Psyllid ID: psy2634

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75
MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVYTQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPYTSAAEPFREKIPQPSTANIAVDACQVEYTNPTSVKVEGSNNPNYALLQEDSQSENDRNFIIGSVSSKLPRREREKSISCDSTSSMNTLGMGSIANSLNKISGGSMQTLRKIFSGSNDNKLTCANDGVAMKPASQSSDNLAKSAGTSMRITDQVIEELDEQMTITASGRLEPRRAAQDIFSEGNIPSSLPIDVPTNPNSDYPRNRPDSSARSSGTYAEIFTGAPTTPNEENFDLGAFDNDLMSSDGSSTVHSSRRNSSTFKDSDAKAAFESLKRSRQQEKMSVKLVRSISAAPSHTSEQDKPVEEPVEVVPPGEDSGCEFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLLERGREKRNNYLR
ccEEccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEHHHHHHHHHHHHHHccccccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEccccEEEEEEEccccccccEEEEEcccccccHHHHHHHHHHcc
cEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHEEEEEHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHcccccHHHHHHHHHcccccccccccEHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccEEEcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEccccccEEEccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccccccccHHccccccHHHHcccccccccccccEEEcccccEEEEHHHHHHcccccEEEEEcccHHHHHHcHHHHHcccc
MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKTFESIVEYCDtysnliplsFVLGFYISIIMTRWwdqynnipwpdaMAVYVSSqvhgqdergRMMRRTIMRYVCVCITMVLAnisprvkkrfpsldhFVEVGLLLENEKNIISAindkfpgppkhwmpiVWAASVVTRArkegrvrddfSVKSIIDELNRIRGQCgkllsydtvsvPLVYTQVVTLAVYSFLITTIMgrqwldvpaesdtshplrihnnyidlyfPIFTILQFFFYMGWLKVAEVLInpfgdddedfeVNWMIDRNIQVSYLIVDgmhhehpdlvrdqywddvfpselpytsaaepfrekipqpstaniavdacqveytnptsvkvegsnnpnyallqedsqsendrnfiigsvssklprrereksiscdstssmntlgmgsianslnkisggsmQTLRKIFsgsndnkltcandgvamkpasqssdnlaksagtsmrITDQVIEELDEQMTitasgrleprraaqdifsegnipsslpidvptnpnsdyprnrpdssarssgtyaeiftgapttpneenfdlgafdndlmssdgsstvhssrrnsstfkdsdAKAAFESLKRSRQQEKMSVKLVRSisaapshtseqdkpveepvevvppgedsgceflnnEGSALYklqsssnhscvpnaeikfpysnfvlnmvatrdiasgDEICISYMDEDLLERGREKRNNYLR
mtvtytaevasctgFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDkfpgppkhWMPIVWAASVVTRarkegrvrddfsvksiidelnrIRGQCGKLLSYDTVSVPLVYTQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPYTSAAEPFREKIPQPSTANIAVDACQVEYTNptsvkvegsnnpNYALLQedsqsendrnfiigsvssklprrereksiscdstssmntlGMGSIANSLNKISGGSMQTLRKIFSGSNDNKLTCANDGVAMKPASQSSDNLAKSAGTSMRITDQVIEELDEQMTITASGRLEPRRAAQDIFsegnipsslpidvptnpnsdyprnrpdssarssGTYAEIftgapttpneENFDLGAFDNDLMSSDGSstvhssrrnsstfkdsdaKAAFeslkrsrqqekmsVKLVRSIsaapshtseqdkpveEPVEVVPPGEDSGCEFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMdedllergrekrnnylr
MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDlmayltlyyalnltyryQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVYTQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPYTSAAEPFREKIPQPSTANIAVDACQVEYTNPTSVKVEGSNNPNYALLQEDSQSENDRNFIIGSVSSKLPRREREKSISCDSTSSMNTLGMGSIANSLNKISGGSMQTLRKIFSGSNDNKLTCANDGVAMKPASQSSDNLAKSAGTSMRITDQVIEELDEQMTITASGRLEPRRAAQDIFSEGNIPSSLPIDVPTNPNSDYPRNRPDSSARSSGTYAEIFTGAPTTPNEENFDLGAFDNDLMSSDGsstvhssrrnsstFKDSDAKAAFESLKRSRQQEKMSVKLVRSISAAPSHTSEQDKpveepvevvppgeDSGCEFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLLERGREKRNNYLR
***TYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVYTQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPYT****************NIAVDACQVEYT*******************************************************************************************************************************************************************************************************************************************************************************************************************SCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDED**************
MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVYTQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSEL***********************************************************************************************************************************************************************************************************************************************************************************SRQQEKMSVKLVRSISAAPSHTSEQDKPVEEPVEVVPPGEDSGCEFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLLERGRE**NNYL*
MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVYTQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPYTSAAEPFREKIPQPSTANIAVDACQVEYTNPTSVKVEGSNNPNYALLQEDSQSENDRNFIIGSVSSK**************TSSMNTLGMGSIANSLNKISGGSMQTLRKIFSGSNDNKLTCANDGVAM**************GTSMRITDQVIEELDEQMTITASGRLEPRRAAQDIFSEGNIPSSLPIDVPTNPNS*************SGTYAEIFTGAPTTPNEENFDLGAFDNDLMS***********************AAFESLKRSRQQEKMSVKLVRS**********************PPGEDSGCEFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLLERGREKRNNYLR
MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVYTQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPYTSAAEPFREKIPQPSTANIAVDACQVE**********************************************************************************************************************SMRITDQVIEELDEQMTITAS************************************************************************************************DAKAAFESLKRSRQQEKMSVKLVRSIS*********DKPVEEPVEVVPPGEDSGCEFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLLERGREKR*****
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVYTQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPYTSAAEPFREKIPQPSTANIAVDACQVEYTNPTSVKVEGSNNPNYALLQEDSQSENDRNFIIGSVSSKLPRREREKSISCDSTSSMNTLGMGSIANSLNKISGGSMQTLRKIFSGSNDNKLTCANDGVAMKPASQSSDNLAKSAGTSMRITDQVIEELDEQMTITASGRLEPRRAAQDIFSEGNIPSSLPIDVPTNPNSDYPRNRPDSSARSSGTYAEIFTGAPTTPNEENFDLGAFDNDLMSSDGSSTVHSSRRNSSTFKDSDAKAAFESLKRSRQQEKMSVKLVRSISAAPSHTSEQDKPVEEPVEVVPPGEDSGCEFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLLERGREKRNNYLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query749 2.2.26 [Sep-21-2011]
Q8BGM5508 Bestrophin-2 OS=Mus muscu yes N/A 0.511 0.753 0.485 1e-107
Q8N1M1668 Bestrophin-3 OS=Homo sapi yes N/A 0.468 0.525 0.497 1e-107
Q6H1V1669 Bestrophin-3 OS=Mus muscu no N/A 0.467 0.523 0.498 1e-107
Q8NFU1509 Bestrophin-2 OS=Homo sapi no N/A 0.511 0.752 0.477 1e-106
O76090585 Bestrophin-1 OS=Homo sapi no N/A 0.496 0.635 0.465 1e-104
Q6UY87585 Bestrophin-1 OS=Macaca fa N/A N/A 0.496 0.635 0.465 1e-103
O88870551 Bestrophin-1 OS=Mus muscu no N/A 0.496 0.675 0.467 1e-102
Q8NFU0473 Bestrophin-4 OS=Homo sapi no N/A 0.481 0.763 0.453 2e-99
P34672632 Uncharacterized protein Z no N/A 0.453 0.537 0.403 2e-77
Q22566501 Uncharacterized protein T no N/A 0.552 0.826 0.34 4e-67
>sp|Q8BGM5|BEST2_MOUSE Bestrophin-2 OS=Mus musculus GN=Best2 PE=2 SV=1 Back     alignment and function desciption
 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/404 (48%), Positives = 275/404 (68%), Gaps = 21/404 (5%)

Query: 1   MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQK 60
           MTVTYTA VA+   FG F +LL  WRGSIYKL+W +L+ +L LY AL+  YR+ L  EQK
Sbjct: 1   MTVTYTARVANAR-FGGFSQLLLLWRGSIYKLLWRELLCFLGLYMALSAAYRFLLAEEQK 59

Query: 61  KTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDE 120
           + FE +V YCD Y++LIP+SFVLGFY+++++ RWW+QY  +P PDA+   V+  VHG+D+
Sbjct: 60  RYFEKLVIYCDQYASLIPVSFVLGFYVTLVVHRWWNQYLCMPLPDALMCIVAGTVHGRDD 119

Query: 121 RGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFP 180
           RGR+ RRT+MRY  +   ++L ++S  V KRFP++DH VE G +   E+     +N  + 
Sbjct: 120 RGRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSY- 178

Query: 181 GPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVY 240
              K+W+P VW +S+  +AR+EGR+RD+ ++K +++ELN  R +CG L  YD +S+PLVY
Sbjct: 179 --NKYWVPCVWFSSLAAQARREGRIRDNSALKLLLEELNVFRSKCGMLFHYDWISIPLVY 236

Query: 241 TQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWL 300
           TQVVT+AVYS+ +  ++GRQ+LD PA+    H L       DL  PIFT+LQFFFY GWL
Sbjct: 237 TQVVTIAVYSYFLACLIGRQFLD-PAQGYKDHTL-------DLCVPIFTLLQFFFYAGWL 288

Query: 301 KVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPY 360
           KVAE LINPFG+DD+DFE N++IDRN QVS L VD M+ +   L +D YWD    +  PY
Sbjct: 289 KVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDDLAMLEKDLYWDAA-EARAPY 347

Query: 361 TSAAEPFREKIP--QPSTANIAVDACQVEYTNPTSVKVEGSNNP 402
           T AA  F  + P  Q ST +IA+    +++      +++G + P
Sbjct: 348 T-AATAFLLQQPSFQGSTFDIALAKEDMQFQ-----RLDGVDGP 385
Forms calcium-sensitive chloride channels. Permeable to bicarbonate.
Mus musculus (taxid: 10090)
>sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2 SV=1 Back     alignment and function description
>sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2 SV=1 Back     alignment and function description
>sp|Q8NFU1|BEST2_HUMAN Bestrophin-2 OS=Homo sapiens GN=BEST2 PE=2 SV=1 Back     alignment and function description
>sp|O76090|BEST1_HUMAN Bestrophin-1 OS=Homo sapiens GN=BEST1 PE=1 SV=1 Back     alignment and function description
>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1 PE=2 SV=1 Back     alignment and function description
>sp|O88870|BEST1_MOUSE Bestrophin-1 OS=Mus musculus GN=Best1 PE=2 SV=3 Back     alignment and function description
>sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2 SV=1 Back     alignment and function description
>sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2 OS=Caenorhabditis elegans GN=ZK688.2 PE=3 SV=1 Back     alignment and function description
>sp|Q22566|YSV1_CAEEL Uncharacterized protein T19C3.1 OS=Caenorhabditis elegans GN=T19C3.1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query749
193601260656 PREDICTED: bestrophin-2-like [Acyrthosip 0.789 0.900 0.567 0.0
390177458721 GA19476, isoform B [Drosophila pseudoobs 0.829 0.861 0.511 0.0
198451006765 GA19476, isoform A [Drosophila pseudoobs 0.861 0.843 0.494 0.0
195388772780 GJ23667 [Drosophila virilis] gi|19415113 0.859 0.825 0.5 0.0
242003486599 Bestrophin-1, putative [Pediculus humanu 0.743 0.929 0.543 0.0
194740974722 GF17535 [Drosophila ananassae] gi|190626 0.823 0.854 0.513 0.0
195107953782 GI24037 [Drosophila mojavensis] gi|19391 0.861 0.824 0.495 0.0
21358115721 bestrophin 1, isoform A [Drosophila mela 0.823 0.855 0.505 0.0
195037160779 Rfp1 [Drosophila grimshawi] gi|193894228 0.720 0.693 0.577 0.0
195330153767 GM26180 [Drosophila sechellia] gi|194120 0.853 0.833 0.493 0.0
>gi|193601260|ref|XP_001943440.1| PREDICTED: bestrophin-2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/640 (56%), Positives = 442/640 (69%), Gaps = 49/640 (7%)

Query: 1   MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQK 60
           MTVTYTAEVA+C GFGCFLKLL RWRGSIYKLVWPDL A+L  YY LNLTYR+ LN +QK
Sbjct: 1   MTVTYTAEVATCRGFGCFLKLLLRWRGSIYKLVWPDLAAFLVCYYTLNLTYRFVLNQQQK 60

Query: 61  KTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDE 120
           + FESI +YC+TYS+LIPLSFVLGFYISIIM RWWDQY +IPWPD +AVYVSS +HGQDE
Sbjct: 61  RIFESIADYCETYSDLIPLSFVLGFYISIIMQRWWDQYCSIPWPDPIAVYVSSHIHGQDE 120

Query: 121 RGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFP 180
           RGR+MRRTIMRYVC+ +TMV +NISPRVKKRFP+LDHFVE GLLLENEK I+  +NDKFP
Sbjct: 121 RGRLMRRTIMRYVCLGLTMVFSNISPRVKKRFPTLDHFVEAGLLLENEKTIVLDLNDKFP 180

Query: 181 GPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVY 240
              KHW+P+VWAAS+VTRARKEGR+RDDF+VK+IIDELN+ RGQCG LL+YD++SVPLVY
Sbjct: 181 RHSKHWLPVVWAASIVTRARKEGRIRDDFAVKTIIDELNKFRGQCGLLLNYDSISVPLVY 240

Query: 241 TQVVTLAVYSFLITTIMGRQWLDVPAE--SDTSHPLRIHN---NYIDLYFPIFTILQFFF 295
           TQVVTLAVYSF ITT+MGRQWLD P    ++  H    ++   NYIDLYFP+FT LQFFF
Sbjct: 241 TQVVTLAVYSFFITTVMGRQWLDKPVVPLANLKHQTETNSANYNYIDLYFPVFTTLQFFF 300

Query: 296 YMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFP 355
           YMGWLKVAE LINPFG+DD+DFEVNW+IDRN+QVSYLIVD MHHEHP+L+RDQYWD VFP
Sbjct: 301 YMGWLKVAESLINPFGEDDDDFEVNWIIDRNVQVSYLIVDEMHHEHPELIRDQYWDQVFP 360

Query: 356 SELPYTSAAEPFREKIPQPSTANIAVDACQVEYTNPTSVKVEGSNNPNYALLQEDSQSEN 415
           +ELPYT AA   RE+ P+PSTANIAV     EY+ P           +     +D  + +
Sbjct: 361 TELPYTVAAGE-RERHPEPSTANIAVSDADAEYSLP-------PKGCDDGQTIDDDDANS 412

Query: 416 DRNFIIGSVSSKLPRR-EREKSI-SCDSTSSMNTLGMGSIANSLNKISGGSMQTLRKIFS 473
             +F+  + S K      R + I S  S    + L   S+A+SLN++ G     L+ +F 
Sbjct: 413 GIHFVATAGSYKRSNSLLRGRPISSHSSNDHHHHLNNQSVASSLNRV-GSVTSILKNLFK 471

Query: 474 GSNDNKLTCANDGVAMKPASQS----------------SDNLAKSAGTSMRITDQVIEEL 517
            +         DG+  + +S +                S  L +    S+RI DQVIEEL
Sbjct: 472 RTGGTSTQLGGDGLLSRVSSSNRLPGSSWQSQESLQSSSSKLLQQQFGSVRIADQVIEEL 531

Query: 518 DEQMTITASGRLEPRRAAQDIFSEGNIPSSLPIDVPTNPNSDYPRNRPDSSARSSGTYAE 577
           DEQMTITA GRLE R        + N+ +  P      P    P N   SS  S+ TY E
Sbjct: 532 DEQMTITAGGRLERRS------EKPNVRTVFP------PQPPLP-NDSASSNLSNITYTE 578

Query: 578 IFTGAPTTPNEENFDLGAFDNDLMSSDGSSTVHSSRRNSS 617
           +     +T ++  +  G  ++ LM SD  S+ H +   SS
Sbjct: 579 VL----STNDDFGYQDGKQEDTLMRSDSDSSNHHTPSTSS 614

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|390177458|ref|XP_003736382.1| GA19476, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859053|gb|EIM52455.1| GA19476, isoform B [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|198451006|ref|XP_001358209.2| GA19476, isoform A [Drosophila pseudoobscura pseudoobscura] gi|198131292|gb|EAL27346.2| GA19476, isoform A [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195388772|ref|XP_002053053.1| GJ23667 [Drosophila virilis] gi|194151139|gb|EDW66573.1| GJ23667 [Drosophila virilis] Back     alignment and taxonomy information
>gi|242003486|ref|XP_002422751.1| Bestrophin-1, putative [Pediculus humanus corporis] gi|212505584|gb|EEB10013.1| Bestrophin-1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|194740974|ref|XP_001952964.1| GF17535 [Drosophila ananassae] gi|190626023|gb|EDV41547.1| GF17535 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195107953|ref|XP_001998558.1| GI24037 [Drosophila mojavensis] gi|193915152|gb|EDW14019.1| GI24037 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|21358115|ref|NP_652603.1| bestrophin 1, isoform A [Drosophila melanogaster] gi|6942151|gb|AAF32327.1|AF218817_1 Dbest [Drosophila melanogaster] gi|7299309|gb|AAF54503.1| bestrophin 1, isoform A [Drosophila melanogaster] gi|16769750|gb|AAL29094.1| LP05915p [Drosophila melanogaster] gi|41216914|gb|AAR99659.1| bestrophin 1 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195037160|ref|XP_001990032.1| Rfp1 [Drosophila grimshawi] gi|193894228|gb|EDV93094.1| Rfp1 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195330153|ref|XP_002031772.1| GM26180 [Drosophila sechellia] gi|194120715|gb|EDW42758.1| GM26180 [Drosophila sechellia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query749
FB|FBgn0040238769 Best1 "Bestrophin 1" [Drosophi 0.523 0.509 0.680 7.4e-168
FB|FBgn0036492535 Best3 "Bestrophin 3" [Drosophi 0.495 0.693 0.616 2.2e-130
FB|FBgn0036491526 Best4 "Bestrophin 4" [Drosophi 0.488 0.695 0.568 3.2e-120
FB|FBgn0035696809 Best2 "Bestrophin 2" [Drosophi 0.508 0.470 0.469 3.2e-100
UNIPROTKB|E1C3A0425 BEST1 "Uncharacterized protein 0.552 0.974 0.440 7.6e-96
UNIPROTKB|E1BF90665 BEST3 "Uncharacterized protein 0.472 0.532 0.479 2.3e-94
UNIPROTKB|Q8N1M1668 BEST3 "Bestrophin-3" [Homo sap 0.472 0.529 0.482 2.3e-94
MGI|MGI:3580298669 Best3 "bestrophin 3" [Mus musc 0.472 0.529 0.479 3.8e-94
UNIPROTKB|E2RSZ4509 BEST2 "Uncharacterized protein 0.489 0.721 0.488 4.8e-94
UNIPROTKB|F1SDY1507 BEST2 "Uncharacterized protein 0.491 0.725 0.482 4.8e-94
FB|FBgn0040238 Best1 "Bestrophin 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1496 (531.7 bits), Expect = 7.4e-168, Sum P(3) = 7.4e-168
 Identities = 270/397 (68%), Positives = 322/397 (81%)

Query:     1 MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDXXXXXXXXXXXXXXXXXQLNPEQK 60
             MT+TYT EVA+C GFGCFLKLL RWRGSIYKLVW D                  LNP QK
Sbjct:     1 MTITYTGEVATCRGFGCFLKLLLRWRGSIYKLVWLDLLAFLTIYYAINMVYRFGLNPAQK 60

Query:    61 KTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDE 120
             +TFE+IV+YCD+Y  LIPLSFVLGFY+SI+MTRWW+QY +IPWPD +AV+VSS VHGQDE
Sbjct:    61 ETFEAIVQYCDSYRELIPLSFVLGFYVSIVMTRWWNQYTSIPWPDPIAVFVSSNVHGQDE 120

Query:   121 RGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNIISAINDKFP 180
             RGRMMRRTIMRYVC+C+TMVLAN+SPRVKKRFP L++ VE GLL +NEK II  +N  FP
Sbjct:   121 RGRMMRRTIMRYVCLCLTMVLANVSPRVKKRFPGLNNLVEAGLLNDNEKTIIETMNKAFP 180

Query:   181 GPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVY 240
              P KHW+PIVWAAS++TRARKEGR+RDDF+VK+IIDELN+ RGQCG L+SYDT+SVPLVY
Sbjct:   181 RPSKHWLPIVWAASIITRARKEGRIRDDFAVKTIIDELNKFRGQCGLLISYDTISVPLVY 240

Query:   241 TQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWL 300
             TQVVTLAVYS+ +T  MG+QW D     +T++      N +DLYFP+FT LQFFFYMGWL
Sbjct:   241 TQVVTLAVYSYFLTCCMGQQWTDGKVVGNTTYL-----NKVDLYFPVFTTLQFFFYMGWL 295

Query:   301 KVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPY 360
             KVAE LINPFG+DD+DFEVNWM+DRN+QVSYLIVD MHH+HP+L++DQYWD+VFP+ELPY
Sbjct:   296 KVAESLINPFGEDDDDFEVNWMVDRNLQVSYLIVDEMHHDHPELLKDQYWDEVFPNELPY 355

Query:   361 TSAAEPFREKIPQPSTANIAVDACQVEYTNPTSVKVE 397
             T AAE FRE  P+PSTA I V       +  +SV+++
Sbjct:   356 TIAAERFRENHPEPSTAKIEVPKNAAMPSTMSSVRID 392
GO:0005254 "chloride channel activity" evidence=NAS;IDA
GO:0072320 "volume-sensitive chloride channel activity" evidence=IDA
GO:0016021 "integral to membrane" evidence=IDA
GO:0006884 "cell volume homeostasis" evidence=IDA
GO:0006821 "chloride transport" evidence=IDA
FB|FBgn0036492 Best3 "Bestrophin 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036491 Best4 "Bestrophin 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0035696 Best2 "Bestrophin 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3A0 BEST1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BF90 BEST3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N1M1 BEST3 "Bestrophin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:3580298 Best3 "bestrophin 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSZ4 BEST2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDY1 BEST2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
pfam01062284 pfam01062, Bestrophin, Bestrophin, RFP-TM, chlorid 1e-96
pfam00856113 pfam00856, SET, SET domain 1e-07
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 4e-06
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 0.001
>gnl|CDD|216274 pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel Back     alignment and domain information 
 Score =  300 bits (772), Expect = 1e-96
 Identities = 109/340 (32%), Positives = 159/340 (46%), Gaps = 67/340 (19%)

Query: 1   MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQK 60
           M V              F +LL RWRGSI K +WP+L+ +L L   +   Y         
Sbjct: 1   MIVRPR---------PNFFRLLFRWRGSILKSIWPELLVFLLLSALVTAIYI-------- 43

Query: 61  KTFESIVEYCDTYSNL----IPLSFVLGFYISIIMTRWWDQYNN----IPWPDAMAVYVS 112
             FE + +YC   +      + LSF LGF  +    RWW+        + W  ++A  VS
Sbjct: 44  --FELLAKYCLPIAPFTLIGLALSFFLGFRNNAAYDRWWEARKLWGALVNWSRSLARQVS 101

Query: 113 SQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNII 172
           + + G DER R++RRTI  Y      + L  ISP V      L+H     LL E E+  +
Sbjct: 102 TLIPGDDERRRLLRRTIA-YAHALRAL-LRGISPAVD-----LEH-----LLSEEEEEKL 149

Query: 173 SAINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYD 232
              ++     P + + IVWAAS+  +AR+EGR+ DD  +  + +ELN +R   G     D
Sbjct: 150 LQSSN-----PPYALLIVWAASL-AKARREGRI-DDIQLVQLDEELNELRDALGGCERID 202

Query: 233 TVSVPLVYTQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQ 292
              +PL YTQ+V  AVY + +    G Q                    +  + P+FT+L 
Sbjct: 203 WTPIPLAYTQLVHRAVYLYCLLLPFGLQD------------------TLGWFTPLFTVLI 244

Query: 293 FFFYMGWLKVAEVLINPFGDDDEDFEVNWM---IDRNIQV 329
           F+F+ G  KV E L NPFG+DD D  +N +   I+RN+  
Sbjct: 245 FYFFFGLDKVGEELENPFGEDDNDLPLNALCRTIERNLLE 284

Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members. Length = 284
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 749
KOG3547|consensus450 100.0
PF01062293 Bestrophin: Bestrophin, RFP-TM, chloride channel; 100.0
COG3781306 Predicted membrane protein [Function unknown] 100.0
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.12
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 98.89
KOG2084|consensus 482 97.87
KOG4442|consensus 729 97.61
KOG2589|consensus 453 97.58
KOG1080|consensus1005 97.44
COG2940480 Proteins containing SET domain [General function p 96.33
KOG1082|consensus364 95.62
KOG1083|consensus1306 94.14
KOG1079|consensus739 92.15
KOG1085|consensus392 91.43
KOG1141|consensus1262 90.39
KOG1337|consensus 472 90.38
>KOG3547|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.3e-111  Score=925.63  Aligned_cols=375  Identities=47%  Similarity=0.889  Sum_probs=354.8

Q ss_pred             CceecccccccccCchhHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhhhHHHHHhhhcccCCcccee
Q psy2634           1 MTVTYTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKTFESIVEYCDTYSNLIPLS   80 (749)
Q Consensus         1 MTvsY~~~vat~~~~~~flrLLfrWRGSI~K~Iw~eLLv~l~ly~~vs~iYr~~L~~~~k~~Fe~i~~y~~~~t~~IpLs   80 (749)
                      |||+|+.+|+| +.+++|+||||||||||||+||+||++|+++|++|+++||++|++.||++||+++.||+.+.++|||+
T Consensus         1 MTv~Y~~~v~t-~~~~~f~kll~rWkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~qq~~Fe~~~~~~d~~~~~iPLt   79 (450)
T KOG3547|consen    1 MTVSYNLDVAT-SYSFTFLKLLLRWKGSIWKAIWKELLIWLILYYIISVIYRFALTESQQETFEKFVMYCDSRLDFIPLT   79 (450)
T ss_pred             CeeeehHHhhh-hccHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcccccccch
Confidence            99999999999 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeehhhHhHHHHHHHHHHhcCCcchhhHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhhccchhhhccCCCchhHHH
Q psy2634          81 FVLGFYISIIMTRWWDQYNNIPWPDAMAVYVSSQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVE  160 (749)
Q Consensus        81 f~LGF~vn~vy~RWWe~r~~ig~~d~lA~~v~~~i~g~der~rliRRtI~RYl~La~vL~~R~IS~~lRkRfPt~~~Lv~  160 (749)
                      |+|||||++|++|||+++.++||||++|..++++++|.+|++|++||+|+||++|+++|+|||||.+|||||||++++|+
T Consensus        80 FmLGFfVt~Vv~RW~~~f~nig~id~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkRFPt~d~lv~  159 (450)
T KOG3547|consen   80 FMLGFFVTIVVDRWWKQFRNIGWIDNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKRFPTLDHLVE  159 (450)
T ss_pred             HhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHhcccCCCCCCCchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhHhhcCCcccCchHH
Q psy2634         161 VGLLLENEKNIISAINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIIDELNRIRGQCGKLLSYDTVSVPLVY  240 (749)
Q Consensus       161 aGlLteeE~~~le~~~~~~p~~~k~wvpi~W~~~ll~~arkeGrI~~~~~l~~ll~eL~~fR~~CerL~~yDwtPIPLaY  240 (749)
                      ||||+++|+++++++...+  +.|||+||+|+.+++++|+++|+|.++..++.+++||.+||.+|+.|++|||+||||||
T Consensus       160 AG~mt~~E~~~~~~~~~~~--~~kyw~Pi~Wa~sl~~~a~~~g~i~~d~~~~~~~~ei~~fR~~l~~L~~yDwVpIPL~Y  237 (450)
T KOG3547|consen  160 AGLMTEEELDILENIVDSK--YMKYWVPINWAFSLLRKARKEGRIESDYLYNSLLGEIKKFRTGLSLLCNYDWVPIPLVY  237 (450)
T ss_pred             hcCCcHHHHHHHHhccccc--ccceeecHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhccccCCCceeccccc
Confidence            9999999999999987643  34999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHH
Q psy2634         241 TQVVTLAVYSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVN  320 (749)
Q Consensus       241 tQvVtlaVY~Yfl~~lfgrQ~~~~~~~~~~~~~~~~~~~~id~y~Pi~T~Lqffff~GwlKVAe~LiNPFGeDDDDfeln  320 (749)
                      +|||++|||+||++|+||||+++.+.+         ..+.+|+|||+||++||+||||||||||.|+|||||||||||||
T Consensus       238 pQvV~lAVr~YF~~cL~~RQ~l~~~~~---------~~~~id~~fPi~T~lQFiF~vGWmKVaE~LlNP~GEDDDDFE~N  308 (450)
T KOG3547|consen  238 PQVVFLAVRSYFFICLFGRQYLDRDDS---------KKTEIDLYFPIMTILQFIFYVGWLKVAEVLLNPLGEDDDDFECN  308 (450)
T ss_pred             cceeeeehHHhHHHHhhccccCCcccc---------cccccceeehhHHHHHHHHHhhHHHHHHHHhCCCCCCcchhhHH
Confidence            999999999999999999999997641         25789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhheeeccCccCCCCCcccccCCCCCCCCCCCccccccccc-cCCCCCccceeeeccccccc
Q psy2634         321 WMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPYTSAAEPFR-EKIPQPSTANIAVDACQVEY  388 (749)
Q Consensus       321 ~LIdRNievslliVDe~~~~~P~l~~D~yw~~~~~~~lPyt~~s~~~~-~~~~~~s~~~~~~~~~~~~~  388 (749)
                      ||||||++++|+|||++|+++|+|++|+||++..+. +.|+.+++..+ .++++||++++++.+.+++.
T Consensus       309 ~liDRNl~vgl~IVD~~~~~~P~l~~D~f~d~~~~~-p~y~~~s~~~~~~~~~~gS~~~~~~~~~~~~~  376 (450)
T KOG3547|consen  309 YLIDRNLTVGLAIVDEMHDDHPELEKDQFWDDVDVL-PLYSEASADSKNNHALVGSAANVSLAKEDEEN  376 (450)
T ss_pred             HhhhhhHHHHHHHhhhhhccCccccccccCCCCCcC-CCCchhhhhccccccCCCChhhhhcccccccc
Confidence            999999999999999999999999999999998775 44776654444 44599999999988765433

>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE) Back     alignment and domain information
>COG3781 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG2084|consensus Back     alignment and domain information
>KOG4442|consensus Back     alignment and domain information
>KOG2589|consensus Back     alignment and domain information
>KOG1080|consensus Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG1082|consensus Back     alignment and domain information
>KOG1083|consensus Back     alignment and domain information
>KOG1079|consensus Back     alignment and domain information
>KOG1085|consensus Back     alignment and domain information
>KOG1141|consensus Back     alignment and domain information
>KOG1337|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 6e-14
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 1e-13
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 3e-07
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 7e-05
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
 Score = 73.8 bits (180), Expect = 6e-14
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 678 EFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL 737
             +   G  LY   S  NHSC PN  I F  +   L + A RDI  G+E+ I Y+D   +
Sbjct: 189 AEMQEVGVGLYPSISLLNHSCDPNCSIVF--NGPHLLLRAVRDIEVGEELTICYLD---M 243

Query: 738 ERGREKRNNYLR 749
               E+R   LR
Sbjct: 244 LMTSEERRKQLR 255
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query749
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 99.64
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 99.63
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 99.61
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.08
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 98.87
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 98.68
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 98.62
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 98.43
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 98.39
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 98.34
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 98.32
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 98.29
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 98.21
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 98.18
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 98.15
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 98.15
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 98.09
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 98.06
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 97.93
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 97.93
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 97.58
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 97.15
3db5_A151 PR domain zinc finger protein 4; methyltransferase 96.43
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 96.09
3dal_A196 PR domain zinc finger protein 1; methyltransferase 95.29
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 94.54
3ray_A237 PR domain-containing protein 11; structural genomi 93.31
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
Probab=99.64  E-value=6.1e-17  Score=178.84  Aligned_cols=126  Identities=26%  Similarity=0.315  Sum_probs=93.3

Q ss_pred             ChHHHHHHHhcCChhHHHHH----HHHHHHHhhcCCCCCCCCCCCCCCCccccccCCCccCcc-cCCCcceEeecccccc
Q psy2634         620 KDSDAKAAFESLKRSRQQEK----MSVKLVRSISAAPSHTSEQDKPVEEPVEVVPPGEDSGCE-FLNNEGSALYKLQSSS  694 (749)
Q Consensus       620 s~~dL~shf~~L~~e~ke~~----~~l~ly~s~~~~~~~~ss~~~~I~~l~~~~~cN~~~~n~-fl~~~G~glyp~~S~~  694 (749)
                      .+.+|++|.+++++++++.+    ..+..|+.....+.........+.++++++.||+|.-.. -....|.|+||.+|++
T Consensus       126 ~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~N~f~i~~~~~~~~g~~l~~~~s~~  205 (429)
T 3qwp_A          126 SFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLL  205 (429)
T ss_dssp             CGGGCCCCGGGCCHHHHHHHHHHHHHHHHHTTTTCCSGGGSCTTCCHHHHHHHHHHHCEEEECTTSCEEEEEECTTGGGC
T ss_pred             hHHHHhhChhhcChhHHHHHHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHHHhcCccccccccccceEEEchhhHhh
Confidence            57889999999998887744    334455533211100000112345566777799965321 1566799999999999


Q ss_pred             cCCCCCCceeeeeCCccEEEEEEecCCCCCCeEEEecCCC--ChHHHHHHHHHhh
Q psy2634         695 NHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDE--DLLERGREKRNNY  747 (749)
Q Consensus       695 NHSC~PNa~~~f~~~~~~~~v~A~r~I~~GEEItISYid~--~~~~Rqr~Lr~~Y  747 (749)
                      ||||.|||.+.|++  .++.++|+|+|++||||||||++.  ...+||+.|+++|
T Consensus       206 NHsC~PN~~~~~~~--~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L~~~~  258 (429)
T 3qwp_A          206 NHSCDPNCSIVFNG--PHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQY  258 (429)
T ss_dssp             EECSSCSEEEEEET--TEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHHHHHH
T ss_pred             CcCCCCCeEEEEeC--CEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHHhccC
Confidence            99999999999986  479999999999999999999987  4678999999877
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 749
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 3e-08
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 2e-04
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 3e-04
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 0.002
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

 Score = 50.2 bits (119), Expect = 3e-08
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 695 NHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLLERGREKRN 745
           NHS  PNA  +       + +   + IA G+EI ISY D+  L R R  +N
Sbjct: 69  NHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN 119
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query749
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 98.81
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.81
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 98.27
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 98.12
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 97.98
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=98.81  E-value=5.9e-10  Score=100.00  Aligned_cols=50  Identities=32%  Similarity=0.368  Sum_probs=42.9

Q ss_pred             ecccccccCCCCCCceeeeeCCccEEEEEEecCCCCCCeEEEecCCCChH
Q psy2634         688 YKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL  737 (749)
Q Consensus       688 yp~~S~~NHSC~PNa~~~f~~~~~~~~v~A~r~I~~GEEItISYid~~~~  737 (749)
                      .+.++++||||.|||...+..+...+.++|+|+|++|||||++|.+....
T Consensus        62 ~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GEEL~~dYg~~yw~  111 (119)
T d2g46a1          62 LGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWL  111 (119)
T ss_dssp             CSTTSSCCCCSSCCCEEEECSSSSEEEEECSSCBCTTEEECCCCCSSSCC
T ss_pred             cCCeEEEEecCCcCceEEEECCCCEEEEEECcccCCCCEEEEecChhHhc
Confidence            34578899999999998887766789999999999999999999876443
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure