)
T 2ycf_A           31 ERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-----DYYIVLELMEGGELFDKV  105 (322)
T ss_dssp             ETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS-----SEEEEEECCTTEETHHHH
T ss_pred             EcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC-----ceEEEEecCCCCcHHHHH
Confidence            4568899999999753211    1112234578899999999999999999998653     289999999999999998


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC---cEEEeecCcccc-------ccCCCc
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG---LVKIGCDTYTHT-------IENKKY  147 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~---~~ki~dfg~~~~-------~~~~~t  147 (218)
                      ...    ..+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++   .++|+|||++..       ....||
T Consensus       106 ~~~----~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt  179 (322)
T 2ycf_A          106 VGN----KRLKEATCKLYFYQMLLAVQYLHE--NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGT  179 (322)
T ss_dssp             STT----CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSC
T ss_pred             hcc----CCCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCC
Confidence            754    359999999999999999999999  7799999999999998765   499999999875       234689


Q ss_pred             ccccccccC-----CCCch----------hhhhhhCCCCCCcchhh
Q psy238          148 LSATRQTYG-----RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       148 ~~y~aPE~~-----~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +.|+|||+.     ..++.          +|++++|..||......
T Consensus       180 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  225 (322)
T 2ycf_A          180 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ  225 (322)
T ss_dssp             CTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS
T ss_pred             cCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH
Confidence            999999972     23332          68999999999765443

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.95  E-value=3.6e-28  Score=200.98  Aligned_cols=165  Identities=12%  Similarity=0.103  Sum_probs=133.7

Q ss_pred             CCcEEEEEEeecccccccH-------HHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHH
Q psy238            5 EGVEVVWNEVQFSERKNFK-------AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~-------~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      ++..||||++.........       .....+.+|+.++..+.||||+++++++.....+...+|+||||+ +++|.+++
T Consensus        64 ~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l  142 (345)
T 2v62_A           64 KDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKIS  142 (345)
T ss_dssp             GGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHC
T ss_pred             ccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecccccccCCCcEEEEEEecc-CCCHHHHH
Confidence            7889999999854211100       011245678889999999999999999987544456799999999 89999999


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC--cEEEeecCcccc--------------
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG--LVKIGCDTYTHT--------------  141 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~--~~ki~dfg~~~~--------------  141 (218)
                      ....    .+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++  .++|+|||++..              
T Consensus       143 ~~~~----~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~  216 (345)
T 2v62_A          143 GQNG----TFKKSTVLQLGIRMLDVLEYIHE--NEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENP  216 (345)
T ss_dssp             BGGG----BCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCG
T ss_pred             HhcC----CCCHHHHHHHHHHHHHHHHHHHh--CCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhcc
Confidence            8654    49999999999999999999999  7799999999999999887  999999999853              


Q ss_pred             -ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcch
Q psy238          142 -IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       142 -~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                       ....||+.|+|||+  +..++.          +|+|++|..||....
T Consensus       217 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~  264 (345)
T 2v62_A          217 RKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNL  264 (345)
T ss_dssp             GGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGT
T ss_pred             ccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence             34578999999997  333333          799999999997543

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.95  E-value=4.8e-28  Score=194.14  Aligned_cols=161  Identities=22%  Similarity=0.351  Sum_probs=132.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC------------CCCCeEEEEEeccC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH------------NDKPRVIFITEYMS   69 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~------------~~~~~~~lv~e~~~   69 (218)
                      +..+|..||||++....        ..+.+|+.++..++||||+++++++....            .....+++||||++
T Consensus        32 ~~~~~~~vavK~~~~~~--------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~  103 (284)
T 2a19_B           32 HRIDGKTYVIKRVKYNN--------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCD  103 (284)
T ss_dssp             ETTTCCEEEEEEEECCS--------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCC
T ss_pred             EcCCCeEEEEEEecccc--------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccC
Confidence            34679999999997431        24668999999999999999999875411            11345899999999


Q ss_pred             CCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------c
Q psy238           70 SGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------I  142 (218)
Q Consensus        70 ~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~  142 (218)
                      +++|.+++.....  ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..       .
T Consensus       104 ~~~L~~~l~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  179 (284)
T 2a19_B          104 KGTLEQWIEKRRG--EKLDKVLALELFEQITKGVDYIHS--KKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRT  179 (284)
T ss_dssp             SCBHHHHHHHGGG--SCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSCCC
T ss_pred             CCCHHHHHhhccC--CCCCHHHHHHHHHHHHHHHHHHHh--CCeeeccCCHHHEEEcCCCCEEECcchhheecccccccc
Confidence            9999999987543  459999999999999999999999  7799999999999999999999999998765       3


Q ss_pred             cCCCccccccccc--CCCCch----------hhhhhhCCCCCCc
Q psy238          143 ENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       143 ~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~  174 (218)
                      ...+|+.|+|||+  +..++.          +++|++|..|+..
T Consensus       180 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~  223 (284)
T 2a19_B          180 RSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFE  223 (284)
T ss_dssp             CCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHH
T ss_pred             ccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchh
Confidence            4568999999997  333333          6889999988753

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.95  E-value=6.8e-28  Score=197.66  Aligned_cols=169  Identities=15%  Similarity=0.160  Sum_probs=134.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++..   .........+.+|+.++..++||||+++++++....    .+|+||||+++++|.+++....
T Consensus        56 ~~~~~~~vavK~~~~---~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  128 (327)
T 2yfx_A           56 NDPSPLQVAVKTLPE---VCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL----PRFILMELMAGGDLKSFLRETR  128 (327)
T ss_dssp             ----CCEEEEEECCS---SCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTEEHHHHHHHTS
T ss_pred             CCCccceEEEEEecc---ccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC----CcEEEEecCCCCcHHHHHHhhc
Confidence            346788999999963   223455667889999999999999999999997654    4799999999999999998764


Q ss_pred             cc---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---CCcEEEeecCcccc----------ccCC
Q psy238           82 RN---VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---NGLVKIGCDTYTHT----------IENK  145 (218)
Q Consensus        82 ~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~~~~ki~dfg~~~~----------~~~~  145 (218)
                      ..   ...+++..++.++.|++.||.|||+  .+|+||||+|+|||++.   +..++|+|||++..          ....
T Consensus       129 ~~~~~~~~~~~~~~~~i~~qi~~al~~LH~--~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~  206 (327)
T 2yfx_A          129 PRPSQPSSLAMLDLLHVARDIACGCQYLEE--NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAM  206 (327)
T ss_dssp             CCSSSTTSCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGG
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHHhh--CCeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcC
Confidence            21   1348899999999999999999999  77999999999999984   45699999998763          2345


Q ss_pred             Cccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          146 KYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       146 ~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      +++.|+|||+  +..++.          +++|++ |..||......+
T Consensus       207 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~  253 (327)
T 2yfx_A          207 LPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE  253 (327)
T ss_dssp             SCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred             CCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHH
Confidence            6889999997  333333          688998 999998765443

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.95  E-value=5.6e-28  Score=201.80  Aligned_cols=167  Identities=13%  Similarity=0.123  Sum_probs=136.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCC--CCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND--KPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||++...  .........+.+|+.++..++||||+++++++......  ...+|+||+|+. ++|.+++. 
T Consensus        63 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-  138 (371)
T 4exu_A           63 DKRSGEKVAIKKLSRP--FQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMG-  138 (371)
T ss_dssp             ETTTTEEEEEEEECST--TSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHHHHTT-
T ss_pred             ECCCCCEEEEEEeccc--ccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEEcccc-ccHHHHhh-
Confidence            5678999999999743  23355667889999999999999999999999765431  123499999996 68888773 


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                           ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..     ....+|+.|+|||
T Consensus       139 -----~~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE  211 (371)
T 4exu_A          139 -----MEFSEEKIQYLVYQMLKGLKYIHS--AGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPE  211 (371)
T ss_dssp             -----SCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTCCEEECSTTCC--------CTTCCCTTSCHH
T ss_pred             -----cCCCHHHHHHHHHHHHHHHHHHHH--CCCcCCCcCHHHeEECCCCCEEEEecCcccccccCcCCcccCccccCHH
Confidence                 239999999999999999999999  7799999999999999999999999999875     4567899999999


Q ss_pred             cC---CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          155 YG---RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       155 ~~---~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +.   ..++.          +++|++|..||.+....+
T Consensus       212 ~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~  249 (371)
T 4exu_A          212 VILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD  249 (371)
T ss_dssp             HHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             HhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH
Confidence            73   23332          699999999998765443

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=193.86  Aligned_cols=166  Identities=19%  Similarity=0.227  Sum_probs=135.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC----------CCCCeEEEEEeccCCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH----------NDKPRVIFITEYMSSG   71 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~----------~~~~~~~lv~e~~~~~   71 (218)
                      +..+|..||||++...    .......+.+|+.++..++||||+++++++...+          .....+|+||||+. +
T Consensus        32 ~~~~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~  106 (320)
T 2i6l_A           32 DNDCDKRVAIKKIVLT----DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-T  106 (320)
T ss_dssp             ETTTTEEEEEEEEECC----SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS-E
T ss_pred             ECCCCeEEEEEEEecC----ChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccCceeEEeeccC-C
Confidence            4567999999999743    2456678899999999999999999999885432          23357899999997 6


Q ss_pred             CHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe-cCCcEEEeecCcccc---------
Q psy238           72 SLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ-HNGLVKIGCDTYTHT---------  141 (218)
Q Consensus        72 sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~-~~~~~ki~dfg~~~~---------  141 (218)
                      +|.+++..     .++++..++.++.|++.||.|||+  .+|+|+||+|+|||++ .++.++|+|||++..         
T Consensus       107 ~L~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~  179 (320)
T 2i6l_A          107 DLANVLEQ-----GPLLEEHARLFMYQLLRGLKYIHS--ANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKG  179 (320)
T ss_dssp             EHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------
T ss_pred             CHHHHhhc-----CCccHHHHHHHHHHHHHHHHHHHh--CCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCccccc
Confidence            99999864     348999999999999999999999  7799999999999998 567999999998864         


Q ss_pred             --ccCCCcccccccccC---CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          142 --IENKKYLSATRQTYG---RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       142 --~~~~~t~~y~aPE~~---~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                        ....+|..|+|||+.   ..++.          ++++++|..||.+....+
T Consensus       180 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~  232 (320)
T 2i6l_A          180 HLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE  232 (320)
T ss_dssp             CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             ccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHH
Confidence              234568889999962   33333          699999999998766543

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.95  E-value=5.8e-28  Score=198.45  Aligned_cols=165  Identities=17%  Similarity=0.262  Sum_probs=130.9

Q ss_pred             CCCCcE----EEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHH
Q psy238            3 TEEGVE----VVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         3 ~~~g~~----vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      ..+|..    ||+|.+...   ........+.+|+.++..++||||+++++++....     .++|++++.+++|.+++.
T Consensus        37 ~~~~~~~~~kv~iK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~~v~~~~~~g~L~~~l~  108 (327)
T 3lzb_A           37 IPEGEKVKIPVAIKELREA---TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-----VQLITQLMPFGCLLDYVR  108 (327)
T ss_dssp             CCTTCSCCEEEEEEEECCC---SSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-----EEEEECCCSSCBHHHHHH
T ss_pred             cCCCceEEEEEEEEeeccc---cCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-----ceEEEEecCCCcHHHHHH
Confidence            345554    477766532   12334567889999999999999999999998643     789999999999999998


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYL  148 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~  148 (218)
                      ...   ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....+|+
T Consensus       109 ~~~---~~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~  183 (327)
T 3lzb_A          109 EHK---DNIGSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI  183 (327)
T ss_dssp             HTT---TCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEEEETTEEEECCTTC----------------CCCG
T ss_pred             hcC---CCCCHHHHHHHHHHHHHHHHHHhh--CCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccc
Confidence            753   359999999999999999999999  7799999999999999999999999999864          2345577


Q ss_pred             ccccccc--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          149 SATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       149 ~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      .|+|||+  +..++.          +|++++ |..||.+....+.
T Consensus       184 ~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~  228 (327)
T 3lzb_A          184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI  228 (327)
T ss_dssp             GGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH
T ss_pred             cccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Confidence            8999996  333333          689999 9999987765553

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.95  E-value=2e-28  Score=206.65  Aligned_cols=165  Identities=17%  Similarity=0.230  Sum_probs=129.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++....      ....+.+|+.+|..++||||+++++++....  ...+|+||||+. ++|.+++....
T Consensus        44 ~~~~~~~vaiK~~~~~~------~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--~~~~~lv~e~~~-~~l~~~~~~~~  114 (405)
T 3rgf_A           44 DGKDDKDYALKQIEGTG------ISMSACREIALLRELKHPNVISLQKVFLSHA--DRKVWLLFDYAE-HDLWHIIKFHR  114 (405)
T ss_dssp             SSSCCCCEEEEECSSSS------CCHHHHHHHHHHHHCCCTTBCCCCEEEEETT--TTEEEEEEECCS-EEHHHHHHHHH
T ss_pred             cCCCCeEEEEEEECCCC------CCHHHHHHHHHHHhcCCCCeeeEeeEEecCC--CCeEEEEEeCCC-CCHHHHHHHhc
Confidence            34578899999997431      1235778999999999999999999996533  347999999996 69998887543


Q ss_pred             cc-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE----ecCCcEEEeecCcccc-----------
Q psy238           82 RN-----VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI----QHNGLVKIGCDTYTHT-----------  141 (218)
Q Consensus        82 ~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl----~~~~~~ki~dfg~~~~-----------  141 (218)
                      ..     ...+++..++.++.||+.||.|||+  .+|+||||+|+|||+    +.++.++|+|||++..           
T Consensus       115 ~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~--~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~  192 (405)
T 3rgf_A          115 ASKANKKPVQLPRGMVKSLLYQILDGIHYLHA--NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADL  192 (405)
T ss_dssp             HHC-------CCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC------------
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHHHh--CCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccC
Confidence            21     1248999999999999999999999  779999999999999    6779999999999864           


Q ss_pred             ccCCCcccccccccCC---CCch----------hhhhhhCCCCCCcchh
Q psy238          142 IENKKYLSATRQTYGR---PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       142 ~~~~~t~~y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ....||+.|+|||+..   .++.          +|+|++|..||.+...
T Consensus       193 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~  241 (405)
T 3rgf_A          193 DPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQE  241 (405)
T ss_dssp             ----CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC-
T ss_pred             CCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccc
Confidence            3457899999999732   2333          6999999999976543

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.95  E-value=8.2e-29  Score=203.16  Aligned_cols=158  Identities=15%  Similarity=0.230  Sum_probs=126.8

Q ss_pred             EEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCCC
Q psy238            9 VVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP   88 (218)
Q Consensus         9 vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~   88 (218)
                      ||+|.+....   .......+.+|+.++..++||||+++++++...     .+++||+|+++++|.+++....   ..++
T Consensus        45 v~~K~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~v~e~~~~~~L~~~l~~~~---~~~~  113 (325)
T 3kex_A           45 VCIKVIEDKS---GRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGS-----SLQLVTQYLPLGSLLDHVRQHR---GALG  113 (325)
T ss_dssp             EEEEEECCTT---SCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBS-----SEEEEEECCTTCBSHHHHHSSG---GGSC
T ss_pred             EEEEeccccc---cHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC-----ccEEEEEeCCCCCHHHHHHHcc---ccCC
Confidence            7788775321   122234567889999999999999999998643     4899999999999999998653   3488


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc--C
Q psy238           89 LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY--G  156 (218)
Q Consensus        89 ~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~--~  156 (218)
                      +..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..          ....++..|+|||+  +
T Consensus       114 ~~~~~~~~~qi~~~l~~lH~--~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  191 (325)
T 3kex_A          114 PQLLLNWGVQIAKGMYYLEE--HGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHF  191 (325)
T ss_dssp             TTHHHHHHHHHHHHHHHHHH--TTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh--CCCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhcc
Confidence            89999999999999999999  7799999999999999999999999999864          33456779999997  2


Q ss_pred             CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          157 RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       157 ~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ..++.          +|++++ |..||.+....+
T Consensus       192 ~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~  225 (325)
T 3kex_A          192 GKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAE  225 (325)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTH
T ss_pred             CCCChhhHhHHhHHHHHHHHhCCCCCccccCHHH
Confidence            33333          699999 999998765444

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.95  E-value=1.7e-27  Score=192.63  Aligned_cols=162  Identities=12%  Similarity=0.167  Sum_probs=130.3

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||+|.+..   .........+.+|+.+++.++||||+++++++....   ...++||||+++++|.+++....   .
T Consensus        53 ~~~~avk~~~~---~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~~~v~e~~~~~~L~~~l~~~~---~  123 (298)
T 3f66_A           53 KIHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE---GSPLVVLPYMKHGDLRNFIRNET---H  123 (298)
T ss_dssp             CEEEEEEEETT---CCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSS---SCCEEEEECCTTCBHHHHHHCTT---C
T ss_pred             eeEEEEEeccc---CCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCC---CceEEEEeCCCCCCHHHHHHhcc---c
Confidence            34689998874   233456678899999999999999999999875533   35899999999999999997643   4


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYLSATRQ  153 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~~y~aP  153 (218)
                      .+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..            ....+|+.|+||
T Consensus       124 ~~~~~~~~~i~~ql~~~l~~lH~--~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aP  201 (298)
T 3f66_A          124 NPTVKDLIGFGLQVAKGMKYLAS--KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMAL  201 (298)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccCh
Confidence            58999999999999999999999  7799999999999999999999999998863            344567889999


Q ss_pred             cc--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          154 TY--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      |+  +..++.          ++++++ |..||......
T Consensus       202 E~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~  239 (298)
T 3f66_A          202 ESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF  239 (298)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTT
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHH
Confidence            97  333333          688999 55566554433

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.95  E-value=8.6e-28  Score=196.95  Aligned_cols=166  Identities=21%  Similarity=0.276  Sum_probs=122.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecC----CCCCCeEEEEEeccCCCCHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDT----HNDKPRVIFITEYMSSGSLKQF   76 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~----~~~~~~~~lv~e~~~~~sL~~~   76 (218)
                      +..+|..||||++..    ........+.+|+.++..+. ||||+++++++...    ......+++||+|+. |+|.++
T Consensus        49 ~~~~~~~vavK~~~~----~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~  123 (337)
T 3ll6_A           49 DVGSGREYALKRLLS----NEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQLVEF  123 (337)
T ss_dssp             ETTTCCEEEEEEEEE----SSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EEHHHH
T ss_pred             ECCCCcEEEEEEecC----CchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEEEecC-CCHHHH
Confidence            356899999999863    23455677889999999995 99999999998532    123456899999995 799999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--cccCCCCCCcEEEecCCcEEEeecCccccc------------
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPP--IIHGNLTCDTIFIQHNGLVKIGCDTYTHTI------------  142 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~--iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~------------  142 (218)
                      +..... ...+++..++.++.||+.||.|||+  .+  |+|+||+|+|||++.++.++|+|||++...            
T Consensus       124 l~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~--~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  200 (337)
T 3ll6_A          124 LKKMES-RGPLSCDTVLKIFYQTCRAVQHMHR--QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQR  200 (337)
T ss_dssp             HHHHHT-TCSCCHHHHHHHHHHHHHHHHHHHT--SSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC--------
T ss_pred             HHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHh--CCCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccc
Confidence            876432 2459999999999999999999999  77  999999999999999999999999998652            


Q ss_pred             --------cCCCcccccccccCC-----CCch----------hhhhhhCCCCCCcc
Q psy238          143 --------ENKKYLSATRQTYGR-----PISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       143 --------~~~~t~~y~aPE~~~-----~~~~----------~~ei~tg~~p~~~~  175 (218)
                              ...+|+.|+|||+..     .++.          +++|++|..||...
T Consensus       201 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  256 (337)
T 3ll6_A          201 RALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDG  256 (337)
T ss_dssp             -----------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             cccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcch
Confidence                    345899999999741     2222          69999999999654

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.95  E-value=9.9e-28  Score=201.70  Aligned_cols=158  Identities=15%  Similarity=0.183  Sum_probs=131.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC--CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE--HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~--hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      +|..||||++....  ........+.+|+.+|..+.  ||||+++++++....    .+|+|||+ .+++|.+++.... 
T Consensus        79 ~~~~vaiK~~~~~~--~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~----~~~lv~E~-~~~~L~~~l~~~~-  150 (390)
T 2zmd_A           79 KKQIYAIKYVNLEE--ADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ----YIYMVMEC-GNIDLNSWLKKKK-  150 (390)
T ss_dssp             TCCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----EEEEEEEC-CSEEHHHHHHHCS-
T ss_pred             CCCEEEEEEEeccc--ccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCC----EEEEEEec-CCCCHHHHHHhcC-
Confidence            48899999997542  23456678999999999996  599999999987644    59999995 5789999998653 


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCcccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATR  152 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~a  152 (218)
                         .+++..++.++.||+.||.|||+  .+|+||||+|+|||++ ++.++|+|||++..          ....||+.|+|
T Consensus       151 ---~~~~~~~~~i~~qi~~aL~~lH~--~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~a  224 (390)
T 2zmd_A          151 ---SIDPWERKSYWKNMLEAVHTIHQ--HGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMP  224 (390)
T ss_dssp             ---SCCHHHHHHHHHHHHHHHHHHHT--TTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCC
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHH--CCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccC
Confidence               48999999999999999999999  7799999999999995 68999999999864          24579999999


Q ss_pred             cccCC-------------CCch----------hhhhhhCCCCCCcch
Q psy238          153 QTYGR-------------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       153 PE~~~-------------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ||+..             .++.          +|+|++|..||....
T Consensus       225 PE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~  271 (390)
T 2zmd_A          225 PEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII  271 (390)
T ss_dssp             HHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             hHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh
Confidence            99732             2222          699999999997643

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.95  E-value=2e-29  Score=207.67  Aligned_cols=163  Identities=12%  Similarity=0.067  Sum_probs=119.7

Q ss_pred             CCcEEEEEEeeccccc----ccHHHHHHHHHHHHHhhcCC---------CCcccceeee-----------------eecC
Q psy238            5 EGVEVVWNEVQFSERK----NFKAQEEKIQQVFENLTQLE---------HPNIVKFHRY-----------------WTDT   54 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~----~~~~~~~~~~~ei~~l~~l~---------hp~iv~l~~~-----------------~~~~   54 (218)
                      +|..||||++......    ........+.+|+.+++.++         ||||+.+.++                 |.+.
T Consensus        42 ~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~  121 (336)
T 2vuw_A           42 DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNST  121 (336)
T ss_dssp             TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeEecCCCcHHHHHHHHHHhhh
Confidence            6899999999864321    11223356777888777765         5555555554                 3321


Q ss_pred             C---------CCCCeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCcccCCCCCCcEE
Q psy238           55 H---------NDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLH-SCSPPIIHGNLTCDTIF  124 (218)
Q Consensus        55 ~---------~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH-~~~~~iiH~dlkp~NiL  124 (218)
                      .         .+...+|+||||+++|++.+.+..     ..+++..++.++.||+.||.||| +  .+|+||||||+|||
T Consensus       122 ~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-----~~~~~~~~~~i~~qi~~aL~~lH~~--~~ivHrDlKp~NIL  194 (336)
T 2vuw_A          122 KGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-----KLSSLATAKSILHQLTASLAVAEAS--LRFEHRDLHWGNVL  194 (336)
T ss_dssp             TCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-----TCCCHHHHHHHHHHHHHHHHHHHHH--HCCBCSCCCGGGEE
T ss_pred             ccccccCccccccCeEEEEEEecCCCccHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHh--CCEeECCCCHHHEE
Confidence            0         013579999999998876666533     34899999999999999999999 8  66999999999999


Q ss_pred             EecCC--------------------cEEEeecCcccc---ccCCCcccccccccCC-CCchhhh-----------hhhCC
Q psy238          125 IQHNG--------------------LVKIGCDTYTHT---IENKKYLSATRQTYGR-PISGQYE-----------IVTKT  169 (218)
Q Consensus       125 l~~~~--------------------~~ki~dfg~~~~---~~~~~t~~y~aPE~~~-~~~~~~e-----------i~tg~  169 (218)
                      ++.++                    .++|+|||++..   ....||+.|+|||+.. ..+...|           +++|.
T Consensus       195 l~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~g~~~~~~Diwsl~~~~~~~~~~g~  274 (336)
T 2vuw_A          195 LKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEY  274 (336)
T ss_dssp             EEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGCCCSSHHHHHHHHHHHHHTTCTTSC
T ss_pred             EeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhcCCCccceehhhhhCCCCccccccc
Confidence            99887                    999999999976   4558899999999832 2244444           44477


Q ss_pred             CCCCc
Q psy238          170 NNVTE  174 (218)
Q Consensus       170 ~p~~~  174 (218)
                      .||..
T Consensus       275 ~p~~~  279 (336)
T 2vuw_A          275 HPYSN  279 (336)
T ss_dssp             CTHHH
T ss_pred             CCCcc
Confidence            77743

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.95  E-value=3.9e-28  Score=194.62  Aligned_cols=162  Identities=19%  Similarity=0.266  Sum_probs=129.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||++...      ...+.+.+|+.++..++||||+++++++....   ..+++||||+++++|.+++.....  
T Consensus        43 ~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~~lv~e~~~~~~L~~~l~~~~~--  111 (278)
T 1byg_A           43 RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK---GGLYIVTEYMAKGSLVDYLRSRGR--  111 (278)
T ss_dssp             TTEEEEEEECCCC------C--HHHHHTHHHHTTCCCTTBCCEEEEECCC-----CCEEEECCCTTEEHHHHHHHHHH--
T ss_pred             cCCEEEEEEecch------hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC---CceEEEEecCCCCCHHHHHHhccc--
Confidence            5789999998742      13467889999999999999999999876533   358999999999999999987542  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCccccccccc--CC
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTY--GR  157 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~--~~  157 (218)
                      ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..     ....+++.|+|||+  +.
T Consensus       112 ~~~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~  189 (278)
T 1byg_A          112 SVLGGDCLLKFSLDVCEAMEYLEG--NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK  189 (278)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHh--CCccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCHHHhCCC
Confidence            238899999999999999999999  7799999999999999999999999998865     34567889999997  23


Q ss_pred             CCch----------hhhhhh-CCCCCCcchhhh
Q psy238          158 PISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       158 ~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      .++.          ++++++ |..||.....++
T Consensus       190 ~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~  222 (278)
T 1byg_A          190 KFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD  222 (278)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG
T ss_pred             CCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence            3333          688998 999998765443

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.95  E-value=2e-27  Score=197.38  Aligned_cols=169  Identities=15%  Similarity=0.168  Sum_probs=133.1

Q ss_pred             CCcEEEEEEeecccc-------cccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHH
Q psy238            5 EGVEVVWNEVQFSER-------KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQF   76 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~-------~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~   76 (218)
                      +|..||||++.....       .........+.+|+.++..++||||+++++++.... .....+|+||||+. ++|.++
T Consensus        45 ~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~  123 (362)
T 3pg1_A           45 EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQV  123 (362)
T ss_dssp             TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHH
T ss_pred             CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCCCcceEEEEEccCC-CCHHHH
Confidence            488999999964321       122344578999999999999999999999986643 33457899999996 699998


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccc
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLS  149 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~  149 (218)
                      +....   ..+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..       ....+|..
T Consensus       124 ~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~  198 (362)
T 3pg1_A          124 IHDQR---IVISPQHIQYFMYHILLGLHVLHE--AGVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRW  198 (362)
T ss_dssp             HHCTT---SCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTCCEEECCTTC---------------CGG
T ss_pred             HHhcc---cCCCHHHHHHHHHHHHHHHHHHHH--CcCEecCCChHHEEEcCCCCEEEEecCcccccccccccceecccce
Confidence            87543   459999999999999999999999  7799999999999999999999999999864       44578899


Q ss_pred             ccccccC---CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          150 ATRQTYG---RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       150 y~aPE~~---~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+|||+.   ..++.          +++|++|..||.+....+
T Consensus       199 y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~  241 (362)
T 3pg1_A          199 YRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYN  241 (362)
T ss_dssp             GCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             ecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHH
Confidence            9999962   22333          699999999998765444

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.95  E-value=1.8e-27  Score=196.80  Aligned_cols=166  Identities=16%  Similarity=0.141  Sum_probs=136.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...   ........+.+|+.++..++||||+++++++.... .....+|+||||+. ++|.+++.. 
T Consensus        32 ~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~-  106 (353)
T 2b9h_A           32 HKPTGEIVAIKKIEPF---DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRVIST-  106 (353)
T ss_dssp             ETTTTEEEEEEEECCC---SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHHHHH-
T ss_pred             ECCCCcEEEEEeeccc---ccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHHHhh-
Confidence            4568999999999642   33456677889999999999999999999876532 22356899999996 699999875 


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccc------------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI------------------  142 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~------------------  142 (218)
                          ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++...                  
T Consensus       107 ----~~~~~~~~~~~~~qi~~~L~~LH~--~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~  180 (353)
T 2b9h_A          107 ----QMLSDDHIQYFIYQTLRAVKVLHG--SNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMV  180 (353)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------C
T ss_pred             ----cCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchh
Confidence                249999999999999999999999  77999999999999999999999999988641                  


Q ss_pred             cCCCccccccccc--C-CCCch----------hhhhhhCCCCCCcchhh
Q psy238          143 ENKKYLSATRQTY--G-RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       143 ~~~~t~~y~aPE~--~-~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ...||+.|+|||+  + ..++.          +++|++|..||.+....
T Consensus       181 ~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  229 (353)
T 2b9h_A          181 EFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYR  229 (353)
T ss_dssp             CCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             hccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcH
Confidence            2367999999996  2 33333          69999999999876543

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.95  E-value=4.8e-28  Score=194.05  Aligned_cols=161  Identities=20%  Similarity=0.210  Sum_probs=132.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||||.+....     .....+.+|+.++..++||||+++++++...     .+++||||+++++|.+++.....  
T Consensus        36 ~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~v~e~~~~~~L~~~l~~~~~--  103 (279)
T 1qpc_A           36 GHTKVAVKSLKQGS-----MSPDAFLAEANLMKQLQHQRLVRLYAVVTQE-----PIYIITEYMENGSLVDFLKTPSG--  103 (279)
T ss_dssp             TTEEEEEEEECTTS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----SCEEEEECCTTCBHHHHTTSHHH--
T ss_pred             CCcEEEEEEecCCc-----ccHHHHHHHHHHHHhCCCcCcceEEEEEcCC-----CcEEEEecCCCCCHHHHHhcCCC--
Confidence            46789999997432     1235688999999999999999999998643     37999999999999999976532  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..         ....++..|+|||+
T Consensus       104 ~~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  181 (279)
T 1qpc_A          104 IKLTINKLLDMAAQIAEGMAFIEE--RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEA  181 (279)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhh
Confidence            248999999999999999999999  7799999999999999999999999999865         23345678999997


Q ss_pred             C--CCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 G--RPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 ~--~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      .  ..++.          +++|++ |..||.+....+
T Consensus       182 ~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~  218 (279)
T 1qpc_A          182 INYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE  218 (279)
T ss_dssp             HHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH
T ss_pred             hccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH
Confidence            3  22222          689999 999998765443

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=2.2e-27  Score=191.70  Aligned_cols=159  Identities=14%  Similarity=0.159  Sum_probs=130.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||+|++..   .........+.+|+.+++.++||||+++++++.+..   ...++||+|+.+++|.+++....   
T Consensus        48 ~~~~~aiK~~~~---~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~~~v~e~~~~~~L~~~~~~~~---  118 (298)
T 3pls_A           48 NRIQCAIKSLSR---ITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPE---GLPHVLLPYMCHGDLLQFIRSPQ---  118 (298)
T ss_dssp             CEEEEEEEEETT---CCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSS---SCCEEEECCCTTCBHHHHHHCTT---
T ss_pred             ceeeeeeeeccc---cccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCC---CCcEEEEecccCCCHHHHHhccc---
Confidence            344799999874   233456678899999999999999999999987644   23589999999999999997643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCcccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYLSATR  152 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~~y~a  152 (218)
                      ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..            ....++..|+|
T Consensus       119 ~~~~~~~~~~i~~qi~~~l~~LH~--~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~a  196 (298)
T 3pls_A          119 RNPTVKDLISFGLQVARGMEYLAE--QKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTA  196 (298)
T ss_dssp             CCCBHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccC
Confidence            458999999999999999999999  7799999999999999999999999998853            34566889999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCc
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~  174 (218)
                      ||..  ..++.          ++++++|..|+..
T Consensus       197 PE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~  230 (298)
T 3pls_A          197 LESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYR  230 (298)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTT
T ss_pred             hhhhccCCCChhhchhhHHHHHHHHhhCCCCCCc
Confidence            9973  23333          6889996666543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=6.7e-28  Score=201.69  Aligned_cols=161  Identities=11%  Similarity=0.165  Sum_probs=125.8

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||.+..   .........+.+|+.+++.++||||+++++++....   +..++||||+++++|.+++....   ..
T Consensus       118 ~~vavK~~~~---~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~---~~~~lv~e~~~~g~L~~~l~~~~---~~  188 (373)
T 3c1x_A          118 IHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE---GSPLVVLPYMKHGDLRNFIRNET---HN  188 (373)
T ss_dssp             EEEEEEECCS---CSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCS---SCCEEEEECCTTCBHHHHHHCTT---CC
T ss_pred             EEEEEEEcCC---CCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC---CCeEEEEECCCCCCHHHHHhhcc---cC
Confidence            4689998864   222456678999999999999999999999875533   35799999999999999997643   34


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCcccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYLSATRQT  154 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~~y~aPE  154 (218)
                      +++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..            ....+|+.|+|||
T Consensus       189 ~~~~~~~~i~~qi~~aL~~LH~--~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE  266 (373)
T 3c1x_A          189 PTVKDLIGFGLQVAKGMKFLAS--KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALE  266 (373)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH--CCEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChH
Confidence            8899999999999999999999  7799999999999999999999999999863            2345567899999


Q ss_pred             c--CCCCch----------hhhhhh-CCCCCCcchhh
Q psy238          155 Y--GRPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      +  +..++.          +|+|++ |..||......
T Consensus       267 ~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~  303 (373)
T 3c1x_A          267 SLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF  303 (373)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH
Confidence            7  333333          689999 67777665443

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.95  E-value=9.4e-28  Score=196.73  Aligned_cols=158  Identities=16%  Similarity=0.158  Sum_probs=132.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++...       ....+.+|+.++..+. ||||+++++++.+..  ....++||+|+++++|.+++.. 
T Consensus        57 ~~~~~~~vavK~~~~~-------~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~-  126 (330)
T 3nsz_A           57 NITNNEKVVVKILKPV-------KKKKIKREIKILENLRGGPNIITLADIVKDPV--SRTPALVFEHVNNTDFKQLYQT-  126 (330)
T ss_dssp             ETTTCCEEEEEEECSC-------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTT--TCCEEEEEECCCCCCHHHHGGG-
T ss_pred             ECCCCcEEEEEEeccc-------chHHHHHHHHHHHHcCCCCCEEEeeeeeccCC--CCceEEEEeccCchhHHHHHHh-
Confidence            4678999999999732       2356889999999996 999999999998643  3468999999999999998842 


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-cEEEeecCcccc-------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                            ++...++.++.||+.||.|||+  .+|+||||+|+|||++.++ .++|+|||++..       ....++..|+|
T Consensus       127 ------~~~~~~~~~~~qi~~~l~~lH~--~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~a  198 (330)
T 3nsz_A          127 ------LTDYDIRFYMYEILKALDYCHS--MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKG  198 (330)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCC
T ss_pred             ------CCHHHHHHHHHHHHHHHHHHHh--CCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccC
Confidence                  8899999999999999999999  7799999999999999776 899999999864       45678999999


Q ss_pred             cccC---CCCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYG---RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~---~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+.   ..++.          +++|++|..||.....
T Consensus       199 PE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~  236 (330)
T 3nsz_A          199 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD  236 (330)
T ss_dssp             HHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSS
T ss_pred             hhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCc
Confidence            9973   22333          6999999999965443

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.95  E-value=1.2e-27  Score=198.30  Aligned_cols=171  Identities=15%  Similarity=0.210  Sum_probs=134.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC---CCCeEEEEEeccCCCCHHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN---DKPRVIFITEYMSSGSLKQFLK   78 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~---~~~~~~lv~e~~~~~sL~~~l~   78 (218)
                      +..+|..||||++....     ........++..+..++||||++++++|.....   ....+++||||++ ++|...+.
T Consensus        44 ~~~~~~~vavK~~~~~~-----~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~  117 (360)
T 3e3p_A           44 EKSTGMSVAIKKVIQDP-----RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVP-DTLHRCCR  117 (360)
T ss_dssp             ETTTCCEEEEEEEECCT-----TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCS-CBHHHHHH
T ss_pred             ECCCCCEEEEEEEecCc-----cccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeeccc-ccHHHHHH
Confidence            45689999999986432     122345667777888899999999999876432   2234789999996 57777666


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHhh--cCCCCcccCCCCCCcEEEec-CCcEEEeecCcccc-------ccCCCcc
Q psy238           79 RTKRNVKKLPLSAWKRWCSQILSALSYLH--SCSPPIIHGNLTCDTIFIQH-NGLVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH--~~~~~iiH~dlkp~NiLl~~-~~~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      ........+++..++.++.|++.||.|||  +  .+|+||||+|+|||++. ++.++|+|||++..       ....+|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~--~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~  195 (360)
T 3e3p_A          118 NYYRRQVAPPPILIKVFLFQLIRSIGCLHLPS--VNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSR  195 (360)
T ss_dssp             HHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTT--TCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCSTTSCG
T ss_pred             HHhhcccCCCHHHHHHHHHHHHHHHHHHhCCC--CCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCcccccCCc
Confidence            54444466999999999999999999999  8  77999999999999997 89999999999865       3457899


Q ss_pred             cccccccC--CC-Cch----------hhhhhhCCCCCCcchhhhh
Q psy238          149 SATRQTYG--RP-ISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       149 ~y~aPE~~--~~-~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      .|+|||+.  .. ++.          +++|++|..||.+......
T Consensus       196 ~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~  240 (360)
T 3e3p_A          196 YYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQ  240 (360)
T ss_dssp             GGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             ceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHH
Confidence            99999963  22 333          6999999999987665443

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.95  E-value=5.1e-28  Score=211.16  Aligned_cols=160  Identities=21%  Similarity=0.217  Sum_probs=133.0

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||||++....     ...+.+.+|+.+|..++||||+++++++.+.     .+|+||||+.+++|.+++.....  .
T Consensus       291 ~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-----~~~lv~e~~~~gsL~~~l~~~~~--~  358 (535)
T 2h8h_A          291 TTRVAIKTLKPGT-----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE-----PIYIVTEYMSKGSLLDFLKGETG--K  358 (535)
T ss_dssp             TEEEEEEEECTTS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----SCEEEECCCTTEEHHHHHSHHHH--T
T ss_pred             CceEEEEEeCCCC-----CCHHHHHHHHHHHHhCCCCCEeeEEEEEeec-----cceEeeehhcCCcHHHHHhhcCC--C
Confidence            4679999998532     1235689999999999999999999998652     48999999999999999986532  3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc-
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY-  155 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~-  155 (218)
                      .+++..++.++.||+.||.|||+  ++|+||||+|+|||++.++.++|+|||++..         ....++..|+|||+ 
T Consensus       359 ~l~~~~~~~i~~qi~~~L~~LH~--~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~  436 (535)
T 2h8h_A          359 YLRLPQLVDMAAQIASGMAYVER--MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAA  436 (535)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh--CCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHh
Confidence            58999999999999999999999  7799999999999999999999999999864         23456788999996 


Q ss_pred             -CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 -GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 -~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                       +..++.          +++|++ |+.||.+....+
T Consensus       437 ~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~  472 (535)
T 2h8h_A          437 LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE  472 (535)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence             233333          689999 999998765544

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.95  E-value=4.1e-28  Score=202.49  Aligned_cols=167  Identities=13%  Similarity=0.133  Sum_probs=119.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHH---HHhhcCCCCccccee-------eeeecCCC-------------CC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVF---ENLTQLEHPNIVKFH-------RYWTDTHN-------------DK   58 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei---~~l~~l~hp~iv~l~-------~~~~~~~~-------------~~   58 (218)
                      |..+|..||||++..... ........+.+|+   .+|.. .||||++++       +++...+.             ..
T Consensus        83 ~~~~~~~vavK~~~~~~~-~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~  160 (371)
T 3q60_A           83 DVERLEDFALKVFTMGAE-NSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAV  160 (371)
T ss_dssp             ETTTTEEEEEEEEECCST-THHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEEEETTSCSSSBCSCC---CCE
T ss_pred             ECCCCceeEEEEEEeccc-ccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehheecCCCCCeeeccCCccccee
Confidence            456899999999986422 1244556777774   45555 799988855       33332221             01


Q ss_pred             CeEEEEEeccCCCCHHHHHHhhcccCCCCCHHHH------HHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEE
Q psy238           59 PRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAW------KRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVK  132 (218)
Q Consensus        59 ~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~~------~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~k  132 (218)
                      ..+|+||||++ ++|.+++.....   .++...+      +.++.||+.||.|||+  .+|+||||||+|||++.++.++
T Consensus       161 ~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~~vk~~i~~qi~~aL~~LH~--~~ivHrDikp~NIll~~~~~~k  234 (371)
T 3q60_A          161 ANYLLLMPAAS-VDLELLFSTLDF---VYVFRGDEGILALHILTAQLIRLAANLQS--KGLVHGHFTPDNLFIMPDGRLM  234 (371)
T ss_dssp             EEEEEEECCCS-EEHHHHHHHHHH---SCCCCHHHHHHHHHHHHHHHHHHHHHHHH--TTEEETTCSGGGEEECTTSCEE
T ss_pred             eeEEEEecCCC-CCHHHHHHHhcc---ccchhhhhhhhhHHHHHHHHHHHHHHHHH--CCCccCcCCHHHEEECCCCCEE
Confidence            35899999997 899999987643   2444455      6777999999999999  7799999999999999999999


Q ss_pred             EeecCcccc-----ccCCCcccccccccCC----CCch----------hhhhhhCCCCCCcch
Q psy238          133 IGCDTYTHT-----IENKKYLSATRQTYGR----PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       133 i~dfg~~~~-----~~~~~t~~y~aPE~~~----~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+|||++..     ....+|+.|+|||+..    .++.          +|+|++|+.||.+..
T Consensus       235 L~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~  297 (371)
T 3q60_A          235 LGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVT  297 (371)
T ss_dssp             ECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCC
T ss_pred             EEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcC
Confidence            999999875     2566779999999743    2333          699999999998763

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=2.3e-27  Score=194.67  Aligned_cols=137  Identities=21%  Similarity=0.221  Sum_probs=113.6

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhc--CCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQ--LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~--l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      +|..||||++...       .......|.+++..  ++||||+++++++.........+|+||||+++++|.+++...  
T Consensus        59 ~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--  129 (337)
T 3mdy_A           59 RGEKVAVKVFFTT-------EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST--  129 (337)
T ss_dssp             TTEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHHC--
T ss_pred             CCceEEEEEEecc-------ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhcc--
Confidence            5889999998632       12233445555544  499999999999887644335799999999999999999653  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCC--------CcccCCCCCCcEEEecCCcEEEeecCcccc------------c
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSP--------PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------I  142 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~--------~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~  142 (218)
                         .+++..++.++.|++.||.|||+  .        +|+||||+|+|||++.++.++|+|||++..            .
T Consensus       130 ---~~~~~~~~~i~~~i~~~l~~lH~--~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  204 (337)
T 3mdy_A          130 ---TLDAKSMLKLAYSSVSGLCHLHT--EIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPN  204 (337)
T ss_dssp             ---CBCHHHHHHHHHHHHHHHHHHHS--CBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CC
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHH--hhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCC
Confidence               48999999999999999999999  5        799999999999999999999999999854            2


Q ss_pred             cCCCccccccccc
Q psy238          143 ENKKYLSATRQTY  155 (218)
Q Consensus       143 ~~~~t~~y~aPE~  155 (218)
                      ...||+.|+|||+
T Consensus       205 ~~~gt~~y~aPE~  217 (337)
T 3mdy_A          205 TRVGTKRYMPPEV  217 (337)
T ss_dssp             SSCSCGGGCCHHH
T ss_pred             CCccCcceeChhh
Confidence            4578999999997

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.95  E-value=1.7e-27  Score=191.72  Aligned_cols=161  Identities=19%  Similarity=0.235  Sum_probs=128.2

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||++..... ........+.+|+.++..++||||+++++++....     .++||+|+++++|.+++....   ..
T Consensus        47 ~~vavK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~v~e~~~~~~L~~~l~~~~---~~  117 (291)
T 1u46_A           47 VSVAVKCLKPDVL-SQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-----MKMVTELAPLGSLLDRLRKHQ---GH  117 (291)
T ss_dssp             EEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-----CEEEEECCTTCBHHHHHHHHG---GG
T ss_pred             eEEEEEEEccCcc-CCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-----ceeeEecccCCCHHHHHHhcc---CC
Confidence            3699999874321 12345678899999999999999999999987643     799999999999999998753   34


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSATRQTY  155 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~aPE~  155 (218)
                      +++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..           ....+|+.|+|||+
T Consensus       118 ~~~~~~~~~~~~i~~~l~~lH~--~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  195 (291)
T 1u46_A          118 FLLGTLSRYAVQVAEGMGYLES--KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPES  195 (291)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHh--CCcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchh
Confidence            8999999999999999999999  7799999999999999999999999998765           23456778999997


Q ss_pred             C--CCCch----------hhhhhh-CCCCCCcchhh
Q psy238          156 G--RPISG----------QYEIVT-KTNNVTEKKKE  178 (218)
Q Consensus       156 ~--~~~~~----------~~ei~t-g~~p~~~~~~e  178 (218)
                      .  ..++.          +++|++ |..||......
T Consensus       196 ~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~  231 (291)
T 1u46_A          196 LKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS  231 (291)
T ss_dssp             HHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH
Confidence            3  22332          689999 99999876543

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.3e-27  Score=193.14  Aligned_cols=160  Identities=21%  Similarity=0.311  Sum_probs=127.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .|..||||.+..      ......+.+|+.+++.++||||+++++++.+      ..++||||+++++|.+++..... .
T Consensus        30 ~~~~vavK~~~~------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~~lv~e~~~~~~L~~~l~~~~~-~   96 (307)
T 2eva_A           30 RAKDVAIKQIES------ESERKAFIVELRQLSRVNHPNIVKLYGACLN------PVCLVMEYAEGGSLYNVLHGAEP-L   96 (307)
T ss_dssp             TTEEEEEEECSS------TTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT------TTEEEEECCTTCBHHHHHHCSSS-E
T ss_pred             CCeeEEEEEecC------hhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC------CcEEEEEcCCCCCHHHHHhccCC-C
Confidence            478899999863      2245678899999999999999999998864      26999999999999999986532 1


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCC-CCcccCCCCCCcEEEecCCc-EEEeecCcccc-----ccCCCcccccccccC-
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCS-PPIIHGNLTCDTIFIQHNGL-VKIGCDTYTHT-----IENKKYLSATRQTYG-  156 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~-~~iiH~dlkp~NiLl~~~~~-~ki~dfg~~~~-----~~~~~t~~y~aPE~~-  156 (218)
                      ..++...++.++.|++.||.|||+.+ ++|+||||+|+|||++.++. ++|+|||++..     ....||+.|+|||+. 
T Consensus        97 ~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~  176 (307)
T 2eva_A           97 PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFE  176 (307)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSCHHHHT
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhhC
Confidence            24788999999999999999999932 35999999999999998886 79999999864     445789999999973 


Q ss_pred             -CCCch----------hhhhhhCCCCCCcchh
Q psy238          157 -RPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       157 -~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                       ..++.          +++|++|+.||.....
T Consensus       177 ~~~~~~~~Di~slG~il~el~~g~~p~~~~~~  208 (307)
T 2eva_A          177 GSNYSEKCDVFSWGIILWEVITRRKPFDEIGG  208 (307)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCS
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCchhhCc
Confidence             33333          6999999999976543

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.95  E-value=4.5e-27  Score=192.65  Aligned_cols=163  Identities=15%  Similarity=0.118  Sum_probs=134.4

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCC------cccceeeeeecCCCCCCeEEEEEeccCCCCHHHH
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHP------NIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF   76 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp------~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~   76 (218)
                      ..+|..||||++...     ......+.+|+.++..++|+      +|+++++++...+    .+|+||||+ +++|.++
T Consensus        37 ~~~~~~vavK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~----~~~lv~e~~-~~~l~~~  106 (339)
T 1z57_A           37 KAGGRHVAVKIVKNV-----DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG----HICIVFELL-GLSTYDF  106 (339)
T ss_dssp             TTTTEEEEEEEECSS-----HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT----EEEEEEECC-CCBHHHH
T ss_pred             CCCCcEEEEEEEecC-----CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC----cEEEEEcCC-CCCHHHH
Confidence            457899999999732     34556788889888887655      4999999987654    699999999 7899999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-------------------CCcEEEeecC
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-------------------NGLVKIGCDT  137 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-------------------~~~~ki~dfg  137 (218)
                      +.....  .++++..++.++.||+.||.|||+  .+|+||||+|+|||++.                   ++.++|+|||
T Consensus       107 l~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~--~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg  182 (339)
T 1z57_A          107 IKENGF--LPFRLDHIRKMAYQICKSVNFLHS--NKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFG  182 (339)
T ss_dssp             HHHTTT--CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCS
T ss_pred             HHhcCC--CCCcHHHHHHHHHHHHHHHHHHHH--CCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCc
Confidence            987542  458999999999999999999999  77999999999999987                   6689999999


Q ss_pred             cccc-----ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          138 YTHT-----IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       138 ~~~~-----~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ++..     ....+|+.|+|||+  +..++.          ++++++|..||......+
T Consensus       183 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~  241 (339)
T 1z57_A          183 SATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE  241 (339)
T ss_dssp             SCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH
T ss_pred             ccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH
Confidence            9875     45678999999997  333333          699999999998765544

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.95  E-value=3e-27  Score=194.48  Aligned_cols=158  Identities=19%  Similarity=0.191  Sum_probs=130.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhc--CCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQ--LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~--l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      +|..||||++...       ....+.+|++++..  ++||||+++++++.........+++||||+++++|.+++...  
T Consensus        64 ~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--  134 (342)
T 1b6c_B           64 RGEEVAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY--  134 (342)
T ss_dssp             TTEEEEEEEECGG-------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHHC--
T ss_pred             cCccEEEEEeCch-------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhcc--
Confidence            5889999999732       23456778888876  799999999999987654334689999999999999999753  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------c
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLH--------SCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------I  142 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH--------~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~  142 (218)
                         .+++..++.++.|++.||.|||        +  .+|+||||+|+|||++.++.++|+|||++..            .
T Consensus       135 ---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~--~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~  209 (342)
T 1b6c_B          135 ---TVTVEGMIKLALSTASGLAHLHMEIVGTQGK--PAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPN  209 (342)
T ss_dssp             ---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB--CEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCC
T ss_pred             ---CccHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccc
Confidence               4899999999999999999999        7  7799999999999999999999999998854            2


Q ss_pred             cCCCcccccccccCCCC--------ch----------hhhhhhC----------CCCCCcch
Q psy238          143 ENKKYLSATRQTYGRPI--------SG----------QYEIVTK----------TNNVTEKK  176 (218)
Q Consensus       143 ~~~~t~~y~aPE~~~~~--------~~----------~~ei~tg----------~~p~~~~~  176 (218)
                      ...+|+.|+|||+....        +.          +|+|++|          ..||....
T Consensus       210 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~  271 (342)
T 1b6c_B          210 HRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  271 (342)
T ss_dssp             SCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             cCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccC
Confidence            34689999999973321        11          6999999          77886653

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.95  E-value=7.1e-28  Score=200.44  Aligned_cols=165  Identities=18%  Similarity=0.236  Sum_probs=134.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-----------CCcccceeeeeecCCCCCCeEEEEEeccCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-----------HPNIVKFHRYWTDTHNDKPRVIFITEYMSS   70 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-----------hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~   70 (218)
                      |..+|..||||++...     ......+.+|+.++..+.           ||||+++++++...+.+...+++||+++ +
T Consensus        40 ~~~~~~~vaiK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~  113 (373)
T 1q8y_A           40 DMVNNTHVAMKIVRGD-----KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-G  113 (373)
T ss_dssp             ETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC-C
T ss_pred             ecCCCcEEEEEEecCC-----ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecC-C
Confidence            4578999999999732     344567788998888875           8999999999987655555789999999 8


Q ss_pred             CCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CcccCCCCCCcEEEec------CCcEEEeecCcccc--
Q psy238           71 GSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSP-PIIHGNLTCDTIFIQH------NGLVKIGCDTYTHT--  141 (218)
Q Consensus        71 ~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~-~iiH~dlkp~NiLl~~------~~~~ki~dfg~~~~--  141 (218)
                      ++|.+++.....  ..+++..++.++.||+.||.|||+  + +|+||||+|+|||++.      .+.++|+|||++..  
T Consensus       114 ~~L~~~~~~~~~--~~~~~~~~~~i~~qi~~aL~~lH~--~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~  189 (373)
T 1q8y_A          114 ENLLALIKKYEH--RGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD  189 (373)
T ss_dssp             EEHHHHHHHTTT--SCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT
T ss_pred             CCHHHHHHHhhc--cCCcHHHHHHHHHHHHHHHHHHHh--cCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccC
Confidence            999999987543  459999999999999999999999  6 7999999999999954      34899999999865  


Q ss_pred             ---ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcch
Q psy238          142 ---IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       142 ---~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                         ....+|+.|+|||+  +.+++.          +|+|++|..||....
T Consensus       190 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  239 (373)
T 1q8y_A          190 EHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDE  239 (373)
T ss_dssp             BCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             CCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCc
Confidence               45678999999997  333333          799999999998654

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.95  E-value=2.7e-27  Score=190.59  Aligned_cols=165  Identities=19%  Similarity=0.239  Sum_probs=135.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++......  ......+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....
T Consensus        43 ~~~~~~~valK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~~L~~~l~~~~  116 (287)
T 2wei_A           43 DRITQQEYAVKVINKASAK--NKDTSTILREVELLKKLDHPNIMKLFEILEDSS----SFYIVGELYTGGELFDEIIKRK  116 (287)
T ss_dssp             ETTTCCEEEEEEEEGGGBS--SSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHHHS
T ss_pred             EcCCCcEEEEEEecccccc--hHHHHHHHHHHHHHHhccCCCccEEEEEEeCCC----eEEEEEEccCCCCHHHHHHhcC
Confidence            3568999999999754222  234567889999999999999999999987643    6899999999999999987653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC---CcEEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN---GLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~---~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                          .+++..++.++.||+.||.|||+  .+|+|+||+|+|||++.+   +.++|+|||++..       ....+++.|+
T Consensus       117 ----~~~~~~~~~i~~qi~~~l~~LH~--~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~  190 (287)
T 2wei_A          117 ----RFSEHDAARIIKQVFSGITYMHK--HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYI  190 (287)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCccccc
Confidence                49999999999999999999999  779999999999999754   4799999998865       2234788999


Q ss_pred             ccccCC-CCch----------hhhhhhCCCCCCcchhh
Q psy238          152 RQTYGR-PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       152 aPE~~~-~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |||+.. .++.          ++++++|..||......
T Consensus       191 aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~  228 (287)
T 2wei_A          191 APEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEY  228 (287)
T ss_dssp             CHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             ChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCHH
Confidence            999732 2222          68999999999876544

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=194.06  Aligned_cols=159  Identities=17%  Similarity=0.225  Sum_probs=123.4

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecC-CCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDT-HNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~-~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      .+|..||||++....     ........++..+..+.||||+++++++... ..+...+++||||+++++|.+++...  
T Consensus        34 ~~~~~vavK~~~~~~-----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--  106 (336)
T 3g2f_A           34 LDERPVAVKVFSFAN-----RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH--  106 (336)
T ss_dssp             ETTEEEEEEEEEGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHC--
T ss_pred             ECCeEEEEEEeeccc-----hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhc--
Confidence            368899999997431     1111223344445668999999999866542 22334678999999999999999764  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCC---------CcccCCCCCCcEEEecCCcEEEeecCcccc------------
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSP---------PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------  141 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~---------~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------  141 (218)
                         ..++..++.++.||+.||.|||+  .         +|+||||||+|||++.++.++|+|||++..            
T Consensus       107 ---~~~~~~~~~i~~qi~~~L~~LH~--~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~  181 (336)
T 3g2f_A          107 ---TSDWVSSCRLAHSVTRGLAYLHT--ELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEE  181 (336)
T ss_dssp             ---CBCHHHHHHHHHHHHHHHHHHHC--CBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC-----
T ss_pred             ---ccchhHHHHHHHHHHHHHHHHHh--hhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccCcccc
Confidence               26889999999999999999999  6         799999999999999999999999999864            


Q ss_pred             ----ccCCCcccccccccCCC---------Cch----------hhhhhhCCCCCCc
Q psy238          142 ----IENKKYLSATRQTYGRP---------ISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       142 ----~~~~~t~~y~aPE~~~~---------~~~----------~~ei~tg~~p~~~  174 (218)
                          ....||+.|+|||+...         ++.          +|+|++|..||..
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~  237 (336)
T 3g2f_A          182 DNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFP  237 (336)
T ss_dssp             ----CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGST
T ss_pred             ccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCC
Confidence                13468999999997432         111          6999999887743

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.95  E-value=2.8e-27  Score=199.19  Aligned_cols=163  Identities=15%  Similarity=0.212  Sum_probs=128.2

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ..||+|.+.....        ...+|+.+++.++||||++++++|.....  +...+++||||+++ ++...+.......
T Consensus        65 ~~~aikk~~~~~~--------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~  135 (394)
T 4e7w_A           65 DEVAIKKVLQDKR--------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLK  135 (394)
T ss_dssp             EEEEEEEEECCTT--------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSE-EHHHHHHHHHHTT
T ss_pred             CeEEEEEEecCcc--------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCc-cHHHHHHHHHhhc
Confidence            4488888763211        12368999999999999999999876442  23457899999974 6666555443334


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe-cCCcEEEeecCcccc-------ccCCCcccccccccC
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ-HNGLVKIGCDTYTHT-------IENKKYLSATRQTYG  156 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~-~~~~~ki~dfg~~~~-------~~~~~t~~y~aPE~~  156 (218)
                      ..+++..++.++.||+.||.|||+  .+|+||||||+|||++ .++.++|+|||++..       ....+|+.|+|||+.
T Consensus       136 ~~~~~~~~~~~~~qi~~aL~~LH~--~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~  213 (394)
T 4e7w_A          136 QTMPMLLIKLYMYQLLRSLAYIHS--IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELI  213 (394)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--CCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHH
Confidence            569999999999999999999999  7799999999999999 789999999999864       356789999999962


Q ss_pred             --C-CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          157 --R-PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       157 --~-~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                        . .++.          +|+|++|..||.+....+.
T Consensus       214 ~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~  250 (394)
T 4e7w_A          214 FGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQ  250 (394)
T ss_dssp             TTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence              2 2333          6999999999987765443

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.95  E-value=5e-27  Score=209.26  Aligned_cols=162  Identities=23%  Similarity=0.302  Sum_probs=132.8

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      .+..||||.+...   ........+.+|+.++..++||||+++++++.+.     .+|+||||+++++|.+++....   
T Consensus       417 ~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~-----~~~lv~E~~~~g~L~~~l~~~~---  485 (656)
T 2j0j_A          417 PAMAVAIKTCKNC---TSDSVREKFLQEALTMRQFDHPHIVKLIGVITEN-----PVWIIMELCTLGELRSFLQVRK---  485 (656)
T ss_dssp             CCEEEEEEECSST---TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----SCEEEEECCTTCBHHHHHHHTT---
T ss_pred             ccEEEEEEEeccc---CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC-----ceEEEEEcCCCCcHHHHHHhcc---
Confidence            4567999988742   2345667899999999999999999999998542     4799999999999999998643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.++.++|+|||++..         ....+|+.|+|||+
T Consensus       486 ~~l~~~~~~~i~~qi~~aL~~LH~--~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~  563 (656)
T 2j0j_A          486 FSLDLASLILYAYQLSTALAYLES--KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPES  563 (656)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHH
Confidence            358999999999999999999999  7799999999999999999999999999865         23455789999997


Q ss_pred             --CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          156 --GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                        +..++.          +++|++ |..||.+....+
T Consensus       564 ~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~  600 (656)
T 2j0j_A          564 INFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND  600 (656)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence              333333          688887 999998765543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=198.26  Aligned_cols=166  Identities=14%  Similarity=0.126  Sum_probs=134.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCC--CCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND--KPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||++...  .........+.+|+.++..++||||+++++++......  ...+|+||+|+. ++|.+++. 
T Consensus        45 ~~~~~~~vaiK~~~~~--~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-  120 (353)
T 3coi_A           45 DKRSGEKVAIKKLSRP--FQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMG-  120 (353)
T ss_dssp             ETTTTEEEEEEEESST--TSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGGGTTT-
T ss_pred             ECCCCCEEEEEEeccc--ccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEecccc-CCHHHHhc-
Confidence            4678999999999743  23345667889999999999999999999998764321  124699999996 68887764 


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                           ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..     ....+|+.|+|||
T Consensus       121 -----~~~~~~~~~~i~~qi~~al~~LH~--~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE  193 (353)
T 3coi_A          121 -----LKFSEEKIQYLVYQMLKGLKYIHS--AGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPE  193 (353)
T ss_dssp             -----SCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSSCCGGGEEECTTCCEEECSTTCTTC--------CCSBCCSCHH
T ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEeECCCCcEEEeecccccCCCCCccccccCcCcCCHH
Confidence                 248999999999999999999999  7799999999999999999999999999875     3457899999999


Q ss_pred             cC---CCCch----------hhhhhhCCCCCCcchhh
Q psy238          155 YG---RPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       155 ~~---~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      +.   ..++.          +++|++|..||.+....
T Consensus       194 ~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~  230 (353)
T 3coi_A          194 VILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL  230 (353)
T ss_dssp             HHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHH
T ss_pred             HHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            62   22222          79999999999876543

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.95  E-value=1.5e-27  Score=196.73  Aligned_cols=165  Identities=13%  Similarity=0.138  Sum_probs=114.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++...     .....   .....+..+.||||+++++++.....+...+++||||+++++|.+++....
T Consensus        50 ~~~~~~~vavK~~~~~-----~~~~~---e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~  121 (336)
T 3fhr_A           50 HRRTGQKCALKLLYDS-----PKARQ---EVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERG  121 (336)
T ss_dssp             ETTTCCEEEEEEEESS-----HHHHH---HHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-
T ss_pred             ECCCCCEEEEEEecCc-----HHHHH---HHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcC
Confidence            4568999999999632     22222   222335667999999999998775444556899999999999999998754


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---CCcEEEeecCcccc------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---NGLVKIGCDTYTHT------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~~~~ki~dfg~~~~------~~~~~t~~y~a  152 (218)
                      .  ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.   ++.++|+|||++..      ....+|+.|+|
T Consensus       122 ~--~~l~~~~~~~i~~ql~~~l~~LH~--~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~a  197 (336)
T 3fhr_A          122 D--QAFTEREAAEIMRDIGTAIQFLHS--HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVA  197 (336)
T ss_dssp             C--CCCBHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC----------------
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHHh--CCeecCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCccC
Confidence            2  459999999999999999999999  77999999999999976   45699999999864      45677999999


Q ss_pred             cccCC--CCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYGR--PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~--~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+..  .++.          ++++++|..||......
T Consensus       198 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  235 (336)
T 3fhr_A          198 PEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQ  235 (336)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred             hhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccch
Confidence            99743  2222          69999999999765543

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.95  E-value=3.4e-27  Score=192.97  Aligned_cols=169  Identities=17%  Similarity=0.237  Sum_probs=132.1

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC---CCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHHHHh
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL---EHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l---~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      .+|..||||++......  ......+.+|+.++..+   .||||+++++++.... .....+++||||+. ++|.+++..
T Consensus        35 ~~~~~vavK~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~  111 (326)
T 1blx_A           35 NGGRFVALKRVRVQTGE--EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDK  111 (326)
T ss_dssp             TTTEEEEEEEEEEEBCT--TSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-CBHHHHHHH
T ss_pred             CCCEEEEEEEeccCccc--ccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecCC-CCHHHHHHh
Confidence            56889999999754221  11122345566665555   8999999999986321 12356899999997 699999987


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                      ...  ..+++..++.++.|++.||.|||+  .||+|+||+|+|||++.++.++|+|||++..       ....+|..|+|
T Consensus       112 ~~~--~~~~~~~~~~~~~qi~~~l~~lH~--~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~a  187 (326)
T 1blx_A          112 VPE--PGVPTETIKDMMFQLLRGLDFLHS--HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRA  187 (326)
T ss_dssp             SCT--TCSCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCC
T ss_pred             ccc--CCCCHHHHHHHHHHHHHHHHHHHH--CCceeccCCHHHeEEcCCCCEEEecCcccccccCCCCccccccccceeC
Confidence            543  448999999999999999999999  7799999999999999999999999998864       34678999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+.  ..++.          +++|++|..||.+.....
T Consensus       188 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  226 (326)
T 1blx_A          188 PEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD  226 (326)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence            9972  23332          699999999998765543

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.95  E-value=7.6e-27  Score=188.47  Aligned_cols=144  Identities=22%  Similarity=0.310  Sum_probs=119.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC---------CCCCeEEEEEeccCCCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH---------NDKPRVIFITEYMSSGS   72 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~---------~~~~~~~lv~e~~~~~s   72 (218)
                      +..+|..||||++...     ......+.+|+.++..++||||+++++++.+..         .....+|+||||+++++
T Consensus        27 ~~~~~~~vaiK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~  101 (303)
T 1zy4_A           27 NALDSRYYAIKKIRHT-----EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGT  101 (303)
T ss_dssp             ETTTCCEEEEEEEEEE-----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCB
T ss_pred             EcCCCeEEEEEEEecc-----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCC
Confidence            4568999999999632     345678899999999999999999999886532         12457899999999999


Q ss_pred             HHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------
Q psy238           73 LKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------  141 (218)
Q Consensus        73 L~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------  141 (218)
                      |.+++....   ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++.++.++|+|||++..           
T Consensus       102 L~~~l~~~~---~~~~~~~~~~i~~qi~~~l~~LH~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~  176 (303)
T 1zy4_A          102 LYDLIHSEN---LNQQRDEYWRLFRQILEALSYIHS--QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLD  176 (303)
T ss_dssp             HHHHHHHSC---GGGCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC--------
T ss_pred             HHHhhhccc---cccchHHHHHHHHHHHHHHHHHHh--CCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccc
Confidence            999998643   347889999999999999999999  7799999999999999999999999998754           


Q ss_pred             -----------ccCCCccccccccc
Q psy238          142 -----------IENKKYLSATRQTY  155 (218)
Q Consensus       142 -----------~~~~~t~~y~aPE~  155 (218)
                                 ....+|+.|+|||+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~y~aPE~  201 (303)
T 1zy4_A          177 SQNLPGSSDNLTSAIGTAMYVATEV  201 (303)
T ss_dssp             -----------------CTTSCHHH
T ss_pred             cccccccccccccCCCcccccCccc
Confidence                       23457899999997

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.95  E-value=4.4e-27  Score=208.37  Aligned_cols=168  Identities=21%  Similarity=0.234  Sum_probs=138.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC--CCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH--NDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~--~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|..||||++...   ........+.+|+.++..++||||+++++++....  ......|+||||+++++|.+++..
T Consensus        35 ~~~tg~~VAVKvi~~~---~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~  111 (676)
T 3qa8_A           35 HQDTGEQVAIKQCRQE---LSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQ  111 (676)
T ss_dssp             CTTTTCCEEECCCCSC---CCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHS
T ss_pred             ECCCCcEEEEEEeccc---CCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHh
Confidence            5678999999998742   23556678999999999999999999999876522  124568999999999999999987


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCc---EEEeecCcccc-------ccCCCccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL---VKIGCDTYTHT-------IENKKYLS  149 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~---~ki~dfg~~~~-------~~~~~t~~  149 (218)
                      ... ...+++..++.++.|++.||.|||+  .||+||||+|+|||++.++.   ++|+|||++..       ....||+.
T Consensus       112 ~~~-~~~lse~~i~~I~~QLl~aL~yLHs--~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~  188 (676)
T 3qa8_A          112 FEN-CCGLKEGPIRTLLSDISSALRYLHE--NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQ  188 (676)
T ss_dssp             SSC-TTCCCSSHHHHHHHHHHHHHHHHHH--TTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCT
T ss_pred             ccc-CCCCCHHHHHHHHHHHHHHHHHHHH--CCCccCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcc
Confidence            542 2358899999999999999999999  77999999999999997654   99999999865       34578999


Q ss_pred             ccccccC--CCCch----------hhhhhhCCCCCCcc
Q psy238          150 ATRQTYG--RPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~~--~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      |+|||+.  ..++.          +|++++|..||...
T Consensus       189 Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~  226 (676)
T 3qa8_A          189 YLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPN  226 (676)
T ss_dssp             TCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcc
Confidence            9999973  33333          69999999999653

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.95  E-value=3.7e-27  Score=190.00  Aligned_cols=161  Identities=15%  Similarity=0.116  Sum_probs=130.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++....      ....+.+|+.++..+.|++++..+.++....   ...++||||+ +++|.+++....
T Consensus        30 ~~~~~~~vavK~~~~~~------~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~---~~~~lv~e~~-~~~L~~~~~~~~   99 (296)
T 4hgt_A           30 DIAAGEEVAIKLECVKT------KHPQLHIESKIYKMMQGGVGIPTIRWCGAEG---DYNVMVMELL-GPSLEDLFNFCS   99 (296)
T ss_dssp             ETTTTEEEEEEEEEC---------CCCHHHHHHHHHHHTTSTTCCCEEEEEEET---TEEEEEEECC-CCBHHHHHHHTT
T ss_pred             EcCCCceEEEEeecccc------cchHHHHHHHHHHHhcCCCCCCeeeeecCCC---CceEEEEEcc-CCCHHHHHHHhc
Confidence            45789999999876432      2235788999999999988887777665433   3689999999 899999998643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE---ecCCcEEEeecCcccc---------------cc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI---QHNGLVKIGCDTYTHT---------------IE  143 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl---~~~~~~ki~dfg~~~~---------------~~  143 (218)
                         ..+++..++.++.|++.||.|||+  .+|+||||+|+|||+   +.++.++|+|||++..               ..
T Consensus       100 ---~~~~~~~~~~i~~qi~~~l~~LH~--~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~  174 (296)
T 4hgt_A          100 ---RKFSLKTVLLLADQMISRIEYIHS--KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKN  174 (296)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccc
Confidence               359999999999999999999999  779999999999999   7889999999999864               14


Q ss_pred             CCCccccccccc--CCCCch----------hhhhhhCCCCCCcchh
Q psy238          144 NKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       144 ~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ..+|+.|+|||+  +..++.          ++++++|..||.+...
T Consensus       175 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  220 (296)
T 4hgt_A          175 LTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKA  220 (296)
T ss_dssp             CCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC
T ss_pred             cCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccch
Confidence            478999999997  333333          6899999999986544

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=195.90  Aligned_cols=155  Identities=14%  Similarity=0.123  Sum_probs=126.5

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccc---------------eeeeeecCCCCCCeEEEEEeccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVK---------------FHRYWTDTHNDKPRVIFITEYMS   69 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~---------------l~~~~~~~~~~~~~~~lv~e~~~   69 (218)
                      +|..||||++...         ..+.+|+.++..++||||++               +++++...   ...+|+||||+ 
T Consensus        74 ~~~~vavK~~~~~---------~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~lv~e~~-  140 (352)
T 2jii_A           74 QKQKFSLKLDAKD---------GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQ---DKYRFLVLPSL-  140 (352)
T ss_dssp             ---CEEEEEEETT---------STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEET---TTEEEEEEECC-
T ss_pred             cCceEEEEEeccc---------chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhccccC---CcEEEEEecCC-
Confidence            5889999998732         35778999999999999988               45555432   24689999999 


Q ss_pred             CCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC--cEEEeecCcccc------
Q psy238           70 SGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG--LVKIGCDTYTHT------  141 (218)
Q Consensus        70 ~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~--~~ki~dfg~~~~------  141 (218)
                      +++|.+++.....  ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++  .++|+|||++..      
T Consensus       141 ~~~L~~~l~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~--~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~  216 (352)
T 2jii_A          141 GRSLQSALDVSPK--HVLSERSVLQVACRLLDALEFLHE--NEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGK  216 (352)
T ss_dssp             CEEHHHHHHHSGG--GCCCHHHHHHHHHHHHHHHHHHHH--TTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGC
T ss_pred             CcCHHHHHHhCCc--CCCCHHHHHHHHHHHHHHHHHHHh--CCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCc
Confidence            8999999987532  459999999999999999999999  7799999999999999998  999999999854      


Q ss_pred             ---------ccCCCcccccccccC--CCCch----------hhhhhhCCCCCCcch
Q psy238          142 ---------IENKKYLSATRQTYG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       142 ---------~~~~~t~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                               ....||+.|+|||+.  ..++.          +++|++|..||....
T Consensus       217 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  272 (352)
T 2jii_A          217 HVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCL  272 (352)
T ss_dssp             CCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred             cccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence                     224789999999973  23333          689999999998765

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.95  E-value=1.2e-26  Score=187.09  Aligned_cols=160  Identities=14%  Similarity=0.104  Sum_probs=130.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++.....      ...+.+|+.++..+.|++++..+.++....   ...++||||+ +++|.+++....
T Consensus        30 ~~~~~~~vavK~~~~~~~------~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~---~~~~lv~e~~-~~~L~~~~~~~~   99 (296)
T 3uzp_A           30 DIAAGEEVAIKLECVKTK------HPQLHIESKIYKMMQGGVGIPTIRWCGAEG---DYNVMVMELL-GPSLEDLFNFCS   99 (296)
T ss_dssp             ETTTTEEEEEEEEESCSS------CCHHHHHHHHHHHHTTSTTCCCEEEEEEET---TEEEEEEECC-CCBHHHHHHHTT
T ss_pred             EcCCCcEEEEEEecCCcc------hhHHHHHHHHHHHhhcCCCCCccccccCCC---CceEEEEEec-CCCHHHHHHhhc
Confidence            457899999999875321      134788999999999988777776664432   3689999999 899999997543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE---ecCCcEEEeecCcccc---------------cc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI---QHNGLVKIGCDTYTHT---------------IE  143 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl---~~~~~~ki~dfg~~~~---------------~~  143 (218)
                         ..+++..++.++.|++.||.|||+  ++|+||||+|+|||+   +.++.++|+|||++..               ..
T Consensus       100 ---~~~~~~~~~~i~~qi~~~l~~lH~--~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~  174 (296)
T 3uzp_A          100 ---RKFSLKTVLLLADQMISRIEYIHS--KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKN  174 (296)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCC
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHh--CCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccc
Confidence               359999999999999999999999  779999999999999   4789999999998864               23


Q ss_pred             CCCcccccccccC--CCCch----------hhhhhhCCCCCCcch
Q psy238          144 NKKYLSATRQTYG--RPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       144 ~~~t~~y~aPE~~--~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      ..||+.|+|||+.  ..++.          ++++++|+.||.+..
T Consensus       175 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  219 (296)
T 3uzp_A          175 LTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK  219 (296)
T ss_dssp             CCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             cccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcC
Confidence            4789999999973  23333          699999999998644

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.95  E-value=5.3e-27  Score=193.59  Aligned_cols=165  Identities=17%  Similarity=0.228  Sum_probs=135.5

Q ss_pred             CCcEEEEEEeeccccccc-------------HHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCC
Q psy238            5 EGVEVVWNEVQFSERKNF-------------KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSG   71 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~-------------~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~   71 (218)
                      +|..||||++........             ......+.+|+.++..++||||+++++++.+..    .+++||||++++
T Consensus        53 ~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~----~~~lv~e~~~~~  128 (348)
T 2pml_X           53 DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNYD----EVYIIYEYMEND  128 (348)
T ss_dssp             TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEESSS----EEEEEEECCTTC
T ss_pred             CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEeeCC----eEEEEEeccCCC
Confidence            788999999985321110             011267899999999999999999999997754    699999999999


Q ss_pred             CHHHH------HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCcccCCCCCCcEEEecCCcEEEeecCcccc---
Q psy238           72 SLKQF------LKRTKRNVKKLPLSAWKRWCSQILSALSYLHS-CSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---  141 (218)
Q Consensus        72 sL~~~------l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---  141 (218)
                      +|.++      +....  ...+++..++.++.|++.||.|||+ .+  |+|+||+|+|||++.++.++|+|||.+..   
T Consensus       129 ~L~~~~~~~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~~--i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  204 (348)
T 2pml_X          129 SILKFDEYFFVLDKNY--TCFIPIQVIKCIIKSVLNSFSYIHNEKN--ICHRDVKPSNILMDKNGRVKLSDFGESEYMVD  204 (348)
T ss_dssp             BSSEESSSEESSCSSS--CCCCCHHHHHHHHHHHHHHHHHHHHTSC--EECCCCCGGGEEECTTSCEEECCCTTCEECBT
T ss_pred             cHHHHHHHhhhhhhcc--ccCCCHHHHHHHHHHHHHHHHHHhccCC--EeecCCChHhEEEcCCCcEEEecccccccccc
Confidence            99998      54321  2569999999999999999999998 65  99999999999999999999999999865   


Q ss_pred             ---ccCCCcccccccccCC---CCch-----------hhhhhhCCCCCCcchh
Q psy238          142 ---IENKKYLSATRQTYGR---PISG-----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       142 ---~~~~~t~~y~aPE~~~---~~~~-----------~~ei~tg~~p~~~~~~  177 (218)
                         ....++..|+|||+..   .++.           ++++++|..||.....
T Consensus       205 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  257 (348)
T 2pml_X          205 KKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS  257 (348)
T ss_dssp             TEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC
T ss_pred             ccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence               4568899999999833   2222           6999999999986654

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.94  E-value=2.2e-26  Score=189.86  Aligned_cols=163  Identities=13%  Similarity=0.147  Sum_probs=132.4

Q ss_pred             CCCC-cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCc------ccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            3 TEEG-VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPN------IVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         3 ~~~g-~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~------iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      ..+| ..||||++...     ......+.+|+.++..+.|++      ++.+++++....    .+|+||||+ +++|.+
T Consensus        41 ~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~lv~e~~-~~~l~~  110 (355)
T 2eu9_A           41 HARGKSQVALKIIRNV-----GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELL-GKNTFE  110 (355)
T ss_dssp             TTTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT----EEEEEEECC-CCBHHH
T ss_pred             cCCCceEEEEEEEccc-----ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC----eEEEEEecc-CCChHH
Confidence            3455 68999999732     345567788999988887655      888888887644    699999999 678888


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE-------------------ecCCcEEEeec
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI-------------------QHNGLVKIGCD  136 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl-------------------~~~~~~ki~df  136 (218)
                      ++.....  ..+++..++.++.||+.||.|||+  .+|+||||+|+|||+                   +.++.++|+||
T Consensus       111 ~l~~~~~--~~~~~~~~~~i~~qi~~~L~~lH~--~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Df  186 (355)
T 2eu9_A          111 FLKENNF--QPYPLPHVRHMAYQLCHALRFLHE--NQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADF  186 (355)
T ss_dssp             HHHHTTT--CCCCHHHHHHHHHHHHHHHHHHHT--TTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCC
T ss_pred             HHHhccC--CCCCHHHHHHHHHHHHHHHHHHHH--CCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeec
Confidence            8876532  459999999999999999999999  779999999999999                   66789999999


Q ss_pred             Ccccc-----ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          137 TYTHT-----IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       137 g~~~~-----~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |++..     ....||+.|+|||+  +..++.          +|+|++|..||......+
T Consensus       187 g~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~  246 (355)
T 2eu9_A          187 GSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE  246 (355)
T ss_dssp             TTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             CccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            99875     45678999999997  333333          799999999998766544

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.94  E-value=2.4e-27  Score=201.93  Aligned_cols=161  Identities=16%  Similarity=0.112  Sum_probs=120.7

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|+.||||++...       ....+.+|+.+|..+ +||||+++++++.+..    .+|+||||+. ++|.+++....
T Consensus        36 ~~~g~~vAvK~~~~~-------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~----~~~lv~E~~~-gsL~~~l~~~~  103 (434)
T 2rio_A           36 SFQGRPVAVKRMLID-------FCDIALMEIKLLTESDDHPNVIRYYCSETTDR----FLYIALELCN-LNLQDLVESKN  103 (434)
T ss_dssp             ESSSSEEEEEEEEGG-------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSS----EEEEEECCCS-EEHHHHHHTC-
T ss_pred             EECCeEEEEEEEcHH-------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCC----eEEEEEecCC-CCHHHHHhccC
Confidence            457999999998732       234567899999876 8999999999987643    6899999995 69999998654


Q ss_pred             ccCCC---CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-------------CcEEEeecCcccc----
Q psy238           82 RNVKK---LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-------------GLVKIGCDTYTHT----  141 (218)
Q Consensus        82 ~~~~~---~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-------------~~~ki~dfg~~~~----  141 (218)
                      .....   .++..++.++.||+.||.|||+  .+|+||||+|+|||++.+             +.++|+|||++..    
T Consensus       104 ~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~--~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~  181 (434)
T 2rio_A          104 VSDENLKLQKEYNPISLLRQIASGVAHLHS--LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSG  181 (434)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC-
T ss_pred             CCchhhhhccchhHHHHHHHHHHHHHHHHH--CCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCC
Confidence            21111   1233457899999999999999  779999999999999754             4899999998864    


Q ss_pred             --------ccCCCcccccccccCC---------CCch----------hhhhhh-CCCCCCcchh
Q psy238          142 --------IENKKYLSATRQTYGR---------PISG----------QYEIVT-KTNNVTEKKK  177 (218)
Q Consensus       142 --------~~~~~t~~y~aPE~~~---------~~~~----------~~ei~t-g~~p~~~~~~  177 (218)
                              ....||+.|+|||+..         .++.          +++|++ |..||.....
T Consensus       182 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~  245 (434)
T 2rio_A          182 QSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS  245 (434)
T ss_dssp             -------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT
T ss_pred             CccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh
Confidence                    1347899999999732         2222          689998 9999976543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.94  E-value=1.8e-26  Score=189.04  Aligned_cols=165  Identities=15%  Similarity=0.130  Sum_probs=119.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHH-HhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFE-NLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~-~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..+|..||||++...   ........+..|+. +++.++||||+++++++...+    .+++||||++ ++|.+++...
T Consensus        43 ~~~~~~~vaiK~~~~~---~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~----~~~lv~e~~~-~~l~~~~~~~  114 (327)
T 3aln_A           43 HKPSGQIMAVKRIRST---VDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG----DCWICMELMS-TSFDKFYKYV  114 (327)
T ss_dssp             ETTTTEEEEEEEEECC---CCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSS----EEEEEECCCS-EEHHHHHHHH
T ss_pred             EcCCCCEEEEEEeecc---cCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCC----ceEEEEeecC-CChHHHHHHH
Confidence            4568999999999743   12334445555555 677889999999999997653    6899999997 5888887743


Q ss_pred             cc-cCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccc
Q psy238           81 KR-NVKKLPLSAWKRWCSQILSALSYLHSCSP-PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        81 ~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~~-~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                      .. ....+++..++.++.|++.||.|||+  . +|+|+||+|+|||++.++.++|+|||++..       ....||+.|+
T Consensus       115 ~~~~~~~~~~~~~~~i~~~i~~~l~~lH~--~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~  192 (327)
T 3aln_A          115 YSVLDDVIPEEILGKITLATVKALNHLKE--NLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYM  192 (327)
T ss_dssp             HHTTCCCCCHHHHHHHHHHHHHHHHHHHH--HHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-----------------
T ss_pred             HhhhcccCcHHHHHHHHHHHHHHHHHHhc--cCCEeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCCcccc
Confidence            21 12458999999999999999999999  6 799999999999999999999999999865       2347899999


Q ss_pred             ccccCC------CCch----------hhhhhhCCCCCCcch
Q psy238          152 RQTYGR------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       152 aPE~~~------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |||+..      .++.          +++|++|..||....
T Consensus       193 aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  233 (327)
T 3aln_A          193 APERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWN  233 (327)
T ss_dssp             -------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-
T ss_pred             CceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence            999742      2222          689999999997643

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.94  E-value=2.7e-26  Score=192.22  Aligned_cols=167  Identities=19%  Similarity=0.181  Sum_probs=133.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CC-----cccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HP-----NIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp-----~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      |..+|..||||++...     ......+..|+.++..+. |+     +|+.+++++....    .+|+||||++ ++|.+
T Consensus        75 ~~~~~~~vaiK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~----~~~lv~e~~~-~~L~~  144 (382)
T 2vx3_A           75 DRVEQEWVAIKIIKNK-----KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN----HLCLVFEMLS-YNLYD  144 (382)
T ss_dssp             ETTTTEEEEEEEECSS-----HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT----EEEEEEECCC-CBHHH
T ss_pred             EcCCCcEEEEEEEecc-----HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC----ceEEEEecCC-CCHHH
Confidence            4568999999999732     344556777888887774 44     4999999887643    6999999995 69999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe--cCCcEEEeecCcccc-----ccCCCcc
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ--HNGLVKIGCDTYTHT-----IENKKYL  148 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~--~~~~~ki~dfg~~~~-----~~~~~t~  148 (218)
                      ++.....  ..+++..++.++.|++.||.|||+...+|+||||||+|||++  .++.++|+|||++..     ....+|+
T Consensus       145 ~l~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~~t~  222 (382)
T 2vx3_A          145 LLRNTNF--RGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSR  222 (382)
T ss_dssp             HHHHTTT--SCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCG
T ss_pred             HHhhcCc--CCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccccccCCc
Confidence            9987642  458999999999999999999995215699999999999995  468899999999865     4567899


Q ss_pred             ccccccc--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          149 SATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       149 ~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      .|+|||+  +.+++.          +++|++|+.||.+....+.
T Consensus       223 ~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~  266 (382)
T 2vx3_A          223 FYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQ  266 (382)
T ss_dssp             GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             cccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            9999997  333433          6999999999987665443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.94  E-value=6.8e-27  Score=209.31  Aligned_cols=159  Identities=20%  Similarity=0.190  Sum_probs=129.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCC-CeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDK-PRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~-~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      +|+.||||++...   ........+.+|+.++..++||||+++++++...+..+ ..+|+||||++|++|.+++..    
T Consensus       105 ~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~----  177 (681)
T 2pzi_A          105 NGRPVVLKGLVHS---GDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ----  177 (681)
T ss_dssp             TTEEEEEEESCSS---CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C----
T ss_pred             CCcEEEEEEeCcc---CCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC----
Confidence            6899999988742   23456677899999999999999999999998755322 236999999999999987753    


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccCC-C
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYGR-P  158 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~~-~  158 (218)
                        .+++..++.++.||+.||.|||+  .+|+||||||+|||++.+ .++|+|||++..    ....||+.|+|||+.. .
T Consensus       178 --~l~~~~~~~~~~qi~~aL~~lH~--~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~  252 (681)
T 2pzi_A          178 --KLPVAEAIAYLLEILPALSYLHS--IGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTG  252 (681)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECSS-CEEECCCTTCEETTCCSCCCCCTTTSCTTHHHHC
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHH--CCCeecccChHHeEEeCC-cEEEEecccchhcccCCccCCCccccCHHHHcCC
Confidence              49999999999999999999999  779999999999999875 899999999875    4567899999999722 1


Q ss_pred             Cch----------hhhhhhCCCCCCcc
Q psy238          159 ISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       159 ~~~----------~~ei~tg~~p~~~~  175 (218)
                      .+.          +++|++|..||.+.
T Consensus       253 ~~~~sDi~slG~~l~~l~~g~~~~~~~  279 (681)
T 2pzi_A          253 PTVATDIYTVGRTLAALTLDLPTRNGR  279 (681)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCCEETTE
T ss_pred             CCCceehhhhHHHHHHHHhCCCCCccc
Confidence            222          68899999888754

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.94  E-value=5.9e-27  Score=190.66  Aligned_cols=164  Identities=11%  Similarity=0.187  Sum_probs=128.8

Q ss_pred             CCCCCcEEEEEEeeccccccc--HHHHHHHHHHHHHhhcC----CCCcccceeeeeecCCCCCCeEEEEEec-cCCCCHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNF--KAQEEKIQQVFENLTQL----EHPNIVKFHRYWTDTHNDKPRVIFITEY-MSSGSLK   74 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~--~~~~~~~~~ei~~l~~l----~hp~iv~l~~~~~~~~~~~~~~~lv~e~-~~~~sL~   74 (218)
                      +..+|..||||++........  ......+.+|+.++..+    +||||+++++++....    ..++||++ +.+++|.
T Consensus        52 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~----~~~~v~e~~~~~~~L~  127 (312)
T 2iwi_A           52 RLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQE----GFMLVLERPLPAQDLF  127 (312)
T ss_dssp             CTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC---------CEEEEECCSSEEEHH
T ss_pred             EccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCC----eEEEEEEecCCCCCHH
Confidence            567899999999975422111  12233456788888888    8999999999987643    47999999 7889999


Q ss_pred             HHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe-cCCcEEEeecCcccc------ccCCCc
Q psy238           75 QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ-HNGLVKIGCDTYTHT------IENKKY  147 (218)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~-~~~~~ki~dfg~~~~------~~~~~t  147 (218)
                      +++....    .+++..++.++.||+.||.|||+  .+|+|+||+|+|||++ .++.++|+|||++..      ....++
T Consensus       128 ~~l~~~~----~~~~~~~~~~~~qi~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  201 (312)
T 2iwi_A          128 DYITEKG----PLGEGPSRCFFGQVVAAIQHCHS--RGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGT  201 (312)
T ss_dssp             HHHHHHC----SCCHHHHHHHHHHHHHHHHHHHH--HTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCCCCSC
T ss_pred             HHHHhcC----CCCHHHHHHHHHHHHHHHHHHHH--CCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccccCCc
Confidence            9998753    49999999999999999999999  7799999999999999 789999999998865      445789


Q ss_pred             cccccccc--CCCCch-----------hhhhhhCCCCCCcc
Q psy238          148 LSATRQTY--GRPISG-----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       148 ~~y~aPE~--~~~~~~-----------~~ei~tg~~p~~~~  175 (218)
                      ..|+|||+  +.....           ++++++|..||...
T Consensus       202 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  242 (312)
T 2iwi_A          202 RVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD  242 (312)
T ss_dssp             TTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             ccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh
Confidence            99999996  222211           69999999999753

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.94  E-value=6e-26  Score=184.80  Aligned_cols=163  Identities=16%  Similarity=0.151  Sum_probs=124.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|..||||++....  ........+..+..++..++||||+++++++....    .+++||||+ ++.+..+.....
T Consensus        46 ~~~~~~~vavK~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~----~~~lv~e~~-~~~~~~l~~~~~  118 (318)
T 2dyl_A           46 FRKTGHVIAVKQMRRSG--NKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNT----DVFIAMELM-GTCAEKLKKRMQ  118 (318)
T ss_dssp             ETTTCCEEEEEEEETTS--CHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----EEEEEECCC-SEEHHHHHHHHT
T ss_pred             EecCCeEEEEEEecccc--cchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCC----cEEEEEecc-CCcHHHHHHHhc
Confidence            34689999999997532  22233344455556788889999999999997644    689999999 566666655432


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSP-PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~-~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  . +|+|+||+|+|||++.++.++|+|||++..       ....+|+.|+||
T Consensus       119 ---~~~~~~~~~~~~~~i~~~l~~lH~--~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aP  193 (318)
T 2dyl_A          119 ---GPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAP  193 (318)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCGGGEEECTTSCEEECCCTTC--------------CCTTCCH
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHh--hCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCccccCh
Confidence               459999999999999999999998  4 699999999999999999999999998864       345789999999


Q ss_pred             ccCC-------CCch----------hhhhhhCCCCCCcch
Q psy238          154 TYGR-------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       154 E~~~-------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |+..       .++.          +++|++|..||....
T Consensus       194 E~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  233 (318)
T 2dyl_A          194 ERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK  233 (318)
T ss_dssp             HHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             hhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC
Confidence            9842       1222          699999999997643

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.94  E-value=1.1e-25  Score=193.91  Aligned_cols=161  Identities=12%  Similarity=0.115  Sum_probs=128.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCc-ccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPN-IVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~-iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++......      ..+..|+.++..+.|++ |..+..++...    ...++||||+ +++|.+++...
T Consensus        28 ~~~~~~~vAvK~~~~~~~~------~~~~~E~~il~~L~~~~~i~~i~~~~~~~----~~~~lvme~~-g~sL~~ll~~~   96 (483)
T 3sv0_A           28 NIQTNEEVAIKLENVKTKH------PQLLYESKIYRILQGGTGIPNVRWFGVEG----DYNVLVMDLL-GPSLEDLFNFC   96 (483)
T ss_dssp             ETTTCCEEEEEEEETTCSS------CCHHHHHHHHHHTTTSTTCCCEEEEEEET----TEEEEEEECC-CCBHHHHHHHT
T ss_pred             ECCCCcEEEEEEecccccc------HHHHHHHHHHHHhcCCCCCCeEEEEEeeC----CEEEEEEECC-CCCHHHHHHhh
Confidence            4578999999988754221      24778999999998755 44444444332    3689999999 89999999864


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEE---ecCCcEEEeecCcccc---------------c
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI---QHNGLVKIGCDTYTHT---------------I  142 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl---~~~~~~ki~dfg~~~~---------------~  142 (218)
                      .   ..+++..++.++.||+.||.|||+  .+|+||||||+||||   +.++.++|+|||++..               .
T Consensus        97 ~---~~l~~~~~~~i~~qi~~aL~yLH~--~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~  171 (483)
T 3sv0_A           97 S---RKLSLKTVLMLADQMINRVEFVHS--KSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENK  171 (483)
T ss_dssp             T---TCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCC
T ss_pred             c---CCCCHHHHHHHHHHHHHHHHHHHH--CCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccccccccccc
Confidence            3   359999999999999999999999  779999999999999   5889999999999864               1


Q ss_pred             cCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          143 ENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       143 ~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ...||..|+|||+  +..++.          +|+|++|..||.+....
T Consensus       172 ~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~  219 (483)
T 3sv0_A          172 NLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG  219 (483)
T ss_dssp             CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS
T ss_pred             ccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccch
Confidence            5578999999997  333333          79999999999875543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.94  E-value=1.1e-26  Score=190.18  Aligned_cols=164  Identities=12%  Similarity=0.173  Sum_probs=132.5

Q ss_pred             CCCCCcEEEEEEeeccccccc--HHHHHHHHHHHHHhhcCC--CCcccceeeeeecCCCCCCeEEEEEeccCC-CCHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNF--KAQEEKIQQVFENLTQLE--HPNIVKFHRYWTDTHNDKPRVIFITEYMSS-GSLKQF   76 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~--~~~~~~~~~ei~~l~~l~--hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~-~sL~~~   76 (218)
                      +..+|..||||++........  ......+.+|+.++..+.  ||||+++++++....    .+++||+++.+ ++|.++
T Consensus        64 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~----~~~lv~e~~~~~~~L~~~  139 (320)
T 3a99_A           64 RVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD----SFVLILERPEPVQDLFDF  139 (320)
T ss_dssp             ETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS----EEEEEEECCSSEEEHHHH
T ss_pred             ECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC----cEEEEEEcCCCCccHHHH
Confidence            456899999999985432210  012234667889999885  599999999997654    58999999975 899999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe-cCCcEEEeecCcccc------ccCCCccc
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ-HNGLVKIGCDTYTHT------IENKKYLS  149 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~-~~~~~ki~dfg~~~~------~~~~~t~~  149 (218)
                      +....    .+++..++.++.||+.||.|||+  .+|+||||+|+|||++ .++.++|+|||++..      ....+|+.
T Consensus       140 l~~~~----~l~~~~~~~i~~qi~~~L~~LH~--~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~  213 (320)
T 3a99_A          140 ITERG----ALQEELARSFFWQVLEAVRHCHN--CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRV  213 (320)
T ss_dssp             HHHHC----SCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGG
T ss_pred             HhccC----CCCHHHHHHHHHHHHHHHHHHHH--CCcEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCCCCcc
Confidence            98753    49999999999999999999999  7799999999999999 789999999998865      34578999


Q ss_pred             cccccc--CCCC-ch----------hhhhhhCCCCCCcc
Q psy238          150 ATRQTY--GRPI-SG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~--~~~~-~~----------~~ei~tg~~p~~~~  175 (218)
                      |+|||+  +... +.          +++|++|..||...
T Consensus       214 y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  252 (320)
T 3a99_A          214 YSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD  252 (320)
T ss_dssp             GSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             CCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh
Confidence            999996  2232 22          68999999999653

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.94  E-value=7.6e-27  Score=198.79  Aligned_cols=156  Identities=14%  Similarity=0.071  Sum_probs=122.8

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|+.||||++......       .+.+|+.+|..+ +||||+++++++.+..    .+|+||||+. ++|.+++....
T Consensus        45 ~~~~~~vAvK~~~~~~~~-------~~~~E~~~l~~l~~HpnIv~l~~~~~~~~----~~~lv~E~~~-g~L~~~l~~~~  112 (432)
T 3p23_A           45 MFDNRDVAVKRILPECFS-------FADREVQLLRESDEHPNVIRYFCTEKDRQ----FQYIAIELCA-ATLQEYVEQKD  112 (432)
T ss_dssp             ESSSSEEEEEEECTTTEE-------ECHHHHHHHHHSCCCTTBCCEEEEEEETT----EEEEEEECCS-EEHHHHHHSSS
T ss_pred             EeCCeEEEEEEECHHHHH-------HHHHHHHHHHhccCCCCcCeEEEEEecCC----EEEEEEECCC-CCHHHHHHhcC
Confidence            457899999999743211       245789999998 8999999999987644    6899999995 69999998654


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---C--CcEEEeecCcccc-----------ccCC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---N--GLVKIGCDTYTHT-----------IENK  145 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~--~~~ki~dfg~~~~-----------~~~~  145 (218)
                      .   .++...++.++.||+.||.|||+  .+|+||||||+|||++.   +  ..++|+|||++..           ....
T Consensus       113 ~---~~~~~~~~~i~~qi~~aL~~LH~--~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~  187 (432)
T 3p23_A          113 F---AHLGLEPITLLQQTTSGLAHLHS--LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVP  187 (432)
T ss_dssp             C---CCCSSCHHHHHHHHHHHHHHHHH--TTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CC
T ss_pred             C---CccchhHHHHHHHHHHHHHHHHH--CcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccC
Confidence            2   34455678899999999999999  77999999999999953   2  3688999998864           3356


Q ss_pred             CcccccccccCC-----CCch----------hhhhhh-CCCCCCcc
Q psy238          146 KYLSATRQTYGR-----PISG----------QYEIVT-KTNNVTEK  175 (218)
Q Consensus       146 ~t~~y~aPE~~~-----~~~~----------~~ei~t-g~~p~~~~  175 (218)
                      ||+.|+|||+..     ..+.          +++|++ |..||...
T Consensus       188 gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~  233 (432)
T 3p23_A          188 GTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKS  233 (432)
T ss_dssp             SCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBST
T ss_pred             CCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchh
Confidence            899999999743     2221          689999 99998644

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.94  E-value=1.1e-25  Score=183.31  Aligned_cols=159  Identities=16%  Similarity=0.190  Sum_probs=129.7

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC--CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE--HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~--hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      .+|..||||++....  ........+.+|+.++..+.  ||||+++++++....    .+++|||+ .+++|.+++... 
T Consensus        50 ~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~----~~~lv~e~-~~~~L~~~l~~~-  121 (313)
T 3cek_A           50 EKKQIYAIKYVNLEE--ADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ----YIYMVMEC-GNIDLNSWLKKK-  121 (313)
T ss_dssp             TTCCEEEEEEEECSS--CCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSS----EEEEEECC-CSEEHHHHHHHC-
T ss_pred             CCCcEEEEEEecccc--ccccchHHHHHHHHHHHhccccCCceEEEEEEeecCC----EEEEEEec-CCCcHHHHHHhc-
Confidence            358899999997542  23456678899999999996  599999999987643    68999995 478999999865 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                         ..+++..++.++.|++.||.|||+  .+|+|+||+|+|||++ ++.++|+|||++..          ....||+.|+
T Consensus       122 ---~~~~~~~~~~i~~qi~~aL~~LH~--~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~  195 (313)
T 3cek_A          122 ---KSIDPWERKSYWKNMLEAVHTIHQ--HGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYM  195 (313)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEEE-TTEEEECCCSSSCC--------------CCGGGC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCceecCCCcccEEEE-CCeEEEeeccccccccCccccccccCCCCCCCcC
Confidence               348999999999999999999999  7799999999999996 48999999999864          2346899999


Q ss_pred             ccccCC-------------CCch----------hhhhhhCCCCCCcch
Q psy238          152 RQTYGR-------------PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       152 aPE~~~-------------~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      |||+..             .++.          +++|++|..||....
T Consensus       196 aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  243 (313)
T 3cek_A          196 PPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII  243 (313)
T ss_dssp             CHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             CHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHH
Confidence            999732             2222          699999999997654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.93  E-value=4.6e-27  Score=191.65  Aligned_cols=161  Identities=19%  Similarity=0.242  Sum_probs=128.5

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||+|++......  ......+.+|+.++..++||||+++++++.+..    .+++||||+++++|.+++....   ..
T Consensus        56 ~~~avk~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~iv~e~~~~~~L~~~l~~~~---~~  126 (319)
T 2y4i_B           56 GEVAIRLIDIERDN--EDQLKAFKREVMAYRQTRHENVVLFMGACMSPP----HLAIITSLCKGRTLYSVVRDAK---IV  126 (319)
T ss_dssp             SSEEEEECCCCSCC--CCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS----CEEEECBCCCSEEHHHHTTSSC---CC
T ss_pred             CeEEEEEeecCCCC--HHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC----ceEEEeecccCCcHHHHHHhcC---CC
Confidence            35899998754211  222345678999999999999999999998754    5899999999999999997643   35


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------------ccCCCccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------------IENKKYLSATRQ  153 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------------~~~~~t~~y~aP  153 (218)
                      +++..++.++.||+.||.|||+  .+|+|+||+|+|||++ ++.++|+|||++..             ....|++.|+||
T Consensus       127 ~~~~~~~~i~~qi~~al~~lH~--~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aP  203 (319)
T 2y4i_B          127 LDVNKTRQIAQEIVKGMGYLHA--KGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAP  203 (319)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHH--TTCCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHh--CCccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccCh
Confidence            8999999999999999999999  7799999999999998 68999999998643             234588999999


Q ss_pred             ccCCC-----------Cch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TYGRP-----------ISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~~~~-----------~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+...           ++.          +++|++|..||.....++
T Consensus       204 E~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~  250 (319)
T 2y4i_B          204 EIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEA  250 (319)
T ss_dssp             HHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHH
T ss_pred             HHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            97332           222          699999999998765443

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.93  E-value=1.5e-25  Score=181.02  Aligned_cols=151  Identities=11%  Similarity=0.073  Sum_probs=121.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++.... .........+.+|+.++..++||||+++++++...+    .+|+||||++|++|.+++... 
T Consensus        52 ~~~~~~~vavK~~~~~~-~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~~~g~~L~~~l~~~-  125 (286)
T 3uqc_A           52 DTALDRQVALTFVDPQG-VLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRA----GGLVVAEWIRGGSLQEVADTS-  125 (286)
T ss_dssp             ETTTTEEEEEEESCTTC-CSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT----EEEEEEECCCEEEHHHHHTTC-
T ss_pred             ecCCCceEEEEEECccc-ccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECC----cEEEEEEecCCCCHHHHHhcC-
Confidence            45679999999998542 222456678899999999999999999999998754    689999999999999998532 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccccCCCccccccccc-----C
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTY-----G  156 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~~~~t~~y~aPE~-----~  156 (218)
                           .....+..++.|++.||.|||+  .||+||||||+|||++.++.++|++++            |++|.-     +
T Consensus       126 -----~~~~~~~~i~~ql~~aL~~lH~--~givH~Dikp~NIll~~~g~~kl~~~~------------~~~~~~~~~Di~  186 (286)
T 3uqc_A          126 -----PSPVGAIRAMQSLAAAADAAHR--AGVALSIDHPSRVRVSIDGDVVLAYPA------------TMPDANPQDDIR  186 (286)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCSGGGEEEETTSCEEECSCC------------CCTTCCHHHHHH
T ss_pred             -----CChHHHHHHHHHHHHHHHHHHH--CCCccCCCCcccEEEcCCCCEEEEecc------------ccCCCCchhHHH
Confidence                 3455788899999999999999  779999999999999999999998554            333321     1


Q ss_pred             CCCchhhhhhhCCCCCCcchh
Q psy238          157 RPISGQYEIVTKTNNVTEKKK  177 (218)
Q Consensus       157 ~~~~~~~ei~tg~~p~~~~~~  177 (218)
                      +-...+|+|++|+.||.+...
T Consensus       187 slG~il~elltg~~Pf~~~~~  207 (286)
T 3uqc_A          187 GIGASLYALLVNRWPLPEAGV  207 (286)
T ss_dssp             HHHHHHHHHHHSEECSCCCSB
T ss_pred             HHHHHHHHHHHCCCCCCcCCc
Confidence            112227999999999986543

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.93  E-value=1.3e-25  Score=181.94  Aligned_cols=160  Identities=13%  Similarity=0.152  Sum_probs=122.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHh-hcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENL-TQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l-~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|..||||++...         ..+.+|+.++ ..++||||+++++++.....+...+++||||+++++|.+++...
T Consensus        39 ~~~~~~~vaiK~~~~~---------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  109 (299)
T 3m2w_A           39 NKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDR  109 (299)
T ss_dssp             ETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHC
T ss_pred             EcCCCcEEEEEEeccc---------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhc
Confidence            4578999999999631         2456778777 55699999999999876433445789999999999999999875


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---CCcEEEeecCccccccCCCcccccccccCC
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---NGLVKIGCDTYTHTIENKKYLSATRQTYGR  157 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~~~~ki~dfg~~~~~~~~~t~~y~aPE~~~  157 (218)
                      ..  ..+++..++.++.|++.||.|||+  .+|+||||+|+|||++.   ++.++|+|||++....... +. .+-.+++
T Consensus       110 ~~--~~~~~~~~~~i~~qi~~~l~~lH~--~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~-~~~Diws  183 (299)
T 3m2w_A          110 GD--QAFTEREASEIMKSIGEAIQYLHS--INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGEK-YD-KSCDMWS  183 (299)
T ss_dssp             TT--CCCBHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTCG-GG-GHHHHHH
T ss_pred             cC--CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCCCHHHEEEecCCCCCcEEEecccccccccccc-CC-chhhHHH
Confidence            42  459999999999999999999999  77999999999999998   7899999999987532211 00 0001111


Q ss_pred             CCchhhhhhhCCCCCCcch
Q psy238          158 PISGQYEIVTKTNNVTEKK  176 (218)
Q Consensus       158 ~~~~~~ei~tg~~p~~~~~  176 (218)
                      -...+++|++|..||....
T Consensus       184 lG~il~el~tg~~pf~~~~  202 (299)
T 3m2w_A          184 LGVIMYILLCGYPPFYSNH  202 (299)
T ss_dssp             HHHHHHHHHHSSCSCCC--
T ss_pred             HHHHHHHHHHCCCCCCCCc
Confidence            2223799999999996543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.91  E-value=1.1e-24  Score=184.41  Aligned_cols=171  Identities=18%  Similarity=0.102  Sum_probs=122.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC-Ccccce---------eeeeec------------C-CCCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH-PNIVKF---------HRYWTD------------T-HNDK   58 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h-p~iv~l---------~~~~~~------------~-~~~~   58 (218)
                      |..+|+.||||++....... ....+.+.+|+.++..+.| ++...+         .+....            . ....
T Consensus        99 ~~~~g~~vAvK~~~~~~~~~-~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (413)
T 3dzo_A           99 DQETGESFEVHVPYFTERPP-SNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWV  177 (413)
T ss_dssp             ETTTCCEEEEEEECCSCC-----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC---------------C
T ss_pred             ecCCCCceEEEEEecCCCcc-HHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCCCccccccCCCccccc
Confidence            56789999999988432221 2335678899999999976 321111         111111            0 0012


Q ss_pred             CeEEEEEeccCCCCHHHHHHhhc---ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEee
Q psy238           59 PRVIFITEYMSSGSLKQFLKRTK---RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGC  135 (218)
Q Consensus        59 ~~~~lv~e~~~~~sL~~~l~~~~---~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~d  135 (218)
                      ..++++|+++ +++|.+++....   .....+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|
T Consensus       178 ~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~--~~iiHrDiKp~NILl~~~~~~kL~D  254 (413)
T 3dzo_A          178 LSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH--YGLVHTYLRPVDIVLDQRGGVFLTG  254 (413)
T ss_dssp             CSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECTTCCEEECC
T ss_pred             cceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh--CCcccCCcccceEEEecCCeEEEEe
Confidence            3467888877 689999986331   112347788899999999999999999  7799999999999999999999999


Q ss_pred             cCcccc-----ccCCCcccccccccC----------CC--Cch----------hhhhhhCCCCCCcchh
Q psy238          136 DTYTHT-----IENKKYLSATRQTYG----------RP--ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       136 fg~~~~-----~~~~~t~~y~aPE~~----------~~--~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||++..     ....| +.|+|||+.          ..  ++.          +|+|++|+.||.....
T Consensus       255 FG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~  322 (413)
T 3dzo_A          255 FEHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAA  322 (413)
T ss_dssp             GGGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGG
T ss_pred             ccceeecCCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcch
Confidence            999765     45567 999999974          21  111          7999999999986544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.88  E-value=2.2e-23  Score=181.99  Aligned_cols=134  Identities=11%  Similarity=0.026  Sum_probs=107.1

Q ss_pred             CCCcEEEEEEeeccccc----ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            4 EEGVEVVWNEVQFSERK----NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~----~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      ..|..+|+|........    ......+.+.+|+.+|..++||||+.+..++....    ..|+||||++|++|.+++..
T Consensus       357 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~----~~~lVmE~~~ggsL~~~l~~  432 (540)
T 3en9_A          357 YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLD----NKRIMMSYINGKLAKDVIED  432 (540)
T ss_dssp             CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETT----TTEEEEECCCSEEHHHHSTT
T ss_pred             ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCC----ccEEEEECCCCCCHHHHHHH
Confidence            35788999987542211    11223456899999999999999995544444332    36999999999999999864


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------------ccC
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------------IEN  144 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------------~~~  144 (218)
                                  +..++.|++.||.|||+  ++|+||||||+|||++.  .++|+|||++..               ...
T Consensus       433 ------------~~~i~~qi~~aL~~LH~--~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~  496 (540)
T 3en9_A          433 ------------NLDIAYKIGEIVGKLHK--NDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAV  496 (540)
T ss_dssp             ------------CTHHHHHHHHHHHHHHH--TTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHH--CcCccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhh
Confidence                        45889999999999999  77999999999999998  999999999875               245


Q ss_pred             CCcccccccccCC
Q psy238          145 KKYLSATRQTYGR  157 (218)
Q Consensus       145 ~~t~~y~aPE~~~  157 (218)
                      .||+.|+|||+..
T Consensus       497 ~GT~~y~APEv~~  509 (540)
T 3en9_A          497 LSTHHEKFDEIWE  509 (540)
T ss_dssp             HHHCGGGHHHHHH
T ss_pred             cCCCCcCCHHHHH
Confidence            7899999999854

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.83  E-value=6e-21  Score=153.78  Aligned_cols=126  Identities=12%  Similarity=0.073  Sum_probs=95.7

Q ss_pred             CCCcEEEEEEeecccccc-----cH---------HHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccC
Q psy238            4 EEGVEVVWNEVQFSERKN-----FK---------AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMS   69 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~-----~~---------~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~   69 (218)
                      .+|..||||++.......     ..         .....+.+|+.+|..++  | +++.+++...     ..|+||||++
T Consensus       112 ~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~~~~~~-----~~~lvmE~~~  183 (282)
T 1zar_A          112 EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPKVYAWE-----GNAVLMELID  183 (282)
T ss_dssp             TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCCEEEEE-----TTEEEEECCC
T ss_pred             CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCeEEecc-----ceEEEEEecC
Confidence            578999999997431110     00         24567889999999998  4 5565555432     3699999999


Q ss_pred             CCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccccCCCccc
Q psy238           70 SGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLS  149 (218)
Q Consensus        70 ~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~~~~t~~  149 (218)
                      |++|.+ +.        .  .....++.|++.||.|||+  .||+||||+|+|||++ ++.++|+|||++..     +..
T Consensus       184 g~~L~~-l~--------~--~~~~~i~~qi~~~l~~lH~--~giiHrDlkp~NILl~-~~~vkl~DFG~a~~-----~~~  244 (282)
T 1zar_A          184 AKELYR-VR--------V--ENPDEVLDMILEEVAKFYH--RGIVHGDLSQYNVLVS-EEGIWIIDFPQSVE-----VGE  244 (282)
T ss_dssp             CEEGGG-CC--------C--SCHHHHHHHHHHHHHHHHH--TTEECSCCSTTSEEEE-TTEEEECCCTTCEE-----TTS
T ss_pred             CCcHHH-cc--------h--hhHHHHHHHHHHHHHHHHH--CCCEeCCCCHHHEEEE-CCcEEEEECCCCeE-----CCC
Confidence            999988 42        1  2245699999999999999  7799999999999999 99999999998864     345


Q ss_pred             ccccccC
Q psy238          150 ATRQTYG  156 (218)
Q Consensus       150 y~aPE~~  156 (218)
                      +.|||+.
T Consensus       245 ~~a~e~l  251 (282)
T 1zar_A          245 EGWREIL  251 (282)
T ss_dssp             TTHHHHH
T ss_pred             CCHHHHH
Confidence            6778763

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.73  E-value=4.1e-18  Score=135.40  Aligned_cols=120  Identities=12%  Similarity=0.116  Sum_probs=87.7

Q ss_pred             CCCcE--EEEEEeecccccc--------------------cHHHHHHHHHHHHHhhcCCCCcc--cceeeeeecCCCCCC
Q psy238            4 EEGVE--VVWNEVQFSERKN--------------------FKAQEEKIQQVFENLTQLEHPNI--VKFHRYWTDTHNDKP   59 (218)
Q Consensus         4 ~~g~~--vAvK~~~~~~~~~--------------------~~~~~~~~~~ei~~l~~l~hp~i--v~l~~~~~~~~~~~~   59 (218)
                      .+|..  ||||++.......                    .......+.+|+.+|..+.|+++  +.++.+  .      
T Consensus        70 ~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~--~------  141 (258)
T 1zth_A           70 FDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTY--M------  141 (258)
T ss_dssp             ETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEE--E------
T ss_pred             CCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEc--C------
Confidence            47888  9999976431110                    01223467889999999988764  334432  1      


Q ss_pred             eEEEEEeccCC-C----CHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCcccCCCCCCcEEEecCCcEEE
Q psy238           60 RVIFITEYMSS-G----SLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLH-SCSPPIIHGNLTCDTIFIQHNGLVKI  133 (218)
Q Consensus        60 ~~~lv~e~~~~-~----sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH-~~~~~iiH~dlkp~NiLl~~~~~~ki  133 (218)
                      ..++||||+.+ |    +|.++...       .++..+..++.|++.||.||| +  .||+||||+|+|||++.  .++|
T Consensus       142 ~~~lVmE~~g~~g~~~~~L~~~~~~-------~~~~~~~~i~~qi~~~l~~lH~~--~givHrDlkp~NILl~~--~~~l  210 (258)
T 1zth_A          142 KNVLLMEFIGEDELPAPTLVELGRE-------LKELDVEGIFNDVVENVKRLYQE--AELVHADLSEYNIMYID--KVYF  210 (258)
T ss_dssp             TTEEEEECCEETTEECCBHHHHGGG-------GGGSCHHHHHHHHHHHHHHHHHT--SCEECSSCSTTSEEESS--SEEE
T ss_pred             CCEEEEEecCCCCCccccHHHHhhc-------cChHHHHHHHHHHHHHHHHHHHH--CCEEeCCCCHHHEEEcC--cEEE
Confidence            25899999942 3    77766432       224467789999999999999 8  66999999999999988  9999


Q ss_pred             eecCccccc
Q psy238          134 GCDTYTHTI  142 (218)
Q Consensus       134 ~dfg~~~~~  142 (218)
                      +|||++...
T Consensus       211 iDFG~a~~~  219 (258)
T 1zth_A          211 IDMGQAVTL  219 (258)
T ss_dssp             CCCTTCEET
T ss_pred             EECcccccC
Confidence            999998754

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.54  E-value=6.6e-15  Score=122.79  Aligned_cols=120  Identities=12%  Similarity=0.086  Sum_probs=79.9

Q ss_pred             CCCcEEEEEEeeccccc--------------ccHH----HHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEE
Q psy238            4 EEGVEVVWNEVQFSERK--------------NFKA----QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFIT   65 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~--------------~~~~----~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~   65 (218)
                      .+|+.||||++......              ....    ..-....|...|.++.+.++....-+...      ..++||
T Consensus       117 ~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp~p~~~~------~~~LVM  190 (397)
T 4gyi_A          117 EKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQS------RHTIVM  190 (397)
T ss_dssp             TTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCEEEEE------TTEEEE
T ss_pred             CCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeecc------CceEEE
Confidence            47999999998642110              0000    11123456777777755554322212111      137999


Q ss_pred             eccCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC----------cEEEee
Q psy238           66 EYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG----------LVKIGC  135 (218)
Q Consensus        66 e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~----------~~ki~d  135 (218)
                      ||++|++|..+..        .  ..+..++.||+.+|.+||+  .|||||||||.|||++.++          .+.|+|
T Consensus       191 E~i~G~~L~~l~~--------~--~~~~~l~~qll~~l~~lH~--~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID  258 (397)
T 4gyi_A          191 SLVDALPMRQVSS--------V--PDPASLYADLIALILRLAK--HGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIX  258 (397)
T ss_dssp             ECCSCEEGGGCCC--------C--SCHHHHHHHHHHHHHHHHH--TTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECC
T ss_pred             EecCCccHhhhcc--------c--HHHHHHHHHHHHHHHHHHH--CCCcCCCCCHHHEEEeCCCCcccccccccceEEEE
Confidence            9999888754321        2  2345678999999999999  6699999999999998876          489999


Q ss_pred             cCcccc
Q psy238          136 DTYTHT  141 (218)
Q Consensus       136 fg~~~~  141 (218)
                      |+-+-.
T Consensus       259 ~~Q~V~  264 (397)
T 4gyi_A          259 FPQMVS  264 (397)
T ss_dssp             CTTCEE
T ss_pred             eCCccc
Confidence            996543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.25  E-value=1.1e-11  Score=97.95  Aligned_cols=120  Identities=9%  Similarity=0.030  Sum_probs=87.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .|..+++|+......    .....+.+|+.++..+. +..++++++++...    +..|+||++++|.+|.+.+.     
T Consensus        36 ~~~~~vlK~~~~~~~----~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~----~~~~lv~e~i~G~~l~~~~~-----  102 (263)
T 3tm0_A           36 ENENLYLKMTDSRYK----GTTYDVEREKDMMLWLEGKLPVPKVLHFERHD----GWSNLLMSEADGVLCSEEYE-----  102 (263)
T ss_dssp             SSCEEEEEEECGGGT----TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEET----TEEEEEEECCSSEEHHHHCC-----
T ss_pred             CCCcEEEEeCCcccC----CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecC----CceEEEEEecCCeehhhccC-----
Confidence            367899998874211    11235778888888874 67788888887653    36899999999999887631     


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------------------------
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCS-----------------------------------------------------  110 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~-----------------------------------------------------  110 (218)
                          +......++.+++.+|..||+..                                                     
T Consensus       103 ----~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  178 (263)
T 3tm0_A          103 ----DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEK  178 (263)
T ss_dssp             ----TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCC
T ss_pred             ----CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcC
Confidence                11223467778888889998710                                                     


Q ss_pred             ----CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 ----PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ----~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                          ..++|+|++|.|||++.+..+.|+||+.+..
T Consensus       179 ~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          179 PEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             CCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             CCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                2388999999999998766667999997754

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.11  E-value=5e-11  Score=93.60  Aligned_cols=115  Identities=12%  Similarity=0.051  Sum_probs=78.2

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCc--ccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPN--IVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~--iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      .+|..|++|+....       ....+..|+.+++.+.+.+  +++++.++...    +..++||+|++|.+|.  +.   
T Consensus        42 ~~g~~~vlK~~~~~-------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~----~~~~~v~e~i~G~~l~--~~---  105 (264)
T 1nd4_A           42 QGRPVLFVKTDLSG-------ALNELQDEAARLSWLATTGVPCAAVLDVVTEA----GRDWLLLGEVPGQDLL--SS---  105 (264)
T ss_dssp             TTSCCEEEEEECSC-------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS----SCEEEEEECCSSEETT--TS---
T ss_pred             CCCCeEEEEeCCcc-------cchhhhHHHHHHHHHHhCCCCCCeEEEeccCC----CCCEEEEEecCCcccC--cC---
Confidence            45778999987632       1134667888888774434  55677776543    3489999999988874  11   


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCC---------------------------------------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCS---------------------------------------------------  110 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---------------------------------------------------  110 (218)
                          ....   ..++.+++..|..||+..                                                   
T Consensus       106 ----~~~~---~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (264)
T 1nd4_A          106 ----HLAP---AEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARM  178 (264)
T ss_dssp             ----CCCH---HHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTC
T ss_pred             ----cCCH---hHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhc
Confidence                0111   244556666666666521                                                   


Q ss_pred             -----CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 -----PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 -----~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                           .+++|+|++|.|||++.++.+.|+||+.+..
T Consensus       179 ~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          179 PDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             CSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             CCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                 1289999999999998776677999998764

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.98  E-value=9.9e-10  Score=90.71  Aligned_cols=126  Identities=13%  Similarity=0.182  Sum_probs=88.0

Q ss_pred             CcEEEEEEee--cccccccHHHHHHHHHHHHHhhcCC--CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            6 GVEVVWNEVQ--FSERKNFKAQEEKIQQVFENLTQLE--HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         6 g~~vAvK~~~--~~~~~~~~~~~~~~~~ei~~l~~l~--hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+++|+..  ....   ......+.+|+.++..+.  +..+++++.++.+... .+..|+||+|++|.++.+..    
T Consensus        61 ~~~~vlr~~~~p~~~~---~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~-~g~~~~vme~v~G~~l~~~~----  132 (359)
T 3dxp_A           61 GQTYVMRAKPGPKSKL---LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESV-IGRAFYIMEFVSGRVLWDQS----  132 (359)
T ss_dssp             SCEEEEECCCC-------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTT-TSSCEEEEECCCCBCCCCTT----
T ss_pred             CceEEEEeCCCCCCCC---CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCc-cCCeEEEEEecCCeecCCCc----
Confidence            4567888765  2210   122346778999988886  4557888888765421 24578999999987774311    


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcC----------------------------------------------------
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSC----------------------------------------------------  109 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~----------------------------------------------------  109 (218)
                        ...++......++.+++..|..||+.                                                    
T Consensus       133 --~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  210 (359)
T 3dxp_A          133 --LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQ  210 (359)
T ss_dssp             --CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCS
T ss_pred             --cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCC
Confidence              12367778888899999999999962                                                    


Q ss_pred             ----CCCcccCCCCCCcEEEecCCc--EEEeecCcccc
Q psy238          110 ----SPPIIHGNLTCDTIFIQHNGL--VKIGCDTYTHT  141 (218)
Q Consensus       110 ----~~~iiH~dlkp~NiLl~~~~~--~ki~dfg~~~~  141 (218)
                          ...++|+|++|.|||++.++.  +.|+||+.+..
T Consensus       211 ~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          211 EDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             TTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             ccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                135899999999999987753  68999998875

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.78  E-value=6.1e-08  Score=76.59  Aligned_cols=118  Identities=12%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .|..+++|+-..       .....+..|..+|..+. +-.+.+++.++.+.+    ..++||++++|.++.+......  
T Consensus        49 ~~~~~~lk~~~~-------~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~----~~~lvme~l~G~~~~~~~~~~~--  115 (272)
T 4gkh_A           49 NAPELFLKHGKG-------SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPD----DAWLLTTAIPGKTAFQVLEEYP--  115 (272)
T ss_dssp             TCCCEEEEEEET-------HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETT----EEEEEEECCCSEEHHHHHHHCG--
T ss_pred             CCeEEEEEECCC-------CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECC----eEEEEEEeeCCccccccccCCH--
Confidence            456788887652       33456778888887773 334777888776643    5799999999888877654321  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------------------------
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCS-----------------------------------------------------  110 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~-----------------------------------------------------  110 (218)
                            .....+..++...|..||+..                                                     
T Consensus       116 ------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  189 (272)
T 4gkh_A          116 ------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPF  189 (272)
T ss_dssp             ------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCC
T ss_pred             ------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccc
Confidence                  112234455555555555421                                                     


Q ss_pred             ---CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 ---PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ---~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                         ..++|+|+.|.|||++.++.+-|+||+.+..
T Consensus       190 ~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          190 SPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             CCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             cCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence               1378999999999999877778999998765

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.59  E-value=5.7e-07  Score=72.67  Aligned_cols=61  Identities=10%  Similarity=0.026  Sum_probs=41.1

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCC---cccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHP---NIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp---~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      |..+++|+-..      ......+..|..+|..+.+.   .+..++.++...   .+..++||++++|.+|..
T Consensus        39 g~~~VlR~~~~------~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~---~g~~~~v~e~i~G~~l~~  102 (306)
T 3tdw_A           39 NGDWVFRFPKS------QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRS---DGNPFVGYRKVQGQILGE  102 (306)
T ss_dssp             TTTEEEEEESS------HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECT---TSCEEEEEECCCSEECHH
T ss_pred             CCEEEEEecCC------chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccC---CCceEEEEeccCCeECch
Confidence            45678887431      23456788999999988642   355666665422   235689999999887765

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.58  E-value=3.1e-07  Score=73.97  Aligned_cols=122  Identities=15%  Similarity=0.124  Sum_probs=80.4

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCc--ccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPN--IVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~--iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      ..+++|+...      ......+.+|..+|..+ .+..  +..++...... ......|+||++++|.+|......    
T Consensus        41 ~~~vlR~~~~------~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~-~~~~~~~~vm~~i~G~~l~~~~~~----  109 (304)
T 3sg8_A           41 RDFIFKFPKH------SRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPS-ETYQMSFAGFTKIKGVPLTPLLLN----  109 (304)
T ss_dssp             TSEEEEEESS------HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCC-SSCSCSCEEEECCCCEECCHHHHH----
T ss_pred             CEEEEEecCC------cchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCC-CCCCcceEEEcccCCeECCccccc----
Confidence            4578887542      23456788899998877 3332  44444443221 111234789999999888653321    


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------------------------
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCS-----------------------------------------------------  110 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~-----------------------------------------------------  110 (218)
                        .++......++.+++..|..||+..                                                     
T Consensus       110 --~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  187 (304)
T 3sg8_A          110 --NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYF  187 (304)
T ss_dssp             --TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             --cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHhccccc
Confidence              2566666667777777777776410                                                     


Q ss_pred             ---CCcccCCCCCCcEEEec--CCcEEEeecCcccc
Q psy238          111 ---PPIIHGNLTCDTIFIQH--NGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ---~~iiH~dlkp~NiLl~~--~~~~ki~dfg~~~~  141 (218)
                         ..++|+|+.|.|||++.  +..+.|+||+.+..
T Consensus       188 ~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~  223 (304)
T 3sg8_A          188 KYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI  223 (304)
T ss_dssp             CCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred             cCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence               23799999999999998  56678999998765

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.78  E-value=0.00067  Score=54.74  Aligned_cols=31  Identities=10%  Similarity=0.070  Sum_probs=27.8

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.|.|||++.++.+.|+||+.+..
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            5699999999999998888999999998754

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.71  E-value=0.00017  Score=58.92  Aligned_cols=31  Identities=10%  Similarity=0.103  Sum_probs=26.2

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..++|+|+.|.|||++++..+.|+||..+..
T Consensus       222 ~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             ceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            4589999999999999655578999998765

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.44  E-value=0.0006  Score=55.12  Aligned_cols=58  Identities=12%  Similarity=0.007  Sum_probs=40.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC---CCcccceeeeeecCCCCCCeEEEEEeccCCCCH
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE---HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSL   73 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~---hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL   73 (218)
                      ++..+++|+....       ....+..|...|..+.   ...+++++.+....    +..++||++++|.++
T Consensus        58 ~~~~~vlK~~~~~-------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~----g~~~lvme~l~G~~~  118 (312)
T 3jr1_A           58 EVQTVFVKINERS-------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQ----GHSFLLLEALNKSKN  118 (312)
T ss_dssp             SSCEEEEEEEEGG-------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECS----SEEEEEEECCCCCCC
T ss_pred             CCCeEEEEeCCcc-------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecC----CceEEEEEeccCCCC
Confidence            4567888877621       2455777888887773   35678888776543    358999999987653

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.43  E-value=0.00031  Score=58.42  Aligned_cols=30  Identities=23%  Similarity=0.431  Sum_probs=25.2

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..++|+|+.|.|||++.++ +.|+||..+..
T Consensus       227 ~~L~HGDl~~~Nil~~~~~-~~lID~e~a~~  256 (397)
T 2olc_A          227 ETLIHGDLHTGSIFASEHE-TKVIDPEFAFY  256 (397)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CceeeCCCCcCcEEEeCCC-eEEEeCccccc
Confidence            5689999999999997764 88999976654

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.32  E-value=0.0012  Score=53.29  Aligned_cols=31  Identities=6%  Similarity=0.008  Sum_probs=27.1

Q ss_pred             CCcccCCCCCCcEEEecC----CcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHN----GLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~----~~~ki~dfg~~~~  141 (218)
                      ..++|+|+.|.|||++.+    +.+.|+||+.+..
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            469999999999999875    6899999998775

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.22  E-value=0.00048  Score=54.65  Aligned_cols=59  Identities=7%  Similarity=0.073  Sum_probs=36.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC---CcccceeeeeecCCCCCCeEEEEEeccCCCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH---PNIVKFHRYWTDTHNDKPRVIFITEYMSSGS   72 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h---p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~s   72 (218)
                      .+.+|+.|++|+.......    ....+..|...|+.+..   ..++.++.+..        -++||++++++.
T Consensus        35 ~l~DG~~~~vK~~~~~~~~----~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~~--------~~lv~e~l~~~~   96 (288)
T 3f7w_A           35 ELADGTPLFVKALPDDAPA----LDGLFRAEALGLDWLGRSFGSPVPQVAGWDD--------RTLAMEWVDERP   96 (288)
T ss_dssp             EETTSCEEEEEECCTTCCC----CTTHHHHHHHHHHHHTCSTTCCSCCEEEEET--------TEEEEECCCCCC
T ss_pred             EECCCCEEEEEEeCCCCcc----hhhHHHHHHHHHHHHHhhCCCCcceEEeccC--------ceEEEEeecccC
Confidence            4578999999987632211    12346678887777732   23555555421        378999987653

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.08  E-value=0.0019  Score=51.46  Aligned_cols=30  Identities=13%  Similarity=0.136  Sum_probs=25.2

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..++|+|+.|.||| ..++.+.|+||..+..
T Consensus       173 ~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          173 LAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             ceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            34899999999999 6667789999987765

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.75  E-value=0.0038  Score=51.76  Aligned_cols=124  Identities=14%  Similarity=0.103  Sum_probs=70.3

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHH---------
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK---------   74 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~---------   74 (218)
                      ++..|++++....  .   .......+|..+++.+. +.-..++++++.+        .+||+|++|.+|.         
T Consensus        81 ~~~~~vlR~~g~~--~---~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~--------g~v~e~i~G~~l~~~~l~~p~~  147 (379)
T 3feg_A           81 EPREVLLRLYGAI--L---QGVDSLVLESVMFAILAERSLGPQLYGVFPE--------GRLEQYIPSRPLKTQELREPVL  147 (379)
T ss_dssp             CCSEEEEEECC--------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT--------EEEEECCSEEECCGGGGGCHHH
T ss_pred             CCCeEEEEECCCc--c---chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC--------ccEEEEecCccCChhHhCCHHH
Confidence            3578999986321  1   12234557888887763 2223566665532        3899999874432         


Q ss_pred             -----HHHHhhccc---C-CCC--CHHHHHHHHHHHHH-------------------HHHHh----hc--CCCCcccCCC
Q psy238           75 -----QFLKRTKRN---V-KKL--PLSAWKRWCSQILS-------------------ALSYL----HS--CSPPIIHGNL  118 (218)
Q Consensus        75 -----~~l~~~~~~---~-~~~--~~~~~~~~~~qi~~-------------------~l~~l----H~--~~~~iiH~dl  118 (218)
                           ..+..-...   . ...  .+..+..|+.++-.                   .+.+|    ..  ....++|+|+
T Consensus       148 ~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~~~~~~~~~~H~D~  227 (379)
T 3feg_A          148 SAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDI  227 (379)
T ss_dssp             HHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHHTSCCCEEEECSCC
T ss_pred             HHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHhhcCCCcEEEcCCC
Confidence                 122211111   0 111  13455555554422                   12222    21  1135899999


Q ss_pred             CCCcEEEecC----CcEEEeecCcccc
Q psy238          119 TCDTIFIQHN----GLVKIGCDTYTHT  141 (218)
Q Consensus       119 kp~NiLl~~~----~~~ki~dfg~~~~  141 (218)
                      .+.|||++.+    +.+.|+||..+..
T Consensus       228 ~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          228 QEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             CGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             CCCeEEEcCCCCccCcEEEEecccCCc
Confidence            9999999876    7899999998875

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.08  E-value=0.0067  Score=50.76  Aligned_cols=30  Identities=13%  Similarity=0.432  Sum_probs=26.8

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..++|+|++|.|||++.++ +.|+||+.+..
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            5699999999999998877 99999988765

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=95.01  E-value=0.0092  Score=47.75  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.|.|||++.+..+.|+||+.+..
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            4589999999999998876668999987765

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=94.78  E-value=0.035  Score=44.39  Aligned_cols=29  Identities=10%  Similarity=0.004  Sum_probs=25.2

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ..++|+|++|.|||++ + .+.|+||+.+..
T Consensus       195 ~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             eeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            4589999999999998 4 899999987765

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=94.57  E-value=0.032  Score=45.24  Aligned_cols=32  Identities=6%  Similarity=0.018  Sum_probs=28.0

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCccccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI  142 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~  142 (218)
                      ..++|+|+.|.|||++.++.+.|+||+.+...
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~  237 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA  237 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence            45899999999999998888999999877663

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=94.54  E-value=0.17  Score=38.41  Aligned_cols=82  Identities=10%  Similarity=-0.061  Sum_probs=56.6

Q ss_pred             CCCcccceeeeeecCCCCCCeEEEEEeccCCC-CHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH-HhhcCCCCcccCC
Q psy238           40 EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSG-SLKQFLKRTKRNVKKLPLSAWKRWCSQILSALS-YLHSCSPPIIHGN  117 (218)
Q Consensus        40 ~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~-sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~-~lH~~~~~iiH~d  117 (218)
                      .||++ .. .+-.+.+    .+.+.++.-+++ ++. .+..       ++....++++.+|+.... ++++    -+|--
T Consensus        48 ~~~~f-~~-~I~~~eD----~~~i~y~~~~~~~~f~-~i~~-------~~~~eKlrll~nl~~L~~~~~~~----r~tf~  109 (219)
T 4ano_A           48 VDPCI-VR-DIDVSED----EVKVVIKPPSSFLTFA-AIRK-------TTLLSRIRAAIHLVSKVKHHSAR----RLIFI  109 (219)
T ss_dssp             SCSSS-EE-EEEECSS----EEEEEEECCTTCEEHH-HHHT-------SCHHHHHHHHHHHHHHHSSCCSS----SEECC
T ss_pred             cCCCC-Ce-EEEEeCC----EEEEEEEcCcccCcHH-HHHh-------cCHHHHHHHHHHHHHHHHHhhhC----ceeEE
Confidence            57777 33 2222222    366666654333 344 3332       788899999999988777 5655    77889


Q ss_pred             CCCCcEEEecCCcEEEeecCcc
Q psy238          118 LTCDTIFIQHNGLVKIGCDTYT  139 (218)
Q Consensus       118 lkp~NiLl~~~~~~ki~dfg~~  139 (218)
                      |+|+||+++.++.++|.-.|+-
T Consensus       110 l~P~NL~f~~~~~p~i~hRGi~  131 (219)
T 4ano_A          110 VCPENLMFNRALEPFFLHVGVK  131 (219)
T ss_dssp             CCGGGEEECTTCCEEESCCEET
T ss_pred             EeCceEEEeCCCcEEEEEcCCc
Confidence            9999999999999999877653

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=94.17  E-value=0.085  Score=39.98  Aligned_cols=83  Identities=11%  Similarity=0.057  Sum_probs=57.7

Q ss_pred             CCCCcccceeeeeecCCCCCCeEEEEEeccC-CCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCC
Q psy238           39 LEHPNIVKFHRYWTDTHNDKPRVIFITEYMS-SGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGN  117 (218)
Q Consensus        39 l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~-~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~d  117 (218)
                      ..||++++. .+-.+.+    .+.+.++.-+ +-++.. +.       .++....++++.+|+....++++    -+|--
T Consensus        42 ~~~~~Fl~~-~I~e~eD----~v~~~y~~~~~~~~f~~-ik-------~~~~~eKlr~l~ni~~l~~~~~~----r~tf~  104 (215)
T 4ann_A           42 QHSPYFIDA-ELTELRD----SFQIHYDINDNHTPFDN-IK-------SFTKNEKLRYLLNIKNLEEVNRT----RYTFV  104 (215)
T ss_dssp             SCCTTBCCE-EEEECSS----EEEEEECCCTTSEEGGG-GG-------GSCHHHHHHHHHHGGGGGGGGGS----SEECC
T ss_pred             ccCCcccce-EEEEccc----EEEEEEEcCcccCCHHH-HH-------hcCHHHHHHHHHHHHHHHHHhcC----ceEEE
Confidence            368888877 2333322    3555555433 223333 22       27888999999999887766665    67889


Q ss_pred             CCCCcEEEecCCcEEEeecCc
Q psy238          118 LTCDTIFIQHNGLVKIGCDTY  138 (218)
Q Consensus       118 lkp~NiLl~~~~~~ki~dfg~  138 (218)
                      |+|+||+++.++.++++-.|+
T Consensus       105 L~P~NL~f~~~~~p~i~~RGi  125 (215)
T 4ann_A          105 LAPDELFFTRDGLPIAKTRGL  125 (215)
T ss_dssp             CSGGGEEECTTSCEEESCCEE
T ss_pred             EecceEEEcCCCCEEEEEccC
Confidence            999999999999999987665

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=93.64  E-value=0.078  Score=45.00  Aligned_cols=54  Identities=15%  Similarity=0.058  Sum_probs=30.6

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcc-cceeeeeecCCCCCCeEEEEEeccCCCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNI-VKFHRYWTDTHNDKPRVIFITEYMSSGS   72 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~i-v~l~~~~~~~~~~~~~~~lv~e~~~~~s   72 (218)
                      +..|++|+..... ....    .-..|..++..+...++ +++++++.  +      .+||+|++|.+
T Consensus       133 ~~~~vLRi~g~~~-~~~i----dR~~E~~vl~~L~~~gl~P~ll~~~~--~------G~v~e~I~G~~  187 (458)
T 2qg7_A          133 QAKYLIRLYGPKT-DEII----NREREKKISCILYNKNIAKKIYVFFT--N------GRIEEFMDGYA  187 (458)
T ss_dssp             TEEEEEEEECC-C-CSCS----CHHHHHHHHHHHTTSSSBCCEEEEET--T------EEEEECCCSEE
T ss_pred             CceEEEEECCCCh-hhhc----CHHHHHHHHHHHHhcCCCCCEEEEeC--C------eEEEEeeCCcc
Confidence            4678888774321 1100    11467777777754443 56776662  1      35999998643

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=93.20  E-value=0.039  Score=45.12  Aligned_cols=30  Identities=13%  Similarity=0.121  Sum_probs=24.7

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .+++|+|+.|.|||++.+. +.|+||..+..
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~  241 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGF  241 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCEE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCCC
Confidence            3589999999999997655 89999987765

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=92.80  E-value=0.075  Score=44.64  Aligned_cols=30  Identities=13%  Similarity=0.138  Sum_probs=24.9

Q ss_pred             CcccCCCCCCcEEEecC----------------------------CcEEEeecCcccc
Q psy238          112 PIIHGNLTCDTIFIQHN----------------------------GLVKIGCDTYTHT  141 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~~----------------------------~~~ki~dfg~~~~  141 (218)
                      .++|+|+.+.|||++.+                            +.+.|+||..+..
T Consensus       250 v~~H~Dl~~gNiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lIDfEya~~  307 (429)
T 1nw1_A          250 TFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASY  307 (429)
T ss_dssp             EEECSCCCGGGEEEEC------------------------------CCEECCCTTCEE
T ss_pred             EEEeCCCCCCeEEeeCCccccccccccccccccccccccccccCCCeEEEEecccCCc
Confidence            48999999999999875                            6789999987765

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=92.26  E-value=0.67  Score=35.27  Aligned_cols=61  Identities=16%  Similarity=0.092  Sum_probs=47.3

Q ss_pred             CCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEee
Q psy238           71 GSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGC  135 (218)
Q Consensus        71 ~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~d  135 (218)
                      -||.++|....   .++++.++|.++.|.+.+|.-+-.. ..-..+=+.|..|++..+|.+.+.+
T Consensus        33 vSL~eIL~~~~---~PlsEEqaWALc~Qc~~~L~~~~~~-~~~~~~i~~~~~i~l~~dG~V~f~~   93 (229)
T 2yle_A           33 LSLEEILRLYN---QPINEEQAWAVCYQCCGSLRAAARR-RQPRHRVRSAAQIRVWRDGAVTLAP   93 (229)
T ss_dssp             EEHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCSGGGEEEETTSCEEECC
T ss_pred             ccHHHHHHHcC---CCcCHHHHHHHHHHHHHHHHhhhhc-ccCCceecCCcceEEecCCceeccc
Confidence            48999999876   5799999999999999998776210 1112344568999999999998875

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=88.03  E-value=0.28  Score=40.62  Aligned_cols=29  Identities=10%  Similarity=0.094  Sum_probs=25.0

Q ss_pred             cccCCCCCCcEEEe------cCCcEEEeecCcccc
Q psy238          113 IIHGNLTCDTIFIQ------HNGLVKIGCDTYTHT  141 (218)
Q Consensus       113 iiH~dlkp~NiLl~------~~~~~ki~dfg~~~~  141 (218)
                      ++|+|+.+.|||+.      .+..+.++||-++..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            57999999999994      457799999998876

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=86.50  E-value=0.37  Score=40.41  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             CcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          112 PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .++|+|+.+.||| +.++.+.++||..+..
T Consensus       263 ~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~  291 (424)
T 3mes_A          263 VFAHNDLQENNLL-QTQNNIRMIDYEYSAI  291 (424)
T ss_dssp             EEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             eEECCCCCcccee-cCCCcEEEEecccCCc
Confidence            4799999999999 7888999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-23
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-21
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-17
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-17
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-17
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	7e-17
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-16
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-16
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-16
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	5e-16
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-15
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-15
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-15
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	6e-15
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-14
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-14
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-14
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-14
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-14
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-14
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-14
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-14
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-14
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-14
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-13
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-13
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-13
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-13
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	6e-13
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	7e-13
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	8e-13
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-12
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-12
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-12
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-12
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-12
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-12
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	6e-12
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	7e-12
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-11
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-11
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-11
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	8e-11
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-10
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	5e-10
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	6e-10
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	7e-10
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-09
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-09
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-09
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-09
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	6e-09
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	5e-08
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	6e-08
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-07
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-07
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-06
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	4e-06
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-05
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	3e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	4e-05
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	5e-05

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (231), Expect = 1e-23
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 8/157 (5%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           +DTE  VEV W E+   +RK  K++ ++ ++  E L  L+HPNIV+F+  W  T   K  
Sbjct: 29  LDTETTVEVAWCEL--QDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKC 86

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           ++ +TE M+SG+LK +LKR K     + +   + WC QIL  L +LH+ +PPIIH +L C
Sbjct: 87  IVLVTELMTSGTLKTYLKRFKV----MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKC 142

Query: 121 DTIFI-QHNGLVKIGCDTYTHTIENKKYLSATRQTYG 156
           D IFI    G VKI  D    T++   +  A   T  
Sbjct: 143 DNIFITGPTGSVKI-GDLGLATLKRASFAKAVIGTPE 178

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 3e-21
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 2   DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRV 61
              +G  +VW E+ +      +A+++ +      L +L+HPNIV+++    D  N    +
Sbjct: 25  RKSDGKILVWKELDYGSMT--EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTT--L 80

Query: 62  IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHS---CSPPIIHGNL 118
             + EY   G L   + +  +  + L      R  +Q+  AL   H        ++H +L
Sbjct: 81  YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDL 140

Query: 119 TCDTIFIQHNGLVKIG 134
               +F+     VK+G
Sbjct: 141 KPANVFLDGKQNVKLG 156

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 1e-17
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
             Q +  +     L +  H NI+ F  Y T      P++  +T++    SL   L   + 
Sbjct: 45  PQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-----PQLAIVTQWCEGSSLYHHLHIIE- 98

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
              K  +        Q    + YLH  +  IIH +L  + IF+  +  VKIG
Sbjct: 99  --TKFEMIKLIDIARQTAQGMDYLH--AKSIIHRDLKSNNIFLHEDLTVKIG 146

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 4e-17
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 7/150 (4%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
            A  +        +TQL H N+V+      +   +K  +  +TEYM+ GSL  +L+   R
Sbjct: 41  DATAQAFLAEASVMTQLRHSNLVQLLGVIVE---EKGGLYIVTEYMAKGSLVDYLRSRGR 97

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI 142
           +V  L      ++   +  A+ YL       +H +L    + +  + + K+     T   
Sbjct: 98  SV--LGGDCLLKFSLDVCEAMEYLE--GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA 153

Query: 143 ENKKYLSATRQTYGRPISGQYEIVTKTNNV 172
            + +        +  P + + +  +  ++V
Sbjct: 154 SSTQDTGKLPVKWTAPEALREKKFSTKSDV 183

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 5e-17
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
            +   A   +I +  + L +   P IV F+  +         +    E+M  GSL Q LK
Sbjct: 41  LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFY----SDGEISICMEHMDGGSLDQVLK 96

Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
           +  R    +P     +    ++  L+YL      I+H ++    I +   G +K+ 
Sbjct: 97  KAGR----IPEQILGKVSIAVIKGLTYLRE-KHKIMHRDVKPSNILVNSRGEIKLC 147

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 7e-17
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 18/166 (10%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
           + +    +        L H NI+ F       +    ++  +++Y   GSL  +L R   
Sbjct: 38  EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--- 94

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHS------CSPPIIHGNLTCDTIFIQHNGLVKIG-- 134
               + +    +      S L++LH         P I H +L    I ++ NG   I   
Sbjct: 95  --YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL 152

Query: 135 -----CDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEK 175
                 D+ T TI+         + Y  P      I  K     ++
Sbjct: 153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKR 198

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 2e-16
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
               + + E      + L   +HPNIVK    +   +N    +  + E+ + G++   + 
Sbjct: 46  DTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENN----LWILIEFCAGGAVDAVML 101

Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             +R    L  S  +  C Q L AL+YLH     IIH +L    I    +G +K+ 
Sbjct: 102 ELER---PLTESQIQVVCKQTLDALNYLHDNK--IIHRDLKAGNILFTLDGDIKLA 152

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 74.3 bits (182), Expect = 2e-16
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
              +   +  ++     + QL HP ++  H  +     DK  ++ I E++S G L   + 
Sbjct: 63  NTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE----DKYEMVLILEFLSGGELFDRIA 118

Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI--QHNGLVKIGCD 136
                  K+  +    +  Q    L ++H  S  I+H ++  + I    +    VKI   
Sbjct: 119 AEDY---KMSEAEVINYMRQACEGLKHMHEHS--IVHLDIKPENIMCETKKASSVKIIDF 173

Query: 137 TYTHTIENKKYLSATRQT--YGRPISGQYEIVTKTNNV 172
                +   + +  T  T  +  P     E V    ++
Sbjct: 174 GLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDM 211

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.9 bits (181), Expect = 2e-16
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 2   DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRV 61
           D      V   ++ +S +++ +  ++ I++V   L +L HPN +++   +   H      
Sbjct: 36  DVRNSEVVAIKKMSYSGKQSNEKWQDIIKEV-RFLQKLRHPNTIQYRGCYLREHT----A 90

Query: 62  IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCD 121
             + EY    +        K     L            L  L+YLHS +  +IH ++   
Sbjct: 91  WLVMEYCLGSASDLLEVHKKP----LQEVEIAAVTHGALQGLAYLHSHN--MIHRDVKAG 144

Query: 122 TIFIQHNGLVKIG 134
            I +   GLVK+G
Sbjct: 145 NILLSEPGLVKLG 157

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 5e-16
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 20  KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
           K      +        + QL+H  +V+ +   T        +  ITEYM +GSL  FLK 
Sbjct: 46  KQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEP-----IYIITEYMENGSLVDFLKT 100

Query: 80  TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYT 139
                 KL ++      +QI   ++++       IH +L    I +      KI      
Sbjct: 101 PSG--IKLTINKLLDMAAQIAEGMAFIEER--NYIHRDLRAANILVSDTLSCKIADFGLA 156

Query: 140 HTIENKKYLSATR 152
             IE+ +Y +   
Sbjct: 157 RLIEDNEYTAREG 169

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 2e-15
 Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 20  KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
           K  +   +  ++V  +    + P+IV+    + + +  +  ++ + E +  G L   ++ 
Sbjct: 43  KMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQ- 101

Query: 80  TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI---QHNGLVKIGCD 136
             R  +             I  A+ YLHS +  I H ++  + +     + N ++K+   
Sbjct: 102 -DRGDQAFTEREASEIMKSIGEAIQYLHSIN--IAHRDVKPENLLYTSKRPNAILKLTDF 158

Query: 137 TYTHTIENKKYLSATRQTYG 156
            +     +   L+    T  
Sbjct: 159 GFAKETTSHNSLTTPCYTPY 178

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 13/174 (7%)

Query: 2   DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRV 61
             ++ ++V    ++  ++   KA  E++ +  + + QL++P IV+              +
Sbjct: 32  MRKKQIDVA---IKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEA-----L 83

Query: 62  IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCD 121
           + + E    G L +FL   +   +++P+S       Q+   + YL       +H +L   
Sbjct: 84  MLVMEMAGGGPLHKFLVGKR---EEIPVSNVAELLHQVSMGMKYLE--EKNFVHRDLAAR 138

Query: 122 TIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEK 175
            + + +    KI     +  +         R     P+             + +
Sbjct: 139 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSR 192

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 2e-15
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 20  KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
           K     E++  +  + +  L H  +V+ +   T     +  +  ITEYM++G L  +L+ 
Sbjct: 37  KEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT----KQRPIFIITEYMANGCLLNYLRE 92

Query: 80  TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYT 139
            +    +         C  +  A+ YL   S   +H +L      +   G+VK+     +
Sbjct: 93  MR---HRFQTQQLLEMCKDVCEAMEYLE--SKQFLHRDLAARNCLVNDQGVVKVSDFGLS 147

Query: 140 HTIENKKYLSATR 152
             + + +Y S+  
Sbjct: 148 RYVLDDEYTSSVG 160

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 6e-15
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 10/141 (7%)

Query: 18  ERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL 77
           + K      E I++       L H N+VKF+ +  + +          EY S G L   +
Sbjct: 39  DMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNI----QYLFLEYCSGGELFDRI 94

Query: 78  KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDT 137
           +        +P    +R+  Q+++ + YLH     I H ++  + + +     +KI    
Sbjct: 95  EPDIG----MPEPDAQRFFHQLMAGVVYLHGIG--ITHRDIKPENLLLDERDNLKISDFG 148

Query: 138 YTHTIENKKYLSATRQTYGRP 158
                          +  G  
Sbjct: 149 LATVFRYNNRERLLNKMCGTL 169

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (168), Expect = 1e-14
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
               + ++E I      + + ++PNIV +   +         +  + EY++ GSL   + 
Sbjct: 54  NLQQQPKKELIINEILVMRENKNPNIVNYLDSYL----VGDELWVVMEYLAGGSLTDVVT 109

Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTY 138
            T  +  ++        C + L AL +LHS    +IH ++  D I +  +G VK+    +
Sbjct: 110 ETCMDEGQI-----AAVCRECLQALEFLHSNQ--VIHRDIKSDNILLGMDGSVKLTDFGF 162

Query: 139 THTIENKKYLSAT 151
              I  ++   +T
Sbjct: 163 CAQITPEQSKRST 175

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 69.3 bits (169), Expect = 1e-14
 Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
               ++ +E +++  + ++ L HP +V  H  +     D   ++ I E+MS G L + + 
Sbjct: 60  MTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFE----DDNEMVMIYEFMSGGELFEKVA 115

Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI--QHNGLVKIGCD 136
                  K+       +  Q+   L ++H  +   +H +L  + I    + +  +K+   
Sbjct: 116 DEH---NKMSEDEAVEYMRQVCKGLCHMHENN--YVHLDLKPENIMFTTKRSNELKLIDF 170

Query: 137 TYTHTIENKKYLSATRQTYG 156
             T  ++ K+ +  T  T  
Sbjct: 171 GLTAHLDPKQSVKVTTGTAE 190

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (166), Expect = 2e-14
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
             + E+  +    + +++HPN+V+     T     +P    ITE+M+ G+L  +L+   R
Sbjct: 54  TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR----EPPFYIITEFMTYGNLLDYLRECNR 109

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI 142
             +++         +QI SA+ YL       IH +L      +  N LVK+     +  +
Sbjct: 110 --QEVSAVVLLYMATQISSAMEYLEK--KNFIHRDLAARNCLVGENHLVKVADFGLSRLM 165

Query: 143 ENKKYLSATR 152
               Y +   
Sbjct: 166 TGDTYTAHAG 175

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 2e-14
 Identities = 34/166 (20%), Positives = 53/166 (31%), Gaps = 26/166 (15%)

Query: 7   VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITE 66
           V+++      +ER+     E K+     N     H NIV      T         + ITE
Sbjct: 58  VKMLKPSAHLTEREALM-SELKVLSYLGN-----HMNIVNLLGACTI----GGPTLVITE 107

Query: 67  YMSSGSLKQFLKRTKRNV--------------KKLPLSAWKRWCSQILSALSYLHSCSPP 112
           Y   G L  FL+R + +                 L L     +  Q+   +++L S    
Sbjct: 108 YCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK--N 165

Query: 113 IIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRP 158
            IH +L    I + H  + KI        I+N              
Sbjct: 166 CIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPV 211

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 13/141 (9%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
           +K  + +E  ++     L +++HPNIV     +         +  I + +S G L   + 
Sbjct: 44  KKALEGKEGSMENEIAVLHKIKHPNIVALDDIYE----SGGHLYLIMQLVSGGELFDRIV 99

Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI---QHNGLVKIGC 135
                          R   Q+L A+ YLH     I+H +L  + +       +  + I  
Sbjct: 100 EKGF----YTERDASRLIFQVLDAVKYLHDL--GIVHRDLKPENLLYYSLDEDSKIMISD 153

Query: 136 DTYTHTIENKKYLSATRQTYG 156
              +   +    LS    T G
Sbjct: 154 FGLSKMEDPGSVLSTACGTPG 174

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 2e-14
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
              E ++++  E  + L HPNI++ + Y+ D      RV  I EY   G++ + L++  +
Sbjct: 47  AGVEHQLRREVEIQSHLRHPNILRLYGYFHD----ATRVYLILEYAPLGTVYRELQKLSK 102

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
                       + +++ +ALSY HS    +IH ++  + + +   G +KI 
Sbjct: 103 ----FDEQRTATYITELANALSYCHSK--RVIHRDIKPENLLLGSAGELKIA 148

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 8/166 (4%)

Query: 2   DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRV 61
           D     +V    ++    ++  +   + ++  +N   L HP IV  +          P  
Sbjct: 28  DLRLHRDVAVKVLRADLARD-PSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 86

Query: 62  IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCD 121
             + EY+   +L+  +         +         +    AL++       IIH ++   
Sbjct: 87  YIVMEYVDGVTLRDIVHTEGP----MTPKRAIEVIADACQALNFS--HQNGIIHRDVKPA 140

Query: 122 TIFIQHNGLVKIG-CDTYTHTIENKKYLSATRQTYGRPISGQYEIV 166
            I I     VK+          ++   ++ T    G       E  
Sbjct: 141 NIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA 186

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 4e-14
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 13/118 (11%)

Query: 19  RKNFKAQEEKIQQVFEN---LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
            K    +E K+  V      +++L+HP  VK +     T  D  ++ F   Y  +G L +
Sbjct: 42  EKRHIIKENKVPYVTRERDVMSRLDHPFFVKLY----FTFQDDEKLYFGLSYAKNGELLK 97

Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           ++++          +  + + ++I+SAL YLH     IIH +L  + I +  +  ++I
Sbjct: 98  YIRKIGS----FDETCTRFYTAEIVSALEYLH--GKGIIHRDLKPENILLNEDMHIQI 149

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
           + Q          + Q +HPN++      T        V+ ITE+M +GSL  F    ++
Sbjct: 68  EKQRRDFLSEASIMGQFDHPNVIHLEGVVTK----STPVMIITEFMENGSLDSF---LRQ 120

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI 142
           N  +  +         I + + YL       +H +L    I +  N + K+     +  +
Sbjct: 121 NDGQFTVIQLVGMLRGIAAGMKYLADM--NYVHRDLAARNILVNSNLVCKVSDFGLSRFL 178

Query: 143 ENKKYLSATRQTYGRPISGQY 163
           E+           G  I  ++
Sbjct: 179 EDDTSDPTYTSALGGKIPIRW 199

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
              EE   +  E + +L HP +V+ +        ++  +  + E+M  G L  +    + 
Sbjct: 41  AMSEEDFIEEAEVMMKLSHPKLVQLYGVCL----EQAPICLVFEFMEHGCLSDY---LRT 93

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI 142
                        C  +   ++YL      +IH +L      +  N ++K+  D      
Sbjct: 94  QRGLFAAETLLGMCLDVCEGMAYL--EEACVIHRDLAARNCLVGENQVIKV-SDFGMTRF 150

Query: 143 ENKKYLSATRQTYGRP 158
                 +++  T    
Sbjct: 151 VLDDQYTSSTGTKFPV 166

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 1e-13
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 20  KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
           K     +  +++    L    H NI+  H  +         ++ I E++S   + + +  
Sbjct: 39  KVKGTDQVLVKKEISILNIARHRNILHLHESFE----SMEELVMIFEFISGLDIFERINT 94

Query: 80  TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           +     +L       +  Q+  AL +LHS    I H ++  + I  Q      I
Sbjct: 95  SA---FELNEREIVSYVHQVCEALQFLHSH--NIGHFDIRPENIIYQTRRSSTI 143

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 21/119 (17%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 20  KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDT--HNDKPRVIFITEYMSSGSLKQFL 77
           K     +    +  + + +L+H NIV+   ++  +    D+  +  + +Y+     +   
Sbjct: 51  KKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVAR 110

Query: 78  KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
             ++   + LP+   K +  Q+  +L+Y+HS    I H ++    + +  +  V   CD
Sbjct: 111 HYSRAK-QTLPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLLLDPDTAVLKLCD 166

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 13/160 (8%)

Query: 19  RKNFKAQEEKIQQVF---ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           + +  +Q E +         +  L+H N+++ +          P +  +TE    GSL  
Sbjct: 45  KPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-----PPMKMVTELAPLGSL-- 97

Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGC 135
            L R +++     L    R+  Q+   + YL   S   IH +L    + +    LVKIG 
Sbjct: 98  -LDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE--SKRFIHRDLAARNLLLATRDLVKIGD 154

Query: 136 DTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEK 175
                 +         ++    P +       KT   +  
Sbjct: 155 FGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHA 194

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 4e-13
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 10/130 (7%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
            +  EK  Q    + Q +HP+IVK     T+       V  I E  + G L+ F    + 
Sbjct: 49  DSVREKFLQEALTMRQFDHPHIVKLIGVITENP-----VWIIMELCTLGELRSF---LQV 100

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI 142
               L L++   +  Q+ +AL+YL   S   +H ++    + +  N  VK+G    +  +
Sbjct: 101 RKYSLDLASLILYAYQLSTALAYLE--SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 158

Query: 143 ENKKYLSATR 152
           E+  Y  A++
Sbjct: 159 EDSTYYKASK 168

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 63.9 bits (155), Expect = 5e-13
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 11/147 (7%)

Query: 19  RKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL 77
            +  +   E   +  + L ++  HPNI++    +            + + M  G L  +L
Sbjct: 46  AEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTF----FFLVFDLMKKGELFDYL 101

Query: 78  KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDT 137
                    L     ++    +L  +  LH     I+H +L  + I +  +  +K+    
Sbjct: 102 TEKVT----LSEKETRKIMRALLEVICALHKL--NIVHRDLKPENILLDDDMNIKLTDFG 155

Query: 138 YTHTIENKKYLSATRQTYGRPISGQYE 164
           ++  ++  + L     T         E
Sbjct: 156 FSCQLDPGEKLREVCGTPSYLAPEIIE 182

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 6e-13
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 20  KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
           K      E   Q  + + +L H  +V+ +   ++       +  +TEYMS GSL  FLK 
Sbjct: 50  KPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-----EPIYIVTEYMSKGSLLDFLKG 104

Query: 80  TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYT 139
                 +LP        +QI S ++Y+       +H +L    I +  N + K+      
Sbjct: 105 ETGKYLRLPQL--VDMAAQIASGMAYVERM--NYVHRDLRAANILVGENLVCKVADFGLA 160

Query: 140 HTIENKKYLSAT 151
             IE+ +Y +  
Sbjct: 161 RLIEDNEYTARQ 172

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 7e-13
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 31/171 (18%)

Query: 7   VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITE 66
           V+++  +   SER+   ++ + + Q+        H NIV      T        +  I E
Sbjct: 72  VKMLKEKADSSEREALMSELKMMTQL------GSHENIVNLLGACTL----SGPIYLIFE 121

Query: 67  YMSSGSLKQFLKRTKR-------------------NVKKLPLSAWKRWCSQILSALSYLH 107
           Y   G L  +L+  +                    ++  L       +  Q+   + +L 
Sbjct: 122 YCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE 181

Query: 108 SCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRP 158
                 +H +L    + + H  +VKI        I +              
Sbjct: 182 --FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPV 230

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 8e-13
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 11/119 (9%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
                 N  A ++++      + QL++P IV+          +    + + E    G L 
Sbjct: 41  ILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-----EAESWMLVMEMAELGPLN 95

Query: 75  QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
           ++L++ +     +          Q+   + YL       +H +L    + +      KI
Sbjct: 96  KYLQQNRH----VKDKNIIELVHQVSMGMKYLEES--NFVHRDLAARNVLLVTQHYAKI 148

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 1e-12
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 4/140 (2%)

Query: 17  SERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF 76
           +  +       +   V  +L   EHPN+V+     T +  D+   + +        L  +
Sbjct: 45  TGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTY 104

Query: 77  LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
           L +       +P    K    Q+L  L +LHS    ++H +L    I +  +G +K+   
Sbjct: 105 LDKVPE--PGVPTETIKDMMFQLLRGLDFLHSH--RVVHRDLKPQNILVTSSGQIKLADF 160

Query: 137 TYTHTIENKKYLSATRQTYG 156
                   +  L++   T  
Sbjct: 161 GLARIYSFQMALTSVVVTLW 180

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.6 bits (151), Expect = 2e-12
 Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 26/160 (16%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
            +     +   Q+    + + ++PNIVK              +  + EYM+ G L +FL+
Sbjct: 53  EEASADMQADFQREAALMAEFDNPNIVKLLGVCAV----GKPMCLLFEYMAYGDLNEFLR 108

Query: 79  RTKRNV--------------------KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNL 118
               +                       L  +       Q+ + ++YL       +H +L
Sbjct: 109 SMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER--KFVHRDL 166

Query: 119 TCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRP 158
                 +  N +VKI     +  I +  Y  A        
Sbjct: 167 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPI 206

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 2e-12
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 8/136 (5%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
           R     +  +       +    HPN++        +       + +  YM  G L+ F++
Sbjct: 65  RITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG---SPLVVLPYMKHGDLRNFIR 121

Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTY 138
               N     +     +  Q+   + +L S     +H +L      +     VK+     
Sbjct: 122 NETHN---PTVKDLIGFGLQVAKGMKFLAS--KKFVHRDLAARNCMLDEKFTVKVADFGL 176

Query: 139 THTIENKKYLSATRQT 154
              + +K++ S   +T
Sbjct: 177 ARDMYDKEFDSVHNKT 192

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 2e-12
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 10/135 (7%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
              +         ++          E  + +        EHP +      +      K  
Sbjct: 22  EFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQ----TKEN 77

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           + F+ EY++ G L   ++   +      LS    + ++I+  L +LHS    I++ +L  
Sbjct: 78  LFFVMEYLNGGDLMYHIQSCHK----FDLSRATFYAAEIILGLQFLHSKG--IVYRDLKL 131

Query: 121 DTIFIQHNGLVKIGC 135
           D I +  +G +KI  
Sbjct: 132 DNILLDKDGHIKIAD 146

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 3e-12
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 12/140 (8%)

Query: 25  QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
           +  +       + +    ++V+     +         + I E M+ G LK +L+  +  +
Sbjct: 66  ERIEFLNEASVMKEFNCHHVVRLLGVVSQ----GQPTLVIMELMTRGDLKSYLRSLRPAM 121

Query: 85  KKLPLSAWKRW------CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTY 138
              P+ A            +I   ++YL++     +H +L      +  +  VKIG    
Sbjct: 122 ANNPVLAPPSLSKMIQMAGEIADGMAYLNAN--KFVHRDLAARNCMVAEDFTVKIGDFGM 179

Query: 139 THTIENKKYLSATRQTYGRP 158
           T  I    Y     +     
Sbjct: 180 TRDIYETDYYRKGGKGLLPV 199

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 4e-12
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
            D    V V   ++   E + +    ++  +  + L +  H NI+  +        ++ +
Sbjct: 28  YDNVNKVRVAIKKISPFEHQTYC---QRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 84

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
            +++  ++    L + LK      + L       +  QIL  L Y+HS    ++H +L  
Sbjct: 85  DVYLVTHLMGADLYKLLKT-----QHLSNDHICYFLYQILRGLKYIHSA--NVLHRDLKP 137

Query: 121 DTIFIQHNGLVKI 133
             + +     +KI
Sbjct: 138 SNLLLNTTCDLKI 150

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (149), Expect = 6e-12
 Identities = 23/161 (14%), Positives = 56/161 (34%), Gaps = 14/161 (8%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
           +  + K  +      + +   ++  + P IV     +        ++ FI + M+ G L 
Sbjct: 40  KRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFH----TPDKLSFILDLMNGGDLH 95

Query: 75  QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
             L +     +       + + ++I+  L ++H  +  +++ +L    I +  +G V+I 
Sbjct: 96  YHLSQHGVFSEAD----MRFYAAEIILGLEHMH--NRFVVYRDLKPANILLDEHGHVRIS 149

Query: 135 CDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEK 175
                     KK       + G       E++ K       
Sbjct: 150 DLGLACDFSKKK----PHASVGTHGYMAPEVLQKGVAYDSS 186

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 7e-12
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 24/164 (14%)

Query: 7   VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITE 66
           V+++ ++    +  +  ++ E ++ +       +H NI+      T        +  I E
Sbjct: 50  VKMLKSDATEKDLSDLISEMEMMKMI------GKHKNIINLLGACTQ----DGPLYVIVE 99

Query: 67  YMSSGSLKQFLKRTKRNV------------KKLPLSAWKRWCSQILSALSYLHSCSPPII 114
           Y S G+L+++L+  +               ++L          Q+   + YL S     I
Sbjct: 100 YASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS--KKCI 157

Query: 115 HGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRP 158
           H +L    + +  + ++KI        I +  Y   T       
Sbjct: 158 HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV 201

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 1e-11
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 11/151 (7%)

Query: 25  QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
             ++I      +  +++P++ +              V  IT+ M  G L   L   + + 
Sbjct: 54  ANKEILDEAYVMASVDNPHVCRLLGICLT-----STVQLITQLMPFGCL---LDYVREHK 105

Query: 85  KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIEN 144
             +       WC QI   ++YL      ++H +L    + ++    VKI        +  
Sbjct: 106 DNIGSQYLLNWCVQIAKGMNYLEDR--RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 163

Query: 145 KKYLSATRQTYGRPISGQYEIVTKTNNVTEK 175
           ++                 E +      T +
Sbjct: 164 EEKEYHAEGGKVPIKWMALESI-LHRIYTHQ 193

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 1e-11
 Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 17/156 (10%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
              E          + ++   +    H N+V      T        ++ I E+   G+L 
Sbjct: 50  MLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG---PLMVIVEFCKFGNLS 106

Query: 75  QFLKRTKRNV------------KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDT 122
            +L+  +                 L L     +  Q+   + +L   S   IH +L    
Sbjct: 107 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA--SRKCIHRDLAARN 164

Query: 123 IFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRP 158
           I +    +VKI        I                
Sbjct: 165 ILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPL 200

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 19/147 (12%)

Query: 23  KAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR-- 79
           K          E L +L  HPNI+            +  +    EY   G+L  FL++  
Sbjct: 51  KDDHRDFAGELEVLCKLGHHPNIINLLGACEH----RGYLYLAIEYAPHGNLLDFLRKSR 106

Query: 80  ----------TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
                            L       + + +   + YL       IH +L    I +  N 
Sbjct: 107 VLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL--SQKQFIHRDLAARNILVGENY 164

Query: 130 LVKIGCDTYTHTIENKKYLSATRQTYG 156
           + KI     +   E     +  R    
Sbjct: 165 VAKIADFGLSRGQEVYVKKTMGRLPVR 191

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 8e-11
 Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 10/124 (8%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDT----HNDKPRVIFITEYMSS 70
           +       +       +  + L  L+H N+V             +  K  +  + ++   
Sbjct: 42  KVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH 101

Query: 71  GSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL 130
                          K  LS  KR    +L+ L Y+H     I+H ++    + I  +G+
Sbjct: 102 DLAGLLSNVLV----KFTLSEIKRVMQMLLNGLYYIHRN--KILHRDMKAANVLITRDGV 155

Query: 131 VKIG 134
           +K+ 
Sbjct: 156 LKLA 159

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.6 bits (136), Expect = 3e-10
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 10/125 (8%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
             Q E        L+ + HP I++       T  D  ++  I +Y+  G L   L++++R
Sbjct: 45  LKQVEHTNDERLMLSIVTHPFIIRMW----GTFQDAQQIFMIMDYIEGGELFSLLRKSQR 100

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI 142
                P    K + +++  AL YLHS    II+ +L  + I +  NG +KI    +   +
Sbjct: 101 F----PNPVAKFYAAEVCLALEYLHS--KDIIYRDLKPENILLDKNGHIKITDFGFAKYV 154

Query: 143 ENKKY 147
            +  Y
Sbjct: 155 PDVTY 159

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.0 bits (134), Expect = 5e-10
 Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 21  NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT 80
             K +  ++    +    ++    +   R+      +    + + E +       F   +
Sbjct: 41  CVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGA---EGDYNVMVMELLGPSLEDLFNFCS 97

Query: 81  KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
           ++      L        Q++S + Y+HS +   IH ++  D   +    
Sbjct: 98  RK----FSLKTVLLLADQMISRIEYIHSKN--FIHRDVKPDNFLMGLGK 140

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 6e-10
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 19  RKNFKAQEEKIQQVF---ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
           RK     ++++         L    HP +      +        R+ F+ EY + G L  
Sbjct: 39  RKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT----HDRLCFVMEYANGGELFF 94

Query: 76  FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
            L R +           + + ++I+SAL YLHS    +++ ++  + + +  +G +KI
Sbjct: 95  HLSRERV----FTEERARFYGAEIVSALEYLHS--RDVVYRDIKLENLMLDKDGHIKI 146

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 7e-10
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 9/141 (6%)

Query: 19  RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
               + Q          + Q  H NI++         +    ++ ITEYM +G+     K
Sbjct: 46  AGYTEKQRVDFLGEAGIMGQFSHHNIIRLE----GVISKYKPMMIITEYMENGA---LDK 98

Query: 79  RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTY 138
             +    +  +         I + + YL +     +H +L    I +  N + K+     
Sbjct: 99  FLREKDGEFSVLQLVGMLRGIAAGMKYLAN--MNYVHRDLAARNILVNSNLVCKVSDFGL 156

Query: 139 THTIENKKYLSATRQTYGRPI 159
           +  +E+    + T      PI
Sbjct: 157 SRVLEDDPEATYTTSGGKIPI 177

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
           +       +       +    L +L HPNIVK        +      +++        LK
Sbjct: 34  KIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENK-----LYLVFEFLHQDLK 88

Query: 75  QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
           +F+      +  +PL   K +  Q+L  L++ HS    ++H +L    + I   G +K+ 
Sbjct: 89  KFMDA--SALTGIPLPLIKSYLFQLLQGLAFCHSH--RVLHRDLKPQNLLINTEGAIKLA 144

Query: 135 CD 136
             
Sbjct: 145 DF 146

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
           +    K  +       +    L +L+H NIVK +    D  + K R++ + E++     K
Sbjct: 33  KIRLEKEDEGIPSTTIREISILKELKHSNIVKLY----DVIHTKKRLVLVFEHLDQDLKK 88

Query: 75  QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
                       L     K +  Q+L+ ++Y H     ++H +L    + I   G +KI
Sbjct: 89  LLDVCEGG----LESVTAKSFLLQLLNGIAYCH--DRRVLHRDLKPQNLLINREGELKI 141

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 2   DTEEGVEVVWNEVQFSERKNFKAQ-EEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
           D      V   +++   R   K        +  + L +L HPNI+       D    K  
Sbjct: 19  DKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLL----DAFGHKSN 74

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           +  + ++M +         +      L  S  K +    L  L YLH     I+H +L  
Sbjct: 75  ISLVFDFMETDLEVIIKDNSLV----LTPSHIKAYMLMTLQGLEYLHQH--WILHRDLKP 128

Query: 121 DTIFIQHNGLVKIGCDTYTHTIEN 144
           + + +  NG++K+       +  +
Sbjct: 129 NNLLLDENGVLKLADFGLAKSFGS 152

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 6e-09
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 11/135 (8%)

Query: 2   DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH-PNIVKFHRYWTDTHNDKPR 60
             + G       ++ +         E  +   + L  +   P +V  H  +      + +
Sbjct: 48  GHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT----ETK 103

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           +  I +Y++ G L   L + +R          + +  +I+ AL +LH     II+ ++  
Sbjct: 104 LHLILDYINGGELFTHLSQRER----FTEHEVQIYVGEIVLALEHLH--KLGIIYRDIKL 157

Query: 121 DTIFIQHNGLVKIGC 135
           + I +  NG V +  
Sbjct: 158 ENILLDSNGHVVLTD 172

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 18/160 (11%), Positives = 44/160 (27%), Gaps = 13/160 (8%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFE----NLTQLEHPNIVKFHRYWTDTHN 56
           +   + + V    V+     ++       +   E             +++      D   
Sbjct: 24  IRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL----DWFE 79

Query: 57  DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
                + I E              +     L     + +  Q+L A+ + H+C   ++H 
Sbjct: 80  RPDSFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHNC--GVLHR 134

Query: 117 NLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYG 156
           ++  + I I  N       D  +  +      +    T  
Sbjct: 135 DIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRV 174

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (119), Expect = 5e-08
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 11/135 (8%)

Query: 1   MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
              E G       +   +    K  E  + +    L  +  P +VK    + D  N    
Sbjct: 61  KHKESGNHYAMKILDKQKVVKLKQIEHTLNEK-RILQAVNFPFLVKLEFSFKDNSN---- 115

Query: 61  VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
           +  + EY++ G +   L+R  R          + + +QI+    YLHS    +I+ +L  
Sbjct: 116 LYMVMEYVAGGEMFSHLRRIGR----FSEPHARFYAAQIVLTFEYLHSLD--LIYRDLKP 169

Query: 121 DTIFIQHNGLVKIGC 135
           + + I   G +++  
Sbjct: 170 ENLLIDQQGYIQVTD 184

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 6e-08
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 6/136 (4%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
           +   ++  +    L  + H N++     +T          F       G+    L + ++
Sbjct: 58  ELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEK 117

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTI 142
               L     +    Q+L  L Y+H+      H +L    + +  +  +KI         
Sbjct: 118 ----LGEDRIQFLVYQMLKGLRYIHAAGII--HRDLKPGNLAVNEDCELKILDFGLARQA 171

Query: 143 ENKKYLSATRQTYGRP 158
           +++       + Y  P
Sbjct: 172 DSEMTGYVVTRWYRAP 187

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 16/155 (10%)

Query: 23  KAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK 81
             +++KI++  + L  L   PNI+       D  +  P ++F  E++++   KQ  +   
Sbjct: 70  PVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF--EHVNNTDFKQLYQT-- 125

Query: 82  RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG----LVKIGCDT 137
                L     + +  +IL AL Y HS    I+H ++    + I H      L+  G   
Sbjct: 126 -----LTDYDIRFYMYEILKALDYCHSM--GIMHRDVKPHNVMIDHEHRKLRLIDWGLAE 178

Query: 138 YTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNV 172
           + H  +      A+R   G  +   Y++   + ++
Sbjct: 179 FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDM 213

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 2   DTEEGVEVVWNEV--QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKP 59
           +   G++     +  + ++        E I++    L +++HPN++  H  +     +K 
Sbjct: 31  EKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE----NKT 86

Query: 60  RVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLT 119
            VI I E ++ G L  FL   +     L       +  QIL+ + YLH  S  I H +L 
Sbjct: 87  DVILILELVAGGELFDFLAEKES----LTEEEATEFLKQILNGVYYLH--SLQIAHFDLK 140

Query: 120 CDTIFIQHNGLVK 132
            + I +    + K
Sbjct: 141 PENIMLLDRNVPK 153

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 21/124 (16%)

Query: 10  VWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMS 69
           V  +  + +           +  F  L +L+   + K + +  +          + E + 
Sbjct: 42  VKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWEGN--------AVLMELID 93

Query: 70  SGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
           +  L +             +         IL  ++  +     I+HG+L+   + +   G
Sbjct: 94  AKELYRV-----------RVENPDEVLDMILEEVAKFYHR--GIVHGDLSQYNVLVSEEG 140

Query: 130 LVKI 133
           +  I
Sbjct: 141 IWII 144

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
           +     + +       +    L +L+H NIV+ H               + E+      K
Sbjct: 34  RVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKL----TLVFEFCDQDLKK 89

Query: 75  QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
            F                K +  Q+L  L + HS    ++H +L    + I  NG +K+ 
Sbjct: 90  YFDSCNGDL----DPEIVKSFLFQLLKGLGFCHSR--NVLHRDLKPQNLLINRNGELKLA 143

Query: 135 C 135
            
Sbjct: 144 N 144

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 9/113 (7%), Positives = 33/113 (29%), Gaps = 9/113 (7%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
           ++   +++  +     L     +    Y+     +    + + + +              
Sbjct: 41  RSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQ---EGLHNVLVIDLLGPSLEDLL----DL 93

Query: 83  NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGC 135
             +K  +        Q+L+ +  +H  S  +++ ++  D   I          
Sbjct: 94  CGRKFSVKTVAMAAKQMLARVQSIHEKS--LVYRDIKPDNFLIGRPNSKNANM 144

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 34  ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWK 93
                +   +I+K   ++     +   V+ + E +    L    K   R +   PL   K
Sbjct: 72  TKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGI---PLIYVK 128

Query: 94  RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
           +   Q+L  L Y+H     IIH ++  + + ++     +    
Sbjct: 129 QISKQLLLGLDYMH-RRCGIIHTDIKPENVLMEIVDSPENLIQ 170

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 11/144 (7%)

Query: 15  QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTD--THNDKPRVIFITEYMSSGS 72
           + S     +   ++  +    +  + H NI+     +T   T  +   V  + E M +  
Sbjct: 49  KLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANL 108

Query: 73  LKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVK 132
            +                       Q+L  + +LHS    IIH +L    I ++ +  +K
Sbjct: 109 CQVIQMEL-------DHERMSYLLYQMLCGIKHLHSA--GIIHRDLKPSNIVVKSDCTLK 159

Query: 133 IGCDTYTHTIENKKYLSATRQTYG 156
           I       T      ++    T  
Sbjct: 160 ILDFGLARTAGTSFMMTPYVVTRY 183

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 23  KAQEEKIQQVFENLTQLEHPNIVKFHRYWTD-THNDKPRVIFITEYMSSGSLKQFLKRTK 81
               ++  +    L  ++H N++     +T     ++   +++  ++    L   +K   
Sbjct: 58  IIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC-- 115

Query: 82  RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT 141
              +KL     +    QIL  L Y+HS    IIH +L    + +  +  +KI        
Sbjct: 116 ---QKLTDDHVQFLIYQILRGLKYIHSAD--IIHRDLKPSNLAVNEDCELKILDFGLARH 170

Query: 142 IENKKYLSATRQTYGRP 158
            +++       + Y  P
Sbjct: 171 TDDEMTGYVATRWYRAP 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.97
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.97
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.97
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.97
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.97
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.97
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.97
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.97
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.97
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.97
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.97
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.97
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.97
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.97
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.96
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.91
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.8
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.54
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.16
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.58
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.34
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.0
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.91

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-38  Score=250.08  Aligned_cols=168  Identities=35%  Similarity=0.539  Sum_probs=143.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||.+....  ......+.+.+|+++|+.++|||||+++++|.+...+...+|+||||+++|+|.+++....
T Consensus        30 ~~~~~~~va~K~i~~~~--~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~~  107 (270)
T d1t4ha_          30 DTETTVEVAWCELQDRK--LTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK  107 (270)
T ss_dssp             ETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHS
T ss_pred             ECCCCeEEEEEEEchhh--CCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhccc
Confidence            56789999999997542  2345567899999999999999999999999875555567899999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--cccCCCCCCcEEEe-cCCcEEEeecCcccc------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPP--IIHGNLTCDTIFIQ-HNGLVKIGCDTYTHT------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~--iiH~dlkp~NiLl~-~~~~~ki~dfg~~~~------~~~~~t~~y~a  152 (218)
                          .+++..++.++.||+.||.|||+  ++  |+||||||+|||++ .++.++|+|||++..      ....||+.|+|
T Consensus       108 ----~~~~~~~~~~~~qi~~gl~yLH~--~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~a  181 (270)
T d1t4ha_         108 ----VMKIKVLRSWCRQILKGLQFLHT--RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMA  181 (270)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHT--SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCC
T ss_pred             ----cccHHHHHHHHHHHHHHHHHHHH--CCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCccccC
Confidence                49999999999999999999999  66  99999999999996 579999999999975      45689999999


Q ss_pred             cccCC-CCch----------hhhhhhCCCCCCcchh
Q psy238          153 QTYGR-PISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       153 PE~~~-~~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      ||+.. .++.          +|+|++|+.||.+...
T Consensus       182 PE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~  217 (270)
T d1t4ha_         182 PEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQN  217 (270)
T ss_dssp             GGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS
T ss_pred             HHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCccc
Confidence            99833 3333          7999999999976543

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-39  Score=255.03  Aligned_cols=165  Identities=16%  Similarity=0.175  Sum_probs=138.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++....   .....+.+.+|+.+|+.++||||+++++++.+..    .+|+||||+++|+|.+++... 
T Consensus        26 ~~~~~~~vAiK~i~~~~---~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~----~~~ivmEy~~gg~L~~~l~~~-   97 (271)
T d1nvra_          26 NRVTEEAVAVKIVDMKR---AVDCPENIKKEICINKMLNHENVVKFYGHRREGN----IQYLFLEYCSGGELFDRIEPD-   97 (271)
T ss_dssp             ETTTCCEEEEEEEECC----------CHHHHHHHHHTCCCTTBCCEEEEEEETT----EEEEEEECCTTEEGGGGSBTT-
T ss_pred             ECCCCCEEEEEEEehhh---cchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCc----eeEEEEeccCCCcHHHHHhcC-
Confidence            56789999999997532   2334467899999999999999999999998754    699999999999999998654 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                         ..+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..          ....||+.|+
T Consensus        98 ---~~l~e~~~~~i~~qi~~al~ylH~--~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~  172 (271)
T d1nvra_          98 ---IGMPEPDAQRFFHQLMAGVVYLHG--IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYV  172 (271)
T ss_dssp             ---TBCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGS
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--cCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCcc
Confidence               349999999999999999999999  7799999999999999999999999999864          3567999999


Q ss_pred             cccc--CCCCch-----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTY--GRPISG-----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~--~~~~~~-----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+  +.++..           +|+|++|..||.......
T Consensus       173 APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~  213 (271)
T d1nvra_         173 APELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC  213 (271)
T ss_dssp             CTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTS
T ss_pred             CHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHH
Confidence            9997  344332           699999999998765543

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=251.27  Aligned_cols=167  Identities=20%  Similarity=0.301  Sum_probs=141.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++...... .......+.+|+.+++.++||||+++++++.+.+    .+|+||||+++|+|.+++....
T Consensus        27 ~~~~~~~vAiK~i~~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~----~~~ivmEy~~~g~L~~~l~~~~  101 (263)
T d2j4za1          27 EKQSKFILALKVLFKAQLE-KAGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT----RVYLILEYAPLGTVYRELQKLS  101 (263)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEEECCTTCBHHHHHHHHS
T ss_pred             ECCCCcEEEEEEEchHHcc-ChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECC----EEEEEEeecCCCcHHHHHhhcC
Confidence            5678999999999743211 1234567889999999999999999999998754    6999999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                          .+++..+..++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..      ....||+.|+|||+
T Consensus       102 ----~l~e~~~~~i~~qi~~al~~lH~--~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~  175 (263)
T d2j4za1         102 ----KFDEQRTATYITELANALSYCHS--KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEM  175 (263)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCeeeeeeccccceecCCCCEeecccceeeecCCCcccccCCCCcccCHHH
Confidence                49999999999999999999999  7799999999999999999999999999865      45689999999997


Q ss_pred             --CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          156 --GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                        +.+++.          +|+|++|..||.+....+
T Consensus       176 ~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~  211 (263)
T d2j4za1         176 IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE  211 (263)
T ss_dssp             HTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             HcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHH
Confidence              334444          799999999998765444

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-38  Score=252.39  Aligned_cols=174  Identities=19%  Similarity=0.267  Sum_probs=136.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..||+.||||++.....  .....+.+.+|+.+|+.++|||||++++++.+..  ...+|+|||||++|+|.+++....
T Consensus        25 ~~~~~~~vAvK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--~~~~~ivmEy~~~g~L~~~i~~~~  100 (269)
T d2java1          25 RKSDGKILVWKELDYGSM--TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT--NTTLYIVMEYCEGGDLASVITKGT  100 (269)
T ss_dssp             ETTTCCEEEEEEECCTTS--CHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC------CEEEEEECCTTEEHHHHHHHHH
T ss_pred             ECCCCCEEEEEEEChhhC--CHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCC--CCEEEEEEecCCCCcHHHHHHhcc
Confidence            567899999999986432  2455678899999999999999999999987632  235899999999999999998765


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCC---CCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCS---PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y  150 (218)
                      .....+++..++.++.||+.||.|||+.+   .+|+||||||+|||++.++.++|+|||++..        ....||+.|
T Consensus       101 ~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y  180 (269)
T d2java1         101 KERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYY  180 (269)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-----------CCCSC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccCCCCccc
Confidence            44567999999999999999999999821   2399999999999999999999999999864        356789999


Q ss_pred             ccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          151 TRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       151 ~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +|||+  +..++.          +|+|+||..||.+....+
T Consensus       181 ~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~  221 (269)
T d2java1         181 MSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE  221 (269)
T ss_dssp             CCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             CCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHH
Confidence            99997  334444          799999999998765543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-38  Score=257.85  Aligned_cols=166  Identities=17%  Similarity=0.216  Sum_probs=140.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||+|++...   ........+.+|+.+|+.++|||||+++++|.+..    ++|+||||++||+|.+++....
T Consensus        27 ~~~~~~~vAiK~i~~~---~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~----~~~iVmEy~~gg~L~~~l~~~~   99 (322)
T d1s9ja_          27 HKPSGLVMARKLIHLE---IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG----EISICMEHMDGGSLDQVLKKAG   99 (322)
T ss_dssp             ETTTTEEEEEEEEECC---CCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSS----EEEEEEECCTTEEHHHHHHHHS
T ss_pred             ECCCCcEEEEEEEChh---hCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----EEEEEEEcCCCCcHHHHHhhcC
Confidence            4678999999999753   22345578899999999999999999999998754    6999999999999999998753


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQTY  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aPE~  155 (218)
                          .+++..++.++.|++.||.|||+. ++|+||||||+|||++.++.++|+|||+|..      .+..||+.|+|||+
T Consensus       100 ----~l~~~~~~~~~~qil~aL~yLH~~-~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEv  174 (322)
T d1s9ja_         100 ----RIPEQILGKVSIAVIKGLTYLREK-HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER  174 (322)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHHH-HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC---CCSSCCCCHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHh-CCEEccccCHHHeeECCCCCEEEeeCCCccccCCCccccccCCccccCchH
Confidence                499999999999999999999972 2699999999999999999999999999875      56789999999997


Q ss_pred             --CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          156 --GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                        +.+++.          +|+|++|+.||.+....+
T Consensus       175 l~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~  210 (322)
T d1s9ja_         175 LQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKE  210 (322)
T ss_dssp             HHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTH
T ss_pred             HcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Confidence              444544          799999999998765443

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-38  Score=252.71  Aligned_cols=162  Identities=19%  Similarity=0.287  Sum_probs=139.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++......    ..+.+.+|+.+|+.++|||||+++++|.+..    .+|+|||||+||+|.+++... 
T Consensus        41 ~~~~~~~vAvK~~~~~~~~----~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~----~~~ivmEy~~gg~L~~~~~~~-  111 (293)
T d1yhwa1          41 DVATGQEVAIRQMNLQQQP----KKELIINEILVMRENKNPNIVNYLDSYLVGD----ELWVVMEYLAGGSLTDVVTET-  111 (293)
T ss_dssp             BTTTCCEEEEEEEEGGGCS----CHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCTTCBHHHHHHHS-
T ss_pred             ECCCCCEEEEEEEecccCh----HHHHHHHHHHHHHhCCCCCEeeEeEEEEECC----EEEEEEEecCCCcHHHHhhcc-
Confidence            5788999999999854322    2457899999999999999999999998754    699999999999999987652 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .+++..++.++.||+.||.|||+  +||+||||||+|||++.++.++|+|||++..        ....||+.|+||
T Consensus       112 ----~l~~~~~~~i~~qi~~aL~yLH~--~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aP  185 (293)
T d1yhwa1         112 ----CMDEGQIAAVCRECLQALEFLHS--NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP  185 (293)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHH--CCCcccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCCccCh
Confidence                49999999999999999999999  7799999999999999999999999999864        455799999999


Q ss_pred             cc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          154 TY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+  +.+++.          +|+|++|..||.+....
T Consensus       186 E~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~  222 (293)
T d1yhwa1         186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL  222 (293)
T ss_dssp             HHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             hhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHH
Confidence            97  334443          79999999999765543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-38  Score=250.82  Aligned_cols=166  Identities=19%  Similarity=0.218  Sum_probs=141.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++....    ....+.+.+|+.+|+.++|||||++++++.+.+    .+|+|||||++|+|.+++....
T Consensus        33 ~~~~~~~vAvK~i~~~~----~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----~~~lvmEy~~~g~L~~~~~~~~  104 (288)
T d2jfla1          33 NKETSVLAAAKVIDTKS----EEELEDYMVEIDILASCDHPNIVKLLDAFYYEN----NLWILIEFCAGGAVDAVMLELE  104 (288)
T ss_dssp             ETTTCCEEEEEEEECSS----SGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETT----EEEEEEECCTTEEHHHHHHHHT
T ss_pred             ECCCCeEEEEEEECcCC----HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC----eEEEEEecCCCCcHHHHHHhcC
Confidence            56789999999997432    233457889999999999999999999998754    6999999999999999987643


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         .++++..+..++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..        ....||+.|+||
T Consensus       105 ---~~l~e~~~~~i~~qi~~gL~ylH~--~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~AP  179 (288)
T d2jfla1         105 ---RPLTESQIQVVCKQTLDALNYLHD--NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAP  179 (288)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCEEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccccccCCH
Confidence               459999999999999999999999  7799999999999999999999999999854        467899999999


Q ss_pred             ccCC-------CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          154 TYGR-------PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       154 E~~~-------~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      |+..       +++.          +|+|++|..||.+....+.
T Consensus       180 E~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~  223 (288)
T d2jfla1         180 EVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRV  223 (288)
T ss_dssp             HHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH
T ss_pred             HHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHH
Confidence            9731       2222          7999999999987665543

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=249.78  Aligned_cols=167  Identities=16%  Similarity=0.218  Sum_probs=140.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++...... .......+.+|+.+|+.++||||++++++|.+..    .+|+||||++||+|.+++....
T Consensus        29 ~~~~~~~vAvK~i~~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----~~~ivmEy~~gg~L~~~~~~~~  103 (288)
T d1uu3a_          29 ELATSREYAIKILEKRHII-KENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE----KLYFGLSYAKNGELLKYIRKIG  103 (288)
T ss_dssp             ETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSS----EEEEEECCCTTEEHHHHHHHHS
T ss_pred             ECCCCCEEEEEEEehHHcc-CHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECC----EEEEEEEccCCCCHHHhhhccC
Confidence            4678999999999743211 1223467899999999999999999999998754    6999999999999999988764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~  151 (218)
                          .+++..++.++.|++.||.|||+  .+|+||||||+|||++.++.++|+|||++..          ....||+.|+
T Consensus       104 ----~l~e~~~~~~~~qi~~al~ylH~--~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~  177 (288)
T d1uu3a_         104 ----SFDETCTRFYTAEIVSALEYLHG--KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYV  177 (288)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGC
T ss_pred             ----CCCHHHHHHHHHHHHHHHHhhcc--ccEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCcccc
Confidence                49999999999999999999999  7799999999999999999999999999864          3457999999


Q ss_pred             cccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+  +..++.          +|+|++|..||.+....+
T Consensus       178 APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~  217 (288)
T d1uu3a_         178 SPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYL  217 (288)
T ss_dssp             CHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             CceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHH
Confidence            9997  444444          799999999998765443

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=253.22  Aligned_cols=167  Identities=16%  Similarity=0.210  Sum_probs=142.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..||+.||||++....... ......+.+|+.+|+.++||||++++++|.+..    .+|+||||++||+|.+++....
T Consensus        26 ~~~~~~~~AiK~i~k~~~~~-~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~----~~~iv~ey~~gg~L~~~~~~~~  100 (337)
T d1o6la_          26 EKATGRYYAMKILRKEVIIA-KDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD----RLCFVMEYANGGELFFHLSRER  100 (337)
T ss_dssp             ETTTCCEEEEEEEEHHHHHH-TTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS----EEEEEEECCTTCBHHHHHHHHS
T ss_pred             ECCCCCEEEEEEEchhhccC-HHHHHHHHHHHHHHHhCCCCCEEEEEeeecccc----ccccceeccCCCchhhhhhccc
Confidence            56799999999998432111 223567889999999999999999999998754    6999999999999999998764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                          .+++..++.++.||+.||.|||+  ++|+||||||+|||++.+|.++|+|||++..        ...+||+.|+||
T Consensus       101 ----~~~e~~~~~~~~qil~al~ylH~--~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aP  174 (337)
T d1o6la_         101 ----VFTEERARFYGAEIVSALEYLHS--RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP  174 (337)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCG
T ss_pred             ----CCcHHHHHHHHHHHhhhhhhhhh--cCccccccCHHHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhh
Confidence                49999999999999999999999  7799999999999999999999999999865        346789999999


Q ss_pred             cc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+  +.+++.          +|+|++|..||.+....+
T Consensus       175 E~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~  212 (337)
T d1o6la_         175 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER  212 (337)
T ss_dssp             GGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             hhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHH
Confidence            98  334443          799999999998876543

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-37  Score=249.92  Aligned_cols=166  Identities=18%  Similarity=0.223  Sum_probs=140.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++..... ......+.+.+|+.+|+.++|||||++++++.+..    .+|+|||||.+|+|..++... 
T Consensus        36 ~~~~~~~vAvK~i~~~~~-~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~----~~~iv~E~~~~g~l~~~~~~~-  109 (309)
T d1u5ra_          36 DVRNSEVVAIKKMSYSGK-QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH----TAWLVMEYCLGSASDLLEVHK-  109 (309)
T ss_dssp             ETTTTEEEEEEEEECCSS-CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT----EEEEEEECCSEEHHHHHHHHT-
T ss_pred             ECCCCcEEEEEEEchhhc-cCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECC----EEEEEEEecCCCchHHHHHhC-
Confidence            567899999999985432 22455677899999999999999999999998754    699999999988887766654 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----ccCCCcccccccccCC
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----IENKKYLSATRQTYGR  157 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----~~~~~t~~y~aPE~~~  157 (218)
                         .++++..++.++.||+.||.|||+  +||+||||||+|||++.++.++|+|||++..    ....||+.|+|||+..
T Consensus       110 ---~~l~e~~~~~i~~qi~~aL~yLH~--~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE~~~  184 (309)
T d1u5ra_         110 ---KPLQEVEIAAVTHGALQGLAYLHS--HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVIL  184 (309)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHT
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--CCEeccCCCcceEEECCCCCEEEeecccccccCCCCccccCccccCHHHHh
Confidence               459999999999999999999999  7799999999999999999999999999875    5678999999999732


Q ss_pred             -----CCch----------hhhhhhCCCCCCcchhh
Q psy238          158 -----PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       158 -----~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                           .++.          +|+|++|..||.+....
T Consensus       185 ~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~  220 (309)
T d1u5ra_         185 AMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM  220 (309)
T ss_dssp             TTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             ccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHH
Confidence                 2333          79999999999765443

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-37  Score=248.44  Aligned_cols=167  Identities=20%  Similarity=0.287  Sum_probs=142.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++..... ......+.+.+|+.+|+.++||||+++++++.+..    .+|+||||++|++|..++....
T Consensus        25 ~~~~g~~vAvK~i~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~----~~~ivmE~~~gg~l~~~~~~~~   99 (316)
T d1fota_          25 SRHNGRYYAMKVLKKEIV-VRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ----QIFMIMDYIEGGELFSLLRKSQ   99 (316)
T ss_dssp             ETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHHTS
T ss_pred             ECCCCCEEEEEEEchHHc-cCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCC----eeeeEeeecCCccccccccccc
Confidence            467899999999974321 11223567889999999999999999999998754    6999999999999999998764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCccccccccc-
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTY-  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~-  155 (218)
                          .+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..     ....||+.|+|||+ 
T Consensus       100 ----~~~~~~~~~~~~qi~~al~~lH~--~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l  173 (316)
T d1fota_         100 ----RFPNPVAKFYAAEVCLALEYLHS--KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVV  173 (316)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHT--TTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHH
T ss_pred             ----cccccHHHHHHHHHHHhhhhhcc--CcEEccccCchheeEcCCCCEEEecCccceEeccccccccCcccccCHHHH
Confidence                48999999999999999999999  7799999999999999999999999999876     56789999999997 


Q ss_pred             -CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          156 -GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 -~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                       +.+++.          +|+|++|+.||.+....+
T Consensus       174 ~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~  208 (316)
T d1fota_         174 STKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK  208 (316)
T ss_dssp             TTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             cCCCCCchhhccccchhHHHHHhCCCCCCCcCHHH
Confidence             334444          799999999998765443

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.6e-37  Score=247.69  Aligned_cols=165  Identities=17%  Similarity=0.217  Sum_probs=127.2

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++.....   ......+.+|+.+|+.++|||||++++++.+.+    .+|+|||||+||+|.+++... 
T Consensus        30 ~~~~~~~vAvK~i~~~~~---~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~----~~~lvmE~~~gg~L~~~l~~~-  101 (307)
T d1a06a_          30 DKRTQKLVAIKCIAKKAL---EGKEGSMENEIAVLHKIKHPNIVALDDIYESGG----HLYLIMQLVSGGELFDRIVEK-  101 (307)
T ss_dssp             ETTTCCEEEEEEEEC-------------CHHHHHHHTCCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHTC-
T ss_pred             ECCCCCEEEEEEEchHHh---hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----EEEEEEeccCCCcHHHhhhcc-
Confidence            467899999999985322   233456789999999999999999999997754    699999999999999999764 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe---cCCcEEEeecCcccc-------ccCCCccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ---HNGLVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~---~~~~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                         ..+++..+..++.||+.||.|||+  ++|+||||||+|||+.   .++.++|+|||++..       .+..||+.|+
T Consensus       102 ---~~l~e~~~~~~~~qi~~al~ylH~--~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~  176 (307)
T d1a06a_         102 ---GFYTERDASRLIFQVLDAVKYLHD--LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYV  176 (307)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEESSSSTTCCEEECCC------------------CTTS
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHhhhh--ceeeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCcccc
Confidence               359999999999999999999999  7799999999999995   478999999999864       4567999999


Q ss_pred             cccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||+  +.+++.          +|+|++|..||.+....+
T Consensus       177 APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~  216 (307)
T d1a06a_         177 APEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAK  216 (307)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             CcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHH
Confidence            9997  334444          799999999998765443

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=242.54  Aligned_cols=162  Identities=21%  Similarity=0.249  Sum_probs=135.2

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||||++.....  .....+.+.+|+.+|+.++|||||++++++...     .+++||||+++|+|.+++....   .
T Consensus        30 ~~~vAvK~~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~-----~~~lv~Ey~~~g~L~~~l~~~~---~   99 (276)
T d1uwha_          30 HGDVAVKMLNVTAP--TPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP-----QLAIVTQWCEGSSLYHHLHIIE---T   99 (276)
T ss_dssp             SSEEEEEECCCSSC--CTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-----SCEEEEECCCEEEHHHHHHTSC---C
T ss_pred             CCEEEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCEeeeeEEEecc-----EEEEEEecCCCCCHHHHHhhcc---C
Confidence            34699999975422  234567889999999999999999999987543     4899999999999999997643   3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY  155 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~  155 (218)
                      .+++..+..++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..          ....||+.|+|||+
T Consensus       100 ~~~~~~~~~i~~qi~~gl~yLH~--~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~  177 (276)
T d1uwha_         100 KFEMIKLIDIARQTAQGMDYLHA--KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV  177 (276)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhc--CCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHH
Confidence            59999999999999999999999  7799999999999999999999999999854          34578999999997


Q ss_pred             CC-----CCch----------hhhhhhCCCCCCcchhhh
Q psy238          156 GR-----PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 ~~-----~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ..     +++.          +|||+||+.||.+.....
T Consensus       178 l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~  216 (276)
T d1uwha_         178 IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD  216 (276)
T ss_dssp             HTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH
T ss_pred             HhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHH
Confidence            32     2333          799999999998765443

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=3.5e-36  Score=247.79  Aligned_cols=165  Identities=16%  Similarity=0.283  Sum_probs=140.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|..||||++...    .....+.+.+|+.+|+.++|||||+++++|.+.+    .+|+|||||+||+|.+++....
T Consensus        47 ~~~~g~~vAvK~i~~~----~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~----~~~ivmE~~~gg~L~~~l~~~~  118 (350)
T d1koaa2          47 ERATGNNFAAKFVMTP----HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN----EMVMIYEFMSGGELFEKVADEH  118 (350)
T ss_dssp             ETTTTEEEEEEEECCC----SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETT----EEEEEECCCCSCBHHHHHTCTT
T ss_pred             ECCCCCEEEEEEEccc----chhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----EEEEEEEcCCCCCHHHHHHhhc
Confidence            4678999999999742    2445678899999999999999999999998754    6999999999999999996542


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec--CCcEEEeecCcccc-------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH--NGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~--~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                         ..+++..++.++.||+.||.|||+  ++|+||||||+|||++.  ++.++|+|||++..       ....||+.|+|
T Consensus       119 ---~~l~e~~~~~i~~qi~~aL~ylH~--~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~a  193 (350)
T d1koaa2         119 ---NKMSEDEAVEYMRQVCKGLCHMHE--NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAA  193 (350)
T ss_dssp             ---SCBCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHh--cCCeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccC
Confidence               459999999999999999999999  77999999999999964  58899999999875       34688999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+  +.+++.          +|+|++|..||.+....+
T Consensus       194 PEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~  232 (350)
T d1koaa2         194 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE  232 (350)
T ss_dssp             HHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             HHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHH
Confidence            997  444444          799999999998765544

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-36  Score=241.62  Aligned_cols=164  Identities=14%  Similarity=0.170  Sum_probs=134.9

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR   82 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~   82 (218)
                      ..+++.||||++...  .......+.+.+|+.+|+.++|||||+++++|...     .+++||||+++|+|.+++...  
T Consensus        31 ~~~~~~vAvK~~~~~--~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-----~~~lvmE~~~~g~L~~~l~~~--  101 (277)
T d1xbba_          31 KKVVKTVAVKILKNE--ANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-----SWMLVMEMAELGPLNKYLQQN--  101 (277)
T ss_dssp             SSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-----SEEEEEECCTTEEHHHHHHHC--
T ss_pred             CCcCeEEEEEEEChh--hCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-----CEEEEEEcCCCCcHHHHHhhc--
Confidence            456788999999743  22245567899999999999999999999998653     378999999999999999865  


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccc
Q psy238           83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSAT  151 (218)
Q Consensus        83 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~  151 (218)
                        ..+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..           ....||+.|+
T Consensus       102 --~~l~~~~~~~i~~qi~~gl~ylH~--~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~  177 (277)
T d1xbba_         102 --RHVKDKNIIELVHQVSMGMKYLEE--SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY  177 (277)
T ss_dssp             --TTCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGC
T ss_pred             --cCCCHHHHHHHHHHHHHHHhhHHh--CCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceec
Confidence              349999999999999999999999  7799999999999999999999999999864           2356889999


Q ss_pred             cccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          152 RQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      |||+  +..++.          +|||+| |..||.+....+
T Consensus       178 APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~  218 (277)
T d1xbba_         178 APECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE  218 (277)
T ss_dssp             CHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH
T ss_pred             CchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHH
Confidence            9996  333333          799998 899998766544

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=5.7e-36  Score=246.66  Aligned_cols=165  Identities=15%  Similarity=0.237  Sum_probs=140.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++...    .......+.+|+.+|+.++|||||+++++|.+..    .+|+|||||+||+|.+++....
T Consensus        50 ~~~~~~~vAiK~i~~~----~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~----~~~ivmE~~~gg~L~~~~~~~~  121 (352)
T d1koba_          50 EKATGRVFVAKFINTP----YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY----EMVLILEFLSGGELFDRIAAED  121 (352)
T ss_dssp             ETTTCCEEEEEEEECC----SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS----EEEEEEECCCCCBHHHHTTCTT
T ss_pred             ECCCCCEEEEEEECCc----chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----EEEEEEEcCCCChHHHHHHhcC
Confidence            5678999999999742    2344567889999999999999999999998654    6999999999999998876543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe--cCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ--HNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~--~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                         .++++..++.++.||+.||.|||+  .||+||||||+|||++  .++.++|+|||++..       ....||+.|+|
T Consensus       122 ---~~l~e~~~~~i~~qi~~aL~ylH~--~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~a  196 (352)
T d1koba_         122 ---YKMSEAEVINYMRQACEGLKHMHE--HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAA  196 (352)
T ss_dssp             ---CCBCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--CCeeecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccC
Confidence               359999999999999999999999  7799999999999997  568999999999875       44688999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+  +.+++.          +|+|++|..||.+....+
T Consensus       197 PE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~  235 (352)
T d1koba_         197 PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE  235 (352)
T ss_dssp             HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH
T ss_pred             HHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            997  334443          799999999998766544

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-36  Score=240.91  Aligned_cols=163  Identities=18%  Similarity=0.274  Sum_probs=136.4

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..||||++...   ......+.+.+|+.+|+.++|||||++++++.+.     .+|+||||+++|+|.+++....  
T Consensus        34 ~~~~~vAvK~l~~~---~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~-----~~~lvmE~~~~g~L~~~l~~~~--  103 (285)
T d1u59a_          34 KKQIDVAIKVLKQG---TEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE-----ALMLVMEMAGGGPLHKFLVGKR--  103 (285)
T ss_dssp             -CCEEEEEEEECSS---CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS-----SEEEEEECCTTEEHHHHHTTCT--
T ss_pred             CCcEEEEEEEEChh---cCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccC-----eEEEEEEeCCCCcHHHHhhccc--
Confidence            35668999999742   2345667899999999999999999999998653     3899999999999999986543  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSATR  152 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~a  152 (218)
                       ..+++..+..++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..           ....||+.|+|
T Consensus       104 -~~l~~~~~~~i~~qi~~gL~ylH~--~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~a  180 (285)
T d1u59a_         104 -EEIPVSNVAELLHQVSMGMKYLEE--KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYA  180 (285)
T ss_dssp             -TTSCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCC
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHh--CCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccC
Confidence             459999999999999999999999  7799999999999999999999999999864           24567899999


Q ss_pred             ccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ||+  +..++.          +|||+| |..||.+....+
T Consensus       181 PE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~  220 (285)
T d1u59a_         181 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE  220 (285)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH
T ss_pred             hHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHH
Confidence            997  233333          699998 999998765543

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.6e-36  Score=238.85  Aligned_cols=171  Identities=16%  Similarity=0.142  Sum_probs=140.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++.... .........+.+|+.+|+.++||||+++++++...+.....+|+||||++|++|.+++....
T Consensus        28 ~~~~~~~vAiK~i~~~~-~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~~  106 (277)
T d1o6ya_          28 DLRLHRDVAVKVLRADL-ARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEG  106 (277)
T ss_dssp             ETTTTEEEEEEEECSTT-TTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHHC
T ss_pred             ECCCCCEEEEEEEchhh-ccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhcccC
Confidence            56789999999997532 22355667899999999999999999999999876655567899999999999999988763


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSA  150 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y  150 (218)
                          ++++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||.+..           ....||+.|
T Consensus       107 ----~l~~~~~~~i~~qi~~al~~lH~--~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y  180 (277)
T d1o6ya_         107 ----PMTPKRAIEVIADACQALNFSHQ--NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQY  180 (277)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TT
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCccCccccCcccccCccccceeehhhhhhhhccccccccccccccCcccc
Confidence                49999999999999999999999  7799999999999999999999999997653           445789999


Q ss_pred             ccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          151 TRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       151 ~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      +|||+  +.+++.          +|+|+||..||.+....+
T Consensus       181 ~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~  221 (277)
T d1o6ya_         181 LSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS  221 (277)
T ss_dssp             CCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             cCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHH
Confidence            99997  334444          799999999998765443

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-36  Score=246.38  Aligned_cols=167  Identities=16%  Similarity=0.219  Sum_probs=141.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++..... ......+.+.+|+.+|+.++|||||++++++.+..    .+++||+|+.+|+|..++....
T Consensus        62 ~~~~g~~~AvK~i~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~----~~~~v~e~~~~g~l~~~l~~~~  136 (350)
T d1rdqe_          62 HKESGNHYAMKILDKQKV-VKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS----NLYMVMEYVAGGEMFSHLRRIG  136 (350)
T ss_dssp             ETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEEECCTTCBHHHHHHHHC
T ss_pred             ECCCCCEEEEEEEchHHc-cCHHHHHHHHHHHHHHHHcCCCcEeeccccccccc----ccccccccccccchhhhHhhcC
Confidence            567899999999974311 11233467889999999999999999999998754    5899999999999999998764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCccccccccc-
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTY-  155 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~-  155 (218)
                          .+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..     ....||+.|+|||+ 
T Consensus       137 ----~l~e~~~~~i~~qi~~aL~yLH~--~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~  210 (350)
T d1rdqe_         137 ----RFSEPHARFYAAQIVLTFEYLHS--LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEII  210 (350)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHh--CCEecCcCCHHHcccCCCCCEEeeeceeeeecccccccccCccccCCHHHH
Confidence                49999999999999999999999  7799999999999999999999999999875     45779999999997 


Q ss_pred             -CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          156 -GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 -~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                       +.+++.          +|+|++|..||.+....+
T Consensus       211 ~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~  245 (350)
T d1rdqe_         211 LSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ  245 (350)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             cCCCCCccccccchhHHHHHHHhCCCCCCCcCHHH
Confidence             434444          799999999998765433

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=237.32  Aligned_cols=169  Identities=21%  Similarity=0.302  Sum_probs=141.4

Q ss_pred             CCCCCcEEEEEEeecccccc--cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKN--FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~--~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|+.||||++.......  .....+.+.+|+.+|+.++|||||+++++|.+..    .+|+|||||++|+|.+++..
T Consensus        31 ~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~----~~~iv~E~~~gg~L~~~i~~  106 (293)
T d1jksa_          31 EKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT----DVILILELVAGGELFDFLAE  106 (293)
T ss_dssp             ETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS----EEEEEEECCCSCBHHHHHHH
T ss_pred             ECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----EEEEEEEcCCCccccchhcc
Confidence            46789999999997543221  1223567899999999999999999999998754    69999999999999999987


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC----cEEEeecCcccc-------ccCCCcc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG----LVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~----~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      ..    .+++..++.++.|++.||.|||+  .+|+||||||+|||++.++    .++|+|||++..       ....+|+
T Consensus       107 ~~----~l~~~~~~~~~~qi~~al~yLH~--~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~  180 (293)
T d1jksa_         107 KE----SLTEEEATEFLKQILNGVYYLHS--LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTP  180 (293)
T ss_dssp             HS----SCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCG
T ss_pred             cc----ccchhHHHHHHHHHHHHHHhhhh--cceeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCC
Confidence            63    49999999999999999999999  7799999999999998775    599999999865       4568899


Q ss_pred             ccccccc--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          149 SATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       149 ~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      .|+|||+  +..++.          +|+|++|..||.+....+.
T Consensus       181 ~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~  224 (293)
T d1jksa_         181 EFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET  224 (293)
T ss_dssp             GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             cccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHH
Confidence            9999997  333433          7999999999987655443

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-36  Score=240.02  Aligned_cols=161  Identities=21%  Similarity=0.242  Sum_probs=134.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..+|+.||||++....     ...+.+.+|+.+|+.++|||||+++++|.+.+    .+++||||+++|+|.+++....
T Consensus        38 ~~~~~~~vAvK~i~~~~-----~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~----~~~iv~E~~~~g~l~~~l~~~~  108 (287)
T d1opja_          38 WKKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP----PFYIITEFMTYGNLLDYLRECN  108 (287)
T ss_dssp             EGGGTEEEEEEECCTTC-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHSC
T ss_pred             ECCCCeEEEEEEECCcc-----chHHHHHHHHHHHHhCCCCCEecCCccEeeCC----eeEEEeecccCcchHHHhhhcc
Confidence            35678999999987431     12356899999999999999999999997654    5899999999999999997653


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                      .  ..+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..         ....|++.|+|
T Consensus       109 ~--~~~~~~~~~~i~~qi~~gL~yLH~--~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~a  184 (287)
T d1opja_         109 R--QEVSAVVLLYMATQISSAMEYLEK--KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA  184 (287)
T ss_dssp             T--TTSCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCC
T ss_pred             c--cchHHHHHHHHHHHHHHHHHHHHH--CCcccCccccCeEEECCCCcEEEccccceeecCCCCceeeccccccccccC
Confidence            3  568999999999999999999999  7799999999999999999999999999875         22346889999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcc
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~  175 (218)
                      ||+  +..++.          +|+|++|..|+...
T Consensus       185 PE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~  219 (287)
T d1opja_         185 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG  219 (287)
T ss_dssp             HHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             hHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCc
Confidence            997  344444          79999987776543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-35  Score=242.56  Aligned_cols=168  Identities=12%  Similarity=0.155  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEEEeeccccc--ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERK--NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~--~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      +..+|+.||||++......  ...........++.+++.++|||||+++++|.+.+    .+|+||||++||+|.+++..
T Consensus        25 ~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~----~~~ivmE~~~gg~L~~~l~~  100 (364)
T d1omwa3          25 KADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD----KLSFILDLMNGGDLHYHLSQ  100 (364)
T ss_dssp             ETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS----EEEEEECCCCSCBHHHHHHH
T ss_pred             ECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECC----EEEEEEEecCCCcHHHHHHh
Confidence            5678999999999743211  11122223344577888889999999999998754    69999999999999999987


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------ccCCCccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------IENKKYLSATRQ  153 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------~~~~~t~~y~aP  153 (218)
                      ..    .+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..      ....||+.|+||
T Consensus       101 ~~----~~~e~~~~~~~~qi~~aL~ylH~--~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~~~~~GT~~y~AP  174 (364)
T d1omwa3         101 HG----VFSEADMRFYAAEIILGLEHMHN--RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP  174 (364)
T ss_dssp             HC----SCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSCCCSCCSCGGGCCH
T ss_pred             cc----cccHHHHHHHHHHHHHHHHHHHH--CCccceeeccceeEEcCCCcEEEeeeceeeecCCCcccccccccccchh
Confidence            63    48999999999999999999999  7799999999999999999999999999875      456899999999


Q ss_pred             ccC---CCCch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TYG---RPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~~---~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+.   ..++.          +|+|+||..||.+.....
T Consensus       175 E~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~  213 (364)
T d1omwa3         175 EVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD  213 (364)
T ss_dssp             HHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSC
T ss_pred             HHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHH
Confidence            972   23333          799999999998765433

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-35  Score=237.24  Aligned_cols=161  Identities=18%  Similarity=0.278  Sum_probs=129.4

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||.+..   .......+.+.+|+.+|+.++|||||++++++...+    .+++|||||++|+|.+++....   ..
T Consensus        55 ~~vavK~~~~---~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~----~~~iv~Ey~~~g~L~~~~~~~~---~~  124 (299)
T d1jpaa_          55 IFVAIKTLKS---GYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKST----PVMIITEFMENGSLDSFLRQND---GQ  124 (299)
T ss_dssp             EEEEEEECCS---SCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----SCEEEEECCTTEEHHHHHHTTT---TC
T ss_pred             EEEEEEEECc---ccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC----EEEEEEEecCCCcceeeecccc---CC
Confidence            3689998864   223456678999999999999999999999997654    4899999999999999988643   35


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------------ccCCCccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------------IENKKYLSATRQ  153 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------------~~~~~t~~y~aP  153 (218)
                      +++..+..++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..             ....+|+.|+||
T Consensus       125 l~~~~~~~i~~qia~gl~yLH~--~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aP  202 (299)
T d1jpaa_         125 FTVIQLVGMLRGIAAGMKYLAD--MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAP  202 (299)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhh--CCCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCH
Confidence            9999999999999999999999  7799999999999999999999999999864             124568899999


Q ss_pred             cc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          154 TY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       154 E~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      |+  +..++.          +|||+| |..||.+....+
T Consensus       203 E~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~  241 (299)
T d1jpaa_         203 EAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQD  241 (299)
T ss_dssp             HHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             HHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHH
Confidence            97  334443          699998 899998766544

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=5.5e-35  Score=233.48  Aligned_cols=169  Identities=14%  Similarity=0.189  Sum_probs=141.8

Q ss_pred             CCCCCcEEEEEEeecccccc-----cHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKN-----FKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ   75 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~-----~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~   75 (218)
                      |..+|+.||||++.......     .......+.+|+.+|+.+. ||||+++++++.+.+    ++|+||||+++|+|.+
T Consensus        24 ~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~----~~~ivmE~~~~g~L~~   99 (277)
T d1phka_          24 HKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNT----FFFLVFDLMKKGELFD   99 (277)
T ss_dssp             ETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS----EEEEEEECCTTCBHHH
T ss_pred             ECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCc----ceEEEEEcCCCchHHH
Confidence            46789999999998643221     1334567889999999996 999999999998754    6999999999999999


Q ss_pred             HHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcc
Q psy238           76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYL  148 (218)
Q Consensus        76 ~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~  148 (218)
                      ++....    ++++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..       ....||+
T Consensus       100 ~l~~~~----~l~e~~~~~~~~qi~~al~~lH~--~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~  173 (277)
T d1phka_         100 YLTEKV----TLSEKETRKIMRALLEVICALHK--LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTP  173 (277)
T ss_dssp             HHHHHS----SCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCG
T ss_pred             HHHhcC----CCCHHHHHHHHHHHHHHHHHHHH--cCCcccccccceEEEcCCCCeEEccchheeEccCCCceeeeeccC
Confidence            998653    49999999999999999999999  7799999999999999999999999999865       4467899


Q ss_pred             cccccccCC--------CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          149 SATRQTYGR--------PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       149 ~y~aPE~~~--------~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      .|+|||+..        .++.          +|+|++|..||.+...+..
T Consensus       174 ~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~  223 (277)
T d1phka_         174 SYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLM  223 (277)
T ss_dssp             GGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             CCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHH
Confidence            999999722        1111          7999999999988765443

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-35  Score=236.44  Aligned_cols=167  Identities=17%  Similarity=0.234  Sum_probs=138.3

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhh-cCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLT-QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~-~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|+.||||++...... .......+..|+.++. .++||||+++++++.+.+    .+|+||||+++|+|.+++...
T Consensus        23 ~~~t~~~vAvK~i~k~~~~-~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~----~~yivmEy~~~g~L~~~i~~~   97 (320)
T d1xjda_          23 FKKTNQFFAIKALKKDVVL-MDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE----NLFFVMEYLNGGDLMYHIQSC   97 (320)
T ss_dssp             ETTTTEEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS----EEEEEEECCTTCBHHHHHHHH
T ss_pred             ECCCCCEEEEEEEchhhcc-ChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCC----ceeEEEeecCCCcHHHHhhcc
Confidence            5678999999999743111 1223345666777665 689999999999998754    699999999999999999876


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                      .    .+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        98 ~----~~~e~~~~~~~~qi~~al~ylH~--~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~a  171 (320)
T d1xjda_          98 H----KFDLSRATFYAAEIILGLQFLHS--KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIA  171 (320)
T ss_dssp             S----SCCHHHHHHHHHHHHHHHHHHHH--TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCC
T ss_pred             C----CCCHHHHHHHHHHHHHHHHHHHh--CCeeeccCcccceeecCCCceeccccchhhhcccccccccccCCCCCcCC
Confidence            4    49999999999999999999999  7799999999999999999999999999864        45688999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+  +.+++.          +|+|++|..||.+....+
T Consensus       172 PE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~  210 (320)
T d1xjda_         172 PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE  210 (320)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             HHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHH
Confidence            997  334433          799999999998766544

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-35  Score=231.51  Aligned_cols=159  Identities=16%  Similarity=0.269  Sum_probs=126.7

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||++....     ...+.+.+|+.++..++||||++++++|...+    .+++||||+++|+|.+++....   
T Consensus        28 ~~~~vAvK~i~~~~-----~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~----~~~lv~E~~~~g~L~~~l~~~~---   95 (263)
T d1sm2a_          28 NKDKVAIKTIREGA-----MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA----PICLVFEFMEHGCLSDYLRTQR---   95 (263)
T ss_dssp             TTEEEEEEECCSSS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHTTT---
T ss_pred             CCCEEEEEEECCCc-----CcHHHHHHHHHHHHhcCCCCcccccceeccCC----ceEEEEEecCCCcHHHHhhccc---
Confidence            57789999987431     12356899999999999999999999997754    4899999999999999987653   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..         ....||+.|+|||+
T Consensus        96 ~~~~~~~~~~i~~qia~gl~~lH~--~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~  173 (263)
T d1sm2a_          96 GLFAAETLLGMCLDVCEGMAYLEE--ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEV  173 (263)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHH--TTCCCTTCSGGGEEECGGGCEEECSCC------------------CTTSCCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhhc--cceeecccchhheeecCCCCeEecccchheeccCCCceeecceecCcccCChHH
Confidence            458999999999999999999999  7799999999999999999999999999864         33567899999997


Q ss_pred             --CCCCch----------hhhhhhC-CCCCCcchh
Q psy238          156 --GRPISG----------QYEIVTK-TNNVTEKKK  177 (218)
Q Consensus       156 --~~~~~~----------~~ei~tg-~~p~~~~~~  177 (218)
                        +..++.          +|||+|+ ..||.....
T Consensus       174 l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~  208 (263)
T d1sm2a_         174 FSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN  208 (263)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCH
T ss_pred             hcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCH
Confidence              334444          6999995 555554443

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=241.72  Aligned_cols=162  Identities=12%  Similarity=0.128  Sum_probs=135.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhc-CCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQ-LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~-l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|+.||||++...         ..+.+|+.++.+ .+|||||+++++|.+......++|+|||||+||+|.+++...
T Consensus        33 ~~~~~~~vAiK~i~~~---------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~  103 (335)
T d2ozaa1          33 NKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDR  103 (335)
T ss_dssp             ETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSC
T ss_pred             ECCCCCEEEEEEECCc---------HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhc
Confidence            5678999999998632         246678888655 489999999999976544456799999999999999999864


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec---CCcEEEeecCcccc-------ccCCCcccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH---NGLVKIGCDTYTHT-------IENKKYLSA  150 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~---~~~~ki~dfg~~~~-------~~~~~t~~y  150 (218)
                      ..  ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.   ++.++|+|||++..       ....||+.|
T Consensus       104 ~~--~~l~e~~~~~i~~qi~~al~ylH~--~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y  179 (335)
T d2ozaa1         104 GD--QAFTEREASEIMKSIGEAIQYLHS--INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYY  179 (335)
T ss_dssp             SC--CCEEHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSS
T ss_pred             CC--CCcCHHHHHHHHHHHHHHHHHHHH--cCCccccccccccccccccccccccccccceeeeccCCCccccccCCccc
Confidence            32  469999999999999999999999  77999999999999975   46899999999865       456899999


Q ss_pred             cccccCC--CCch----------hhhhhhCCCCCCcch
Q psy238          151 TRQTYGR--PISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       151 ~aPE~~~--~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +|||+..  .++.          +|+|+||+.||.+..
T Consensus       180 ~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~  217 (335)
T d2ozaa1         180 VAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH  217 (335)
T ss_dssp             CCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETT
T ss_pred             CCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCC
Confidence            9999843  3333          799999999997654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-35  Score=233.73  Aligned_cols=156  Identities=21%  Similarity=0.215  Sum_probs=130.0

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||++....     ...+.+.+|+.+|+.++|||||++++++.+.     .+++||||+++|+|.+++.....  
T Consensus        36 ~~~~vAvK~~~~~~-----~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~-----~~~iv~Ey~~~g~L~~~~~~~~~--  103 (272)
T d1qpca_          36 GHTKVAVKSLKQGS-----MSPDAFLAEANLMKQLQHQRLVRLYAVVTQE-----PIYIITEYMENGSLVDFLKTPSG--  103 (272)
T ss_dssp             TTEEEEEEEECTTS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----SCEEEEECCTTCBHHHHTTSHHH--
T ss_pred             CCCEEEEEEEccCc-----CCHHHHHHHHHHHHhCCCCCEeEEEeeeccC-----CeEEEEEeCCCCcHHHHHhhcCC--
Confidence            57789999997431     1235689999999999999999999988653     37999999999999998876543  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..         ....+|+.|+|||+
T Consensus       104 ~~l~~~~~~~i~~qi~~gl~~lH~--~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~  181 (272)
T d1qpca_         104 IKLTINKLLDMAAQIAEGMAFIEE--RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEA  181 (272)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh--CCcccCccchhheeeecccceeeccccceEEccCCccccccccCCcccccChHH
Confidence            359999999999999999999999  7799999999999999999999999999865         34578899999997


Q ss_pred             C--CCCch----------hhhhhhCCCCCCc
Q psy238          156 G--RPISG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       156 ~--~~~~~----------~~ei~tg~~p~~~  174 (218)
                      .  ..++.          +|||+||..|+..
T Consensus       182 ~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~  212 (272)
T d1qpca_         182 INYGTFTIKSDVWSFGILLTEIVTHGRIPYP  212 (272)
T ss_dssp             HHHCEECHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             HhCCCCCchhhhhhhHHHHHHHHhCCCCCCC
Confidence            2  23333          7999997666543

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=234.83  Aligned_cols=165  Identities=16%  Similarity=0.154  Sum_probs=138.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++...     ......+.+|+.+|..++||||++++++|.+..    ++|+|||||+|++|.+++....
T Consensus        26 ~~~~~~~~AiK~i~~~-----~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~----~~~lvmE~~~gg~L~~~i~~~~   96 (321)
T d1tkia_          26 ETSSKKTYMAKFVKVK-----GTDQVLVKKEISILNIARHRNILHLHESFESME----ELVMIFEFISGLDIFERINTSA   96 (321)
T ss_dssp             ETTTTEEEEEEEECCC-----THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT----EEEEEECCCCCCBHHHHHTSSS
T ss_pred             ECCCCcEEEEEEEcCC-----cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC----EEEEEEecCCCCcHHHHHHhcC
Confidence            5678999999999753     223456789999999999999999999998754    6999999999999999997642


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC--CcEEEeecCcccc-------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN--GLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~--~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                         ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.+  +.++|+|||++..       ....+|+.|+|
T Consensus        97 ---~~l~e~~~~~i~~qi~~al~yLH~--~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~a  171 (321)
T d1tkia_          97 ---FELNEREIVSYVHQVCEALQFLHS--HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYA  171 (321)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHH--cCCCcccccccceeecCCCceEEEEcccchhhccccCCccccccccccccc
Confidence               359999999999999999999999  779999999999999854  5899999999875       34578999999


Q ss_pred             cccC--CCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          153 QTYG--RPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       153 PE~~--~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ||..  ..++.          +|+|++|..||......+.
T Consensus       172 pe~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~  211 (321)
T d1tkia_         172 PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQI  211 (321)
T ss_dssp             HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             chhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHH
Confidence            9972  22222          7999999999987765443

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-35  Score=234.70  Aligned_cols=169  Identities=15%  Similarity=0.194  Sum_probs=133.7

Q ss_pred             CCCCCcEEEEEEeecccccc-cHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKN-FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~-~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|+.||||++....... .......+.+|+.+|+.++|||||++++++.+.+    ++|+||||+.++++..++...
T Consensus        19 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~----~~~ivmE~~~~~~~~~~~~~~   94 (299)
T d1ua2a_          19 DKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS----NISLVFDFMETDLEVIIKDNS   94 (299)
T ss_dssp             CSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT----CCEEEEECCSEEHHHHHTTCC
T ss_pred             ECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCC----ceeehhhhhcchHHhhhhhcc
Confidence            67899999999997542221 1223457889999999999999999999997754    589999999876665554322


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~a  152 (218)
                          ..+++..+..++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..        ....||+.|+|
T Consensus        95 ----~~l~~~~~~~~~~qil~aL~~lH~--~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~a  168 (299)
T d1ua2a_          95 ----LVLTPSHIKAYMLMTLQGLEYLHQ--HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRA  168 (299)
T ss_dssp             ----SSCCSSHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCC
T ss_pred             ----cCCCHHHHHHHHHHHHHHHHHhhc--cceecccCCcceEEecCCCccccccCccccccCCCcccccceecChhhcc
Confidence                458999999999999999999999  7799999999999999999999999999865        34578999999


Q ss_pred             cccC--C-CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          153 QTYG--R-PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       153 PE~~--~-~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ||+.  . .++.          +|+|++|..||.+....+.
T Consensus       169 PE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~  209 (299)
T d1ua2a_         169 PELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQ  209 (299)
T ss_dssp             HHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             HHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHH
Confidence            9972  2 3333          7999999999987665443

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=235.24  Aligned_cols=164  Identities=17%  Similarity=0.228  Sum_probs=132.0

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc---
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR---   82 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---   82 (218)
                      ..||+|.+...   ........+.+|+.+|..+ +|||||++++++.+.+    .+|+|||||++|+|.++|.....   
T Consensus        68 ~~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~----~~~lv~Ey~~~g~L~~~l~~~~~~~~  140 (325)
T d1rjba_          68 IQVAVKMLKEK---ADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG----PIYLIFEYCCYGDLLNYLRSKREKFS  140 (325)
T ss_dssp             EEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHTTTTCC-
T ss_pred             eEEEEEEeccc---cCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC----eEEEEEEcCCCCcHHHHHHhccCCCc
Confidence            46999988742   2234556788999999988 8999999999998754    58999999999999999976532   


Q ss_pred             ----------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----
Q psy238           83 ----------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----  141 (218)
Q Consensus        83 ----------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----  141 (218)
                                      ....+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..     
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~--~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~  218 (325)
T d1rjba_         141 EDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF--KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDS  218 (325)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHHHHHHH--TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCT
T ss_pred             chhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh--CCeeeccCchhccccccCCeEEEeeccccccccCCC
Confidence                            11348999999999999999999999  7799999999999999999999999999864     


Q ss_pred             -----ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          142 -----IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       142 -----~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                           ....||+.|+|||+  +..++.          +|||+| |..||.+....+
T Consensus       219 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~  274 (325)
T d1rjba_         219 NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA  274 (325)
T ss_dssp             TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH
T ss_pred             ceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHH
Confidence                 23456899999996  334444          799998 899998765543

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=230.52  Aligned_cols=167  Identities=20%  Similarity=0.307  Sum_probs=135.0

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++....  ........+.+|+.+|+.++|||||+++++|.+.+    ++|+||||+. +++.+++....
T Consensus        23 ~~~~~~~vAvK~i~~~~--~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~----~~~iv~e~~~-~~~~~~~~~~~   95 (298)
T d1gz8a_          23 NKLTGEVVALKKIRLDT--ETEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN----KLYLVFEFLH-QDLKKFMDASA   95 (298)
T ss_dssp             ETTTCCEEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETT----EEEEEEECCS-EEHHHHHHHTT
T ss_pred             ECCCCCEEEEEEEehhh--cChHHHHHHHHHHHHHHhCCCCcEEEecccccccc----ceeEEEeecC-Cchhhhhhhhc
Confidence            56789999999997532  21234567889999999999999999999998754    6999999996 56666665443


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                      .  ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..        ....||+.|+||
T Consensus        96 ~--~~l~e~~~~~~~~qil~~L~yLH~--~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~ap  171 (298)
T d1gz8a_          96 L--TGIPLPLIKSYLFQLLQGLAFCHS--HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP  171 (298)
T ss_dssp             T--TCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCH
T ss_pred             c--cCCCHHHHHHHHHHHHHHHHHhhc--CCEEccccCchheeecccCcceeccCCcceeccCCcccceeecccceeeeh
Confidence            2  459999999999999999999999  7799999999999999999999999998865        345899999999


Q ss_pred             cc--CCCC-ch----------hhhhhhCCCCCCcchhhh
Q psy238          154 TY--GRPI-SG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       154 E~--~~~~-~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+  .... +.          +|+|++|+.||.+....+
T Consensus       172 E~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~  210 (298)
T d1gz8a_         172 EILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID  210 (298)
T ss_dssp             HHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             hhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHH
Confidence            96  2222 21          799999999998765443

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-34  Score=224.15  Aligned_cols=163  Identities=17%  Similarity=0.298  Sum_probs=137.6

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .++..||||++....     ...+.+.+|+.+++.++||||++++++|.+.+    .+++||||+++|+|..++....  
T Consensus        26 ~~~~~vAvK~l~~~~-----~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~----~~~iv~Ey~~~g~l~~~~~~~~--   94 (258)
T d1k2pa_          26 RGQYDVAIKMIKEGS-----MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR----PIFIITEYMANGCLLNYLREMR--   94 (258)
T ss_dssp             TTTEEEEEEEEESSS-----SCHHHHHHHHHHHHTCCCTTBCCEEEEECCSS----SEEEEEECCTTEEHHHHHHSGG--
T ss_pred             CCCCEEEEEEECcCc-----CCHHHHHHHHHHHHhcCCCceeeEEEEEeeCC----ceEEEEEccCCCcHHHhhhccc--
Confidence            367799999998532     12356899999999999999999999997654    4999999999999999987654  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQT  154 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE  154 (218)
                       ..+++..++.++.|++.||.|||+  .||+||||+|+|||++.++.++|+|||++..         ....+|+.|+|||
T Consensus        95 -~~~~~~~~~~i~~qi~~gl~~LH~--~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE  171 (258)
T d1k2pa_          95 -HRFQTQQLLEMCKDVCEAMEYLES--KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPE  171 (258)
T ss_dssp             -GCCCHHHHHHHHHHHHHHHHHHHH--TTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHH
T ss_pred             -cCCcHHHHHHHHHHHHHHHHHHhh--cCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcH
Confidence             358999999999999999999999  7799999999999999999999999999864         3466789999999


Q ss_pred             c--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          155 Y--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      +  +..++.          +|||+| |+.||.+...++.
T Consensus       172 ~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~  210 (258)
T d1k2pa_         172 VLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSET  210 (258)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHH
T ss_pred             HhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHH
Confidence            7  234443          699998 8999987766544

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-33  Score=224.01  Aligned_cols=157  Identities=18%  Similarity=0.246  Sum_probs=128.0

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||++...   ........+.+|+.+|+.++|||||++++++.+..    .+++||||+.+++|.+++....   ..
T Consensus        37 ~~vAvK~~~~~---~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~----~~~~v~e~~~~~~l~~~~~~~~---~~  106 (283)
T d1mqba_          37 VPVAIKTLKAG---YTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK----PMMIITEYMENGALDKFLREKD---GE  106 (283)
T ss_dssp             EEEEEEEECTT---CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----SEEEEEECCTTEEHHHHHHHTT---TC
T ss_pred             EEEEEEEECcc---cChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCC----ceEEEEEecccCcchhhhhccc---cc
Confidence            47999998742   23445567899999999999999999999997654    4899999999999999887653   45


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSATRQTY  155 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~aPE~  155 (218)
                      +++..+..++.||+.||.|||+  .+|+||||||+|||++.++.+||+|||+++.           ....||+.|+|||+
T Consensus       107 ~~~~~~~~i~~~i~~gl~~lH~--~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~  184 (283)
T d1mqba_         107 FSVLQLVGMLRGIAAGMKYLAN--MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEA  184 (283)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHH
T ss_pred             ccHHHHHHHHHHHHHhhhhccc--cccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHH
Confidence            9999999999999999999999  7799999999999999999999999999864           23467899999996


Q ss_pred             --CCCCch----------hhhhhhCCCCCCcc
Q psy238          156 --GRPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       156 --~~~~~~----------~~ei~tg~~p~~~~  175 (218)
                        +..++.          +|||++|..|+...
T Consensus       185 l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~  216 (283)
T d1mqba_         185 ISYRKFTSASDVWSFGIVMWEVMTYGERPYWE  216 (283)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             HccCCCCCcccccccHHHHHHHHhCCCCcccc
Confidence              334443          69999976665443

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=222.96  Aligned_cols=163  Identities=23%  Similarity=0.293  Sum_probs=129.5

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||||.+..   .........+.+|+.+|+.++||||+++++++.+.     .+|+||||+++|+|.+++....   
T Consensus        34 ~~~~vaik~~~~---~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~-----~~~iv~E~~~~g~l~~~~~~~~---  102 (273)
T d1mp8a_          34 PALAVAIKTCKN---CTSDSVREKFLQEALTMRQFDHPHIVKLIGVITEN-----PVWIIMELCTLGELRSFLQVRK---  102 (273)
T ss_dssp             CCEEEEEEECTT---TTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-----SCEEEEECCTTEEHHHHHHHTT---
T ss_pred             eeEEEEEEEecc---ccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-----eEEEEEEeccCCcHHhhhhccC---
Confidence            456789998864   23355667899999999999999999999998642     4899999999999999887643   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..         ....+|+.|+|||+
T Consensus       103 ~~l~~~~~~~~~~qi~~gl~ylH~--~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~  180 (273)
T d1mp8a_         103 YSLDLASLILYAYQLSTALAYLES--KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPES  180 (273)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcc--cCeeccccchhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhH
Confidence            458999999999999999999999  7799999999999999999999999999864         34567899999997


Q ss_pred             --CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          156 --GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       156 --~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                        +..++.          +|||+| |..||.+....+.
T Consensus       181 l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~  218 (273)
T d1mp8a_         181 INFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV  218 (273)
T ss_dssp             HHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH
T ss_pred             hccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHH
Confidence              334443          799988 8999987766544

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-33  Score=228.22  Aligned_cols=166  Identities=16%  Similarity=0.158  Sum_probs=135.9

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCC-CCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHND-KPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|+.||||++...   ........+.+|+.+|+.++||||+++++++...... ..++|++++ +.+++|.+++...
T Consensus        29 ~~~~~~~vAvK~i~~~---~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~-~~~g~L~~~l~~~  104 (345)
T d1pmea_          29 DNVNKVRVAIKKISPF---EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTH-LMGADLYKLLKTQ  104 (345)
T ss_dssp             ETTTCSEEEEEEECCT---TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEE-CCCEEHHHHHHHC
T ss_pred             ECCCCcEEEEEEEehh---cChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEe-ecCCchhhhhhcC
Confidence            5789999999999742   2355667889999999999999999999998765332 234555555 5589999999753


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLS  149 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~  149 (218)
                           .+++..++.++.||+.||.|||+  +||+||||||+|||++.++.++|+|||++..           ....||+.
T Consensus       105 -----~l~~~~i~~i~~qil~al~yLH~--~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~  177 (345)
T d1pmea_         105 -----HLSNDHICYFLYQILRGLKYIHS--ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRW  177 (345)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGG
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHH--CCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccce
Confidence                 49999999999999999999999  7799999999999999999999999998864           34568999


Q ss_pred             ccccccCC---CCch----------hhhhhhCCCCCCcchhh
Q psy238          150 ATRQTYGR---PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       150 y~aPE~~~---~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      |+|||+..   .++.          +|+|++|..||......
T Consensus       178 y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~  219 (345)
T d1pmea_         178 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYL  219 (345)
T ss_dssp             GCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             echHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHH
Confidence            99999732   2222          79999999999776543

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=224.66  Aligned_cols=158  Identities=22%  Similarity=0.218  Sum_probs=128.5

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      ++..||||++....     ...+.+.+|+.+|+.++|||||++++++.+.     .+++||||+++|+|.+++.....  
T Consensus        40 ~~~~vAiK~l~~~~-----~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~-----~~~lv~Ey~~~g~l~~~~~~~~~--  107 (285)
T d1fmka3          40 GTTRVAIKTLKPGT-----MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE-----PIYIVTEYMSKGSLLDFLKGETG--  107 (285)
T ss_dssp             TTEEEEEEECCTTS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----SCEEEECCCTTCBHHHHHSHHHH--
T ss_pred             CCCEEEEEEECccc-----CCHHHHHHHHHHHHhcccCCEeEEEEEEecC-----CeEEEEEecCCCchhhhhhhccc--
Confidence            44679999997431     1235789999999999999999999998543     37999999999999999887543  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCccccccccc
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATRQTY  155 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~aPE~  155 (218)
                      ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..         ....+|+.|+|||+
T Consensus       108 ~~l~~~~~~~i~~~i~~gl~~LH~--~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~  185 (285)
T d1fmka3         108 KYLRLPQLVDMAAQIASGMAYVER--MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEA  185 (285)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhh--hheecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHH
Confidence            459999999999999999999999  7799999999999999999999999999864         34678999999997


Q ss_pred             --CCCCch----------hhhhhhCCCCCCcch
Q psy238          156 --GRPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       156 --~~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                        ...++.          +|||+||..|+....
T Consensus       186 ~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~  218 (285)
T d1fmka3         186 ALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM  218 (285)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             HhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCC
Confidence              234443          699999766665443

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-33  Score=222.05  Aligned_cols=164  Identities=18%  Similarity=0.234  Sum_probs=130.5

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK   85 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~   85 (218)
                      +..||||++..... ......+.+.+|+.+|+.++||||+++++++.+.     .+++||||+++++|.+++....   .
T Consensus        36 ~~~vAiK~l~~~~~-~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~-----~~~lv~e~~~~~~l~~~~~~~~---~  106 (273)
T d1u46a_          36 TVSVAVKCLKPDVL-SQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP-----PMKMVTELAPLGSLLDRLRKHQ---G  106 (273)
T ss_dssp             EEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----SCEEEEECCTTCBHHHHHHHHG---G
T ss_pred             EEEEEEEEEChhhc-CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec-----chheeeeeecCcchhhhhhccc---C
Confidence            34799999874322 2244567899999999999999999999999753     3799999999999999888754   3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----------ccCCCcccccccc
Q psy238           86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----------IENKKYLSATRQT  154 (218)
Q Consensus        86 ~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----------~~~~~t~~y~aPE  154 (218)
                      .+++..++.++.|++.||.|||+  ++|+||||||+|||++.++.++|+|||++..           ....+++.|+|||
T Consensus       107 ~l~~~~~~~~~~qi~~gl~ylH~--~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE  184 (273)
T d1u46a_         107 HFLLGTLSRYAVQVAEGMGYLES--KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPE  184 (273)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhh--CCEeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHH
Confidence            49999999999999999999999  7799999999999999999999999999875           2345678999999


Q ss_pred             c--CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          155 Y--GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      +  +..++.          +|||+| |..||.+....+.
T Consensus       185 ~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~  223 (273)
T d1u46a_         185 SLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQI  223 (273)
T ss_dssp             HHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH
T ss_pred             HHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHH
Confidence            7  223333          799998 8999987655543

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-32  Score=223.48  Aligned_cols=160  Identities=16%  Similarity=0.252  Sum_probs=130.9

Q ss_pred             EEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCCC
Q psy238            8 EVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL   87 (218)
Q Consensus         8 ~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~   87 (218)
                      .||+|.+...   ......+.+.+|+.+|+.++|||||+++++|.+..     .+++|+++.+++|.+++....   ..+
T Consensus        40 ~vavK~~~~~---~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~-----~~~v~e~~~~~~l~~~~~~~~---~~~  108 (317)
T d1xkka_          40 PVAIKELREA---TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-----VQLITQLMPFGCLLDYVREHK---DNI  108 (317)
T ss_dssp             EEEEEEECC-------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSS-----EEEEEECCTTCBHHHHHHHTS---SSC
T ss_pred             EEEEEEeccc---cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC-----eeEEEEeccCCcccccccccc---cCC
Confidence            5888888632   22334567899999999999999999999997643     788999999999999887753   459


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCccccccccc--
Q psy238           88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKYLSATRQTY--  155 (218)
Q Consensus        88 ~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t~~y~aPE~--  155 (218)
                      ++..++.++.||+.||.|||+  ++|+||||||+|||++.++.++|+|||++..          ....||+.|+|||+  
T Consensus       109 ~~~~~~~i~~qi~~gl~yLH~--~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~  186 (317)
T d1xkka_         109 GSQYLLNWCVQIAKGMNYLED--RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL  186 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHH--cCcccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHh
Confidence            999999999999999999999  7799999999999999999999999999864          23467999999996  


Q ss_pred             CCCCch----------hhhhhh-CCCCCCcchhhhh
Q psy238          156 GRPISG----------QYEIVT-KTNNVTEKKKEKE  180 (218)
Q Consensus       156 ~~~~~~----------~~ei~t-g~~p~~~~~~ee~  180 (218)
                      +..++.          +|||+| |..||.+....+.
T Consensus       187 ~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~  222 (317)
T d1xkka_         187 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI  222 (317)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGH
T ss_pred             cCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHH
Confidence            334444          699998 8899987765554

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=222.30  Aligned_cols=161  Identities=18%  Similarity=0.150  Sum_probs=129.3

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|..||||++....     ........|+..+..++||||+++++++.+.+.....+|+||||+++|+|.+++...   
T Consensus        24 ~~g~~vAvK~~~~~~-----~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~---   95 (303)
T d1vjya_          24 WRGEEVAVKIFSSRE-----ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---   95 (303)
T ss_dssp             ETTEEEEEEEECGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC---
T ss_pred             ECCEEEEEEEECccc-----hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhcC---
Confidence            468899999997431     122223346666678899999999999988665556789999999999999999763   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcC------CCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCC
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSC------SPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENK  145 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~------~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~  145 (218)
                        .+++..++.++.|++.||.|||+.      .++|+||||||+||||+.++.++|+|||++..            ....
T Consensus        96 --~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~  173 (303)
T d1vjya_          96 --TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRV  173 (303)
T ss_dssp             --CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CC
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceecccccee
Confidence              389999999999999999999973      14799999999999999999999999998764            2457


Q ss_pred             CcccccccccCCCC--------ch----------hhhhhhCCCCCCc
Q psy238          146 KYLSATRQTYGRPI--------SG----------QYEIVTKTNNVTE  174 (218)
Q Consensus       146 ~t~~y~aPE~~~~~--------~~----------~~ei~tg~~p~~~  174 (218)
                      ||+.|+|||+....        +.          +|||+||..|+..
T Consensus       174 gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~  220 (303)
T d1vjya_         174 GTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI  220 (303)
T ss_dssp             SCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTB
T ss_pred             cccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCc
Confidence            89999999984321        11          7999999888753

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-33  Score=221.04  Aligned_cols=162  Identities=19%  Similarity=0.266  Sum_probs=130.0

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccC
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV   84 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~   84 (218)
                      +|..||||+++..      ...+.+.+|+.+++.++||||+++++++.+..   ..+|+||||+++|+|.+++.....  
T Consensus        29 ~~~~vAvK~i~~~------~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~---~~~~lv~ey~~~g~L~~~l~~~~~--   97 (262)
T d1byga_          29 RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK---GGLYIVTEYMAKGSLVDYLRSRGR--   97 (262)
T ss_dssp             TTEEEEEEECCCC------C--HHHHHTHHHHTTCCCTTBCCEEEEECCC-----CCEEEECCCTTEEHHHHHHHHHH--
T ss_pred             CCeEEEEEEECcH------HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecC---CcEEEEEeccCCCCHHHHHHhcCC--
Confidence            5789999999742      23356889999999999999999999986532   248999999999999999976542  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCccccccccc--CC
Q psy238           85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTY--GR  157 (218)
Q Consensus        85 ~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~--~~  157 (218)
                      ..+++..++.++.||+.||.|||+  .+|+||||+|+|||++.++.++|+|||++..     ....+++.|+|||+  +.
T Consensus        98 ~~l~~~~~~~i~~~i~~al~ylH~--~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~  175 (262)
T d1byga_          98 SVLGGDCLLKFSLDVCEAMEYLEG--NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK  175 (262)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhhcccccc--CceeccccchHhheecCCCCEeecccccceecCCCCccccccccCCChHHHhCC
Confidence            348999999999999999999999  7799999999999999999999999999876     45677899999997  33


Q ss_pred             CCch----------hhhhhh-CCCCCCcchhhh
Q psy238          158 PISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       158 ~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      .++.          +|||+| |+.||......+
T Consensus       176 ~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~  208 (262)
T d1byga_         176 KFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD  208 (262)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG
T ss_pred             CCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHH
Confidence            4444          799998 677777655444

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-32  Score=221.47  Aligned_cols=170  Identities=16%  Similarity=0.172  Sum_probs=138.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      +..++..||||++...   ........+.+|+.+|+.++||||+++++++....    .+++||+|+++|+|.+++....
T Consensus        39 ~~~~~~~vAvK~i~~~---~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~----~~~~v~e~~~~g~L~~~l~~~~  111 (301)
T d1lufa_          39 PYEPFTMVAVKMLKEE---ASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK----PMCLLFEYMAYGDLNEFLRSMS  111 (301)
T ss_dssp             TTSSEEEEEEEECCTT---CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHTC
T ss_pred             cCCCCeEEEEEEEChh---cChHHHHHHHHHHHHHHhcCCCCcccceeeeccCC----ceEEEEEecCCCcHHHHHHhcC
Confidence            3467789999998742   23456678999999999999999999999997754    4899999999999999997532


Q ss_pred             c--------------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238           82 R--------------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus        82 ~--------------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .                    ....+++..++.++.|++.||.|||+  .+|+||||||+|||++.++.++|+|||++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~--~~ivHrDlKp~NILld~~~~~Kl~DFGls~~  189 (301)
T d1lufa_         112 PHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE--RKFVHRDLATRNCLVGENMVVKIADFGLSRN  189 (301)
T ss_dssp             C----------------------CCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECGGGCEEECCCSCHHH
T ss_pred             ccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc--CCeEeeEEcccceEECCCCcEEEccchhhee
Confidence            1                    12348899999999999999999999  7799999999999999999999999999864


Q ss_pred             ----------ccCCCccccccccc--CCCCch----------hhhhhhCC-CCCCcchhhhh
Q psy238          142 ----------IENKKYLSATRQTY--GRPISG----------QYEIVTKT-NNVTEKKKEKE  180 (218)
Q Consensus       142 ----------~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~-~p~~~~~~ee~  180 (218)
                                ....+|+.|+|||+  +..++.          +|||++|. .||.+....+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~  251 (301)
T d1lufa_         190 IYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEV  251 (301)
T ss_dssp             HTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH
T ss_pred             ccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHH
Confidence                      34567899999997  434444          79999996 56776655443

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=221.84  Aligned_cols=167  Identities=17%  Similarity=0.204  Sum_probs=126.3

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|+.||||++...   ........+..|+.++..+ +||||+.+++++...+   ..+++|||||++|+|.+++....
T Consensus        40 ~~~~~~vAvK~l~~~---~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~---~~~~iv~E~~~~g~L~~~l~~~~  113 (299)
T d1ywna1          40 TATCRTVAVKMLKEG---ATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG---GPLMVIVEFCKFGNLSTYLRSKR  113 (299)
T ss_dssp             SSCEEEEEEEEC-------CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT---SCCEEEEECCTTCBHHHHHHHTG
T ss_pred             ccCCeEEEEEEEccc---cCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCC---CeEEEEEEecCCCcHHHHHHhcc
Confidence            346788999998742   2244556777888877776 7899999999886543   35899999999999999998654


Q ss_pred             cc------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------
Q psy238           82 RN------------VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------  141 (218)
Q Consensus        82 ~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------  141 (218)
                      ..            ...+++..+..++.||+.||.|||+  ++|+||||||+|||++.++.+||+|||++..        
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~--~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~  191 (299)
T d1ywna1         114 NEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS--RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV  191 (299)
T ss_dssp             GGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECGGGCEEECC------CCSCTTSC
T ss_pred             ccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh--CCCcCCcCCccceeECCCCcEEEccCcchhhcccccccc
Confidence            21            1348899999999999999999999  7799999999999999999999999999864        


Q ss_pred             --ccCCCccccccccc--CCCCch----------hhhhhhCC-CCCCcchh
Q psy238          142 --IENKKYLSATRQTY--GRPISG----------QYEIVTKT-NNVTEKKK  177 (218)
Q Consensus       142 --~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~-~p~~~~~~  177 (218)
                        ....||+.|+|||+  +..++.          +|||+||. .||.+...
T Consensus       192 ~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~  242 (299)
T d1ywna1         192 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI  242 (299)
T ss_dssp             CTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC
T ss_pred             ccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCH
Confidence              34578999999996  334444          68999875 56765543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-33  Score=223.29  Aligned_cols=164  Identities=13%  Similarity=0.188  Sum_probs=132.9

Q ss_pred             CCCCCcEEEEEEeeccccccc--HHHHHHHHHHHHHhhcCC--CCcccceeeeeecCCCCCCeEEEEEeccCC-CCHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNF--KAQEEKIQQVFENLTQLE--HPNIVKFHRYWTDTHNDKPRVIFITEYMSS-GSLKQF   76 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~--~~~~~~~~~ei~~l~~l~--hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~-~sL~~~   76 (218)
                      |..+|+.||||++........  ......+.+|+.+|+.++  ||||+++++++.+.+    .+|+||||+.+ +++.++
T Consensus        25 ~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~----~~~lv~e~~~~~~~l~~~  100 (273)
T d1xwsa_          25 RVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD----SFVLILERPEPVQDLFDF  100 (273)
T ss_dssp             ETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS----EEEEEEECCSSEEEHHHH
T ss_pred             ECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC----eEEEEEEeccCcchHHHH
Confidence            567899999999975322111  112234668999999886  899999999998754    58999999975 578888


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecC-CcEEEeecCcccc------ccCCCccc
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN-GLVKIGCDTYTHT------IENKKYLS  149 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~-~~~ki~dfg~~~~------~~~~~t~~  149 (218)
                      +....    .+++..++.++.||+.||.|||+  ++|+||||||+|||++.+ +.++|+|||++..      ....||+.
T Consensus       101 ~~~~~----~l~e~~~~~~~~qi~~al~~lH~--~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~  174 (273)
T d1xwsa_         101 ITERG----ALQEELARSFFWQVLEAVRHCHN--CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRV  174 (273)
T ss_dssp             HHHHC----SCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGG
T ss_pred             HhccC----CCCHHHHHHHHHHHHHHHHHHHH--CCCccccCcccceEEecCCCeEEECccccceecccccccccccCCC
Confidence            87653    49999999999999999999999  779999999999999855 7999999999865      55689999


Q ss_pred             cccccc--CCCCch-----------hhhhhhCCCCCCcc
Q psy238          150 ATRQTY--GRPISG-----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       150 y~aPE~--~~~~~~-----------~~ei~tg~~p~~~~  175 (218)
                      |+|||+  +..+..           +|+|++|+.||...
T Consensus       175 y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (273)
T d1xwsa_         175 YSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD  213 (273)
T ss_dssp             GSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             cCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc
Confidence            999997  333322           69999999999753

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-32  Score=223.44  Aligned_cols=169  Identities=15%  Similarity=0.176  Sum_probs=141.4

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|+.||||++...  .......+.+.+|+.+|+.++|||||+++++|...+.  ...++|+||||+ +.+|..++..
T Consensus        39 ~~~~~~~vAiK~i~~~--~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~  115 (346)
T d1cm8a_          39 DGRTGAKVAIKKLYRP--FQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH  115 (346)
T ss_dssp             ETTTCCEEEEEECSST--TSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH
T ss_pred             ECCCCCEEEEEEEchh--hcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHHh
Confidence            5678999999999743  2335567789999999999999999999999976542  334689999999 6788887754


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCcccccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQT  154 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE  154 (218)
                           .++++..++.++.||+.||.|||+  +||+||||||+|||++.++.++++|||++..     ....+|+.|+|||
T Consensus       116 -----~~l~~~~~~~~~~qi~~aL~~LH~--~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE  188 (346)
T d1cm8a_         116 -----EKLGEDRIQFLVYQMLKGLRYIHA--AGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPE  188 (346)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTH
T ss_pred             -----ccccHHHHHHHHHHHHHHHHHHHh--CCCcccccCcchhhcccccccccccccceeccCCccccccccccccCHH
Confidence                 349999999999999999999999  7799999999999999999999999999876     5678999999999


Q ss_pred             c--CC-CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          155 Y--GR-PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       155 ~--~~-~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      +  +. .++.          +|+|++|..||.+......
T Consensus       189 ~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~  227 (346)
T d1cm8a_         189 VILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQ  227 (346)
T ss_dssp             HHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             HHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHH
Confidence            6  22 2222          6999999999987755443

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=2.5e-32  Score=218.78  Aligned_cols=164  Identities=17%  Similarity=0.179  Sum_probs=132.0

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      .+|+.||||++....  ........+.+|+.+|+.++||||++++++|.+.+    .++++|+++.++.+..+....   
T Consensus        24 ~~~~~vAvK~i~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~----~~~i~~e~~~~~~~~~~~~~~---   94 (286)
T d1ob3a_          24 NYGETFALKKIRLEK--EDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK----RLVLVFEHLDQDLKKLLDVCE---   94 (286)
T ss_dssp             TTSCEEEEEEECCSS--GGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS----CEEEEEECCSEEHHHHHHTST---
T ss_pred             CCCCEEEEEEEehhh--cChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCC----ceeEEEEeehhhhHHHHHhhc---
Confidence            378999999997542  22334567899999999999999999999998755    589999999765555554433   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccccc
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQTY  155 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aPE~  155 (218)
                       ..+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||.+..        ....+++.|+|||.
T Consensus        95 -~~l~~~~~~~i~~qi~~~L~~LH~--~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~  171 (286)
T d1ob3a_          95 -GGLESVTAKSFLLQLLNGIAYCHD--RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDV  171 (286)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHH
T ss_pred             -CCcchhhhHHHHHHHHHHHHHhcc--CcEEecCCCCceeeEcCCCCEEecccccceecccCccccceecccchhhhHHH
Confidence             459999999999999999999999  7799999999999999999999999998855        34468899999997


Q ss_pred             C--C-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          156 G--R-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 ~--~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      .  . .++.          +++|++|+.||.+....+
T Consensus       172 ~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~  208 (286)
T d1ob3a_         172 LMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD  208 (286)
T ss_dssp             HTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             HhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHH
Confidence            2  2 2233          699999999998765443

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=220.39  Aligned_cols=167  Identities=15%  Similarity=0.224  Sum_probs=132.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |..+|+.||||++.....        ...+|+.+|+.++||||++++++|.....  +..++|+||||+++ ++.+.+..
T Consensus        41 ~~~~~~~vAiK~i~~~~~--------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~-~~~~~l~~  111 (350)
T d1q5ka_          41 LCDSGELVAIKKVLQDKR--------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARH  111 (350)
T ss_dssp             ETTTCCEEEEEEEECCSS--------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSE-EHHHHHHH
T ss_pred             ECCCCCEEEEEEECccch--------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCC-ccHHHHHh
Confidence            567899999999974321        22469999999999999999999876432  34578999999964 55555544


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-cEEEeecCcccc-------ccCCCccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHT-------IENKKYLSAT  151 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~-------~~~~~t~~y~  151 (218)
                      .......+++..++.++.||+.||.|||+  +||+||||||+|||++.++ .++|+|||++..       .+..||..|+
T Consensus       112 ~~~~~~~l~~~~~~~i~~qil~aL~yLH~--~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~  189 (350)
T d1q5ka_         112 YSRAKQTLPVIYVKLYMYQLFRSLAYIHS--FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYR  189 (350)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHHHT--TTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSC
T ss_pred             hhhccCCCCHHHHHHHHHHHHHHHHHHHh--cCCcccCCCcceEEEecCCCceeEecccchhhccCCccccccccccccc
Confidence            33344569999999999999999999999  7799999999999999775 899999999865       4568899999


Q ss_pred             cccc--CC-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          152 RQTY--GR-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       152 aPE~--~~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |||.  +. .++.          +|+|++|..||......+
T Consensus       190 aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~  230 (350)
T d1q5ka_         190 APELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD  230 (350)
T ss_dssp             CHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHH
T ss_pred             ChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHH
Confidence            9996  22 2333          799999999998765443

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-32  Score=220.97  Aligned_cols=171  Identities=16%  Similarity=0.203  Sum_probs=131.3

Q ss_pred             CCCC-CcEEEEEEeecccccccHHHHHHHHHHHHHhhc---CCCCcccceeeeeecCC-CCCCeEEEEEeccCCCCHHHH
Q psy238            2 DTEE-GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQ---LEHPNIVKFHRYWTDTH-NDKPRVIFITEYMSSGSLKQF   76 (218)
Q Consensus         2 d~~~-g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~---l~hp~iv~l~~~~~~~~-~~~~~~~lv~e~~~~~sL~~~   76 (218)
                      |..+ |+.||||++......  ......+.+|+.+|+.   ++||||++++++|.... ....+++++||++.++++...
T Consensus        28 ~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  105 (305)
T d1blxa_          28 DLKNGGRFVALKRVRVQTGE--EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYL  105 (305)
T ss_dssp             ETTTTTEEEEEEEEEEEBCT--TSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHH
T ss_pred             EECCCCEEEEEEEEehhhcc--chHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEeccCCchhhh
Confidence            3444 567999999753221  1122234566666554   48999999999986532 234578999999986555544


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCccc
Q psy238           77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLS  149 (218)
Q Consensus        77 l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~  149 (218)
                      ....   ...+++..++.++.|++.||.|||+  ++|+||||||+|||++.++.++|+|||++..       ....||+.
T Consensus       106 ~~~~---~~~~~~~~~~~~~~qi~~aL~yLH~--~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~  180 (305)
T d1blxa_         106 DKVP---EPGVPTETIKDMMFQLLRGLDFLHS--HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLW  180 (305)
T ss_dssp             HHSC---TTCSCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCT
T ss_pred             hhcc---CCCCCHHHHHHHHHHHHHHHHHHHh--CCEEecCCCccEEEEcCCCCeeecchhhhhhhcccccCCCcccChh
Confidence            4332   2459999999999999999999999  7799999999999999999999999998765       56789999


Q ss_pred             cccccc--CCCCch----------hhhhhhCCCCCCcchhhh
Q psy238          150 ATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       150 y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      |+|||+  +.+++.          +|+|++|..||.+....+
T Consensus       181 Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~  222 (305)
T d1blxa_         181 YRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD  222 (305)
T ss_dssp             TCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             hcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHH
Confidence            999996  445544          799999999998776544

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-31  Score=216.56  Aligned_cols=159  Identities=11%  Similarity=0.167  Sum_probs=132.3

Q ss_pred             cEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcccCCC
Q psy238            7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK   86 (218)
Q Consensus         7 ~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~   86 (218)
                      ..||||+++.   .........+.+|+.+|++++||||+++++++....   +.+++|||||++++|.+++....   ..
T Consensus        56 ~~vAvK~~~~---~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~---~~~~lv~E~~~~g~l~~~~~~~~---~~  126 (311)
T d1r0pa_          56 IHCAVKSLNR---ITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE---GSPLVVLPYMKHGDLRNFIRNET---HN  126 (311)
T ss_dssp             EEEEEEEECC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETT---TEEEEEEECCTTCBHHHHHHCTT---CC
T ss_pred             EEEEEEEECc---ccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecC---CceEEEEEEeecCchhhhhcccc---cc
Confidence            4699999863   233566788999999999999999999999987543   36899999999999999988654   34


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCCCcccccccc
Q psy238           87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENKKYLSATRQT  154 (218)
Q Consensus        87 ~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~~t~~y~aPE  154 (218)
                      +++..++.++.|++.||.|||+  .+|+||||||+|||++.++.++|+|||++..            ....||+.|+|||
T Consensus       127 ~~~~~~~~i~~qia~gL~~lH~--~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  204 (311)
T d1r0pa_         127 PTVKDLIGFGLQVAKGMKFLAS--KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALE  204 (311)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHH
T ss_pred             chHHHHHHHHHHHHHhhhhhcc--cCcccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChH
Confidence            7888999999999999999999  6799999999999999999999999999864            2346789999999


Q ss_pred             c--CCCCch----------hhhhhhCCCCCCcch
Q psy238          155 Y--GRPISG----------QYEIVTKTNNVTEKK  176 (218)
Q Consensus       155 ~--~~~~~~----------~~ei~tg~~p~~~~~  176 (218)
                      +  ...++.          +|||+||..||....
T Consensus       205 ~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~  238 (311)
T d1r0pa_         205 SLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  238 (311)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC--
T ss_pred             HHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCC
Confidence            7  223333          799999888886543

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=215.17  Aligned_cols=168  Identities=16%  Similarity=0.191  Sum_probs=136.5

Q ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            4 EEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      .++..||||+++..   ........+.+|+.+++.++||||+++++++....    .+++||||+++|+|.+++..... 
T Consensus        48 ~~~~~VAvK~~~~~---~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~----~~~lv~e~~~~g~l~~~~~~~~~~  120 (308)
T d1p4oa_          48 EPETRVAIKTVNEA---ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ----PTLVIMELMTRGDLKSYLRSLRPA  120 (308)
T ss_dssp             EEEEEEEEEECCTT---SCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS----SCEEEEECCTTCBHHHHHHHHHHH
T ss_pred             CCCcEEEEEEECcc---cChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC----ceeEEEeecCCCCHHHHHHhcccc
Confidence            34678999999742   23455667899999999999999999999997644    48999999999999999876431 


Q ss_pred             -----cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------ccCCCc
Q psy238           83 -----NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------IENKKY  147 (218)
Q Consensus        83 -----~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------~~~~~t  147 (218)
                           ....+++..+..++.|++.||.|||+  .+|+||||||+|||++.++.++|+|||++..          ....+|
T Consensus       121 ~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~--~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t  198 (308)
T d1p4oa_         121 MANNPVLAPPSLSKMIQMAGEIADGMAYLNA--NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP  198 (308)
T ss_dssp             HHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH--TTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEEC
T ss_pred             cccccccCCCCHHHHHHHHHHHHHHHHHHhh--CCeeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecc
Confidence                 11236888999999999999999999  7799999999999999999999999999864          344678


Q ss_pred             cccccccc--CCCCch----------hhhhhhCC-CCCCcchhhhh
Q psy238          148 LSATRQTY--GRPISG----------QYEIVTKT-NNVTEKKKEKE  180 (218)
Q Consensus       148 ~~y~aPE~--~~~~~~----------~~ei~tg~-~p~~~~~~ee~  180 (218)
                      +.|+|||.  +..++.          ++||+||. .||.+....+.
T Consensus       199 ~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~  244 (308)
T d1p4oa_         199 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQV  244 (308)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHH
T ss_pred             cccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            99999997  333333          79999985 67766555443

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-31  Score=213.75  Aligned_cols=166  Identities=17%  Similarity=0.232  Sum_probs=136.1

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhcc-
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-   82 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-   82 (218)
                      ++..||||+++..   ........+.+|...+..+ +|||||+++++|.+.+    .+++||||+++|+|.+++..... 
T Consensus        44 ~~~~vAvK~~~~~---~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~----~~~~v~e~~~~g~l~~~i~~~~~~  116 (299)
T d1fgka_          44 RVTKVAVKMLKSD---ATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG----PLYVIVEYASKGNLREYLQARRPP  116 (299)
T ss_dssp             CEEEEEEECCCTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEECCCTTCBHHHHHHTTSCC
T ss_pred             CceEEEEEEECcc---cChHHHHHHHHHHHHHHHhcCCCeEEecccccccCC----eEEEEEEccCCCcHHHHHHhhcCC
Confidence            3467999999742   2345567788888888888 8999999999998754    58999999999999999976532 


Q ss_pred             -----------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc----------
Q psy238           83 -----------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT----------  141 (218)
Q Consensus        83 -----------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~----------  141 (218)
                                 ....+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..          
T Consensus       117 ~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~--~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~  194 (299)
T d1fgka_         117 GLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS--KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT  194 (299)
T ss_dssp             ------------CCCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCC
T ss_pred             ccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh--CCEEeeeecccceeecCCCCeEeccchhhcccccccccccc
Confidence                       12358999999999999999999999  7799999999999999999999999999875          


Q ss_pred             ccCCCccccccccc--CCCCch----------hhhhhh-CCCCCCcchhhh
Q psy238          142 IENKKYLSATRQTY--GRPISG----------QYEIVT-KTNNVTEKKKEK  179 (218)
Q Consensus       142 ~~~~~t~~y~aPE~--~~~~~~----------~~ei~t-g~~p~~~~~~ee  179 (218)
                      ....+|+.|+|||+  +..++.          +|+|++ |..||.+....+
T Consensus       195 ~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~  245 (299)
T d1fgka_         195 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE  245 (299)
T ss_dssp             TTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred             ccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHH
Confidence            33578899999996  334444          699998 688887655443

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-31  Score=215.29  Aligned_cols=167  Identities=19%  Similarity=0.227  Sum_probs=135.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      +..++..||||++...   ........+.+|+.++..+ +|||||++++++.+..    .+++|||||++|+|.+++...
T Consensus        49 ~~~~~~~vAvK~i~~~---~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~----~~~lvmE~~~~g~l~~~l~~~  121 (311)
T d1t46a_          49 KSDAAMTVAVKMLKPS---AHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG----PTLVITEYCCYGDLLNFLRRK  121 (311)
T ss_dssp             STTCEEEEEEEEECTT---CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----SCEEEEECCTTEEHHHHHHHT
T ss_pred             cCCCCeEEEEEEECcc---cCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC----EEEEEEEcCCCCCHHHHHHhc
Confidence            3467789999999743   3345667889999999998 7999999999997754    489999999999999999865


Q ss_pred             cc--------------cCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----
Q psy238           81 KR--------------NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----  141 (218)
Q Consensus        81 ~~--------------~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----  141 (218)
                      ..              ....+++..+..++.||+.||.|||+  ++++||||||+|||++.++.++|+|||++..     
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~--~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~  199 (311)
T d1t46a_         122 RDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS--KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDS  199 (311)
T ss_dssp             TTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCT
T ss_pred             cccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh--CCeeecccccccccccccCcccccccchheeccCCC
Confidence            31              12358899999999999999999999  7799999999999999999999999999875     


Q ss_pred             -----ccCCCccccccccc--CCCCch----------hhhhhhCCCC-CCcchh
Q psy238          142 -----IENKKYLSATRQTY--GRPISG----------QYEIVTKTNN-VTEKKK  177 (218)
Q Consensus       142 -----~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p-~~~~~~  177 (218)
                           ....||+.|+|||+  ...++.          +++|+|+..| |.....
T Consensus       200 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~  253 (311)
T d1t46a_         200 NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV  253 (311)
T ss_dssp             TSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS
T ss_pred             cceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCH
Confidence                 34577899999996  223333          7999995555 544433

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-31  Score=217.04  Aligned_cols=170  Identities=16%  Similarity=0.221  Sum_probs=131.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCC----CCCCeEEEEEeccCCCCHHHHH
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTH----NDKPRVIFITEYMSSGSLKQFL   77 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~----~~~~~~~lv~e~~~~~sL~~~l   77 (218)
                      |..+|+.||||++.....  .......+.+|+.+|+.++||||+++++++....    ....++|+||||+.++.+..+.
T Consensus        31 ~~~~~~~vAvK~i~~~~~--~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~  108 (318)
T d3blha1          31 HRKTGQKVALKKVLMENE--KEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLS  108 (318)
T ss_dssp             ETTTCCEEEEEEC----C--TTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEEEEECCCEEHHHHHT
T ss_pred             ECCCCCEEEEEEEehhhc--chHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEEEEeccCCCccchhh
Confidence            567899999999875422  2334466889999999999999999999986532    1234689999999765554443


Q ss_pred             HhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc------------ccCC
Q psy238           78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT------------IENK  145 (218)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~------------~~~~  145 (218)
                      ...    ..+++..++.++.|++.||.|||+  .+|+||||||+|||++.++.++|+|||++..            ....
T Consensus       109 ~~~----~~~~~~~~~~i~~qil~~l~~lH~--~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  182 (318)
T d3blha1         109 NVL----VKFTLSEIKRVMQMLLNGLYYIHR--NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRV  182 (318)
T ss_dssp             CTT----CCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCC
T ss_pred             hcc----cccccHHHHHHHHHHHHHHHHhcc--CCEEecCcCchheeecCCCcEEeeecceeeeccccccccccccccee
Confidence            322    459999999999999999999999  7799999999999999999999999999854            3356


Q ss_pred             Cccccccccc--CC-CCch----------hhhhhhCCCCCCcchhhh
Q psy238          146 KYLSATRQTY--GR-PISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       146 ~t~~y~aPE~--~~-~~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                      ||+.|+|||+  +. .++.          +++|++|+.||.+....+
T Consensus       183 gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~  229 (318)
T d3blha1         183 VTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH  229 (318)
T ss_dssp             SCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             cCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHH
Confidence            8999999996  22 3333          799999999998755443

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.3e-31  Score=216.31  Aligned_cols=166  Identities=17%  Similarity=0.142  Sum_probs=132.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC--CCCeEEEEEeccCCCCHHHHHHh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN--DKPRVIFITEYMSSGSLKQFLKR   79 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~   79 (218)
                      |+.+|+.||||++...  .........+.+|+.+|+.++||||++++++|...+.  ...++|+||||+. +++...+. 
T Consensus        38 d~~t~~~vAvK~i~~~--~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~-~~l~~~~~-  113 (355)
T d2b1pa1          38 DAVLDRNVAIKKLSRP--FQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMD-ANLCQVIQ-  113 (355)
T ss_dssp             ETTTTEEEEEEEEEST--TSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCS-EEHHHHHT-
T ss_pred             ECCCCCEEEEEEEChh--hcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEEeccc-hHHHHhhh-
Confidence            6789999999999753  2234556788999999999999999999999976432  3468999999996 45655553 


Q ss_pred             hcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------ccCCCcccccc
Q psy238           80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                           ..+++..++.++.||+.||.|||+  .||+||||||+|||++.++.++++|||++..       ....+|+.|+|
T Consensus       114 -----~~~~~~~i~~~~~qil~gl~~LH~--~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~a  186 (355)
T d2b1pa1         114 -----MELDHERMSYLLYQMLCGIKHLHS--AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRA  186 (355)
T ss_dssp             -----SCCCHHHHHHHHHHHHHHHHHHHH--TTCCCSCCCGGGEEECTTCCEEECCCCC---------------CCTTCC
T ss_pred             -----cCCCHHHHHHHHHHHHHHHHHhhh--cccccccCCccccccccccceeeechhhhhccccccccccccccccccC
Confidence                 348999999999999999999999  7799999999999999999999999998765       45678999999


Q ss_pred             ccc--CCCCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTY--GRPISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~--~~~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||+  +..++.          +++|++|..||.+....
T Consensus       187 PE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~  224 (355)
T d2b1pa1         187 PEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI  224 (355)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             hhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHH
Confidence            997  333333          79999999999866543

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.97  E-value=1.7e-31  Score=217.81  Aligned_cols=159  Identities=16%  Similarity=0.152  Sum_probs=131.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|+.||||++...       ....+.+|+.+|..+. ||||++++++|....  ...+++||||+++++|..+.   
T Consensus        56 ~~~~~~~vAiK~i~~~-------~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~--~~~~~~v~e~~~~~~L~~~~---  123 (328)
T d3bqca1          56 NITNNEKVVVKILKPV-------KKKKIKREIKILENLRGGPNIITLADIVKDPV--SRTPALVFEHVNNTDFKQLY---  123 (328)
T ss_dssp             ETTTTEEEEEEEECSS-------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTT--TCSEEEEEECCCSCBGGGTT---
T ss_pred             ECCCCCEEEEEEECHH-------HHHHHHHHHHHHHhccCCCCCcEEEEEEEecC--CCceeEEEeecCCCcHHHHh---
Confidence            5678999999999732       2346789999999995 999999999987643  24689999999999987653   


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC-cEEEeecCcccc-------ccCCCcccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG-LVKIGCDTYTHT-------IENKKYLSATR  152 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~-~~ki~dfg~~~~-------~~~~~t~~y~a  152 (218)
                          ..+++..++.++.||+.||.|||+  +||+||||||+|||++.++ .++|+|||++..       ....+|+.|+|
T Consensus       124 ----~~l~e~~i~~i~~qil~aL~~LH~--~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~a  197 (328)
T d3bqca1         124 ----QTLTDYDIRFYMYEILKALDYCHS--MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKG  197 (328)
T ss_dssp             ----TSCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGGCC
T ss_pred             ----cCCCHHHHHHHHHHHHHHHHHHhh--cccccccccccceEEcCCCCeeeecccccceeccCCCcccccccCccccC
Confidence                349999999999999999999999  7799999999999998654 699999999865       45678999999


Q ss_pred             cccCC---CCch----------hhhhhhCCCCCCcchhh
Q psy238          153 QTYGR---PISG----------QYEIVTKTNNVTEKKKE  178 (218)
Q Consensus       153 PE~~~---~~~~----------~~ei~tg~~p~~~~~~e  178 (218)
                      ||...   .++.          ++++++|+.||......
T Consensus       198 PE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~  236 (328)
T d3bqca1         198 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDN  236 (328)
T ss_dssp             HHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSH
T ss_pred             cccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchh
Confidence            99722   2232          69999999999766543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.2e-32  Score=218.99  Aligned_cols=168  Identities=15%  Similarity=0.211  Sum_probs=138.6

Q ss_pred             CCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC-CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            3 TEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH-PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         3 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h-p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      ..+|+.||||++............+.+.+|+.+|++++| |||+++++++.+..    .+++||||+.+++|.+++....
T Consensus        49 ~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~----~~~~v~e~~~~~~L~~~i~~~~  124 (322)
T d1vzoa_          49 HDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET----KLHLILDYINGGELFTHLSQRE  124 (322)
T ss_dssp             TTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT----EEEEEECCCCSCBHHHHHHHHS
T ss_pred             CCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC----ceeeeeecccccHHHHHHHhcc
Confidence            568999999999754322222334567899999999965 89999999998755    5999999999999999998764


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc---------ccCCCcccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT---------IENKKYLSATR  152 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~---------~~~~~t~~y~a  152 (218)
                          .+++..++.++.||+.||.|||+  .+|+||||||+|||++.++.++|+|||++..         ....|++.|+|
T Consensus       125 ----~~~e~~~~~~~~Qi~~al~~lH~--~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~  198 (322)
T d1vzoa_         125 ----RFTEHEVQIYVGEIVLALEHLHK--LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMA  198 (322)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCC
T ss_pred             ----cccHHHHHHHHHHHHHHHHHhhc--CCEEeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccch
Confidence                38899999999999999999999  7799999999999999999999999998854         45678999999


Q ss_pred             cccC--C--CCch----------hhhhhhCCCCCCcchhhhh
Q psy238          153 QTYG--R--PISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       153 PE~~--~--~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ||..  .  .++.          +|+|++|..||.+......
T Consensus       199 pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~  240 (322)
T d1vzoa_         199 PDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS  240 (322)
T ss_dssp             HHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC
T ss_pred             hHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            9962  1  1222          7999999999987655443

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-31  Score=217.18  Aligned_cols=169  Identities=16%  Similarity=0.176  Sum_probs=133.7

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCC-CCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN-DKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|+.||||++...  .........+.+|+.+|+.++|||||++++++..... .....+++|+++.+++|.+++.. 
T Consensus        39 ~~~~~~~vAiK~i~~~--~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~-  115 (348)
T d2gfsa1          39 DTKTGLRVAVKKLSRP--FQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC-  115 (348)
T ss_dssp             ETTTTEEEEEEECSCT--TSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTT-
T ss_pred             ECCCCCEEEEEEECch--hcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhccc-
Confidence            5789999999999743  2234556778999999999999999999999865432 12234455566678999999854 


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-----ccCCCccccccccc
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-----IENKKYLSATRQTY  155 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-----~~~~~t~~y~aPE~  155 (218)
                          ..+++..++.++.||+.||.|||+  +||+||||||+|||++.++.++++|||++..     .+..||..|+|||+
T Consensus       116 ----~~l~e~~~~~i~~qil~aL~~LH~--~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~  189 (348)
T d2gfsa1         116 ----QKLTDDHVQFLIYQILRGLKYIHS--ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI  189 (348)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCGGGEEECTTCCEEECCC----CCTGGGSSSCHHHHTSCHHH
T ss_pred             ----ccccHHHHHHHHHHHHHHHHHHHh--CCCcccccCCccccccccccccccccchhcccCcccccccccccccCchh
Confidence                349999999999999999999999  7799999999999999999999999999865     56788999999996


Q ss_pred             --CCC-Cch----------hhhhhhCCCCCCcchhhh
Q psy238          156 --GRP-ISG----------QYEIVTKTNNVTEKKKEK  179 (218)
Q Consensus       156 --~~~-~~~----------~~ei~tg~~p~~~~~~ee  179 (218)
                        +.. .+.          +|+|++|..||.+.....
T Consensus       190 ~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~  226 (348)
T d2gfsa1         190 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID  226 (348)
T ss_dssp             HTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             hcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHH
Confidence              211 122          799999999998765443

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.5e-31  Score=212.81  Aligned_cols=167  Identities=17%  Similarity=0.251  Sum_probs=129.8

Q ss_pred             CCCc--EEEEEEeecccccccHHHHHHHHHHHHHhhcC-CCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            4 EEGV--EVVWNEVQFSERKNFKAQEEKIQQVFENLTQL-EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         4 ~~g~--~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l-~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      .+|.  .||||.+...   ......+.+.+|+.+|+.+ +|||||+++++|.+.+    .+++||||+++|+|.++|...
T Consensus        33 ~~~~~~~vaiK~~~~~---~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~----~~~iV~ey~~~g~L~~~l~~~  105 (309)
T d1fvra_          33 KDGLRMDAAIKRMKEY---ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG----YLYLAIEYAPHGNLLDFLRKS  105 (309)
T ss_dssp             ETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT----EEEEEECCCTTCBHHHHHHTT
T ss_pred             CCCeEEEEEEEEECcc---cChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCC----eeEEEEEecCCCcHHHHHhhc
Confidence            3554  4777877532   2234556799999999998 7999999999998754    699999999999999999754


Q ss_pred             c------------ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc-------
Q psy238           81 K------------RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT-------  141 (218)
Q Consensus        81 ~------------~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~-------  141 (218)
                      .            .....+++..++.++.||+.||.|||+  ++|+||||+|+|||++.++.++|+|||++..       
T Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~--~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~~  183 (309)
T d1fvra_         106 RVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ--KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK  183 (309)
T ss_dssp             CHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH--TTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC
T ss_pred             cccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc--CCccccccccceEEEcCCCceEEccccccccccccccc
Confidence            1            223569999999999999999999999  7799999999999999999999999999865       


Q ss_pred             ccCCCccccccccc--CCCCch----------hhhhhhCCC-CCCcchhhh
Q psy238          142 IENKKYLSATRQTY--GRPISG----------QYEIVTKTN-NVTEKKKEK  179 (218)
Q Consensus       142 ~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~-p~~~~~~ee  179 (218)
                      ....+|..|+|||.  ...++.          +|+|++|.. ||.+....+
T Consensus       184 ~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~  234 (309)
T d1fvra_         184 TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE  234 (309)
T ss_dssp             ----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             cceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHH
Confidence            34578999999997  223333          689999765 676554443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=208.03  Aligned_cols=164  Identities=18%  Similarity=0.202  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++....  ........+.+|+.+|+.++||||+++++++.+..    .+++|++++.+++|..++... 
T Consensus        23 ~~~~~~~vAvK~i~~~~--~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~----~~~iv~~~~~~~~l~~~~~~~-   95 (292)
T d1unla_          23 NRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDK----KLTLVFEFCDQDLKKYFDSCN-   95 (292)
T ss_dssp             ETTTCCEEEEEEEESSC--SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS----EEEEEEECCSEEHHHHHHHTT-
T ss_pred             ECCCCcEEEEEEEehhh--CChHHHHHHHHHHHHHHhcCcCCEEeecccccccc----ceeEEeeeccccccccccccc-
Confidence            56899999999997542  23456678999999999999999999999998765    589999999888888877654 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCcccc--------ccCCCccccccc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT--------IENKKYLSATRQ  153 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~--------~~~~~t~~y~aP  153 (218)
                         ..+++..++.++.|++.||.|||+  ++|+||||||+|||++.++.++|+|||.+..        ....++..|+||
T Consensus        96 ---~~~~~~~~~~~~~q~~~aL~~lH~--~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~p  170 (292)
T d1unla_          96 ---GDLDPEIVKSFLFQLLKGLGFCHS--RNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPP  170 (292)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHHHHHHH--TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCH
T ss_pred             ---cccchhHHHHHHHHHHHHHHHhhc--CCEeeecccCcccccccCCceeeeecchhhcccCCCccceeeccccchhhh
Confidence               458999999999999999999999  7799999999999999999999999999875        344567889999


Q ss_pred             ccC--CC-Cch----------hhhhhhCCCCCCcchh
Q psy238          154 TYG--RP-ISG----------QYEIVTKTNNVTEKKK  177 (218)
Q Consensus       154 E~~--~~-~~~----------~~ei~tg~~p~~~~~~  177 (218)
                      |+.  .. ++.          +++|++|+.||.....
T Consensus       171 e~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~  207 (292)
T d1unla_         171 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND  207 (292)
T ss_dssp             HHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSS
T ss_pred             hHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCC
Confidence            962  22 222          7999999999754433

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.97  E-value=4.6e-30  Score=206.31  Aligned_cols=163  Identities=10%  Similarity=0.093  Sum_probs=132.5

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCC-CcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhh
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH-PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT   80 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~h-p~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~   80 (218)
                      |..+|+.||||++.....      ...+.+|++++..+.| +|++.+++++....    ..++||||+ +++|.+++...
T Consensus        26 ~~~~~~~vAvK~~~~~~~------~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~----~~~~vme~~-~~~l~~~~~~~   94 (293)
T d1csna_          26 NLLNNQQVAIKFEPRRSD------APQLRDEYRTYKLLAGCTGIPNVYYFGQEGL----HNVLVIDLL-GPSLEDLLDLC   94 (293)
T ss_dssp             ETTTTEEEEEEEEECCTT------SCCHHHHHHHHHHTTTCTTCCCEEEEEEETT----EEEEEEECC-CCBHHHHHHHT
T ss_pred             ECCCCCEEEEEEEccccC------cHHHHHHHHHHHHhcCCCCCCEEEEEeecCC----ccEEEEEec-CCCHHHHHHhh
Confidence            567899999999864321      1246678888888865 89999999887643    689999999 68999998765


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEec-----CCcEEEeecCcccc--------------
Q psy238           81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQH-----NGLVKIGCDTYTHT--------------  141 (218)
Q Consensus        81 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~-----~~~~ki~dfg~~~~--------------  141 (218)
                      .   ..++...+..++.|++.||.|||+  .||+||||||+|||++.     ++.++|+|||++..              
T Consensus        95 ~---~~~~~~~~~~i~~q~~~~l~~lH~--~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~  169 (293)
T d1csna_          95 G---RKFSVKTVAMAAKQMLARVQSIHE--KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYRE  169 (293)
T ss_dssp             T---TCCCHHHHHHHHHHHHHHHHHHHT--TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCC
T ss_pred             c---cchhhHHHHHHHHHHHHHHHHHHH--CCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecc
Confidence            3   359999999999999999999999  77999999999999974     57899999999864              


Q ss_pred             -ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          142 -IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       142 -~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                       ....||+.|+|||+  +.+++.          +|+|++|..||.+......
T Consensus       170 ~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~  221 (293)
T d1csna_         170 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATN  221 (293)
T ss_dssp             CCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCH
T ss_pred             cCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhH
Confidence             23468999999997  434444          7999999999986655433

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=4.3e-29  Score=200.97  Aligned_cols=164  Identities=15%  Similarity=0.114  Sum_probs=126.8

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhc
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK   81 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~   81 (218)
                      |..+|+.||||++.....      ...+..|+++++.++|++++.++..+....   ...++||+|+ +++|.+.+....
T Consensus        28 ~~~~~~~vAvK~~~~~~~------~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~---~~~~ivme~~-~~~l~~~~~~~~   97 (299)
T d1ckia_          28 DIAAGEEVAIKLECVKTK------HPQLHIESKIYKMMQGGVGIPTIRWCGAEG---DYNVMVMELL-GPSLEDLFNFCS   97 (299)
T ss_dssp             ETTTTEEEEEEEEESCTT------SCCHHHHHHHHHHSTTSTTCCCEEEEEEET---TEEEEEEECC-CCBHHHHHHHTT
T ss_pred             ECCCCCEEEEEEEchhcc------CHHHHHHHHHHHHccCCCcccEEEEEEecC---CEEEEEEEEc-CCchhhhhhhcc
Confidence            567899999999875322      134678999999998777666555444332   3689999999 578877776543


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEe---cCCcEEEeecCcccc---------------cc
Q psy238           82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ---HNGLVKIGCDTYTHT---------------IE  143 (218)
Q Consensus        82 ~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~---~~~~~ki~dfg~~~~---------------~~  143 (218)
                         ..+++..+..++.|++.||.|||+  ++|+||||||+|||++   .+..++|+|||++..               ..
T Consensus        98 ---~~~~~~~~~~~~~qi~~~l~~lH~--~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~  172 (299)
T d1ckia_          98 ---RKFSLKTVLLLADQMISRIEYIHS--KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKN  172 (299)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHHHHHHH--TTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCS
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHH--CCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCC
Confidence               459999999999999999999999  7799999999999985   456799999999864               23


Q ss_pred             CCCccccccccc--CCCCch----------hhhhhhCCCCCCcchhhhh
Q psy238          144 NKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEKKKEKE  180 (218)
Q Consensus       144 ~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~~~ee~  180 (218)
                      ..||+.|+|||+  +.+++.          ++++++|..||........
T Consensus       173 ~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~  221 (299)
T d1ckia_         173 LTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK  221 (299)
T ss_dssp             CCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC----
T ss_pred             cCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHH
Confidence            478999999997  334443          7999999999987655443

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1e-24  Score=179.32  Aligned_cols=164  Identities=18%  Similarity=0.217  Sum_probs=121.6

Q ss_pred             CCCCCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-----------CCcccceeeeeecCCCCCCeEEEEEeccCC
Q psy238            2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-----------HPNIVKFHRYWTDTHNDKPRVIFITEYMSS   70 (218)
Q Consensus         2 d~~~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-----------hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~   70 (218)
                      |..+|+.||||++...     ....+.+.+|+.+++.++           ||||+++++++...+.  ...+++|.++..
T Consensus        34 ~~~~g~~vAvKvi~~~-----~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~--~~~~~~~~~~~~  106 (362)
T d1q8ya_          34 DMVNNTHVAMKIVRGD-----KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP--NGVHVVMVFEVL  106 (362)
T ss_dssp             ETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEET--TEEEEEEEECCC
T ss_pred             ECCCCCEEEEEEEecc-----ccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccc--cceeeeeeeccc
Confidence            5689999999999742     334566778888887764           5789999998876443  245566665543


Q ss_pred             C-CHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCC------cEEEeecCcccc--
Q psy238           71 G-SLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG------LVKIGCDTYTHT--  141 (218)
Q Consensus        71 ~-sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~------~~ki~dfg~~~~--  141 (218)
                      + +........  ....+++..++.++.||+.||.|||+. .||+||||||+|||++.++      .++++|||.+..  
T Consensus       107 ~~~~~~~~~~~--~~~~~~~~~i~~i~~qil~al~~lh~~-~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~  183 (362)
T d1q8ya_         107 GENLLALIKKY--EHRGIPLIYVKQISKQLLLGLDYMHRR-CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD  183 (362)
T ss_dssp             CEEHHHHHHHT--TTSCCCHHHHHHHHHHHHHHHHHHHHT-TCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT
T ss_pred             ccccccccccc--cccCCcHHHHHHHHHHHHHHHHHHhhh-cCcccccCChhHeeeeccCcccccceeeEeecccccccc
Confidence            3 333333333  235689999999999999999999972 4599999999999998664      499999999865  


Q ss_pred             ---ccCCCccccccccc--CCCCch----------hhhhhhCCCCCCcc
Q psy238          142 ---IENKKYLSATRQTY--GRPISG----------QYEIVTKTNNVTEK  175 (218)
Q Consensus       142 ---~~~~~t~~y~aPE~--~~~~~~----------~~ei~tg~~p~~~~  175 (218)
                         ....||+.|+|||+  ...++.          +++|++|+.||...
T Consensus       184 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~  232 (362)
T d1q8ya_         184 EHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD  232 (362)
T ss_dssp             BCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             cccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCC
Confidence               56778999999996  333333          68999999999744

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.80  E-value=8.3e-20  Score=137.03  Aligned_cols=120  Identities=14%  Similarity=0.125  Sum_probs=88.8

Q ss_pred             CCCcEEEEEEeeccccc--------------ccHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCCCeEEEEEeccC
Q psy238            4 EEGVEVVWNEVQFSERK--------------NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMS   69 (218)
Q Consensus         4 ~~g~~vAvK~~~~~~~~--------------~~~~~~~~~~~ei~~l~~l~hp~iv~l~~~~~~~~~~~~~~~lv~e~~~   69 (218)
                      .+|..||||++..+...              ........+..|...+..+.|++++..+++..        .+++|+|++
T Consensus        22 ~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~~--------~~lvme~~~   93 (191)
T d1zara2          22 EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWEG--------NAVLMELID   93 (191)
T ss_dssp             TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEET--------TEEEEECCC
T ss_pred             CCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEecC--------CEEEEEeec
Confidence            47899999987632110              00112344567888999999999998876532        389999998


Q ss_pred             CCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCcEEEecCCcEEEeecCccccccCC
Q psy238           70 SGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENK  145 (218)
Q Consensus        70 ~~sL~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~~~~~  145 (218)
                      +..+.           .++...+..++.|++.||.|||+  .||+||||||+|||+++++ ++|+|||.+......
T Consensus        94 ~~~~~-----------~l~~~~~~~i~~ql~~~l~~lH~--~giiHrDiKP~NILv~~~~-~~liDFG~a~~~~~~  155 (191)
T d1zara2          94 AKELY-----------RVRVENPDEVLDMILEEVAKFYH--RGIVHGDLSQYNVLVSEEG-IWIIDFPQSVEVGEE  155 (191)
T ss_dssp             CEEGG-----------GCCCSCHHHHHHHHHHHHHHHHH--TTEECSCCSTTSEEEETTE-EEECCCTTCEETTST
T ss_pred             ccccc-----------chhhHHHHHHHHHHHHHHHHHhh--CCEEEccCChhheeeeCCC-EEEEECCCcccCCCC
Confidence            65432           14555677899999999999999  6799999999999998654 889999988754333

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.54  E-value=8.6e-08  Score=73.42  Aligned_cols=120  Identities=9%  Similarity=0.028  Sum_probs=72.8

Q ss_pred             CCcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCCCHHHHHHhhccc
Q psy238            5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN   83 (218)
Q Consensus         5 ~g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~   83 (218)
                      ++..++||+.......    ....+.+|..++..+. +--+.+++.++.+.    +..++||++++|.++.......   
T Consensus        36 ~~~~~vlk~~~~~~~~----~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~----~~~~lv~~~l~G~~~~~~~~~~---  104 (263)
T d1j7la_          36 ENENLYLKMTDSRYKG----TTYDVEREKDMMLWLEGKLPVPKVLHFERHD----GWSNLLMSEADGVLCSEEYEDE---  104 (263)
T ss_dssp             SSCEEEEEEECGGGTT----STTCHHHHHHHHHHHTTTSCCCCEEEEEEET----TEEEEEEECCSSEEHHHHTTTC---
T ss_pred             CCCeEEEEEcCCCccc----chhhHHHHHHHHHHHhccCCCCcEEEEEecC----CceEEEEEeccccccccccccc---
Confidence            4567888887643211    2223566676666553 33356777666543    3579999999987775543210   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------------------------
Q psy238           84 VKKLPLSAWKRWCSQILSALSYLHSCS-----------------------------------------------------  110 (218)
Q Consensus        84 ~~~~~~~~~~~~~~qi~~~l~~lH~~~-----------------------------------------------------  110 (218)
                         ..   ...++.++...+..||+..                                                     
T Consensus       105 ---~~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (263)
T d1j7la_         105 ---QS---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEK  178 (263)
T ss_dssp             ---SC---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHHHHHHHSC
T ss_pred             ---cc---HHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHhcC
Confidence               11   1122333333344444311                                                     


Q ss_pred             ----CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 ----PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ----~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                          ..++|+|+.|.|||++.++.+-|+||+.+..
T Consensus       179 ~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         179 PEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             CCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             CcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                2378999999999999877777999987765

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.16  E-value=1.2e-06  Score=66.57  Aligned_cols=29  Identities=10%  Similarity=0.109  Sum_probs=25.6

Q ss_pred             cccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          113 IIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       113 iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      ++|+|+.|.|||++.+..+-|+||+.+..
T Consensus       177 liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         177 VTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             EEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            79999999999999877778999987764

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.58  E-value=0.00015  Score=58.48  Aligned_cols=29  Identities=24%  Similarity=0.451  Sum_probs=25.1

Q ss_pred             CcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          112 PIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       112 ~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .++|+|+.|.|||++.++ +.|+||.++..
T Consensus       224 ~LiHGDl~~gNIlv~~~~-~~vID~E~a~~  252 (392)
T d2pula1         224 TLIHGDLHTGSIFASEHE-TKVIDPEFAFY  252 (392)
T ss_dssp             EEECSCCCGGGEEECSSC-EEECCCTTCEE
T ss_pred             ceeccCCcCCceeEcCCc-eEEechhhccc
Confidence            589999999999998765 89999987765

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00032  Score=54.96  Aligned_cols=29  Identities=14%  Similarity=0.109  Sum_probs=23.8

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .++||+|+.|.|||++. + ..++||+.+..
T Consensus       192 ~~liHgDlh~~NvL~~~-~-~~~IDFdd~~~  220 (325)
T d1zyla1         192 VLRLHGDCHAGNILWRD-G-PMFVDLDDARN  220 (325)
T ss_dssp             CEECCSSCSGGGEEESS-S-EEECCCTTCCE
T ss_pred             ceeecCCCCcccEEEeC-C-ceEEechhccc
Confidence            46899999999999964 3 45899998775

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.00  E-value=0.0057  Score=48.81  Aligned_cols=52  Identities=15%  Similarity=0.041  Sum_probs=30.3

Q ss_pred             CcEEEEEEeecccccccHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCCCeEEEEEeccCCC
Q psy238            6 GVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSG   71 (218)
Q Consensus         6 g~~vAvK~~~~~~~~~~~~~~~~~~~ei~~l~~l~-hp~iv~l~~~~~~~~~~~~~~~lv~e~~~~~   71 (218)
                      +..|.+++....  ..    .....+|..+++.+. +.-.+++++++..        .+|++|++|.
T Consensus        74 ~~~vllRi~g~~--~~----~idr~~E~~i~~~ls~~gl~Pkll~~~~~--------g~I~efi~g~  126 (395)
T d1nw1a_          74 PNKVLLRVYFNP--ET----ESHLVAESVIFTLLSERHLGPKLYGIFSG--------GRLEEYIPSR  126 (395)
T ss_dssp             CSEEEEEEECSC--CC----HHHHHHHHHHHHHHHHTTSSSCEEEEETT--------EEEECCCCEE
T ss_pred             CCcEEEEecCCc--ch----hhHHHHHHHHHHHHHhCCCCCeEEEEcCC--------ceEEEEeccc
Confidence            345666665411  11    123446777777774 3334577777642        6789998764

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.91  E-value=0.0014  Score=50.69  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             CCcccCCCCCCcEEEecCCcEEEeecCcccc
Q psy238          111 PPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT  141 (218)
Q Consensus       111 ~~iiH~dlkp~NiLl~~~~~~ki~dfg~~~~  141 (218)
                      .|+||+|+.++||+++.+...-|+||+.+..
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cccccCCcchhhhhcccccceeEeccccccc
Confidence            5799999999999999988889999998876