Psyllid ID: psy254

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
VDGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVKSYQLS
cccccccHHHHHHHHccHHHHHHcccccccccccccccEEEEcccccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccEEEEEcccccEEEEEEEcccEEEEEccccccccccccEEEEEccccccccccccEEEEEccEEEEEEEEEEcccccc
cccccccccHHHHccccHHHHHHccccccccccccccEEEEEcccccccHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccEEEccEccccccccEEccccEEEEEcccccccEccccEEEEccccHHHHcccccEEEEccccEEEEEEEEccccEcc
vdgyvppsqlRALAANTFVDHlcgldidnkssYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLnfshgsyeyhGQTIKNIRQAVENYSKRIGMPHALAIALdtkgpeirtgllqgggsaeveLVKGQTIRLTTDAAFaekgsatdlyvdytnitkvvkpgsrifvddGLISLVVKSIVKSYQLS
VDGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAafaekgsatdlyvdytnitkvvkpgsrifvddgliSLVVKSIVKSYQLS
VDGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVKSYQLS
*********LRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVKS****
*DGYV*PSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVKSYQLS
VDGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVKSYQLS
**GYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVKSYQ**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VDGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVKSYQLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query187 2.2.26 [Sep-21-2011]
O62619 533 Pyruvate kinase OS=Drosop yes N/A 0.930 0.326 0.614 8e-61
Q92122 527 Pyruvate kinase muscle is N/A N/A 0.946 0.335 0.593 3e-57
P52480 531 Pyruvate kinase isozymes yes N/A 0.946 0.333 0.559 1e-54
P11980 531 Pyruvate kinase isozymes yes N/A 0.946 0.333 0.559 2e-54
P00548 530 Pyruvate kinase muscle is yes N/A 0.989 0.349 0.535 1e-53
P11979 531 Pyruvate kinase isozyme M N/A N/A 0.946 0.333 0.548 1e-53
Q5NVN0 531 Pyruvate kinase isozyme M yes N/A 0.941 0.331 0.556 1e-53
P14618 531 Pyruvate kinase isozymes yes N/A 0.941 0.331 0.556 1e-53
P11974 531 Pyruvate kinase isozymes no N/A 0.941 0.331 0.545 4e-53
P30613 574 Pyruvate kinase isozymes no N/A 0.903 0.294 0.577 2e-52
>sp|O62619|KPYK_DROME Pyruvate kinase OS=Drosophila melanogaster GN=PyK PE=2 SV=2 Back     alignment and function desciption
 Score =  232 bits (592), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 139/174 (79%)

Query: 9   QLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNF 68
           Q  A  A+T ++H+C L  D+   +VRL+GI+CTIGPAS +V+MLEK++ TGMNIAR+NF
Sbjct: 20  QNMAAGADTQLEHMCRLQFDSPVPHVRLSGIVCTIGPASSSVEMLEKMMATGMNIARMNF 79

Query: 69  SHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVK 128
           SHGS+EYH  T+ N+RQAV+NYS ++G  H +AIALDTKGPEIRTGL+ G G+AE+EL K
Sbjct: 80  SHGSHEYHAATVANVRQAVKNYSAKLGYEHPVAIALDTKGPEIRTGLIGGSGTAEIELKK 139

Query: 129 GQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVK 182
           G+ I+LTT+  F EKGS   +YVDY NI  VVKPG+R+FVDDGLISL+V+ + K
Sbjct: 140 GEKIKLTTNKEFLEKGSLEIVYVDYENIVNVVKPGNRVFVDDGLISLIVREVGK 193

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 0
>sp|Q92122|KPYK_XENLA Pyruvate kinase muscle isozyme OS=Xenopus laevis GN=pkm PE=2 SV=1 Back     alignment and function description
>sp|P52480|KPYM_MOUSE Pyruvate kinase isozymes M1/M2 OS=Mus musculus GN=Pkm PE=1 SV=4 Back     alignment and function description
>sp|P11980|KPYM_RAT Pyruvate kinase isozymes M1/M2 OS=Rattus norvegicus GN=Pkm PE=1 SV=3 Back     alignment and function description
>sp|P00548|KPYK_CHICK Pyruvate kinase muscle isozyme OS=Gallus gallus GN=PKM PE=2 SV=2 Back     alignment and function description
>sp|P11979|KPYM_FELCA Pyruvate kinase isozyme M1/M2 OS=Felis catus GN=PKM PE=1 SV=2 Back     alignment and function description
>sp|Q5NVN0|KPYM_PONAB Pyruvate kinase isozyme M1/M2 OS=Pongo abelii GN=PKM PE=2 SV=3 Back     alignment and function description
>sp|P14618|KPYM_HUMAN Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=PKM PE=1 SV=4 Back     alignment and function description
>sp|P11974|KPYM_RABIT Pyruvate kinase isozymes M1/M2 OS=Oryctolagus cuniculus GN=PKM PE=1 SV=4 Back     alignment and function description
>sp|P30613|KPYR_HUMAN Pyruvate kinase isozymes R/L OS=Homo sapiens GN=PKLR PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
332375456 523 unknown [Dendroctonus ponderosae] 0.962 0.344 0.683 2e-66
91094451 536 PREDICTED: similar to pyruvate kinase is 0.941 0.328 0.687 5e-66
389609065 528 pyruvate kinase [Papilio xuthus] 0.930 0.329 0.660 4e-65
388327916 426 pyruvate kinase [Helicoverpa armigera] 0.930 0.408 0.660 7e-65
112982707 403 pyruvate kinase [Bombyx mori] gi|3837167 0.866 0.401 0.685 3e-63
347972245 518 AGAP004596-PA [Anopheles gambiae str. PE 0.887 0.320 0.686 6e-63
383847146 529 PREDICTED: pyruvate kinase-like [Megachi 0.909 0.321 0.676 1e-62
307177342 1079 Pyruvate kinase [Camponotus floridanus] 0.909 0.157 0.664 2e-62
328704551 567 PREDICTED: pyruvate kinase-like isoform 0.967 0.319 0.639 4e-62
307207885 619 Pyruvate kinase [Harpegnathos saltator] 0.909 0.274 0.658 4e-62
>gi|332375456|gb|AEE62869.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/180 (68%), Positives = 151/180 (83%)

Query: 5   VPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIA 64
           V P Q++A  +NT +DHLC LDI +++SYVRL+GIICTIGPAS    +LEK++E GMN+A
Sbjct: 5   VLPFQMQAAESNTQLDHLCALDIHSRASYVRLSGIICTIGPASKDPAVLEKMMEVGMNVA 64

Query: 65  RLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEV 124
           RLNFSHGS+EYH +TIKNIR+AV NYSK+IGM + LAIALDTKGPEIRTGLL+GGGSAE+
Sbjct: 65  RLNFSHGSHEYHAETIKNIREAVANYSKKIGMTYPLAIALDTKGPEIRTGLLEGGGSAEI 124

Query: 125 ELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVKSY 184
           EL KG TI+LTTD A+AEKG+   ++VDY NI KVVK G++I+VDDGLISLVV  I  S+
Sbjct: 125 ELKKGDTIKLTTDKAYAEKGNKDTVFVDYDNIQKVVKVGNKIYVDDGLISLVVSQIQGSF 184

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91094451|ref|XP_966698.1| PREDICTED: similar to pyruvate kinase isoform 1 [Tribolium castaneum] gi|270000746|gb|EEZ97193.1| hypothetical protein TcasGA2_TC004380 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|389609065|dbj|BAM18144.1| pyruvate kinase [Papilio xuthus] Back     alignment and taxonomy information
>gi|388327916|gb|AFK28501.1| pyruvate kinase [Helicoverpa armigera] Back     alignment and taxonomy information
>gi|112982707|ref|NP_001036906.1| pyruvate kinase [Bombyx mori] gi|38371675|dbj|BAD01636.1| pyruvate kinase [Bombyx mori] Back     alignment and taxonomy information
>gi|347972245|ref|XP_315228.5| AGAP004596-PA [Anopheles gambiae str. PEST] gi|333469340|gb|EAA10555.6| AGAP004596-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|383847146|ref|XP_003699216.1| PREDICTED: pyruvate kinase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307177342|gb|EFN66515.1| Pyruvate kinase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328704551|ref|XP_003242527.1| PREDICTED: pyruvate kinase-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307207885|gb|EFN85446.1| Pyruvate kinase [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
FB|FBgn0003178 533 PyK "Pyruvate kinase" [Drosoph 0.930 0.326 0.614 1.1e-55
MGI|MGI:97591 531 Pkm "pyruvate kinase, muscle" 0.935 0.329 0.565 4.6e-50
UNIPROTKB|A5D984 531 PKM2 "Pyruvate kinase" [Bos ta 0.935 0.329 0.565 7.4e-50
WB|WBGene00009126 913 pyk-1 [Caenorhabditis elegans 0.930 0.190 0.577 8e-50
RGD|3337 531 Pkm "pyruvate kinase, muscle" 0.935 0.329 0.565 9.5e-50
UNIPROTKB|F1MAC8 489 LOC100364062 "Pyruvate kinase" 0.935 0.357 0.565 9.5e-50
UNIPROTKB|F1NW43 532 PKM2 "Pyruvate kinase" [Gallus 0.983 0.345 0.538 3.2e-49
UNIPROTKB|F1P4U1 530 PKM2 "Pyruvate kinase" [Gallus 0.983 0.347 0.538 3.2e-49
UNIPROTKB|P00548 530 PKM "Pyruvate kinase muscle is 0.983 0.347 0.538 3.2e-49
UNIPROTKB|F1PHR2 547 PKM "Pyruvate kinase" [Canis l 0.935 0.319 0.56 4.1e-49
FB|FBgn0003178 PyK "Pyruvate kinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 107/174 (61%), Positives = 139/174 (79%)

Query:     9 QLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNF 68
             Q  A  A+T ++H+C L  D+   +VRL+GI+CTIGPAS +V+MLEK++ TGMNIAR+NF
Sbjct:    20 QNMAAGADTQLEHMCRLQFDSPVPHVRLSGIVCTIGPASSSVEMLEKMMATGMNIARMNF 79

Query:    69 SHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVK 128
             SHGS+EYH  T+ N+RQAV+NYS ++G  H +AIALDTKGPEIRTGL+ G G+AE+EL K
Sbjct:    80 SHGSHEYHAATVANVRQAVKNYSAKLGYEHPVAIALDTKGPEIRTGLIGGSGTAEIELKK 139

Query:   129 GQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVK 182
             G+ I+LTT+  F EKGS   +YVDY NI  VVKPG+R+FVDDGLISL+V+ + K
Sbjct:   140 GEKIKLTTNKEFLEKGSLEIVYVDYENIVNVVKPGNRVFVDDGLISLIVREVGK 193
GO:0004743 "pyruvate kinase activity" evidence=ISS;IMP;NAS
GO:0016310 "phosphorylation" evidence=ISS
GO:0006096 "glycolysis" evidence=IEA;NAS
GO:0005829 "cytosol" evidence=IDA
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0030955 "potassium ion binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
MGI|MGI:97591 Pkm "pyruvate kinase, muscle" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A5D984 PKM2 "Pyruvate kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00009126 pyk-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|3337 Pkm "pyruvate kinase, muscle" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MAC8 LOC100364062 "Pyruvate kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW43 PKM2 "Pyruvate kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4U1 PKM2 "Pyruvate kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P00548 PKM "Pyruvate kinase muscle isozyme" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHR2 PKM "Pyruvate kinase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P14618KPYM_HUMAN2, ., 7, ., 1, ., 4, 00.55680.94110.3314yesN/A
P11980KPYM_RAT2, ., 7, ., 1, ., 4, 00.55930.94650.3333yesN/A
Q5NVN0KPYM_PONAB2, ., 7, ., 1, ., 4, 00.55680.94110.3314yesN/A
O62619KPYK_DROME2, ., 7, ., 1, ., 4, 00.61490.93040.3264yesN/A
Q10208KPYK_SCHPO2, ., 7, ., 1, ., 4, 00.52440.72720.2671yesN/A
P52480KPYM_MOUSE2, ., 7, ., 1, ., 4, 00.55930.94650.3333yesN/A
P00548KPYK_CHICK2, ., 7, ., 1, ., 4, 00.53510.98930.3490yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.400.737
3rd Layer2.7.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
pfam00224 348 pfam00224, PK, Pyruvate kinase, barrel domain 1e-60
cd00288 480 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): La 3e-60
TIGR01064 473 TIGR01064, pyruv_kin, pyruvate kinase 7e-54
COG0469 477 COG0469, PykF, Pyruvate kinase [Carbohydrate trans 2e-48
PRK05826 465 PRK05826, PRK05826, pyruvate kinase; Provisional 3e-45
PRK09206 470 PRK09206, PRK09206, pyruvate kinase; Provisional 5e-45
PLN02461 511 PLN02461, PLN02461, Probable pyruvate kinase 1e-44
PRK06354 590 PRK06354, PRK06354, pyruvate kinase; Provisional 5e-41
PTZ00066 513 PTZ00066, PTZ00066, pyruvate kinase; Provisional 3e-37
PTZ00300 454 PTZ00300, PTZ00300, pyruvate kinase; Provisional 1e-35
PRK06247 476 PRK06247, PRK06247, pyruvate kinase; Provisional 2e-32
PLN02765 526 PLN02765, PLN02765, pyruvate kinase 1e-26
PLN02623 581 PLN02623, PLN02623, pyruvate kinase 1e-23
PRK06739 352 PRK06739, PRK06739, pyruvate kinase; Validated 7e-23
PLN02762 509 PLN02762, PLN02762, pyruvate kinase complex alpha 1e-18
PRK08187 493 PRK08187, PRK08187, pyruvate kinase; Validated 6e-12
PRK14725 608 PRK14725, PRK14725, pyruvate kinase; Provisional 8e-08
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain Back     alignment and domain information 
 Score =  191 bits (488), Expect = 1e-60
 Identities = 74/148 (50%), Positives = 96/148 (64%), Gaps = 7/148 (4%)

Query: 35  RLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRI 94
           R T I+CTIGPA+ +V+ LEK+I+ GMN+AR+NFSHGS+EYH   I N+R+A E     +
Sbjct: 2   RRTKIVCTIGPATDSVENLEKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAEEKLGGLV 61

Query: 95  GMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYT 154
                 AIALDTKGPEIRTGL +  G  ++EL  G    ++TD A+   G    +YVDY 
Sbjct: 62  ------AIALDTKGPEIRTGLFK-DGKKDIELKAGDKFLVSTDPAYKGAGDKEKIYVDYK 114

Query: 155 NITKVVKPGSRIFVDDGLISLVVKSIVK 182
           N+TK V PG  I VDDG++SL V     
Sbjct: 115 NLTKDVSPGGIILVDDGVLSLKVLEKDD 142

This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains. Length = 348
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase Back     alignment and domain information
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase Back     alignment and domain information
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase Back     alignment and domain information
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase Back     alignment and domain information
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated Back     alignment and domain information
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit Back     alignment and domain information
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated Back     alignment and domain information
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 187
PF00224 348 PK: Pyruvate kinase, barrel domain; InterPro: IPR0 100.0
PRK08187 493 pyruvate kinase; Validated 100.0
PLN02762 509 pyruvate kinase complex alpha subunit 100.0
PTZ00066 513 pyruvate kinase; Provisional 100.0
COG0469 477 PykF Pyruvate kinase [Carbohydrate transport and m 100.0
PLN02765 526 pyruvate kinase 100.0
PRK09206 470 pyruvate kinase; Provisional 100.0
PLN02623 581 pyruvate kinase 100.0
PRK06247 476 pyruvate kinase; Provisional 100.0
cd00288 480 Pyruvate_Kinase Pyruvate kinase (PK): Large allost 100.0
PRK05826 465 pyruvate kinase; Provisional 100.0
PLN02461 511 Probable pyruvate kinase 100.0
PRK06354 590 pyruvate kinase; Provisional 100.0
PRK14725 608 pyruvate kinase; Provisional 100.0
TIGR01064 473 pyruv_kin pyruvate kinase. This enzyme is a homote 100.0
PRK06739 352 pyruvate kinase; Validated 100.0
KOG2323|consensus 501 100.0
PTZ00300 454 pyruvate kinase; Provisional 99.97
PF00478 352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 94.09
cd00381325 IMPDH IMPDH: The catalytic domain of the inosine m 91.45
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 90.61
TIGR01302450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 90.53
PRK05096346 guanosine 5'-monophosphate oxidoreductase; Provisi 90.14
TIGR01305343 GMP_reduct_1 guanosine monophosphate reductase, eu 90.0
PLN02274 505 inosine-5'-monophosphate dehydrogenase 88.47
PTZ00314 495 inosine-5'-monophosphate dehydrogenase; Provisiona 87.89
PRK06843 404 inosine 5-monophosphate dehydrogenase; Validated 86.7
TIGR01306321 GMP_reduct_2 guanosine monophosphate reductase, ba 85.93
PRK10737196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 83.05
PF01136233 Peptidase_U32: Peptidase family U32 This is family 82.96
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 Back     alignment and domain information 
Probab=100.00  E-value=2.1e-45  Score=321.18  Aligned_cols=144  Identities=49%  Similarity=0.781  Sum_probs=130.1

Q ss_pred             CCCceEEEecCCCCCCHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEeeCCCCeeEe
Q psy254           34 VRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRT  113 (187)
Q Consensus        34 ~r~TkIi~TiGPas~~~~~i~~li~aGm~v~RiN~sHg~~e~~~~~i~~ir~a~~~~~~~~~~~~~v~I~~Dl~GPkIRt  113 (187)
                      +|+||||||||||+++++.|++|+++||||||||||||++++|+++++++|+++++++      ++++||+||+||||||
T Consensus         1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~------~~i~IllDl~GPkIRt   74 (348)
T PF00224_consen    1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELG------KPIAILLDLKGPKIRT   74 (348)
T ss_dssp             -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTT------TS-EEEEEE-TS-EBB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccC------CceEEEeccCCCccee
Confidence            6999999999999999999999999999999999999999999999999999999998      7899999999999999


Q ss_pred             eecCCCCcccEEeeeCCEEEEeeCCCcccCCCcCEEeeCcchhhhcCCCCCEEEEeCCeEEEEEEEEeCCe
Q psy254          114 GLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSIVKSY  184 (187)
Q Consensus       114 G~~~~~~~~~i~l~~G~~v~lt~~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~  184 (187)
                      |.+.++ ..++.|++|++|+|+.+..+...++++.|++||++|+++|++||+||+|||+|.|+|.++.++.
T Consensus        75 g~l~~g-~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~  144 (348)
T PF00224_consen   75 GRLKDG-KKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDS  144 (348)
T ss_dssp             -BBTTS-SSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTE
T ss_pred             eeeccc-cccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCc
Confidence            999874 2579999999999999988877778899999999999999999999999999999999999887

7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
>PRK08187 pyruvate kinase; Validated Back     alignment and domain information
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information
>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02765 pyruvate kinase Back     alignment and domain information
>PRK09206 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02623 pyruvate kinase Back     alignment and domain information
>PRK06247 pyruvate kinase; Provisional Back     alignment and domain information
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02461 Probable pyruvate kinase Back     alignment and domain information
>PRK06354 pyruvate kinase; Provisional Back     alignment and domain information
>PRK14725 pyruvate kinase; Provisional Back     alignment and domain information
>TIGR01064 pyruv_kin pyruvate kinase Back     alignment and domain information
>PRK06739 pyruvate kinase; Validated Back     alignment and domain information
>KOG2323|consensus Back     alignment and domain information
>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
4b2d_D 548 Human Pkm2 With L-serine And Fbp Bound Length = 548 7e-55
1pkm_A 530 The Refined Three-Dimensional Structure Of Cat Musc 1e-54
3srf_C 551 Human M1 Pyruvate Kinase Length = 551 1e-54
1t5a_A 567 Human Pyruvate Kinase M2 Length = 567 1e-54
3bjt_A 530 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 1e-54
3g2g_A 533 S437y Mutant Of Human Muscle Pyruvate Kinase, Isofo 1e-54
3gqy_A 550 Activator-Bound Structure Of Human Pyruvate Kinase 1e-54
3u2z_A 533 Activator-Bound Structure Of Human Pyruvate Kinase 1e-54
3srd_A 551 Human M2 Pyruvate Kinase In Complex With Fructose 1 2e-54
1zjh_A 548 Structure Of Human Muscle Pyruvate Kinase (Pkm2) Le 2e-54
3bjf_A 518 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 3e-54
4g1n_A 518 Pkm2 In Complex With An Activator Length = 518 3e-54
1aqf_A 530 Pyruvate Kinase From Rabbit Muscle With Mg, K, And 4e-54
1f3w_A 530 Recombinant Rabbit Muscle Pyruvate Kinase Length = 4e-54
1f3x_A 530 S402p Mutant Of Rabbit Muscle Pyruvate Kinase Lengt 5e-54
2g50_A 530 The Location Of The Allosteric Amino Acid Binding S 1e-53
3n25_A 531 The Structure Of Muscle Pyruvate Kinase In Complex 1e-53
4ima_A 543 The Structure Of C436m-hlpyk In Complex With Citrat 2e-53
2vgf_A 528 Human Erythrocyte Pyruvate Kinase: T384m Mutant Len 2e-53
2vgi_A 528 Human Erythrocyte Pyruvate Kinase: R486w Mutant Len 2e-53
4ip7_A 543 Structure Of The S12d Variant Of Human Liver Pyruva 2e-53
2vgg_A 528 Human Erythrocyte Pyruvate Kinase: R479h Mutant Len 2e-53
2vgb_A 528 Human Erythrocyte Pyruvate Kinase Length = 528 2e-53
1pkn_A 530 Structure Of Rabbit Muscle Pyruvate Kinase Complexe 7e-53
3pp7_A 498 Crystal Structure Of Leishmania Mexicana Pyruvate K 5e-37
1pkl_A 499 The Structure Of Leishmania Pyruvate Kinase Length 6e-37
3e0v_A 539 Crystal Structure Of Pyruvate Kinase From Leishmani 6e-37
3qv9_A 499 Crystal Structure Of Trypanosoma Cruzi Pyruvate Kin 6e-34
3ma8_A 534 Crystal Structure Of Cgd1_2040, A Pyruvate Kinase F 1e-27
4drs_A 526 Crystal Structure Of Cryptosporidium Parvum Pyruvat 1e-27
1a3w_A 500 Pyruvate Kinase From Saccharomyces Cerevisiae Compl 6e-27
1e0u_A 470 Structure R271l Mutant Of E. Coli Pyruvate Kinase L 3e-26
1pky_A 470 Pyruvate Kinase From E. Coli In The T-State Length 3e-26
1e0t_A 470 R292d Mutant Of E. Coli Pyruvate Kinase Length = 47 3e-26
2e28_A 587 Crystal Structure Analysis Of Pyruvate Kinase From 4e-26
3t05_A 606 Crystal Structure Of S. Aureus Pyruvate Kinase Leng 7e-26
3eoe_A 511 Crystal Structure Of Pyruvate Kinase From Toxoplasm 9e-26
3khd_A 520 Crystal Structure Of Pff1300w. Length = 520 7e-24
>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound Length = 548 Back     alignment and structure 
Iteration: 1

 Score =  209 bits (532), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 99/176 (56%), Positives = 135/176 (76%)
Query: 3   GYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMN 62
            ++   QL A  A+TF++H+C LDID+     R TGIICTIGPAS +V+ L+++I++GMN
Sbjct: 28  AFIQTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIKSGMN 87
Query: 63  IARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSA 122
           +ARLNFSHG++EYH +TIKN+R A E+++    +   +A+ALDTKGPEIRTGL++G G+A
Sbjct: 88  VARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTA 147
Query: 123 EVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVK 178
           EVEL KG T++LT D A+ EK     L++DY NI KVV+ GS+I+VDDGLISL VK
Sbjct: 148 EVELKKGATLKLTLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVK 203
>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1) Pyruvate Kinase, At A Resolution Of 2.6 Angstroms Length = 530 Back     alignment and structure
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase Length = 551 Back     alignment and structure
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2 Length = 567 Back     alignment and structure
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 530 Back     alignment and structure
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2 Length = 533 Back     alignment and structure
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 550 Back     alignment and structure
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 533 Back     alignment and structure
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6 Bisphosphate And Oxalate. Length = 551 Back     alignment and structure
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2) Length = 548 Back     alignment and structure
>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 518 Back     alignment and structure
>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator Length = 518 Back     alignment and structure
>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L- Phospholactate Length = 530 Back     alignment and structure
>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of Muscle Pyruvate Kinase. Length = 530 Back     alignment and structure
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With Proline, Pyruvate, And Mn2+ Length = 531 Back     alignment and structure
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With Citrate/mn/atp/fru-1,6-bp Length = 543 Back     alignment and structure
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant Length = 528 Back     alignment and structure
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant Length = 528 Back     alignment and structure
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate Kinase In Complex With Citrate And Fbp. Length = 543 Back     alignment and structure
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant Length = 528 Back     alignment and structure
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase Length = 528 Back     alignment and structure
>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With Mn2+, K+, And Pyruvate Length = 530 Back     alignment and structure
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase In Complex With The Drug Suramin, An Inhibitor Of Glycolysis. Length = 498 Back     alignment and structure
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase Length = 499 Back     alignment and structure
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania Mexicana In Complex With Sulphate Ions Length = 539 Back     alignment and structure
>pdb|3QV9|A Chain A, Crystal Structure Of Trypanosoma Cruzi Pyruvate Kinase(Tcpyk)in Complex With Ponceau S. Length = 499 Back     alignment and structure
>pdb|3MA8|A Chain A, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From Cryptosporidium Parvum Length = 534 Back     alignment and structure
>pdb|4DRS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Pyruvate Kinase Length = 526 Back     alignment and structure
>pdb|1A3W|A Chain A, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed With Fbp, Pg, Mn2+ And K+ Length = 500 Back     alignment and structure
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State Length = 470 Back     alignment and structure
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|2E28|A Chain A, Crystal Structure Analysis Of Pyruvate Kinase From Bacillus Stearothermophilus Length = 587 Back     alignment and structure
>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase Length = 606 Back     alignment and structure
>pdb|3EOE|A Chain A, Crystal Structure Of Pyruvate Kinase From Toxoplasma Gondii, 55.M00007 Length = 511 Back     alignment and structure
>pdb|3KHD|A Chain A, Crystal Structure Of Pff1300w. Length = 520 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
3gr4_A 550 Pyruvate kinase isozymes M1/M2; activator, acetyla 2e-82
3hqn_D 499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 2e-73
1a3w_A 500 Pyruvate kinase; allosteric regulation, tranferase 1e-72
3khd_A 520 Pyruvate kinase; malaria, structural genomics, str 2e-72
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 5e-69
3gg8_A 511 Pyruvate kinase; malaria, genomics, proteomics, gl 3e-68
3ma8_A 534 Pyruvate kinase; parasitology, pyruvate kiase, gly 9e-68
1e0t_A 470 Pyruvate kinase, PK; phosphotransferase, glycolysi 2e-66
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 1e-59
3qtg_A 461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 3e-49
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ... Length = 550 Back     alignment and structure
 Score =  253 bits (647), Expect = 2e-82
 Identities = 98/179 (54%), Positives = 135/179 (75%)

Query: 2   DGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGM 61
             ++   QL A  A+TF++H+C LDID+     R TGIICTIGPAS +V+ L+++I++GM
Sbjct: 29  TAFIQTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIKSGM 88

Query: 62  NIARLNFSHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGS 121
           N+ARLNFSHG++EYH +TIKN+R A E+++    +   +A+ALDTKGPEIRTGL++G G+
Sbjct: 89  NVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGT 148

Query: 122 AEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSI 180
           AEVEL KG T+++T D A+ EK     L++DY NI KVV+ GS+I+VDDGLISL VK  
Sbjct: 149 AEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQK 207
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Length = 499 Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Length = 500 Back     alignment and structure
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Length = 520 Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* Length = 606 Back     alignment and structure
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Length = 511 Back     alignment and structure
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum} Length = 534 Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Length = 470 Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Length = 587 Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Length = 461 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
3gr4_A 550 Pyruvate kinase isozymes M1/M2; activator, acetyla 100.0
3hqn_D 499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 100.0
1a3w_A 500 Pyruvate kinase; allosteric regulation, tranferase 100.0
4drs_A 526 Pyruvate kinase; glycolysis, allosteric EN transfe 100.0
3khd_A 520 Pyruvate kinase; malaria, structural genomics, str 100.0
3gg8_A 511 Pyruvate kinase; malaria, genomics, proteomics, gl 100.0
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 100.0
1e0t_A 470 Pyruvate kinase, PK; phosphotransferase, glycolysi 100.0
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 100.0
3qtg_A 461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 100.0
4fxs_A 496 Inosine-5'-monophosphate dehydrogenase; structural 90.54
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 88.97
4fo4_A 366 Inosine 5'-monophosphate dehydrogenase; structural 88.2
1at0_A145 17-hedgehog; developmental signaling molecule, cho 87.3
1aj0_A 282 DHPS, dihydropteroate synthase; antibiotic, resist 86.91
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 86.72
1eep_A 404 Inosine 5'-monophosphate dehydrogenase; alpha-beta 86.54
3usb_A 511 Inosine-5'-monophosphate dehydrogenase; structural 86.48
3khj_A 361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 86.01
3ndz_A 345 Endoglucanase D; cellotriose, xylanase, carbohydra 85.91
1jcn_A 514 Inosine monophosphate dehydrogenase I; IMPD, IMPDH 85.14
1tvn_A 293 Cellulase, endoglucanase G; glycoside hydrolase, C 85.07
4avf_A 490 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 84.88
3icg_A 515 Endoglucanase D; cellulase, xylanase, carbohydrate 84.68
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 83.99
4af0_A 556 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 83.51
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 83.33
3l55_A 353 B-1,4-endoglucanase/cellulase; putative beta-1,4-e 83.25
1egz_A 291 Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL 83.02
1edg_A 380 Endoglucanase A; family A, cellulases, xylanases, 82.75
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 80.69
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ... Back     alignment and structure
Probab=100.00  E-value=4.8e-55  Score=396.48  Aligned_cols=185  Identities=53%  Similarity=0.861  Sum_probs=170.0

Q ss_pred             CCCCCchhhhhhhhccHHHhhcCCCCCCCCCCCCCceEEEecCCCCCCHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHH
Q psy254            2 DGYVPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIK   81 (187)
Q Consensus         2 ~~~~~~~q~~~~~~~~~l~~~~~l~i~~~~~~~r~TkIi~TiGPas~~~~~i~~li~aGm~v~RiN~sHg~~e~~~~~i~   81 (187)
                      +.|+|+||+.+++++|+|+|+|.|++.++|..+|+|||||||||||+++++|++|+++||||||||||||++++|+++|+
T Consensus        29 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~rkTKIV~TiGPas~~~e~l~~Li~aGmnv~RlNfSHG~~e~h~~~i~  108 (550)
T 3gr4_A           29 TAFIQTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIK  108 (550)
T ss_dssp             ---CCSTTHHHHTCSSHHHHHHTCCTTSCCCSCCCSEEEEECSTTTCSHHHHHHHHHHTCCEEEEETTSSCHHHHHHHHH
T ss_pred             ccccchhhhcccccccHHHHhhccCCCCCCccCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcceeEEEeeCCCCeeEeeecCCCCcccEEeeeCCEEEEeeCCCcccCCCcCEEeeCcchhhhcCC
Q psy254           82 NIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVKGQTIRLTTDAAFAEKGSATDLYVDYTNITKVVK  161 (187)
Q Consensus        82 ~ir~a~~~~~~~~~~~~~v~I~~Dl~GPkIRtG~~~~~~~~~i~l~~G~~v~lt~~~~~~~~~~~~~i~v~~~~l~~~v~  161 (187)
                      +||+++++++++.+..+||+||+||+|||||||.++++...++.|++|++|+|+++..+...|+.+.++++|++|+++|+
T Consensus       109 ~iR~a~~~~~~~~~~~~~vaIllDlkGPkIR~G~~~~~~~~~v~L~~G~~~~lt~~~~~~~~g~~~~i~v~y~~l~~~v~  188 (550)
T 3gr4_A          109 NVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVE  188 (550)
T ss_dssp             HHHHHHHTTTTCTTTCCCCEEEEECCCSCCBBCCBTTBTTCCEEECTTCEEEEECCGGGTTCBCSSEEEBSCTTHHHHCC
T ss_pred             HHHHHHHhhccccccCceEEEEEeCCCCEEEEEecCCCCCCCeEEcCCCEEEEEeCCcccCCCCccEEecchHHHHhhcC
Confidence            99999999655555559999999999999999999864335799999999999998776667899999999999999999


Q ss_pred             CCCEEEEeCCeEEEEEEEEeCCeee
Q psy254          162 PGSRIFVDDGLISLVVKSIVKSYQL  186 (187)
Q Consensus       162 ~Gd~IlidDG~i~l~V~~v~~~~i~  186 (187)
                      +||+||+|||+|.|+|.+++++.+.
T Consensus       189 ~Gd~IlidDG~i~l~V~~v~~~~v~  213 (550)
T 3gr4_A          189 VGSKIYVDDGLISLQVKQKGADFLV  213 (550)
T ss_dssp             TTCEEEETTTTEEEEEEEECSSEEE
T ss_pred             CCCEEEEeCCEEEEEEEEEeCCEEE
Confidence            9999999999999999999888753
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Back     alignment and structure
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A* Back     alignment and structure
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Back     alignment and structure
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1 Back     alignment and structure
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* Back     alignment and structure
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Back     alignment and structure
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* Back     alignment and structure
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 Back     alignment and structure
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 187
d2g50a2282 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-t 3e-35
d1pkla2258 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter 2e-29
d1a3xa2265 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter 2e-26
d1e0ta2246 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-ter 1e-24
d2g50a1102 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit 4e-22
d2vgba1102 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human ( 8e-19
d1a3xa1101 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's 4e-17
d1pkla199 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishman 2e-16
d1e0ta198 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escheric 1e-13
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  122 bits (308), Expect = 3e-35
 Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 8/182 (4%)

Query: 9   QLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNF 68
           QL A  A+TF++H C LDID+     R TGIICTIGPAS +V+ L+++I++GMN+AR+NF
Sbjct: 5   QLHAAMADTFLEHKCRLDIDSAPITARNTGIICTIGPASRSVETLKEMIKSGMNVARMNF 64

Query: 69  SHGSYEYHGQTIKNIRQAVENYSKRIGMPHALAIALDTKGPEIRTGLLQGGGSAEVELVK 128
           SHG++EYH +TIKN+R A E+++    +   +A+ALDTKGP +    +Q       + V 
Sbjct: 65  SHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKDIQDLKFGVEQDVD 124

Query: 129 GQTIRLTTDAA--------FAEKGSATDLYVDYTNITKVVKPGSRIFVDDGLISLVVKSI 180
                    AA          EKG    +     N   V +    +   DG++       
Sbjct: 125 MVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLG 184

Query: 181 VK 182
           ++
Sbjct: 185 IE 186
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 102 Back     information, alignment and structure
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 101 Back     information, alignment and structure
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 5665]} Length = 99 Back     information, alignment and structure
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
d2g50a2282 Pyruvate kinase, N-terminal domain {Rabbit (Orycto 100.0
d1pkla2258 Pyruvate kinase, N-terminal domain {Leishmania mex 99.96
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 99.95
d1e0ta2246 Pyruvate kinase, N-terminal domain {Escherichia co 99.93
d2vgba1102 Pyruvate kinase (PK) {Human (Homo sapiens) [TaxId: 99.79
d2g50a1102 Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculu 99.79
d1a3xa1101 Pyruvate kinase (PK) {Baker's yeast (Saccharomyces 99.74
d1e0ta198 Pyruvate kinase (PK) {Escherichia coli [TaxId: 562 99.73
d1pkla199 Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 99.71
d2cu0a1 368 Inosine monophosphate dehydrogenase (IMPDH) {Pyroc 80.58
d1zfja1 365 Inosine monophosphate dehydrogenase (IMPDH) {Strep 80.42
d1tzza1247 Hypothetical protein Bll6730 {Bradyrhizobium japon 80.39
d1tvna1 293 Endoglucanase Cel5a {Pseudoalteromonas haloplankti 80.28
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=3.1e-34  Score=241.05  Aligned_cols=113  Identities=50%  Similarity=0.814  Sum_probs=109.6

Q ss_pred             CCchhhhhhhhccHHHhhcCCCCCCCCCCCCCceEEEecCCCCCCHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHH
Q psy254            5 VPPSQLRALAANTFVDHLCGLDIDNKSSYVRLTGIICTIGPASVAVDMLEKIIETGMNIARLNFSHGSYEYHGQTIKNIR   84 (187)
Q Consensus         5 ~~~~q~~~~~~~~~l~~~~~l~i~~~~~~~r~TkIi~TiGPas~~~~~i~~li~aGm~v~RiN~sHg~~e~~~~~i~~ir   84 (187)
                      ||.||+++.+++|+|+|+|+|++.++|...|+|||||||||||++++.|++|+++||||||||||||++++|+++|+++|
T Consensus         1 ~~~~q~~~~~~~~~l~~~~~~~i~~~p~~~RkTKIIaTiGPas~~~e~l~~Li~aGvnv~RiN~SHg~~e~h~~~i~~iR   80 (282)
T d2g50a2           1 IQTQQLHAAMADTFLEHKCRLDIDSAPITARNTGIICTIGPASRSVETLKEMIKSGMNVARMNFSHGTHEYHAETIKNVR   80 (282)
T ss_dssp             CCSTTHHHHTCSSHHHHHHTCCTTSCCCSCCCSEEEEECSTTTCSHHHHHHHHHHTCCEEEEETTSSCHHHHHHHHHHHH
T ss_pred             CchhhhhhhhhhhHHHHHHhcCcCCCCcccCCCcEEEEeCCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCcceeEEEeeCCCCeeEeeecC
Q psy254           85 QAVENYSKRIGMPHALAIALDTKGPEIRTGLLQ  117 (187)
Q Consensus        85 ~a~~~~~~~~~~~~~v~I~~Dl~GPkIRtG~~~  117 (187)
                      ++++.++.+...+++++|+.|.+||.++.+.+.
T Consensus        81 ~~~~~~~~~~il~~~~~I~~d~~~~~l~~~di~  113 (282)
T d2g50a2          81 TATESFASDPILYRPVAVALDTKGPAVSEKDIQ  113 (282)
T ss_dssp             HHHHTTTTCTTTCCCCEEEEECCCCSSCHHHHH
T ss_pred             HHHHHhCCCceeccccccccccccccccchHHH
Confidence            999999998889999999999999999988664
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} Back     information, alignment and structure