Psyllid ID: psy2584

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
MLTPFQDPTLASECRDVEFLLYGGNNRLYTVHGDHLIKLWTLPLYDPTQECRLYRVFVAEGTVRNIHVVKRHPVNRLSTPGSLAFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRDPDNGRKGFPINHGATSPETLLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLN
cccccccccccccccccEEEEEcccccEEEEcccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHccccccEEEEEEccccHHHHccccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHcccccccccccccccEEEEEEEEccEEEEEcccccccEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHcHHHHHHHHHHccc
ccccccccccccHcccHEEEEEccccEEEEEccccEEEEEccccccccccEEEEEEEEEcccEEEEEEEccccHHHcccHHHHHHHHHcccccccEEEEEccccHHHHHHccccEEEEEEEEccccHHHHHHHHHHHHccccccEEEEEHHHHcccccccEEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEcccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHccccccccccccccEEEEEEEEcccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccEEcccEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHHHcccc
mltpfqdptlasecrdvefllyggnnrlytvhgdhliklwtlplydptqecrLYRVFVAEgtvrnihvvkrhpvnrlstpgSLAFLVALgvpskwqivdvygtdpdmlaivpqPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNlnnvkledgklKSFLDEakdlsperrgklldenqsISDVHKVIAqegqtappedrepvpyHFVALVHKEgalyeldgrkgfpinhgatspetLLADATQVAKKYMqrdpdngrkgfpinhgatspetlLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLN
mltpfqdptlaseCRDVEFLLYGGNNRLYTVHGDHLIKLWTLPLYDPTQECRLYRVFVAEGTvrnihvvkrhpvnrlstPGSLAFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKlldenqsisDVHKVIAQEgqtappedrepVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRDPDNGRKGFPINHGATSPETLLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLN
MLTPFQDPTLASECRDVEFLLYGGNNRLYTVHGDHLIKLWTLPLYDPTQECRLYRVFVAEGTVRNIHVVKRHPVNRLSTPGSLAFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTekyeehckeqekeieekGQTISSELFFMKQFVHNACGTIALIHSYeehckeqekeieekGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRDPDNGRKGFPINHGATSPETLLADATQYeehckeqekeieekGQTISSELFFMKQFVHNACGTIALIHSVANNLN
***********SECRDVEFLLYGGNNRLYTVHGDHLIKLWTLPLYDPTQECRLYRVFVAEGTVRNIHVVKRHPVNRLSTPGSLAFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHC************TISSELFFMKQFVHNACGTIALIHSYEEHC************TISSELFFMKQFVHNACGTIALIHSVANNLNNVKLED*************************************************VPYHFVALVHKEGALYELDGRKGFPINHG*******************************************************************SSELFFMKQFVHNACGTIALIHSV*****
***P***PTLASECRDVEFLLYGGNNRLYTVHGDHLIKLWTLPLYDPTQECRLYRVFVAEGTVRNIHVVKRHPVNRLSTPGSLAFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEH*************TISSELFFMKQFVHNACGTIALIHSYEEHCK*************SSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKLLDENQSISDVH******************PYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRDPDNGRKGFPINHGATSPETLLADATQYEEHCKE*EKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANN**
MLTPFQDPTLASECRDVEFLLYGGNNRLYTVHGDHLIKLWTLPLYDPTQECRLYRVFVAEGTVRNIHVVKRHPVNRLSTPGSLAFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYE************KGQTISSELFFMKQFVHNACGTIALIHSYEEH**********KGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRDPDNGRKGFPINHGATSPETLLADATQY*************KGQTISSELFFMKQFVHNACGTIALIHSVANNLN
*LTPFQDPTLASECRDVEFLLYGGNNRLYTVHGDHLIKLWTLPLYDPTQECRLYRVFVAEGTVRNIHVVKRHPVNRLSTPGSLAFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRDPDNGRKGFPINHGATSPETLLADATQYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNL*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLTPFQDPTLASECRDVEFLLYGGNNRLYTVHGDHLIKLWTLPLYDPTQECRLYRVFVAEGTVRNIHVVKRHPVNRLSTPGSLAFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCxxxxxxxxxxxxxxxxxxxxxISSELFFMKQFVHNACGTIALxxxxxxxxxxxxxxxxxxxxxISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRDPDNGRKGFPINHGATSPETLLADxxxxxxxxxxxxxxxxxxxxxISSELFFMKQFVHNACGTIALIHSVANNLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query397 2.2.26 [Sep-21-2011]
Q2TBG8230 Ubiquitin carboxyl-termin yes N/A 0.508 0.878 0.448 1e-52
P15374230 Ubiquitin carboxyl-termin yes N/A 0.508 0.878 0.448 2e-52
Q9JKB1230 Ubiquitin carboxyl-termin yes N/A 0.508 0.878 0.448 2e-52
Q06AB3230 Ubiquitin carboxyl-termin yes N/A 0.508 0.878 0.444 6e-52
Q91Y78230 Ubiquitin carboxyl-termin yes N/A 0.508 0.878 0.444 2e-51
P58321233 Ubiquitin carboxyl-termin yes N/A 0.508 0.866 0.435 7e-49
P35122227 Ubiquitin carboxyl-termin yes N/A 0.521 0.911 0.428 5e-48
Q54T48255 Probable ubiquitin carbox yes N/A 0.511 0.796 0.402 2e-45
P23356252 Ubiquitin carboxyl-termin no N/A 0.551 0.869 0.387 2e-39
O01391214 Ubiquitin carboxyl-termin N/A N/A 0.476 0.883 0.373 2e-37
>sp|Q2TBG8|UCHL3_BOVIN Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 146/245 (59%), Gaps = 43/245 (17%)

Query: 85  FLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQ 144
           FL  LG+   WQ VDVYG DP++L++VP+PV A+++LFP TEKYE               
Sbjct: 19  FLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYE--------------- 63

Query: 145 TISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACG 204
                +F                        E+E++I+ +GQ ++S ++FMKQ + NACG
Sbjct: 64  -----VF----------------------RTEEEEKIKSQGQDVTSSVYFMKQTISNACG 96

Query: 205 TIALIHSVANNLNNVKLEDGK-LKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQ 263
           TI LIH++ANN + +  E G  LK FL+E+  +SPE R + L+   +I   H+  A EGQ
Sbjct: 97  TIGLIHAIANNKDKMHFESGSTLKKFLEESASMSPEERARYLENYDAIRVTHETSAHEGQ 156

Query: 264 TAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRD 323
           T  P   E V  HF+ALVH +G LYELDGRK FPINHG TS ETLL DA +V KK+M+RD
Sbjct: 157 TEAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERD 216

Query: 324 PDNGR 328
           PD  R
Sbjct: 217 PDELR 221
Deubiquitinating enzyme (DUB) that controls levels of cellular ubiquitin through processing of ubiquitin precursors and ubiquitinated proteins. Thiol protease that recognizes and hydrolyzes a peptide bond at the C-terminal glycine of either ubiquitin or NEDD8. Has a 10-fold preference for Arg and Lys at position P3". Deubiquitinates ENAC in apical compartments, thereby regulating apical membrane recycling. Indirectly increases the phosphorylation of IGFIR, AKT and FOXO1 and promotes insulin-signaling and insulin-induced adipogenesis. Required for stress-response retinal, skeletal muscle and germ cell maintenance. May be involved in working memory. Can hydrolyze UBB(+1), a mutated form of ubiquitin which is not effectively degraded by the proteasome.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|P15374|UCHL3_HUMAN Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Homo sapiens GN=UCHL3 PE=1 SV=1 Back     alignment and function description
>sp|Q9JKB1|UCHL3_MOUSE Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Mus musculus GN=Uchl3 PE=1 SV=2 Back     alignment and function description
>sp|Q06AB3|UCHL3_PIG Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Sus scrofa GN=UCHL3 PE=2 SV=1 Back     alignment and function description
>sp|Q91Y78|UCHL3_RAT Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Rattus norvegicus GN=Uchl3 PE=1 SV=1 Back     alignment and function description
>sp|P58321|UCHL4_MOUSE Ubiquitin carboxyl-terminal hydrolase isozyme L4 OS=Mus musculus GN=Uchl4 PE=1 SV=1 Back     alignment and function description
>sp|P35122|UCHL_DROME Ubiquitin carboxyl-terminal hydrolase OS=Drosophila melanogaster GN=Uch PE=2 SV=2 Back     alignment and function description
>sp|Q54T48|UCHL_DICDI Probable ubiquitin carboxyl-terminal hydrolase OS=Dictyostelium discoideum GN=uch1 PE=3 SV=1 Back     alignment and function description
>sp|P23356|UCHL1_BOVIN Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Bos taurus GN=UCHL1 PE=1 SV=2 Back     alignment and function description
>sp|O01391|UCHL_APLCA Ubiquitin carboxyl-terminal hydrolase OS=Aplysia californica GN=UCH PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
242003874225 ubiquitin carboxyl-terminal hydrolase, p 0.501 0.884 0.495 6e-61
389609829230 ubiquitin carboxy-terminal hydrolase [Pa 0.508 0.878 0.463 8e-58
312597590230 ubiquitin carboxy-terminal hydrolase CG4 0.508 0.878 0.459 1e-56
357628820216 hypothetical protein KGM_17369 [Danaus p 0.508 0.935 0.459 2e-55
380022944234 PREDICTED: ubiquitin carboxyl-terminal h 0.506 0.858 0.489 6e-55
48103883234 PREDICTED: ubiquitin carboxyl-terminal h 0.506 0.858 0.477 9e-55
340716880234 PREDICTED: ubiquitin carboxyl-terminal h 0.506 0.858 0.477 1e-54
350420643232 PREDICTED: ubiquitin carboxyl-terminal h 0.501 0.857 0.489 4e-54
332376991232 unknown [Dendroctonus ponderosae] 0.501 0.857 0.455 3e-53
149898901228 ubiquitin C-terminal hydrolase UCHL1 [Tr 0.503 0.877 0.450 2e-52
>gi|242003874|ref|XP_002422894.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus corporis] gi|212505776|gb|EEB10156.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 120/242 (49%), Positives = 158/242 (65%), Gaps = 43/242 (17%)

Query: 85  FLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQ 144
           FL  LGVP K ++VDV+G DP++LAI+PQPVL L++LFPC +KYE               
Sbjct: 16  FLYRLGVPQKIKVVDVFGLDPELLAIIPQPVLGLLLLFPCDDKYE--------------- 60

Query: 145 TISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACG 204
                                      E+  +QE+E+++KGQ +S++L+FMKQFVHNACG
Sbjct: 61  ---------------------------EYKNKQEQELKKKGQVVSNKLYFMKQFVHNACG 93

Query: 205 TIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQT 264
           TIALIHS+AN + N+ L DG LK FLD+ + LSP++RG+ L +  +I D H  +A EGQT
Sbjct: 94  TIALIHSIAN-IENLDLGDGFLKQFLDDTRSLSPDQRGEELQKCNAIIDTHSEVANEGQT 152

Query: 265 APPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRDP 324
           APP++R PV YHFVA V KEG LYELDGRK FPIN G +SP+T L DA    + YM+R+P
Sbjct: 153 APPDNRIPVLYHFVAFVQKEGNLYELDGRKAFPINLGPSSPDTFLQDAALACRNYMKRNP 212

Query: 325 DN 326
           +N
Sbjct: 213 EN 214

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|389609829|dbj|BAM18526.1| ubiquitin carboxy-terminal hydrolase [Papilio xuthus] Back     alignment and taxonomy information
>gi|312597590|gb|ADQ89804.1| ubiquitin carboxy-terminal hydrolase CG4265 [Bombyx mori] Back     alignment and taxonomy information
>gi|357628820|gb|EHJ77995.1| hypothetical protein KGM_17369 [Danaus plexippus] Back     alignment and taxonomy information
>gi|380022944|ref|XP_003695293.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase-like [Apis florea] Back     alignment and taxonomy information
>gi|48103883|ref|XP_392902.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase [Apis mellifera] Back     alignment and taxonomy information
>gi|340716880|ref|XP_003396919.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350420643|ref|XP_003492576.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332376991|gb|AEE63635.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|149898901|gb|ABR27951.1| ubiquitin C-terminal hydrolase UCHL1 [Triatoma infestans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
FB|FBgn0010288227 Uch "Ubiquitin carboxy-termina 0.342 0.599 0.550 1.4e-54
UNIPROTKB|P23356252 UCHL1 "Ubiquitin carboxyl-term 0.342 0.539 0.464 4e-39
MGI|MGI:1355274230 Uchl3 "ubiquitin carboxyl-term 0.362 0.626 0.551 1.6e-38
UNIPROTKB|Q2TBG8230 UCHL3 "Ubiquitin carboxyl-term 0.362 0.626 0.544 3.4e-38
UNIPROTKB|F1RHF0212 UCHL3 "Ubiquitin carboxyl-term 0.362 0.679 0.544 3.4e-38
UNIPROTKB|P15374230 UCHL3 "Ubiquitin carboxyl-term 0.362 0.626 0.544 4.3e-38
UNIPROTKB|L7N069218 UCHL3 "Uncharacterized protein 0.355 0.646 0.549 5.5e-38
UNIPROTKB|Q06AB3230 UCHL3 "Ubiquitin carboxyl-term 0.362 0.626 0.537 7e-38
RGD|621131230 Uchl3-ps1 "ubiquitin carboxyl- 0.362 0.626 0.544 1.1e-37
RGD|1561196228 Uchl3 "ubiquitin carboxyl-term 0.362 0.631 0.537 2.4e-37
FB|FBgn0010288 Uch "Ubiquitin carboxy-terminal hydrolase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 398 (145.2 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 76/138 (55%), Positives = 101/138 (73%)

Query:   191 ELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGKLKSFLDEAKDLSPERRGKLLDENQS 250
             +LF+M+QF HNACGT+ALIHSVANN   V ++ G LK FL++   LSPE RG+ L++++ 
Sbjct:    81 DLFYMRQFTHNACGTVALIHSVANN-KEVDIDRGVLKDFLEKTASLSPEERGRALEKDEK 139

Query:   251 ISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLA 310
              +  H+ +AQEGQT    + E V +HF+ALV+KEG LYELDGRK FPI HG TS ET + 
Sbjct:   140 FTADHEALAQEGQTNAA-NHEKVIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETFVK 198

Query:   311 DATQVAKKYMQRDPDNGR 328
             DA +V K++M RDP+  R
Sbjct:   199 DAAKVCKEFMARDPNEVR 216
GO:0016579 "protein deubiquitination" evidence=IDA
GO:0004221 "ubiquitin thiolesterase activity" evidence=NAS;IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IDA
UNIPROTKB|P23356 UCHL1 "Ubiquitin carboxyl-terminal hydrolase isozyme L1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1355274 Uchl3 "ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBG8 UCHL3 "Ubiquitin carboxyl-terminal hydrolase isozyme L3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHF0 UCHL3 "Ubiquitin carboxyl-terminal hydrolase isozyme L3" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P15374 UCHL3 "Ubiquitin carboxyl-terminal hydrolase isozyme L3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|L7N069 UCHL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q06AB3 UCHL3 "Ubiquitin carboxyl-terminal hydrolase isozyme L3" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|621131 Uchl3-ps1 "ubiquitin carboxyl-terminal esterase L3, pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1561196 Uchl3 "ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.691
3rd Layer3.4.19.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
cd09616222 cd09616, Peptidase_C12_UCH_L1_L3, Cysteine peptida 4e-93
pfam01088211 pfam01088, Peptidase_C12, Ubiquitin carboxyl-termi 4e-78
cd09617219 cd09617, Peptidase_C12_UCH37_BAP1, Cysteine peptid 3e-20
cd09616 222 cd09616, Peptidase_C12_UCH_L1_L3, Cysteine peptida 3e-17
pfam01088 211 pfam01088, Peptidase_C12, Ubiquitin carboxyl-termi 7e-14
cd02255222 cd02255, Peptidase_C12, Cysteine peptidase C12 con 4e-09
>gnl|CDD|187737 cd09616, Peptidase_C12_UCH_L1_L3, Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families L1 and L3 Back     alignment and domain information 
 Score =  278 bits (713), Expect = 4e-93
 Identities = 115/243 (47%), Positives = 147/243 (60%), Gaps = 43/243 (17%)

Query: 85  FLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQ 144
           FL  LGV   W+ VDVYG DP++LA VP+PVLA+++LFP T+ YEE  KE+E+EI+EKGQ
Sbjct: 14  FLHKLGVSPGWEFVDVYGLDPELLAFVPRPVLAVLLLFPITKAYEEFRKEEEEEIKEKGQ 73

Query: 145 TISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACG 204
                                      E                S  ++FMKQ + NACG
Sbjct: 74  ---------------------------EV---------------SESVYFMKQTIGNACG 91

Query: 205 TIALIHSVANNLNNVK-LEDGKLKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQ 263
           TIALIH+VANN + +  LE   LK FL+EAK LSPE R KLL++++++   H   A EGQ
Sbjct: 92  TIALIHAVANNEDRINILEGSFLKKFLEEAKGLSPEERAKLLEKSEALEKAHAAAATEGQ 151

Query: 264 TAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRD 323
           T  P   E V  HF+A V K+G LYELDGRK  PINHG TS ETLL DA +V +K+++R+
Sbjct: 152 TEAPSADEKVNLHFIAFVKKDGHLYELDGRKPGPINHGPTSEETLLKDAAKVCRKFIERE 211

Query: 324 PDN 326
           PD 
Sbjct: 212 PDE 214

This ubiquitin C-terminal hydrolase (UCH) family includes UCH-L1 and UCH-L3, the two members sharing around 53% sequence identity as well as conserved catalytic residues. Both enzymes hydrolyze carboxyl terminal esters and amides of ubiquitin (Ub). UCH-L1, in dimeric form, has additional enzymatic activity as a ubiquitin ligase. It is highly abundant in the brain, constituting up to 2% of total protein, and is expressed exclusively in neurons and testes. Abnormal expression of UCH-L1 has been shown to correlate with several forms of cancer, including several primary lung tumors, lung tumor cell lines, and colorectal cancers. Mutations in the UCH-L1 gene have been linked to susceptibility to and protection from Parkinson's disease (PD); dysfunction of the hydrolase activity can lead to an accumulation of alpha-synuclein, which is linked to Parkinson's disease (PD), while accumulation of neurofibrillary tangles is linked to Alzheimer's disease (AD). UCH-L3 hydrolyzes isopeptide bonds at the C-terminal glycine of either Ub or Nedd8, a ubiquitin-like protein. It can also interact with Lys48-linked Ub dimers to protect them from degradation while inhibiting its hydrolase activity at the same time. Unlike UCH-L1, neither dimerization nor ligase activity have been observed for UCH-L3. It has been shown that levels of Nedd8 and the apoptotic protein p53 and Bax are elevated in UCH-L3 knockout mice upon cryptorchid injury, possibly contributing to profound germ cell loss via apoptosis. Length = 222
>gnl|CDD|216294 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, family 1 Back     alignment and domain information
>gnl|CDD|187738 cd09617, Peptidase_C12_UCH37_BAP1, Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1 Back     alignment and domain information
>gnl|CDD|187737 cd09616, Peptidase_C12_UCH_L1_L3, Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families L1 and L3 Back     alignment and domain information
>gnl|CDD|216294 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, family 1 Back     alignment and domain information
>gnl|CDD|187736 cd02255, Peptidase_C12, Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and BAP1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 397
PF01088214 Peptidase_C12: Ubiquitin carboxyl-terminal hydrola 100.0
KOG1415|consensus222 100.0
KOG2778|consensus328 100.0
KOG1415|consensus 222 99.76
PF01088 214 Peptidase_C12: Ubiquitin carboxyl-terminal hydrola 99.67
KOG2778|consensus 328 92.04
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information 
Probab=100.00  E-value=5.1e-70  Score=512.51  Aligned_cols=207  Identities=47%  Similarity=0.781  Sum_probs=179.7

Q ss_pred             cccCCChhHH-HHHHHcCCCCccEEEEeecCCh-hHhhccCCCceEEEEEecCChhhHHHHHHHhhhhhhhccccchhhh
Q psy2584          74 VNRLSTPGSL-AFLVALGVPSKWQIVDVYGTDP-DMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTISSELF  151 (397)
Q Consensus        74 i~~ESnPeVF-~ll~~LGv~~~~~f~DVysLD~-dlLa~iP~PV~alIfLFP~~~~~e~~~~~~~~~~~~~~~~i~~~~~  151 (397)
                      ++|||||+|| +|+++||| ++++|+||||||+ ++|+|+|+|||||||||||++++++.+..++....           
T Consensus         3 ~pLESnP~vfn~l~~~lGv-~~~~f~Dv~sld~~~lL~~ip~Pv~alI~lfp~~~~~~~~~~~~~~~~~-----------   70 (214)
T PF01088_consen    3 IPLESNPEVFNELLRKLGV-SGVQFEDVYSLDDPELLAMIPRPVYALIFLFPWTEEYEERRAEEDAKIE-----------   70 (214)
T ss_dssp             --EESSHHHHHHHHHHTTB-TSEEEEEESTSSHHHHHTTSSSSEEEEEEEEE--HHHHHHHHHHHHHHC-----------
T ss_pred             ccccCCHHHHHHHHHHcCC-ceeEEEEcccccchHhhhhcCccceeEEEEEecchhhhhhhcccccccc-----------
Confidence            4459999999 99999999 5999999999998 78999999999999999999999888766543221           


Q ss_pred             hhhhhhccccccchhhhhhhhhhhhhHHHHhhhccCCCCceEEEeecccchhHHHHHHHhhccCCCccccCCc-hHHHHH
Q psy2584         152 FMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDG-KLKSFL  230 (397)
Q Consensus       152 ~~~~~~~~~~g~~~~~h~y~~~~ke~~~~~~~~~~~~~~~v~f~KQtI~NACGTiALLHaLlN~~~~i~l~~~-~L~~f~  230 (397)
                                                     ..++..++++|||||||+||||||||||+|+|+++.+.+..| .|++|+
T Consensus        71 -------------------------------~~~~~~~~~v~f~kQti~NACgt~AlLh~l~N~~~~~~i~~gs~L~~f~  119 (214)
T PF01088_consen   71 -------------------------------EKGQDIPENVFFAKQTIGNACGTIALLHALLNNPDRIEIEPGSILDQFK  119 (214)
T ss_dssp             -------------------------------CHSCTCGTTS-EES-SSBTGHHHHHHHHHHHTCCCTTCBBTTSHHHHHH
T ss_pred             -------------------------------ccccCCCCCceEeeecCCchhhHHHHHHHHhcccccccccCCchHHHHH
Confidence                                           123456789999999999999999999999999876556545 599999


Q ss_pred             HHhcCCChHHHHhhhccChHHHHHHHhhcccCCCCCCC--CCCCCCceEEEEEeeCCeEEEecCCCCCceeecCCCCCch
Q psy2584         231 DEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPE--DREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETL  308 (397)
Q Consensus       231 ~~t~~lsP~~Rg~~L~ns~~l~~aHns~A~~g~T~~p~--~~~~v~~HFVafV~~~G~LyELDG~k~gPI~~G~~~~d~~  308 (397)
                      ++|++|+|++||++|+++++|+++|+++|++|+|+.|.  .+++++|||||||+++|+||||||||+|||+||++++++|
T Consensus       120 ~~t~~~~p~~Rg~~l~~~~~l~~aH~s~A~~g~t~~~~~~~~~~~~~HFI~fV~~~G~LyELDG~k~~Pi~~G~~~~~~~  199 (214)
T PF01088_consen  120 EFTKDLSPEERGKALENSKELRKAHNSFARQGQTEAPDDEADDEVDFHFIAFVPVDGHLYELDGRKSGPIDHGPCSDEDW  199 (214)
T ss_dssp             HHHTTSTHHHHHHHHHTHHHHHHHHHHHHCHCSSTS-H--TTSCGCEEEEEEEEETTEEEEEETTSSS-EEEEE-BTTSH
T ss_pred             HHHhcCCHHHHHHHHhCcHHHHHHHHHHhccCCcCCCccccCCCCCccEEEEEeECCeEEEcCCCCCCCeEcCcCCCccH
Confidence            99999999999999999999999999999999999876  5789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q psy2584         309 LADATQVAKKYMQRD  323 (397)
Q Consensus       309 l~~a~~vIq~~m~~~  323 (397)
                      +++|+++||+||+++
T Consensus       200 l~~a~~vik~~m~~y  214 (214)
T PF01088_consen  200 LSDARPVIKERMERY  214 (214)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
>KOG1415|consensus Back     alignment and domain information
>KOG2778|consensus Back     alignment and domain information
>KOG1415|consensus Back     alignment and domain information
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2778|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
1xd3_A230 Crystal Structure Of Uchl3-Ubvme Complex Length = 2 1e-49
1xd3_A 230 Crystal Structure Of Uchl3-Ubvme Complex Length = 2 3e-06
2len_A231 Solution Structure Of Uchl1 S18y Variant Length = 2 9e-38
2len_A 231 Solution Structure Of Uchl1 S18y Variant Length = 2 1e-05
3ifw_A228 Crystal Structure Of The S18y Variant Of Ubiquitin 1e-37
3ifw_A 228 Crystal Structure Of The S18y Variant Of Ubiquitin 1e-05
2etl_A228 Crystal Structure Of Ubiquitin Carboxy-terminal Hyd 1e-37
2etl_A 228 Crystal Structure Of Ubiquitin Carboxy-terminal Hyd 1e-05
3irt_A228 Crystal Structure Of The I93m Mutant Of Ubiquitin C 3e-37
3irt_A 228 Crystal Structure Of The I93m Mutant Of Ubiquitin C 2e-05
2wdt_A232 Crystal Structure Of Plasmodium Falciparum Uchl3 In 1e-22
1cmx_A235 Structural Basis For The Specificity Of Ubiquitin C 2e-09
3ris_A245 Crystal Structure Of The Catalytic Domain Of Uchl5, 1e-08
3ihr_A328 Crystal Structure Of Uch37 Length = 328 4e-08
3a7s_A228 Catalytic Domain Of Uch37 Length = 228 2e-07
3tb3_A229 Crystal Structure Of The Uch Domain Of Uch-L5 With 2e-07
3rii_A233 Crystal Structure Of The Catalytic Domain Of Uchl5, 2e-07
>pdb|1XD3|A Chain A, Crystal Structure Of Uchl3-Ubvme Complex Length = 230 Back     alignment and structure 
Iteration: 1

 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/245 (42%), Positives = 133/245 (54%), Gaps = 43/245 (17%)
Query: 85  FLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTXXXXXXXXXXXXXXXXXGQ 144
           FL  LG+   WQ VDVYG DP++L++VP+PV A+++LFP T                   
Sbjct: 19  FLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPIT------------------- 59
Query: 145 TISSELFFMKQFVHNACGTIALIHSYXXXXXXXXXXXXXXGQTISSELFFMKQFVHNACG 204
                                    Y              GQ ++S ++FMKQ + NACG
Sbjct: 60  -----------------------EKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACG 96
Query: 205 TIALIHSVANNLNNVKLEDGK-LKSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQ 263
           TI LIH++ANN + +  E G  LK FL+E+  +SPE R + L+   +I   H+  A EGQ
Sbjct: 97  TIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQ 156
Query: 264 TAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQVAKKYMQRD 323
           T  P   E V  HF+ALVH +G LYELDGRK FPINHG TS ETLL DA +V KK+M+RD
Sbjct: 157 TEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERD 216
Query: 324 PDNGR 328
           PD  R
Sbjct: 217 PDELR 221
>pdb|1XD3|A Chain A, Crystal Structure Of Uchl3-Ubvme Complex Length = 230 Back     alignment and structure
>pdb|2LEN|A Chain A, Solution Structure Of Uchl1 S18y Variant Length = 231 Back     alignment and structure
>pdb|2LEN|A Chain A, Solution Structure Of Uchl1 S18y Variant Length = 231 Back     alignment and structure
>pdb|3IFW|A Chain A, Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy T Hydrolase L1 Bound To Ubiquitin Vinylmethylester Length = 228 Back     alignment and structure
>pdb|3IFW|A Chain A, Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy T Hydrolase L1 Bound To Ubiquitin Vinylmethylester Length = 228 Back     alignment and structure
>pdb|2ETL|A Chain A, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase L1 (uch-l1) Length = 228 Back     alignment and structure
>pdb|2ETL|A Chain A, Crystal Structure Of Ubiquitin Carboxy-terminal Hydrolase L1 (uch-l1) Length = 228 Back     alignment and structure
>pdb|3IRT|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy-Te Hydrolase L1 Length = 228 Back     alignment and structure
>pdb|3IRT|A Chain A, Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy-Te Hydrolase L1 Length = 228 Back     alignment and structure
>pdb|2WDT|A Chain A, Crystal Structure Of Plasmodium Falciparum Uchl3 In Complex With The Suicide Inhibitor Ubvme Length = 232 Back     alignment and structure
>pdb|1CMX|A Chain A, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 235 Back     alignment and structure
>pdb|3RIS|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A Proteasome- Associated Human Deubiquitinating Enzyme, Reveals An Unproductive Form Of The Enzyme Length = 245 Back     alignment and structure
>pdb|3IHR|A Chain A, Crystal Structure Of Uch37 Length = 328 Back     alignment and structure
>pdb|3A7S|A Chain A, Catalytic Domain Of Uch37 Length = 228 Back     alignment and structure
>pdb|3TB3|A Chain A, Crystal Structure Of The Uch Domain Of Uch-L5 With 6 Residues Deleted Length = 229 Back     alignment and structure
>pdb|3RII|A Chain A, Crystal Structure Of The Catalytic Domain Of Uchl5, A Proteasome- Associated Human Deubiquitinating Enzyme, Reveals An Unproductive Form Of The Enzyme Length = 233 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
1xd3_A230 Ubiquitin carboxyl-terminal esterase L3; enzyme-li 5e-59
1xd3_A 230 Ubiquitin carboxyl-terminal esterase L3; enzyme-li 1e-09
4dm9_A228 Ubiquitin carboxyl-terminal hydrolase isozyme L1; 8e-57
4dm9_A 228 Ubiquitin carboxyl-terminal hydrolase isozyme L1; 4e-08
2wdt_A232 Ubiquitin carboxyl-terminal hydrolase L3; hydrolas 2e-50
2wdt_A 232 Ubiquitin carboxyl-terminal hydrolase L3; hydrolas 9e-08
3rii_A233 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 1e-46
3rii_A 233 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 1e-04
1cmx_A235 Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase 3e-43
1cmx_A 235 Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase 1e-06
3ihr_A328 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 2e-42
3ihr_A 328 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A* Length = 230 Back     alignment and structure
 Score =  191 bits (485), Expect = 5e-59
 Identities = 110/253 (43%), Positives = 146/253 (57%), Gaps = 44/253 (17%)

Query: 78  STPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQE 136
           + P     FL  LG+   WQ VDVYG DP++L++VP+PV A+++LFP TEKYE    E+E
Sbjct: 11  ANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEE 70

Query: 137 KEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMK 196
           ++I+ +GQ ++S ++FMKQ + NACGTI LIH+                           
Sbjct: 71  EKIKSQGQDVTSSVYFMKQTISNACGTIGLIHA--------------------------- 103

Query: 197 QFVHNACGTIALIHSVANNLNNVKLEDGK-LKSFLDEAKDLSPERRGKLLDENQSISDVH 255
                          +ANN + +  E G  LK FL+E+  +SPE R + L+   +I   H
Sbjct: 104 ---------------IANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTH 148

Query: 256 KVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQV 315
           +  A EGQT  P   E V  HF+ALVH +G LYELDGRK FPINHG TS ETLL DA +V
Sbjct: 149 ETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEV 208

Query: 316 AKKYMQRDPDNGR 328
            KK+M+RDPD  R
Sbjct: 209 CKKFMERDPDELR 221
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A* Length = 230 Back     alignment and structure
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A Length = 228 Back     alignment and structure
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A Length = 228 Back     alignment and structure
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A Length = 232 Back     alignment and structure
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A Length = 232 Back     alignment and structure
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A Length = 233 Back     alignment and structure
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A Length = 233 Back     alignment and structure
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6 Length = 235 Back     alignment and structure
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6 Length = 235 Back     alignment and structure
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin hydrolase, proteasome, INO80; 2.95A {Homo sapiens} Length = 328 Back     alignment and structure
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin hydrolase, proteasome, INO80; 2.95A {Homo sapiens} Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
1xd3_A230 Ubiquitin carboxyl-terminal esterase L3; enzyme-li 100.0
4dm9_A228 Ubiquitin carboxyl-terminal hydrolase isozyme L1; 100.0
2wdt_A232 Ubiquitin carboxyl-terminal hydrolase L3; hydrolas 100.0
1cmx_A235 Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase 100.0
3rii_A233 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 100.0
3ihr_A328 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 100.0
4dm9_A 228 Ubiquitin carboxyl-terminal hydrolase isozyme L1; 99.69
1xd3_A 230 Ubiquitin carboxyl-terminal esterase L3; enzyme-li 99.68
2wdt_A 232 Ubiquitin carboxyl-terminal hydrolase L3; hydrolas 99.56
1cmx_A 235 Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase 99.55
3rii_A 233 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 99.36
3ihr_A 328 Ubiquitin carboxyl-terminal hydrolase isozyme L5; 99.29
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A* Back     alignment and structure
Probab=100.00  E-value=5.2e-75  Score=550.82  Aligned_cols=221  Identities=50%  Similarity=0.853  Sum_probs=201.9

Q ss_pred             ecccccccCCChhHH-HHHHHcCCCCccEEEEeecCChhHhhccCCCceEEEEEecCChhhHHHHHHHhhhhhhhccccc
Q psy2584          69 VKRHPVNRLSTPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTIS  147 (397)
Q Consensus        69 ~~~~~i~~ESnPeVF-~ll~~LGv~~~~~f~DVysLD~dlLa~iP~PV~alIfLFP~~~~~e~~~~~~~~~~~~~~~~i~  147 (397)
                      +.|+++  ||||+|| +|+++|||+++|+|+||||||+|+|++||+|||||||||||+++|++.|..+++++.       
T Consensus         4 ~~w~pl--ESnP~Vft~l~~~lGv~~~~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~-------   74 (230)
T 1xd3_A            4 QRWLPL--EANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIK-------   74 (230)
T ss_dssp             CBCCCC--BCCHHHHHHHHHHTTBCTTEEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHH-------
T ss_pred             Cccccc--cCCHHHHHHHHHHcCCCceEEEEEeccCCHHHHhhCCCCceEEEEEEECChhhhhhhhhhhcccc-------
Confidence            457666  9999999 999999999669999999999999999999999999999999999988776543321       


Q ss_pred             hhhhhhhhhhccccccchhhhhhhhhhhhhHHHHhhhccCCCCceEEEeecccchhHHHHHHHhhccCCCccccCCc-hH
Q psy2584         148 SELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDG-KL  226 (397)
Q Consensus       148 ~~~~~~~~~~~~~~g~~~~~h~y~~~~ke~~~~~~~~~~~~~~~v~f~KQtI~NACGTiALLHaLlN~~~~i~l~~~-~L  226 (397)
                                                         ..++..+++|||+||||+||||||||||+|+|+++.+.|.+| .|
T Consensus        75 -----------------------------------~~~~~~~~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L  119 (230)
T 1xd3_A           75 -----------------------------------SQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTL  119 (230)
T ss_dssp             -----------------------------------HHCCCCCTTCCCCCCCSBTCHHHHHHHHHHHTTGGGCCBCTTCHH
T ss_pred             -----------------------------------cccCCCCcCcEEeehhccccHHHHHHHHHHHcCcCCcccCCCchH
Confidence                                               123456789999999999999999999999999877888555 59


Q ss_pred             HHHHHHhcCCChHHHHhhhccChHHHHHHHhhcccCCCCCCCCCCCCCceEEEEEeeCCeEEEecCCCCCceeecCCCCC
Q psy2584         227 KSFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPE  306 (397)
Q Consensus       227 ~~f~~~t~~lsP~~Rg~~L~ns~~l~~aHns~A~~g~T~~p~~~~~v~~HFVafV~~~G~LyELDG~k~gPI~~G~~~~d  306 (397)
                      ++|+++|++|+|++||++|+|++.|+++||++|++|+|++|+.+++++|||||||++||+||||||||+|||+||+++++
T Consensus       120 ~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~~p~~~~~~~~HFI~fV~~~G~LyELDG~k~gPi~~G~~~~~  199 (230)
T 1xd3_A          120 KKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDE  199 (230)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTCHHHHHHHHHHHTCSSSCCCCTTSCCCEEEEEEEEETTEEEEECTTSSSCEEEEECCTT
T ss_pred             HHHHHHccCCCHHHHHHHhcCcHHHHHHHHHHhccCCCCCCCCCCCcCeEEEEEEeeCCEEEEccCCCCCCeecCCCCcH
Confidence            99999999999999999999999999999999999999988878899999999999999999999999999999999989


Q ss_pred             chHHHHHHHHHHHHhcCCCCceeeeec
Q psy2584         307 TLLADATQVAKKYMQRDPDNGRKGFPI  333 (397)
Q Consensus       307 ~~l~~a~~vIq~~m~~~~~~vrFslpi  333 (397)
                      +|+++|+++||+||+++++++|||+..
T Consensus       200 ~~l~~a~~vi~~~~~~~~~~i~FslmA  226 (230)
T 1xd3_A          200 TLLEDAIEVCKKFMERDPDELRFNAIA  226 (230)
T ss_dssp             THHHHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred             hHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence            999999999999999999999999864
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A Back     alignment and structure
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A Back     alignment and structure
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6 Back     alignment and structure
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A Back     alignment and structure
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens} Back     alignment and structure
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A Back     alignment and structure
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A* Back     alignment and structure
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A Back     alignment and structure
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6 Back     alignment and structure
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A Back     alignment and structure
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 397
d1xd3a_229 d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase 7e-68
d1xd3a_ 229 d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase 9e-11
d2etla1223 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydr 1e-63
d2etla1 223 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydr 2e-09
d1cmxa_229 d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-49
d1cmxa_ 229 d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase 9e-07
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]} Length = 229 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase UCH-L
domain: Ubiquitin carboxyl-terminal hydrolase UCH-l3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  212 bits (541), Expect = 7e-68
 Identities = 110/253 (43%), Positives = 146/253 (57%), Gaps = 44/253 (17%)

Query: 78  STPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQE 136
           + P     FL  LG+   WQ VDVYG DP++L++VP+PV A+++LFP TEKYE    E+E
Sbjct: 10  ANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEE 69

Query: 137 KEIEEKGQTISSELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMK 196
           ++I+ +GQ ++S ++FMKQ + NACGTI LIH+                           
Sbjct: 70  EKIKSQGQDVTSSVYFMKQTISNACGTIGLIHA--------------------------- 102

Query: 197 QFVHNACGTIALIHSVANNLNNVKLEDGK-LKSFLDEAKDLSPERRGKLLDENQSISDVH 255
                          +ANN + +  E G  LK FL+E+  +SPE R + L+   +I   H
Sbjct: 103 ---------------IANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTH 147

Query: 256 KVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPETLLADATQV 315
           +  A EGQT  P   E V  HF+ALVH +G LYELDGRK FPINHG TS ETLL DA +V
Sbjct: 148 ETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEV 207

Query: 316 AKKYMQRDPDNGR 328
            KK+M+RDPD  R
Sbjct: 208 CKKFMERDPDELR 220
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]} Length = 229 Back     information, alignment and structure
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]} Length = 223 Back     information, alignment and structure
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]} Length = 223 Back     information, alignment and structure
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 229 Back     information, alignment and structure
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
d1xd3a_229 Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Huma 100.0
d2etla1223 Ubiquitin carboxyl-terminal hydrolase isozyme l1 { 100.0
d1cmxa_229 Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synt 100.0
d1xd3a_ 229 Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Huma 99.66
d2etla1 223 Ubiquitin carboxyl-terminal hydrolase isozyme l1 { 99.64
d1cmxa_ 229 Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synt 99.48
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase UCH-L
domain: Ubiquitin carboxyl-terminal hydrolase UCH-l3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-74  Score=543.12  Aligned_cols=220  Identities=50%  Similarity=0.859  Sum_probs=202.6

Q ss_pred             cccccccCCChhHH-HHHHHcCCCCccEEEEeecCChhHhhccCCCceEEEEEecCChhhHHHHHHHhhhhhhhccccch
Q psy2584          70 KRHPVNRLSTPGSL-AFLVALGVPSKWQIVDVYGTDPDMLAIVPQPVLALIMLFPCTEKYEEHCKEQEKEIEEKGQTISS  148 (397)
Q Consensus        70 ~~~~i~~ESnPeVF-~ll~~LGv~~~~~f~DVysLD~dlLa~iP~PV~alIfLFP~~~~~e~~~~~~~~~~~~~~~~i~~  148 (397)
                      +|+++  ||||+|| +|+++|||+++++|+||||||+|+|+|||+|||||||||||+++|++.+..++..+.        
T Consensus         4 ~W~pL--ESnP~vft~~~~~lGv~~~~~f~Dvysld~d~L~~ip~Pv~avI~Lfp~~~~~e~~~~~~~~~~~--------   73 (229)
T d1xd3a_           4 RWLPL--EANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIK--------   73 (229)
T ss_dssp             BCCCC--BCCHHHHHHHHHHTTBCTTEEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHH--------
T ss_pred             eeeee--cCCHHHHHHHHHHhCCCCCCEEEEeccCCHHHHhhcCCCcEEEEEEEECCchhhhhhcccccccc--------
Confidence            45555  9999999 999999998899999999999999999999999999999999999988876653321        


Q ss_pred             hhhhhhhhhccccccchhhhhhhhhhhhhHHHHhhhccCCCCceEEEeecccchhHHHHHHHhhccCCCccccCCch-HH
Q psy2584         149 ELFFMKQFVHNACGTIALIHSYEEHCKEQEKEIEEKGQTISSELFFMKQFVHNACGTIALIHSVANNLNNVKLEDGK-LK  227 (397)
Q Consensus       149 ~~~~~~~~~~~~~g~~~~~h~y~~~~ke~~~~~~~~~~~~~~~v~f~KQtI~NACGTiALLHaLlN~~~~i~l~~~~-L~  227 (397)
                                                        ..++..+++|||+||||+||||||||||+|+|+++.+.+.+|+ |+
T Consensus        74 ----------------------------------~~~~~~~~~v~f~kQti~NACgT~Allh~l~N~~~~~~i~~gs~L~  119 (229)
T d1xd3a_          74 ----------------------------------SQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK  119 (229)
T ss_dssp             ----------------------------------HHCCCCCTTCCCCCCCSBTCHHHHHHHHHHHTTGGGCCBCTTCHHH
T ss_pred             ----------------------------------cccCCCCccceehhhhhhhhhHHHHHHHHHhcCccccccCCcHHHH
Confidence                                              1345667899999999999999999999999998766676565 99


Q ss_pred             HHHHHhcCCChHHHHhhhccChHHHHHHHhhcccCCCCCCCCCCCCCceEEEEEeeCCeEEEecCCCCCceeecCCCCCc
Q psy2584         228 SFLDEAKDLSPERRGKLLDENQSISDVHKVIAQEGQTAPPEDREPVPYHFVALVHKEGALYELDGRKGFPINHGATSPET  307 (397)
Q Consensus       228 ~f~~~t~~lsP~~Rg~~L~ns~~l~~aHns~A~~g~T~~p~~~~~v~~HFVafV~~~G~LyELDG~k~gPI~~G~~~~d~  307 (397)
                      +|+++|++|+|++||++|++++.|+++|+++|++|+|++|+.+++++|||||||++||+||||||||+|||+||++++++
T Consensus       120 ~f~~~t~~~~p~eRg~~l~~~~~l~~aH~s~A~~g~t~~p~~~~~~~~HFI~fV~~~G~lyELDG~k~~Pi~hG~~~~~~  199 (229)
T d1xd3a_         120 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDET  199 (229)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTCHHHHHHHHHHHTCSSSCCCCTTSCCCEEEEEEEEETTEEEEECTTSSSCEEEEECCTTT
T ss_pred             HHHHHcCCCCHHHHHHHhhcCHHHHHHHHHhccccCCCCCCcccccceeEEEEEeeCCEEEEccCCCCCCcccCCCCchh
Confidence            99999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCceeeeec
Q psy2584         308 LLADATQVAKKYMQRDPDNGRKGFPI  333 (397)
Q Consensus       308 ~l~~a~~vIq~~m~~~~~~vrFslpi  333 (397)
                      |+++|+++||+||++++++++||+..
T Consensus       200 ~l~~a~~vi~~~~~~~~~~~~FsllA  225 (229)
T d1xd3a_         200 LLEDAIEVCKKFMERDPDELRFNAIA  225 (229)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEEE
Confidence            99999999999999999999999864
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence} Back     information, alignment and structure
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence} Back     information, alignment and structure