Psyllid ID: psy2643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHISSTSMIETPESITTQMHT
Secondary Structure (PSIPRED)
cccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccccccHccccEccccHHHHHHHccc
Coil and Loop (DISEMBL)
ckqcgktfkrsstlsthllihsdtrpypcqycgkrfhqksdmkkhtyihtgekphkcvvcgkafsqsSNLITHLRkhtgykpfscglcdkAFQRKVDLrrhresqhpgspaqqhhisstsmietpesittqmht
Flexible Loop (DISEMBL)
ckqcgktfkrsstlsthllihsdtrpyPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHResqhpgspaqqhhisstsmietpesittqmht
Low Complexity Region (SEG)
CKQCGKTFKRsstlsthllihsDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHISSTSMIETPESITTQMHT
Disordered region (IsUnstruct)
**************STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRK***************************************
Disordered Region (DISOPRED)
CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHISSTSMIETPESITTQM**
Disordered Region (DISEMBL)
**************STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVD*********************TSMIETP*********
Disordered Region (DISPRO)
CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHISSTSMIETPESI******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHISSTSMIETPESITTQMHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q9N658	541	Zinc finger protein sens	yes	N/A	0.820	0.203	0.890	2e-56
O42409	337	Zinc finger protein Gfi-1	yes	N/A	0.783	0.311	0.924	2e-53
O70237	330	Zinc finger protein Gfi-1	no	N/A	0.783	0.318	0.905	8e-53
Q5VTD9	330	Zinc finger protein Gfi-1	no	N/A	0.783	0.318	0.905	1e-52
Q6DCW1	343	Zinc finger protein Gfi-1	N/A	N/A	0.783	0.306	0.915	2e-52
Q07120	423	Zinc finger protein Gfi-1	no	N/A	0.783	0.248	0.896	3e-52
P70338	423	Zinc finger protein Gfi-1	no	N/A	0.783	0.248	0.896	4e-52
Q99684	422	Zinc finger protein Gfi-1	no	N/A	0.783	0.248	0.896	6e-52
Q5DWN0	422	Zinc finger protein Gfi-1	no	N/A	0.783	0.248	0.896	7e-52
Q28G88	435	Fez family zinc finger pr	no	N/A	0.791	0.243	0.509	2e-27

>sp|Q9N658|GFI1_DROME Zinc finger protein sens OS=Drosophila melanogaster GN=sens PE=1 SV=1

 Score =  216 bits (551), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/110 (89%), Positives = 104/110 (94%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CKQCGK+FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct: 415 CKQCGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCTVC 474

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSP 110
            KAFSQSSNLITH+RKHTGYKPF C LCD++FQRKVDLRRHRES+H  +P
Sbjct: 475 LKAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRESRHEEAP 524

Transcription factor both necessary and sufficient for proper development of most cell types of the embryonic and adult peripheral nervous system (PNS). Essential component of the proneural Notch signaling pathway required for proper sensory organ precursor (SOP) differentiation. Correct expression requires expression of scalloped (sd). Repression of rough (ro) in R8 photoreceptor is an essential mechanism of R8 cell fate determination.
Drosophila melanogaster (taxid: 7227)

>sp|O42409|GFI1B_CHICK Zinc finger protein Gfi-1b OS=Gallus gallus GN=GFI1B PE=2 SV=1

 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/106 (92%), Positives = 100/106 (94%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CK CGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct: 229 CKMCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 288

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRE+QH
Sbjct: 289 GKAFSQSSNLITHSRKHTGFKPFSCELCAKGFQRKVDLRRHRETQH 334

Essential transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.

Gallus gallus (taxid: 9031)

>sp|O70237|GFI1B_MOUSE Zinc finger protein Gfi-1b OS=Mus musculus GN=Gfi1b PE=1 SV=1

 Score =  205 bits (521), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/106 (90%), Positives = 99/106 (93%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C+ CGK FKRSSTLSTHLLIHSDTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct: 222 CRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 281

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRESQH
Sbjct: 282 GKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQH 327

Essential proto-oncogenic transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Component of a RCOR-GFI-KDM1A-HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development and controls hematopoietic differentiation. Transcriptional repressor or activator depending on both promoter and cell type context; represses promoter activity of SOCS1 and SOCS3 and thus, may regulate cytokine signaling pathways. Cooperates with GATA1 to repress target gene transcription, such as the apoptosis regulator BCL2L1; GFI1B silencing in leukemic cell lines markedly increase apoptosis rate. Inhibits down-regulation of MYC and MYB as well as the cyclin-dependent kinase inhibitor CDKN1A/P21WAF1 in IL6-treated myelomonocytic cells. Represses expression of GATA3 in T-cell lymphomas and inhibits GATA1-mediated transcription; as GATA1 also mediates erythroid GFI1B transcription, both GATA1 and GFI1B participate in a feedback regulatory pathway controlling the expression of GFI1B gene in erythroid cells. Suppresses GATA1-mediated stimulation of GFI1B promoter through protein interaction. Binds to gamma-satellite DNA and to its own promoter, auto-repressing its own expression. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.

Mus musculus (taxid: 10090)

>sp|Q5VTD9|GFI1B_HUMAN Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1

 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/106 (90%), Positives = 99/106 (93%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C+ CGK FKRSSTLSTHLLIHSDTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct: 222 CRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 281

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRESQH
Sbjct: 282 GKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQH 327

Essential proto-oncogenic transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Component of a RCOR-GFI-KDM1A-HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development and controls hematopoietic differentiation. Transcriptional repressor or activator depending on both promoter and cell type context; represses promoter activity of SOCS1 and SOCS3 and thus, may regulate cytokine signaling pathways. Cooperates with GATA1 to repress target gene transcription, such as the apoptosis regulator BCL2L1; GFI1B silencing in leukemic cell lines markedly increase apoptosis rate. Inhibits down-regulation of MYC and MYB as well as the cyclin-dependent kinase inhibitor CDKN1A/P21WAF1 in IL6-treated myelomonocytic cells. Represses expression of GATA3 in T-cell lymphomas and inhibits GATA1-mediated transcription; as GATA1 also mediates erythroid GFI1B transcription, both GATA1 and GFI1B participate in a feedback regulatory pathway controlling the expression of GFI1B gene in erythroid cells. Suppresses GATA1-mediated stimulation of GFI1B promoter through protein interaction. Binds to gamma-satellite DNA and to its own promoter, auto-repressing its own expression. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.

Homo sapiens (taxid: 9606)

>sp|Q6DCW1|GFI1B_XENLA Zinc finger protein Gfi-1b OS=Xenopus laevis GN=gfi1b PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/106 (91%), Positives = 100/106 (94%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CK CGKTFKRSSTLSTHLLIHSDTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct: 235 CKMCGKTFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 294

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRE+QH
Sbjct: 295 GKAFSQSSNLITHSRKHTGFKPFSCDLCCKGFQRKVDLRRHRENQH 340

Essential transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.

Xenopus laevis (taxid: 8355)

>sp|Q07120|GFI1_RAT Zinc finger protein Gfi-1 OS=Rattus norvegicus GN=Gfi1 PE=1 SV=1

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 99/106 (93%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CK CGK+FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT+IHTGEKPHKC VC
Sbjct: 315 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 374

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           GKAFSQSSNLITH RKHTG+KPF C LC K FQRKVDLRRHRE+QH
Sbjct: 375 GKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 420

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter region. Implicated in the maintenance of inner ear hair cells.

Rattus norvegicus (taxid: 10116)

>sp|P70338|GFI1_MOUSE Zinc finger protein Gfi-1 OS=Mus musculus GN=Gfi1 PE=1 SV=2

 Score =  202 bits (515), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 99/106 (93%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CK CGK+FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT+IHTGEKPHKC VC
Sbjct: 315 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 374

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           GKAFSQSSNLITH RKHTG+KPF C LC K FQRKVDLRRHRE+QH
Sbjct: 375 GKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 420

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Mus musculus (taxid: 10090)

>sp|Q99684|GFI1_HUMAN Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2

 Score =  202 bits (513), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 99/106 (93%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CK CGK+FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT+IHTGEKPHKC VC
Sbjct: 314 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 373

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           GKAFSQSSNLITH RKHTG+KPF C LC K FQRKVDLRRHRE+QH
Sbjct: 374 GKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 419

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Homo sapiens (taxid: 9606)

>sp|Q5DWN0|GFI1_CANFA Zinc finger protein Gfi-1 OS=Canis familiaris GN=GFI1 PE=2 SV=1

 Score =  202 bits (513), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 99/106 (93%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CK CGK+FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT+IHTGEKPHKC VC
Sbjct: 314 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 373

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           GKAFSQSSNLITH RKHTG+KPF C LC K FQRKVDLRRHRE+QH
Sbjct: 374 GKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 419

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Canis familiaris (taxid: 9615)

>sp|Q28G88|FEZF2_XENTR Fez family zinc finger protein 2 OS=Xenopus tropicalis GN=fezf2 PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 69/106 (65%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C QCGK F RSSTL+TH+ IH+  +P+ C++CGK FHQK + K H   H+GEK +KC +C
Sbjct: 312 CNQCGKAFNRSSTLNTHIRIHAGYKPFVCEFCGKGFHQKGNYKNHKLTHSGEKQYKCTIC 371

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
            KAF Q  NL  H+  H   KPF+CG C K F R  DL++H    H
Sbjct: 372 NKAFHQIYNLTFHMHTHNDKKPFTCGTCGKGFCRNFDLKKHVRKLH 417

Transcription repressor. Component of the regulatory cascade that controls the development of dopaminergic (DA) and serotonergic (5HT) neurons.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
340724280	412	PREDICTED: zinc finger protein 643-like	0.828	0.269	0.945	6e-59
350420733	412	PREDICTED: zinc finger protein 643-like	0.828	0.269	0.945	7e-59
383852920	318	PREDICTED: zinc finger protein 91-like [	0.828	0.349	0.945	1e-58
345492505	448	PREDICTED: zinc finger and SCAN domain-c	0.828	0.247	0.945	4e-58
193622602	375	PREDICTED: zinc finger protein 726-like	0.895	0.32	0.876	1e-57
282165802	323	senseless [Tribolium castaneum] gi|27000	0.820	0.340	0.936	2e-57
321458861	524	putative GFI-Pag-sens-A protein [Daphnia	0.805	0.206	0.944	2e-57
157111598	540	zinc finger protein [Aedes aegypti] gi|1	0.932	0.231	0.823	5e-57
158287876	443	AGAP010926-PA [Anopheles gambiae str. PE	0.791	0.239	0.962	2e-56
357624641	365	senseless [Danaus plexippus]	0.791	0.290	0.971	7e-56

>gi|340724280|ref|XP_003400511.1| PREDICTED: zinc finger protein 643-like [Bombus terrestris]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 105/111 (94%), Positives = 107/111 (96%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CKQCGK FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC
Sbjct: 266 CKQCGKAFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 325

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPA 111
           GKAFSQSSNLITH+RKHTGYKPF CGLCDKAFQRKVDLRRHRE QHP +PA
Sbjct: 326 GKAFSQSSNLITHMRKHTGYKPFQCGLCDKAFQRKVDLRRHREGQHPAAPA 376

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420733|ref|XP_003492605.1| PREDICTED: zinc finger protein 643-like [Bombus impatiens]

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 105/111 (94%), Positives = 107/111 (96%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CKQCGK FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC
Sbjct: 266 CKQCGKAFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 325

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPA 111
           GKAFSQSSNLITH+RKHTGYKPF CGLCDKAFQRKVDLRRHRE QHP +PA
Sbjct: 326 GKAFSQSSNLITHMRKHTGYKPFQCGLCDKAFQRKVDLRRHREGQHPAAPA 376

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852920|ref|XP_003701973.1| PREDICTED: zinc finger protein 91-like [Megachile rotundata]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/111 (94%), Positives = 107/111 (96%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CKQCGK FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC
Sbjct: 172 CKQCGKAFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 231

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPA 111
           GKAFSQSSNLITH+RKHTGYKPF CGLCDKAFQRKVDLRRHRE QHP +PA
Sbjct: 232 GKAFSQSSNLITHMRKHTGYKPFECGLCDKAFQRKVDLRRHREGQHPAAPA 282

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492505|ref|XP_003426864.1| PREDICTED: zinc finger and SCAN domain-containing protein 12-like [Nasonia vitripennis]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/111 (94%), Positives = 107/111 (96%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CKQCGK FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC
Sbjct: 302 CKQCGKAFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 361

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPA 111
           GKAFSQSSNLITH+RKHTGYKPF CGLCDKAFQRKVDLRRHRE QHP +PA
Sbjct: 362 GKAFSQSSNLITHMRKHTGYKPFQCGLCDKAFQRKVDLRRHREGQHPTAPA 412

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193622602|ref|XP_001952342.1| PREDICTED: zinc finger protein 726-like [Acyrthosiphon pisum]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 115/121 (95%), Gaps = 1/121 (0%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CK C KTFKRSSTLSTHLLIHSDTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKCVVC
Sbjct: 200 CKLCYKTFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 259

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSP-AQQHHISST 119
            KAFSQSSNLITHLRKH+GY+PF CGLCD+AFQRKVDLR+HRE+ HPGSP AQQ+HI+ST
Sbjct: 260 LKAFSQSSNLITHLRKHSGYRPFPCGLCDRAFQRKVDLRKHRETMHPGSPAAQQYHITST 319

Query: 120 S 120
           +
Sbjct: 320 T 320

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282165802|ref|NP_001164138.1| senseless [Tribolium castaneum] gi|270008160|gb|EFA04608.1| senseless [Tribolium castaneum]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/110 (93%), Positives = 107/110 (97%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C+QCGK+FKRSSTL+THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC
Sbjct: 199 CQQCGKSFKRSSTLTTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 258

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSP 110
            KAFSQSSNLITH+RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHP  P
Sbjct: 259 SKAFSQSSNLITHMRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPSVP 308

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321458861|gb|EFX69922.1| putative GFI-Pag-sens-A protein [Daphnia pulex]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/108 (94%), Positives = 106/108 (98%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC+VC
Sbjct: 387 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCIVC 446

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
            KAFSQSSNLITH+RKHTGYKPF+CGLCDKAFQRKVDLRRHR+SQHP 
Sbjct: 447 SKAFSQSSNLITHMRKHTGYKPFACGLCDKAFQRKVDLRRHRDSQHPA 494

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111598|ref|XP_001651639.1| zinc finger protein [Aedes aegypti] gi|108883813|gb|EAT48038.1| AAEL000869-PA [Aedes aegypti]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 107/130 (82%), Positives = 113/130 (86%), Gaps = 5/130 (3%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC
Sbjct: 331 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 390

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH-----PGSPAQQHH 115
            KAFSQSSNLITH+RKH+GYKPFSCGLCDKAFQRKVDLRRHRE QH      GSP   + 
Sbjct: 391 LKAFSQSSNLITHMRKHSGYKPFSCGLCDKAFQRKVDLRRHREGQHGEIVGSGSPPNGNT 450

Query: 116 ISSTSMIETP 125
           + S    ++P
Sbjct: 451 LPSNDDYKSP 460

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287876|ref|XP_309767.4| AGAP010926-PA [Anopheles gambiae str. PEST] gi|157019399|gb|EAA05598.4| AGAP010926-PA [Anopheles gambiae str. PEST]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/106 (96%), Positives = 104/106 (98%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC
Sbjct: 329 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 388

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
            KAFSQSSNLITH+RKH+GYKPFSCGLCDKAFQRKVDLRRHRE QH
Sbjct: 389 LKAFSQSSNLITHMRKHSGYKPFSCGLCDKAFQRKVDLRRHREGQH 434

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624641|gb|EHJ75343.1| senseless [Danaus plexippus]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 103/106 (97%), Positives = 104/106 (98%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CKQCGK FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC
Sbjct: 228 CKQCGKCFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 287

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
            KAFSQSSNLITH+RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH
Sbjct: 288 SKAFSQSSNLITHMRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 333

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
WB|WBGene00003909	336	pag-3 [Caenorhabditis elegans	0.970	0.386	0.684	2.3e-48
FB|FBgn0002573	541	sens "senseless" [Drosophila m	0.820	0.203	0.781	1.6e-47
UNIPROTKB|O42409	337	GFI1B "Zinc finger protein Gfi	0.791	0.314	0.811	6.9e-47
FB|FBgn0051632	746	sens-2 "senseless-2" [Drosophi	0.791	0.142	0.811	1.7e-46
RGD|1311727	363	Gfi1b "growth factor independe	0.791	0.292	0.792	4.8e-46
MGI|MGI:1276578	330	Gfi1b "growth factor independe	0.791	0.321	0.792	4.8e-46
UNIPROTKB|Q5VTD9	330	GFI1B "Zinc finger protein Gfi	0.791	0.321	0.792	4.8e-46
UNIPROTKB|E2QYK0	327	GFI1B "Uncharacterized protein	0.791	0.324	0.792	4.8e-46
UNIPROTKB|F1S0S2	363	GFI1B "Uncharacterized protein	0.791	0.292	0.792	6.2e-46
UNIPROTKB|F1MWJ8	331	GFI1B "Uncharacterized protein	0.791	0.320	0.792	6.2e-46

WB|WBGene00003909 pag-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 89/130 (68%), Positives = 97/130 (74%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             CKQCGKTFKR            DTRPYPC+YCGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   156 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCEYCGKRFHQKSDMKKHTYIHTGEKPHKCTVC 215

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHISSTS 120
             GKAFSQSSNLITH RKHTG+KPF+C +C + FQRKVD RRHRES HPG P +    S  S
Sbjct:   216 GKAFSQSSNLITHTRKHTGFKPFACDVCGRTFQRKVDRRRHRESHHPGHPEECVSASQIS 275

Query:   121 MIETPESITT 130
                +P+   T
Sbjct:   276 SDLSPKGYMT 285

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IGI;IMP

GO:0045664 "regulation of neuron differentiation" evidence=IMP

GO:0014018 "neuroblast fate specification" evidence=IMP

GO:0043059 "regulation of forward locomotion" evidence=IMP

GO:0043058 "regulation of backward locomotion" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0046929 "negative regulation of neurotransmitter secretion" evidence=IMP

GO:0046676 "negative regulation of insulin secretion" evidence=IMP

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IMP

FB|FBgn0002573 sens "senseless" [Drosophila melanogaster (taxid:7227)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 86/110 (78%), Positives = 92/110 (83%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             CKQCGK+FKR            DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   415 CKQCGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCTVC 474

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSP 110
              KAFSQSSNLITH+RKHTGYKPF C LCD++FQRKVDLRRHRES+H  +P
Sbjct:   475 LKAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRESRHEEAP 524

GO:0007422 "peripheral nervous system development" evidence=NAS;IMP;TAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008594 "photoreceptor cell morphogenesis" evidence=IGI;IMP

GO:0045465 "R8 cell differentiation" evidence=IMP;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0045464 "R8 cell fate specification" evidence=NAS

GO:0042051 "compound eye photoreceptor development" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007423 "sensory organ development" evidence=IGI;IMP;TAS

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0043425 "bHLH transcription factor binding" evidence=IDA

GO:0016360 "sensory organ precursor cell fate determination" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

UNIPROTKB|O42409 GFI1B "Zinc finger protein Gfi-1b" [Gallus gallus (taxid:9031)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 86/106 (81%), Positives = 88/106 (83%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             CK CGKTFKR            DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   229 CKMCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 288

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
             GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRE+QH
Sbjct:   289 GKAFSQSSNLITHSRKHTGFKPFSCELCAKGFQRKVDLRRHRETQH 334

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

FB|FBgn0051632 sens-2 "senseless-2" [Drosophila melanogaster (taxid:7227)]

 Score = 491 (177.9 bits), Expect = 1.7e-46, P = 1.7e-46
 Identities = 86/106 (81%), Positives = 88/106 (83%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             CKQCGK FKR            DTRPYPC YCGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   566 CKQCGKRFKRSSTLSTHLLIHSDTRPYPCNYCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 625

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
             GKAFSQSSNLITH RKHTGYKPFSC LC KAFQRKVDLRRH+E+QH
Sbjct:   626 GKAFSQSSNLITHSRKHTGYKPFSCKLCHKAFQRKVDLRRHKETQH 671

GO:0005634 "nucleus" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1311727 Gfi1b "growth factor independent 1B transcription repressor" [Rattus norvegicus (taxid:10116)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 84/106 (79%), Positives = 87/106 (82%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             C+ CGK FKR            DTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   255 CRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 314

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
             GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRESQH
Sbjct:   315 GKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQH 360

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=ISO

GO:0030854 "positive regulation of granulocyte differentiation" evidence=ISO

GO:0045646 "regulation of erythrocyte differentiation" evidence=ISO

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=ISO

GO:0051574 "positive regulation of histone H3-K9 methylation" evidence=ISO

MGI|MGI:1276578 Gfi1b "growth factor independent 1B" [Mus musculus (taxid:10090)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 84/106 (79%), Positives = 87/106 (82%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             C+ CGK FKR            DTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   222 CRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 281

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
             GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRESQH
Sbjct:   282 GKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQH 327

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=ISO

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IDA

GO:0045646 "regulation of erythrocyte differentiation" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=IMP

GO:0051574 "positive regulation of histone H3-K9 methylation" evidence=IMP

UNIPROTKB|Q5VTD9 GFI1B "Zinc finger protein Gfi-1b" [Homo sapiens (taxid:9606)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 84/106 (79%), Positives = 87/106 (82%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             C+ CGK FKR            DTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   222 CRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 281

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
             GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRESQH
Sbjct:   282 GKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQH 327

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

GO:0005667 "transcription factor complex" evidence=IDA

UNIPROTKB|E2QYK0 GFI1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 84/106 (79%), Positives = 87/106 (82%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             C+ CGK FKR            DTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   219 CRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 278

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
             GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRESQH
Sbjct:   279 GKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRHRESQH 324

GO:0016363 "nuclear matrix" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1S0S2 GFI1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 84/106 (79%), Positives = 87/106 (82%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             C+ CGK FKR            DTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   255 CRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 314

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
             GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRESQH
Sbjct:   315 GKAFSQSSNLITHSRKHTGFKPFSCELCAKGFQRKVDLRRHRESQH 360

GO:0016363 "nuclear matrix" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MWJ8 GFI1B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 84/106 (79%), Positives = 87/106 (82%)

Query:     1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
             C+ CGK FKR            DTRPYPCQ+CGKRFHQKSDMKKHTYIHTGEKPHKC VC
Sbjct:   223 CRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVC 282

Query:    61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
             GKAFSQSSNLITH RKHTG+KPFSC LC K FQRKVDLRRHRESQH
Sbjct:   283 GKAFSQSSNLITHSRKHTGFKPFSCELCAKGFQRKVDLRRHRESQH 328

GO:0016363 "nuclear matrix" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5VTD9	GFI1B_HUMAN	No assigned EC number	0.9056	0.7835	0.3181	no	N/A
O70237	GFI1B_MOUSE	No assigned EC number	0.9056	0.7835	0.3181	no	N/A
O42409	GFI1B_CHICK	No assigned EC number	0.9245	0.7835	0.3115	yes	N/A
Q9N658	GFI1_DROME	No assigned EC number	0.8909	0.8208	0.2033	yes	N/A
Q6DCW1	GFI1B_XENLA	No assigned EC number	0.9150	0.7835	0.3061	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	0.002

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 15/26 (57%), Positives = 21/26 (80%)

Query: 41 DMKKHTYIHTGEKPHKCVVCGKAFSQ 66
          ++++H   HTGEKP+KC VCGK+FS 
Sbjct: 1  NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.95
KOG1074|consensus	958		99.8
KOG3576|consensus	267		99.75
KOG3623|consensus	1007		99.71
KOG1074|consensus	958		99.7
KOG3623|consensus	1007		99.65
KOG3576|consensus	267		99.63
KOG3608|consensus	467		99.58
KOG3608|consensus	467		99.55
PLN03086	567	PRLI-interacting factor K; Provisional	99.43
PHA00733	128	hypothetical protein	99.42
PHA02768	55	hypothetical protein; Provisional	99.12
KOG3993|consensus	500		99.06
PHA00733	128	hypothetical protein	99.06
PLN03086	567	PRLI-interacting factor K; Provisional	99.0
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.98
PHA02768	55	hypothetical protein; Provisional	98.9
PHA00616	44	hypothetical protein	98.77
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.76
KOG3993|consensus	500		98.73
PHA00732	79	hypothetical protein	98.56
PHA00616	44	hypothetical protein	98.48
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.41
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.39
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.29
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.21
PHA00732	79	hypothetical protein	98.17
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.14
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.07
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.98
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.94
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.76
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.7
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.7
smart00355	26	ZnF_C2H2 zinc finger.	97.65
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.61
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.47
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.45
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.19
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.15
PRK04860	160	hypothetical protein; Provisional	97.07
smart00355	26	ZnF_C2H2 zinc finger.	96.99
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.96
COG4049	65	Uncharacterized protein containing archaeal-type C	96.83
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.51
KOG1146|consensus	1406		96.38
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.17
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.12
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.91
KOG2231|consensus	669		95.89
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.85
PRK04860	160	hypothetical protein; Provisional	95.7
KOG1146|consensus	1406		95.19
KOG2785|consensus	390		94.98
KOG4173|consensus	253		94.9
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	94.82
KOG2231|consensus	669		94.76
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	94.36
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	93.94
KOG2186|consensus	276		93.83
KOG4173|consensus	253		93.37
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.88
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.78
COG5189	423	SFP1 Putative transcriptional repressor regulating	92.71
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	92.58
KOG2893|consensus	341		92.45
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	92.42
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	92.21
COG5048	467	FOG: Zn-finger [General function prediction only]	91.98
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	91.85
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	91.81
COG4049	65	Uncharacterized protein containing archaeal-type C	91.59
COG1592	166	Rubrerythrin [Energy production and conversion]	91.57
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	91.44
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.15
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	91.12
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	90.5
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	90.19
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.15
KOG2893|consensus	341		90.06
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.05
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	89.48
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	89.32
PRK06266	178	transcription initiation factor E subunit alpha; V	89.19
KOG2807|consensus	378		88.82
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	88.57
smart00531	147	TFIIE Transcription initiation factor IIE.	88.52
KOG2482|consensus	423		88.48
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	87.98
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	87.79
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	87.72
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	87.61
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	87.31
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	87.23
PRK06266	178	transcription initiation factor E subunit alpha; V	87.15
smart00531	147	TFIIE Transcription initiation factor IIE.	86.68
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	86.25
PHA00626	59	hypothetical protein	86.09
KOG2186|consensus	276		85.97
KOG2482|consensus	423		85.83
COG5048	467	FOG: Zn-finger [General function prediction only]	84.98
PF12907	40	zf-met2: Zinc-binding	83.83
COG1198	730	PriA Primosomal protein N' (replication factor Y)	83.75
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	83.67
KOG2785|consensus	390		82.99
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	82.9
PRK04023	1121	DNA polymerase II large subunit; Validated	82.24
COG5151	421	SSL1 RNA polymerase II transcription initiation/nu	81.97
COG3357	97	Predicted transcriptional regulator containing an	80.56

>KOG2462|consensus

Probab=99.96  E-value=2.4e-29  Score=159.02  Aligned_cols=116  Identities=40%  Similarity=0.760  Sum_probs=93.3

Q ss_pred             CCcCccccCChHHHHHHHHHcCC---CCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHc
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSD---TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~---~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      |++||+.+.+.++|..|.++|-.   .+.+.|++|++.+.+...|.+|+++|.  -+.+|.+||+.|.+++.|+.|+++|
T Consensus       133 c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTH  210 (279)
T KOG2462|consen  133 CPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTH  210 (279)
T ss_pred             ccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccc
Confidence            67888888888888888887743   455788888888888888888888776  4678888888888888888888888


Q ss_pred             CCCCCcccCcchhhccChHHHHHHHHhhCCCCCCcccccCC
Q psy2643          78 TGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHISS  118 (134)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~  118 (134)
                      +|||||.|+.|+|+|+++++|+.||++|...+.+++.....
T Consensus       211 TGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~K  251 (279)
T KOG2462|consen  211 TGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGK  251 (279)
T ss_pred             cCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhh
Confidence            88888888888888888888888888888888877665443

>KOG2462|consensus

Probab=99.95  E-value=2.2e-28  Score=154.65  Aligned_cols=104  Identities=40%  Similarity=0.762  Sum_probs=99.7

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |..||++|.....|..|+++|+  .+..|.+||+.|...+-|+.|+++|+|++||.|+.|++.|.+.++|+.|+++|.+.
T Consensus       164 C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~  241 (279)
T KOG2462|consen  164 CKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDV  241 (279)
T ss_pred             CCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCC
Confidence            8899999999999999999997  57999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCcchhhccChHHHHHHHHhhC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      |.|+|..|+|.|+..+.|.+|.....
T Consensus       242 K~~qC~~C~KsFsl~SyLnKH~ES~C  267 (279)
T KOG2462|consen  242 KKHQCPRCGKSFALKSYLNKHSESAC  267 (279)
T ss_pred             ccccCcchhhHHHHHHHHHHhhhhcc
Confidence            99999999999999999999986543

>KOG1074|consensus

Probab=99.80  E-value=1.3e-20  Score=134.11  Aligned_cols=58  Identities=36%  Similarity=0.792  Sum_probs=52.6

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      -.|.+|.++..-...|+.|.++|+||+||+|.+||++|+++.+|+.|+..|-...+..
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R  663 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPAR  663 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCcccc
Confidence            3799999999999999999999999999999999999999999999998776655443

>KOG3576|consensus

Probab=99.75  E-value=2.4e-19  Score=109.47  Aligned_cols=112  Identities=40%  Similarity=0.712  Sum_probs=98.6

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcC--
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT--   78 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~--   78 (134)
                      |..|++.|.....|..|++.|...+.+.|-.||+.|.....|.+|.+.|++-+||+|..|++.|...-.|..|++.-+  
T Consensus       120 CrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv  199 (267)
T KOG3576|consen  120 CRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGV  199 (267)
T ss_pred             eehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCc
Confidence            788999999999999999999999999999999999999999999999999999999999999999999999987433  


Q ss_pred             ---------CCCCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          79 ---------GYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        79 ---------~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                               .++.|.|..||.+-.....+..|++.+|+..++-
T Consensus       200 ~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spal  242 (267)
T KOG3576|consen  200 QHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPAL  242 (267)
T ss_pred             hHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHHH
Confidence                     3567999999988888888889999999887663

>KOG3623|consensus

Probab=99.71  E-value=3.1e-18  Score=120.94  Aligned_cols=105  Identities=31%  Similarity=0.698  Sum_probs=93.7

Q ss_pred             CCcCccccCChHHHHHHHHHcCC--CCCccCcccccccCChhhHHHHHHhhcC-------------CCceeccccccccC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSD--TRPYPCQYCGKRFHQKSDMKKHTYIHTG-------------EKPHKCVVCGKAFS   65 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~--~~~~~c~~C~~~~~~~~~l~~h~~~~~~-------------~~~~~C~~C~~~~~   65 (134)
                      |++|.+.+.....|+.|++..+.  +..|.|+.|..+|.....|.+|+..|..             -+.|+|..|++.|.
T Consensus       213 cpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFK  292 (1007)
T KOG3623|consen  213 CPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFK  292 (1007)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhh
Confidence            78999999999999999977543  3458999999999999999999988753             34599999999999


Q ss_pred             ChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhh
Q psy2643          66 QSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        66 ~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      .+-.|+.|+++|.|||||.|+.|+|.|+...++..||..+
T Consensus       293 fKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  293 FKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             hHHHHHhhheeecCCCCcCCcccccccccCCccccccccc
Confidence            9999999999999999999999999999999999998544

>KOG1074|consensus

Probab=99.70  E-value=1.3e-17  Score=119.09  Aligned_cols=59  Identities=41%  Similarity=0.767  Sum_probs=55.7

Q ss_pred             eccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCccc
Q psy2643          56 KCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        56 ~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  114 (134)
                      .|.+|++.|...+.|..|+++|+++|+|.|..|++.|..+..|+.||.+|+-..+....
T Consensus       881 ~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr  939 (958)
T KOG1074|consen  881 VCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR  939 (958)
T ss_pred             hhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence            69999999999999999999999999999999999999999999999999888877654

>KOG3623|consensus

Probab=99.65  E-value=6e-17  Score=114.55  Aligned_cols=80  Identities=36%  Similarity=0.828  Sum_probs=76.6

Q ss_pred             CCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHH
Q psy2643          24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        24 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      ...|.|..|+++|.-.+.|.+|...|.|++||.|.+|.+.|..+-.|..|.+.|.|||||+|..|+|.|+...++..||.
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999999999985

>KOG3576|consensus

Probab=99.63  E-value=6.2e-17  Score=98.99  Aligned_cols=86  Identities=35%  Similarity=0.789  Sum_probs=80.9

Q ss_pred             CCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHH
Q psy2643          24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        24 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      ...+.|.+|++.|....-|.+|+.-|...+.+-|..||+.|.+--+|++|+++|+|.+||+|..|+|+|+.+-+|..|.+
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            44589999999999999999999999998999999999999999999999999999999999999999999999999998


Q ss_pred             hhCCCC
Q psy2643         104 SQHPGS  109 (134)
Q Consensus       104 ~~h~~~  109 (134)
                      ..|+..
T Consensus       195 kvhgv~  200 (267)
T KOG3576|consen  195 KVHGVQ  200 (267)
T ss_pred             HHcCch
Confidence            888765

>KOG3608|consensus

Probab=99.58  E-value=2.5e-15  Score=98.81  Aligned_cols=115  Identities=30%  Similarity=0.535  Sum_probs=77.3

Q ss_pred             cCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcC--C--------------------------Cc
Q psy2643           3 QCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTG--E--------------------------KP   54 (134)
Q Consensus         3 ~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~--~--------------------------~~   54 (134)
                      .|-+.|.++..|+.|+++|++++-..|+.||.-|.....|--|++-.+.  .                          .-
T Consensus       184 ~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~  263 (467)
T KOG3608|consen  184 MCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNC  263 (467)
T ss_pred             hhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhc
Confidence            3556777777788888777777776677776666666555555543221  1                          23


Q ss_pred             eeccccccccCChhHHHHHHHH-cCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCcccccCC
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRK-HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHISS  118 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~-~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~  118 (134)
                      |+|++|.-+....+.|..|++. |..++||+|..|.+.|...++|.+|...| ++.-+++.....
T Consensus       264 ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~H-S~~~y~C~h~~C  327 (467)
T KOG3608|consen  264 YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVH-SKTVYQCEHPDC  327 (467)
T ss_pred             ccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhc-cccceecCCCCC
Confidence            6777777777777777777764 66778888888888888888888887744 455555544433

>KOG3608|consensus

Probab=99.55  E-value=2.2e-14  Score=94.45  Aligned_cols=110  Identities=26%  Similarity=0.534  Sum_probs=78.6

Q ss_pred             CCcCccccCChHHHHHHHHH-cCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc--cccccCChhHHHHHHHHc
Q psy2643           1 CKQCGKTFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKH   77 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~-~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~~~~~~~l~~h~~~~   77 (134)
                      |+.|+.+.+..+.|..|++. |...+||.|..|+..+...+.|++|...|. +..|.|..  |...+.....+.+|.+.+
T Consensus       266 CplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~ev  344 (467)
T KOG3608|consen  266 CPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEV  344 (467)
T ss_pred             ccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHh
Confidence            66777777777777777765 455667777777777777777777776544 55677766  777777777777776653


Q ss_pred             C-C--CCCcccCcchhhccChHHHHHHHHhhCCCCCC
Q psy2643          78 T-G--YKPFSCGLCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        78 ~-~--~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      + |  +.+|.|..|.+.|++-.+|.+|.+..|+-+.+
T Consensus       345 hEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~P  381 (467)
T KOG3608|consen  345 HEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLP  381 (467)
T ss_pred             ccCCCCCceeeecchhhhccchhHHHHHHHhhcccCC
Confidence            3 3  34588888888888888888888777766544

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.43  E-value=7.7e-13  Score=93.28  Aligned_cols=101  Identities=22%  Similarity=0.547  Sum_probs=82.1

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCC----------hhHH
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQ----------SSNL   70 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~----------~~~l   70 (134)
                      |+.|++.|. ...|..|+..++  +++.|+ |+..+ ....|..|+..+...+++.|..|+..+..          ...|
T Consensus       456 C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~L  530 (567)
T PLN03086        456 CEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGM  530 (567)
T ss_pred             CCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhH
Confidence            789999886 577999999875  688999 99755 55779999999999999999999988842          3478


Q ss_pred             HHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          71 ITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        71 ~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ..|.... +.+++.|..||+.+..+ .+..|+...|..
T Consensus       531 t~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        531 SEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             HHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhhcC
Confidence            8888874 88999999999887654 678898777653

>PHA00733 hypothetical protein

Probab=99.42  E-value=2.7e-13  Score=79.35  Aligned_cols=84  Identities=18%  Similarity=0.253  Sum_probs=70.5

Q ss_pred             CCCCccCcccccccCChhhHHHH--H---HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHH
Q psy2643          23 DTRPYPCQYCGKRFHQKSDMKKH--T---YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVD   97 (134)
Q Consensus        23 ~~~~~~c~~C~~~~~~~~~l~~h--~---~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~   97 (134)
                      .++++.|.+|+..|.....|..+  +   ...++.++|.|..|+..|.....|..|++.+  +.+|.|+.|++.|.....
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHH
Confidence            35678999999888887666555  1   1334578999999999999999999999976  457999999999999999


Q ss_pred             HHHHHHhhCCC
Q psy2643          98 LRRHRESQHPG  108 (134)
Q Consensus        98 l~~H~~~~h~~  108 (134)
                      |.+|+...|+.
T Consensus       115 L~~H~~~~h~~  125 (128)
T PHA00733        115 TLDHVCKKHNI  125 (128)
T ss_pred             HHHHHHHhcCc
Confidence            99999998874

>PHA02768 hypothetical protein; Provisional

Probab=99.12  E-value=2.9e-11  Score=59.45  Aligned_cols=44  Identities=27%  Similarity=0.580  Sum_probs=36.2

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHH
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLR   99 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~   99 (134)
                      .|.|+.||+.|.....|..|+++|+  ++|+|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            3788888888888888888888887  6788888998888776653

>KOG3993|consensus

Probab=99.06  E-value=4.1e-11  Score=80.86  Aligned_cols=50  Identities=22%  Similarity=0.482  Sum_probs=38.3

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhc
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHT   50 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~   50 (134)
                      |..|...|.+.-.|.+|....+....|.|++|++.|.-..+|..|++.|.
T Consensus       270 CqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  270 CQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHK  319 (500)
T ss_pred             HHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccC
Confidence            56777777777778888776666677888888888888888888877664

>PHA00733 hypothetical protein

Probab=99.06  E-value=2.8e-10  Score=66.68  Aligned_cols=77  Identities=25%  Similarity=0.472  Sum_probs=60.0

Q ss_pred             CCcCccccCChHHHHHH--H---HHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHH
Q psy2643           1 CKQCGKTFKRSSTLSTH--L---LIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h--~---~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      |.+|++.|.....|..+  +   ..+.+.++|.|+.|++.|.....|..|++.+  ..+|.|..|++.|.....|..|+.
T Consensus        43 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~  120 (128)
T PHA00733         43 RAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVC  120 (128)
T ss_pred             HHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHH
Confidence            45566666666555544  1   2334578999999999999999999998865  357999999999999999999988


Q ss_pred             HcCC
Q psy2643          76 KHTG   79 (134)
Q Consensus        76 ~~~~   79 (134)
                      ..++
T Consensus       121 ~~h~  124 (128)
T PHA00733        121 KKHN  124 (128)
T ss_pred             HhcC
Confidence            6543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.00  E-value=7e-10  Score=78.66  Aligned_cols=84  Identities=20%  Similarity=0.523  Sum_probs=68.0

Q ss_pred             CCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccC----------
Q psy2643          25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQR----------   94 (134)
Q Consensus        25 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~----------   94 (134)
                      +.+.|+.|+..|. ...|..|+..++  .++.|+ |+..+ ....|..|+..|...+++.|+.|++.|..          
T Consensus       452 ~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~  526 (567)
T PLN03086        452 NHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDR  526 (567)
T ss_pred             cCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhh
Confidence            3468999999996 567999999875  789999 99765 56899999999999999999999998852          


Q ss_pred             hHHHHHHHHhhCCCCCCccc
Q psy2643          95 KVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        95 ~~~l~~H~~~~h~~~~~~~~  114 (134)
                      .+.|..|... .+..+..+.
T Consensus       527 ~s~Lt~HE~~-CG~rt~~C~  545 (567)
T PLN03086        527 LRGMSEHESI-CGSRTAPCD  545 (567)
T ss_pred             hhhHHHHHHh-cCCcceEcc
Confidence            4589999887 477666653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.98  E-value=3.2e-10  Score=47.96  Aligned_cols=26  Identities=50%  Similarity=1.031  Sum_probs=21.0

Q ss_pred             HHHHHHHHcCCCCCcccCcchhhccC
Q psy2643          69 NLITHLRKHTGYKPFSCGLCDKAFQR   94 (134)
Q Consensus        69 ~l~~h~~~~~~~~~~~C~~C~~~f~~   94 (134)
                      +|..|++.|.++++|.|+.|++.|++
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            46788888888888888888888863

...

>PHA02768 hypothetical protein; Provisional

Probab=98.90  E-value=8.8e-10  Score=54.27  Aligned_cols=42  Identities=21%  Similarity=0.461  Sum_probs=29.4

Q ss_pred             CccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhH
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSN   69 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~   69 (134)
                      .|.|+.||+.|.....|..|++.|.  ++++|..|++.|...+.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~   46 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGE   46 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccce
Confidence            3677777777777777777777766  56777777777665544

>PHA00616 hypothetical protein

Probab=98.77  E-value=5.6e-09  Score=49.03  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=24.7

Q ss_pred             CcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      ||+|+.||+.|.+.++|.+|++.+|++++..
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~   31 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLT   31 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence            5788888888888888888888888887653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.76  E-value=5.8e-09  Score=44.05  Aligned_cols=24  Identities=46%  Similarity=1.132  Sum_probs=15.4

Q ss_pred             HHHHHHHcCCCCCccCcccccccC
Q psy2643          14 LSTHLLIHSDTRPYPCQYCGKRFH   37 (134)
Q Consensus        14 l~~h~~~~~~~~~~~c~~C~~~~~   37 (134)
                      |..|+++|+++++|.|+.|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            556666666666666666666654

...

>KOG3993|consensus

Probab=98.73  E-value=2.9e-09  Score=72.17  Aligned_cols=86  Identities=30%  Similarity=0.582  Sum_probs=72.1

Q ss_pred             ccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcC----------------------------
Q psy2643          27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT----------------------------   78 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~----------------------------   78 (134)
                      |+|..|...|.....|.+|.-.-.....|+|+.|+++|.-..+|..|.+=|.                            
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            8999999999999999999765555567999999999999999999987442                            


Q ss_pred             -----CCCCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          79 -----GYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        79 -----~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                           .+..|.|..|+|.|.....|+.|+.+|+......
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k  386 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK  386 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence                 1225999999999999999999998887655443

>PHA00732 hypothetical protein

Probab=98.56  E-value=5.1e-08  Score=52.26  Aligned_cols=37  Identities=27%  Similarity=0.584  Sum_probs=18.7

Q ss_pred             ccCcccccccCChhhHHHHHHhhcCCCceeccccccccC
Q psy2643          27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFS   65 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~   65 (134)
                      |.|..|++.|.....|..|++.++.  ++.|..|++.|.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~   38 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR   38 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC
Confidence            4555555555555555555542211  234555555554

>PHA00616 hypothetical protein

Probab=98.48  E-value=9.5e-08  Score=44.90  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=15.9

Q ss_pred             ccCcccccccCChhhHHHHHHhhcCCCceecc
Q psy2643          27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCV   58 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   58 (134)
                      +.|+.||+.|...++|..|++.+++++++.|+
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            44555555555555555555555555444443

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.41  E-value=1.8e-07  Score=38.22  Aligned_cols=22  Identities=36%  Similarity=0.925  Sum_probs=18.0

Q ss_pred             cccCcchhhccChHHHHHHHHh
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRES  104 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      |.|+.|++.|.....|.+|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5788888888888888888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.39  E-value=8.8e-07  Score=44.15  Aligned_cols=50  Identities=34%  Similarity=0.582  Sum_probs=32.7

Q ss_pred             eeccccccccCChhHHHHHHHH-cCCC-CCcccCcchhhccChHHHHHHHHhhCC
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRK-HTGY-KPFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~-~~~~-~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      |.|+.|++ ..+...|..|... |..+ +.+.||.|...+.  .+|.+|+...|+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            67777777 4556677777664 4332 4577888876543  477788877663

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.29  E-value=6.1e-07  Score=36.83  Aligned_cols=24  Identities=42%  Similarity=1.007  Sum_probs=17.7

Q ss_pred             cccCcchhhccChHHHHHHHHhhC
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      |.|+.|++.|.+...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            578888888888888888887765

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.21  E-value=4e-06  Score=41.78  Aligned_cols=50  Identities=30%  Similarity=0.622  Sum_probs=33.3

Q ss_pred             CccCcccccccCChhhHHHHHHhhcC--CCceeccccccccCChhHHHHHHHHcC
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTYIHTG--EKPHKCVVCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~~~~~--~~~~~C~~C~~~~~~~~~l~~h~~~~~   78 (134)
                      .|.||+|++ ..+...|..|....+.  .+.+.|++|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            467888888 4455668888766543  24577888887544  37777877644

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.17  E-value=1.9e-06  Score=46.23  Aligned_cols=36  Identities=33%  Similarity=0.717  Sum_probs=17.0

Q ss_pred             eeccccccccCChhHHHHHHHH-cCCCCCcccCcchhhcc
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRK-HTGYKPFSCGLCDKAFQ   93 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~-~~~~~~~~C~~C~~~f~   93 (134)
                      |.|..|++.|.....|..|++. |.   ++.|+.|++.|.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~   38 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR   38 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC
Confidence            4455555555555555555442 22   134555555554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.14  E-value=1.4e-06  Score=36.96  Aligned_cols=26  Identities=38%  Similarity=0.811  Sum_probs=19.5

Q ss_pred             CcccCcchhhccChHHHHHHHHhhCC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      +|.|..|++.|.+...|..|++.+++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            46788888888888888888776653

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.07  E-value=3.8e-06  Score=47.05  Aligned_cols=73  Identities=27%  Similarity=0.539  Sum_probs=19.1

Q ss_pred             CcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhC
Q psy2643          29 CQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        29 c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      |..|+..|.+...+..|+...++-..   . ....+.....+..+++.. ....+.|..|++.|.+...|..|++.++
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~---~-~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDI---P-DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             ----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccc---c-cccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            56666666666666666655443211   0 001111222232333221 1225788888888888888888887653

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.98  E-value=1.3e-06  Score=57.75  Aligned_cols=26  Identities=35%  Similarity=0.810  Sum_probs=22.8

Q ss_pred             CCCCCcccCcchhhccChHHHHHHHH
Q psy2643          78 TGYKPFSCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      ..+|||+|++|+|.|.....|+-|+.
T Consensus       394 ~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         394 AKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ccCCceeccccchhhccCccceeccc
Confidence            34689999999999999999988864

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.94  E-value=8.3e-06  Score=33.12  Aligned_cols=22  Identities=55%  Similarity=1.053  Sum_probs=12.7

Q ss_pred             eeccccccccCChhHHHHHHHH
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      |.|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4555666666666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.76  E-value=2.6e-05  Score=43.57  Aligned_cols=72  Identities=18%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHc
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      |..|+..|.....|..|+...++...   +. ...+.....+....... ....+.|..|+..|.+...|..|++.+
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~---~~-~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDI---PD-QKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccc---cc-ccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            78999999999999999976554321   11 11111222233333222 223699999999999999999999964

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.70  E-value=4.1e-05  Score=36.90  Aligned_cols=33  Identities=30%  Similarity=0.643  Sum_probs=21.4

Q ss_pred             CCCCCcccCcchhhccChHHHHHHHHhhCCCCC
Q psy2643          78 TGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSP  110 (134)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (134)
                      ..+.|-.||.|+..+.+..+|++|+...|..++
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            345678888888888888888888888887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.70  E-value=4.1e-05  Score=31.10  Aligned_cols=23  Identities=43%  Similarity=0.985  Sum_probs=12.3

Q ss_pred             eeccccccccCChhHHHHHHHHc
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      |.|+.|+..|.....|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45666666666666666665543

...

>smart00355 ZnF_C2H2 zinc finger

Probab=97.65  E-value=5.9e-05  Score=31.14  Aligned_cols=23  Identities=30%  Similarity=0.748  Sum_probs=17.8

Q ss_pred             cccCcchhhccChHHHHHHHHhh
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46888888888888888887743

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.61  E-value=5.2e-05  Score=31.98  Aligned_cols=24  Identities=50%  Similarity=0.870  Sum_probs=16.3

Q ss_pred             ceeccccccccCChhHHHHHHHHc
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      +|.|..|+..|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            356777777777777777776654

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.47  E-value=6.9e-05  Score=30.69  Aligned_cols=24  Identities=33%  Similarity=0.800  Sum_probs=15.5

Q ss_pred             cccCcchhhccChHHHHHHHHhhCC
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      |+|+.|+.... ...|.+|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            56777777666 7777777776653

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.45  E-value=7.9e-05  Score=30.79  Aligned_cols=22  Identities=41%  Similarity=0.917  Sum_probs=15.6

Q ss_pred             cccCcchhhccChHHHHHHHHh
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRES  104 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      |.|..|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4577777777777777777654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.19  E-value=0.00012  Score=30.88  Aligned_cols=22  Identities=41%  Similarity=0.841  Sum_probs=17.3

Q ss_pred             cccCcchhhccChHHHHHHHHh
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRES  104 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888754

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.15  E-value=0.00055  Score=33.08  Aligned_cols=29  Identities=38%  Similarity=0.623  Sum_probs=12.3

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      .|-.|++|+..+....+|.+|+...++.+
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            34455555555555555555555444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=97.07  E-value=0.00041  Score=42.34  Aligned_cols=38  Identities=24%  Similarity=0.537  Sum_probs=32.0

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccCh
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRK   95 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~   95 (134)
                      +|.|. |+.   ....+..|.+++.++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            58898 887   455788999999999999999999988654

>smart00355 ZnF_C2H2 zinc finger

Probab=96.99  E-value=0.00089  Score=27.36  Aligned_cols=21  Identities=43%  Similarity=0.898  Sum_probs=11.3

Q ss_pred             eccccccccCChhHHHHHHHH
Q psy2643          56 KCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus        56 ~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      .|..|+..|.....+..|++.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHH
Confidence            455555555555555555553

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.96  E-value=0.0006  Score=28.03  Aligned_cols=22  Identities=41%  Similarity=0.810  Sum_probs=15.9

Q ss_pred             eeccccccccCChhHHHHHHHH
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      |.|.+|+..|.+...+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5677777777777777777664

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=96.83  E-value=0.00061  Score=33.43  Aligned_cols=32  Identities=28%  Similarity=0.502  Sum_probs=27.0

Q ss_pred             cCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      -.||.-+.||.|+..|.+..++.+|+...|+-
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~   43 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW   43 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence            45677899999999999999999999777653

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.51  E-value=0.0024  Score=25.95  Aligned_cols=22  Identities=45%  Similarity=0.739  Sum_probs=12.6

Q ss_pred             eeccccccccCChhHHHHHHHHc
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      |.|+.|+.... ...|..|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            45666666665 66666666654

>KOG1146|consensus

Probab=96.38  E-value=0.00096  Score=52.11  Aligned_cols=87  Identities=23%  Similarity=0.465  Sum_probs=60.9

Q ss_pred             CCCccCcccccccCChhhHHHHHHhhc-------------------------CCCceeccccccccCChhHHHHHHHH--
Q psy2643          24 TRPYPCQYCGKRFHQKSDMKKHTYIHT-------------------------GEKPHKCVVCGKAFSQSSNLITHLRK--   76 (134)
Q Consensus        24 ~~~~~c~~C~~~~~~~~~l~~h~~~~~-------------------------~~~~~~C~~C~~~~~~~~~l~~h~~~--   76 (134)
                      .+.+.|+.|++.|+....|..|++..+                         +.++|.|..|...+....+|..|++.  
T Consensus       463 ~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~  542 (1406)
T KOG1146|consen  463 FKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDL  542 (1406)
T ss_pred             cccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHh
Confidence            355777777777777777777777622                         24467888888888888888888753  


Q ss_pred             cC----------C-------------------------------CCCcccCcchhhccChHHHHHHHHhhCCCCC
Q psy2643          77 HT----------G-------------------------------YKPFSCGLCDKAFQRKVDLRRHRESQHPGSP  110 (134)
Q Consensus        77 ~~----------~-------------------------------~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (134)
                      |.          +                               .-.|.|..|++--.-..+|+.|+..-+...+
T Consensus       543 h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~  617 (1406)
T KOG1146|consen  543 HRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSP  617 (1406)
T ss_pred             hHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCC
Confidence            11          0                               0148999999877777788888866655555

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.17  E-value=0.004  Score=27.72  Aligned_cols=24  Identities=25%  Similarity=0.701  Sum_probs=18.0

Q ss_pred             CcccCcchhhccChHHHHHHHHhh
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      +|.|..|++.|.+...+..|+...
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            467888888888888888887543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.12  E-value=0.005  Score=25.40  Aligned_cols=19  Identities=26%  Similarity=0.793  Sum_probs=11.6

Q ss_pred             ccCcchhhccChHHHHHHHH
Q psy2643          84 SCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~  103 (134)
                      .|+.||+.| ....|.+|++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            566666666 4555666654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.91  E-value=0.0019  Score=27.12  Aligned_cols=21  Identities=33%  Similarity=0.694  Sum_probs=13.4

Q ss_pred             eeccccccccCChhHHHHHHH
Q psy2643          55 HKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      |.|..|++.|.+...+..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            556667766766666665554

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231|consensus

Probab=95.89  E-value=0.025  Score=41.93  Aligned_cols=96  Identities=21%  Similarity=0.407  Sum_probs=45.5

Q ss_pred             ccCChHHHHHHHHHcCCCCCccCcccc---------cccCChhhHHHHHHhhcC-CC----ceeccccccccCChhHHHH
Q psy2643           7 TFKRSSTLSTHLLIHSDTRPYPCQYCG---------KRFHQKSDMKKHTYIHTG-EK----PHKCVVCGKAFSQSSNLIT   72 (134)
Q Consensus         7 ~f~~~~~l~~h~~~~~~~~~~~c~~C~---------~~~~~~~~l~~h~~~~~~-~~----~~~C~~C~~~~~~~~~l~~   72 (134)
                      .|.....|+.|+...+.  .+.|..|-         ...-....|+.|++.-.. ++    .-.|..|...|.....+..
T Consensus       123 ~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~r  200 (669)
T KOG2231|consen  123 EFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYR  200 (669)
T ss_pred             chhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHH
Confidence            33466788888854332  12333331         111223345555543221 11    1245666666666666666


Q ss_pred             HHHHcCCCCCcccCcc------hhhccChHHHHHHHHhhCCC
Q psy2643          73 HLRKHTGYKPFSCGLC------DKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C------~~~f~~~~~l~~H~~~~h~~  108 (134)
                      |++.++    |.|..|      +..|.....|..|.+..|-.
T Consensus       201 H~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~Hfl  238 (669)
T KOG2231|consen  201 HLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFL  238 (669)
T ss_pred             hhccce----eheeecCcccccchhcccchHHHHHhhhcCcc
Confidence            666432    222222      23444455555555555443

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.85  E-value=0.0056  Score=27.06  Aligned_cols=24  Identities=29%  Similarity=0.862  Sum_probs=15.5

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      |.|..||..+....            .++.||.||.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            66777777654432            5577777774

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK04860 hypothetical protein; Provisional

Probab=95.70  E-value=0.0083  Score=36.70  Aligned_cols=38  Identities=26%  Similarity=0.761  Sum_probs=31.5

Q ss_pred             CccCcccccccCChhhHHHHHHhhcCCCceeccccccccCCh
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQS   67 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~   67 (134)
                      +|.|. |+.   ....+..|.+.+.++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            37887 877   455688999999999999999999887654

>KOG1146|consensus

Probab=95.19  E-value=0.007  Score=47.65  Aligned_cols=105  Identities=19%  Similarity=0.338  Sum_probs=78.3

Q ss_pred             CCcCccccCChHHHHHHHHHc-------------------------CCCCCccCcccccccCChhhHHHHHHhhcC----
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIH-------------------------SDTRPYPCQYCGKRFHQKSDMKKHTYIHTG----   51 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~-------------------------~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~----   51 (134)
                      |+.|+..|.....|..||++-                         .+.++|.|..|...+....+|..|+.+...    
T Consensus       468 cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~l  547 (1406)
T KOG1146|consen  468 CPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNEL  547 (1406)
T ss_pred             CCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHH
Confidence            899999999999999999982                         224668999999999999899999864320    


Q ss_pred             ---------------------------------------CCceeccccccccCChhHHHHHHHHc-CCCCCcccCcchhh
Q psy2643          52 ---------------------------------------EKPHKCVVCGKAFSQSSNLITHLRKH-TGYKPFSCGLCDKA   91 (134)
Q Consensus        52 ---------------------------------------~~~~~C~~C~~~~~~~~~l~~h~~~~-~~~~~~~C~~C~~~   91 (134)
                                                             +..|.|.+|+.--.-..+|+.|+..- +-..+..+..++-.
T Consensus       548 ee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it  627 (1406)
T KOG1146|consen  548 EEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNIT  627 (1406)
T ss_pred             HHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHHHhhhcch
Confidence                                                   11389999998877778888888753 33334677777777


Q ss_pred             ccChHHHHHHHHhh
Q psy2643          92 FQRKVDLRRHRESQ  105 (134)
Q Consensus        92 f~~~~~l~~H~~~~  105 (134)
                      +.....+..+.+..
T Consensus       628 ~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  628 SSLASLLGGQGRLP  641 (1406)
T ss_pred             hhccccccCcCCCC
Confidence            66666665555555

>KOG2785|consensus

Probab=94.98  E-value=0.15  Score=35.32  Aligned_cols=51  Identities=24%  Similarity=0.573  Sum_probs=42.4

Q ss_pred             eeccccccccCChhHHHHHHHHcCCC-----------------------CCcccCcch---hhccChHHHHHHHHhh
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGY-----------------------KPFSCGLCD---KAFQRKVDLRRHRESQ  105 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~~  105 (134)
                      -.|..|+..+.+......||..+++-                       .-+.|-.|+   +.|.+....+.||..+
T Consensus       167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K  243 (390)
T KOG2785|consen  167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDK  243 (390)
T ss_pred             cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhc
Confidence            46889999999999999999887652                       247888888   9999999999999665

>KOG4173|consensus

Probab=94.90  E-value=0.012  Score=37.06  Aligned_cols=71  Identities=24%  Similarity=0.492  Sum_probs=32.5

Q ss_pred             cccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcC----------CCCCccc--CcchhhccChHHHH
Q psy2643          32 CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT----------GYKPFSC--GLCDKAFQRKVDLR   99 (134)
Q Consensus        32 C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~----------~~~~~~C--~~C~~~f~~~~~l~   99 (134)
                      |-..|.+...+..|....++   -.|..|.+.|.+...|..|+...+          |.-.|.|  ..|+--|.+..+.+
T Consensus        87 c~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~Rk  163 (253)
T KOG4173|consen   87 CCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRK  163 (253)
T ss_pred             hHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhh
Confidence            33444444434444333222   135555555555555555543221          2334555  23555555555555


Q ss_pred             HHHHhh
Q psy2643         100 RHRESQ  105 (134)
Q Consensus       100 ~H~~~~  105 (134)
                      +|+-..
T Consensus       164 dH~I~~  169 (253)
T KOG4173|consen  164 DHMIRM  169 (253)
T ss_pred             hHHHHh
Confidence            555333

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=94.82  E-value=0.087  Score=30.07  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=23.8

Q ss_pred             Cccc----CcchhhccChHHHHHHHHhhCC
Q psy2643          82 PFSC----GLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        82 ~~~C----~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      .|.|    +.|+....+...+++|.+.+|+
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            3999    9999999999999999999885

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2231|consensus

Probab=94.76  E-value=0.073  Score=39.66  Aligned_cols=77  Identities=23%  Similarity=0.424  Sum_probs=49.9

Q ss_pred             cCcccccccCChhhHHHHHHhhcCCCceeccccc---------cccCChhHHHHHHHHcCC-CC----CcccCcchhhcc
Q psy2643          28 PCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG---------KAFSQSSNLITHLRKHTG-YK----PFSCGLCDKAFQ   93 (134)
Q Consensus        28 ~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~---------~~~~~~~~l~~h~~~~~~-~~----~~~C~~C~~~f~   93 (134)
                      .|..| ..|.+...|..|+...|.  .+.|..|-         ....+.+.|..|+....- ++    .-.|..|...|.
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fl  193 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFL  193 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhc
Confidence            34444 445577889999976553  23443332         233445677788775322 22    256888999999


Q ss_pred             ChHHHHHHHHhhCC
Q psy2643          94 RKVDLRRHRESQHP  107 (134)
Q Consensus        94 ~~~~l~~H~~~~h~  107 (134)
                      ....|.+|++..|-
T Consensus       194 d~~el~rH~~~~h~  207 (669)
T KOG2231|consen  194 DDDELYRHLRFDHE  207 (669)
T ss_pred             cHHHHHHhhcccee
Confidence            99999999987654

>TIGR00622 ssl1 transcription factor ssl1

Probab=94.36  E-value=0.055  Score=30.97  Aligned_cols=81  Identities=16%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             CCCccCcccccccCChhhHHHHHHhhcCCCc------------eeccccccccCChhHHHHHHHHcCCCCCcccCcchhh
Q psy2643          24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKP------------HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKA   91 (134)
Q Consensus        24 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~------------~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~   91 (134)
                      +.|..|+.|+-...+...|.+..-....-++            ..|..|...|........  ..-.....|.|+.|...
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~   90 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNV   90 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccccceeCCCCCCc
Confidence            3578899999888877777664221111111            138888888876431110  00122346999999999


Q ss_pred             ccChHHHHHHHHhhC
Q psy2643          92 FQRKVDLRRHRESQH  106 (134)
Q Consensus        92 f~~~~~l~~H~~~~h  106 (134)
                      |-..-+.-.|..+|.
T Consensus        91 FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        91 FCVDCDVFVHESLHC  105 (112)
T ss_pred             cccccchhhhhhccC
Confidence            998888888877764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=93.94  E-value=0.039  Score=31.52  Aligned_cols=30  Identities=30%  Similarity=0.790  Sum_probs=20.2

Q ss_pred             ccCcccccccCChhhHHHHHHhhcCCCceeccccccccCCh
Q psy2643          27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQS   67 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~   67 (134)
                      ..|+.||..|--.           +..|..|+.||..|...
T Consensus        10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence            3688888776542           23567788888777665

The function of members of this family is unknown.

>KOG2186|consensus

Probab=93.83  E-value=0.046  Score=35.64  Aligned_cols=47  Identities=23%  Similarity=0.595  Sum_probs=30.8

Q ss_pred             CccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHH
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      .|.|..||.+..-.. +..|+..-++ .-|.|.-|+..|.. .+...|..
T Consensus         3 ~FtCnvCgEsvKKp~-vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVKKPQ-VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhccccc-hHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            366777777766554 6667655444 45777778877777 45666665

>KOG4173|consensus

Probab=93.37  E-value=0.065  Score=33.93  Aligned_cols=72  Identities=21%  Similarity=0.486  Sum_probs=54.4

Q ss_pred             CccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhc----------CCCceeccc--cccccCChhHHH
Q psy2643           4 CGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHT----------GEKPHKCVV--CGKAFSQSSNLI   71 (134)
Q Consensus         4 C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~----------~~~~~~C~~--C~~~~~~~~~l~   71 (134)
                      |-..|.....+..|..+.++.   .|..|.+.|++...|..|+...|          |+..|.|.+  |+..|.+...-.
T Consensus        87 c~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~Rk  163 (253)
T KOG4173|consen   87 CCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRK  163 (253)
T ss_pred             hHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhh
Confidence            445666667777777665553   79999999999988888876443          456688876  999999998888


Q ss_pred             HHHH-HcC
Q psy2643          72 THLR-KHT   78 (134)
Q Consensus        72 ~h~~-~~~   78 (134)
                      .|+- .|.
T Consensus       164 dH~I~~Hk  171 (253)
T KOG4173|consen  164 DHMIRMHK  171 (253)
T ss_pred             hHHHHhcc
Confidence            8865 454

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.88  E-value=0.066  Score=23.79  Aligned_cols=25  Identities=28%  Similarity=0.639  Sum_probs=15.7

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      .|.|..||..+...            +.|..||.||.
T Consensus         2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE------------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC------------cCCCcCcCCCC
Confidence            36788888765432            13457888874

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.78  E-value=0.092  Score=35.97  Aligned_cols=24  Identities=25%  Similarity=0.573  Sum_probs=12.1

Q ss_pred             ccCcc--cccccCChhhHHHHHHhhc
Q psy2643          27 YPCQY--CGKRFHQKSDMKKHTYIHT   50 (134)
Q Consensus        27 ~~c~~--C~~~~~~~~~l~~h~~~~~   50 (134)
                      |.||.  |.........|..|....+
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H  177 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQH  177 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhc
Confidence            44543  4444444555555655544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=92.71  E-value=0.035  Score=37.49  Aligned_cols=63  Identities=24%  Similarity=0.456  Sum_probs=37.3

Q ss_pred             cCccccCChHHHHHHHHHcC-CCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHH
Q psy2643           3 QCGKTFKRSSTLSTHLLIHS-DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus         3 ~C~~~f~~~~~l~~h~~~~~-~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      -|.+.+.....|+-|+.--+ ..+..+=|          .-..+.......+||+|.+|++.+...-.|+-|+.
T Consensus       356 gC~K~YknqnGLKYH~lhGH~~~~~~~~p----------~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         356 GCNKKYKNQNGLKYHMLHGHQNQKLHENP----------SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CchhhhccccchhhhhhccccCcccCCCC----------CccccccccccCCceeccccchhhccCccceeccc
Confidence            47888998888998875422 22111111          00111112344678888888888888777776654

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=92.58  E-value=0.31  Score=27.76  Aligned_cols=26  Identities=27%  Similarity=0.522  Sum_probs=22.8

Q ss_pred             ceec----cccccccCChhHHHHHHHHcCC
Q psy2643          54 PHKC----VVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        54 ~~~C----~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      .|.|    ..|+..+.+...+..|++.+++
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            3889    9999999999999999987654

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2893|consensus

Probab=92.45  E-value=0.037  Score=35.87  Aligned_cols=41  Identities=32%  Similarity=0.665  Sum_probs=20.3

Q ss_pred             ccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHH
Q psy2643          57 CVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH  101 (134)
Q Consensus        57 C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H  101 (134)
                      |=.|++.|.++..|..|++    .+.|+|..|-|...+-..|..|
T Consensus        13 cwycnrefddekiliqhqk----akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhh----hccceeeeehhhhccCCCceee
Confidence            3345555555555554444    2345555555544444444444

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=92.42  E-value=0.088  Score=23.85  Aligned_cols=32  Identities=31%  Similarity=0.818  Sum_probs=17.2

Q ss_pred             cCcccccccCChhhHHHHHHhhcCCCceecccccccc
Q psy2643          28 PCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAF   64 (134)
Q Consensus        28 ~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~   64 (134)
                      .||.|+..|.-...     ....+....+|..|+..|
T Consensus         4 ~CP~C~~~f~v~~~-----~l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    4 TCPNCQTRFRVPDD-----KLPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             ECCCCCceEEcCHH-----HcccCCcEEECCCCCcEe
Confidence            56667666655432     111233456677776665

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=92.21  E-value=0.12  Score=23.28  Aligned_cols=33  Identities=15%  Similarity=0.417  Sum_probs=17.3

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCCCcccCcchhhc
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAF   92 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   92 (134)
                      ..|+.|+..|.-....     .-.+....+|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~-----ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK-----IPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH-----CCCCCcEEECCCCCCEe
Confidence            3566666666555432     12233346666666554

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=91.98  E-value=0.05  Score=37.98  Aligned_cols=61  Identities=48%  Similarity=0.768  Sum_probs=51.9

Q ss_pred             ceeccccccccCChhHHHHHHH--HcCCC--CCcccC--cchhhccChHHHHHHHHhhCCCCCCccc
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLR--KHTGY--KPFSCG--LCDKAFQRKVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~--~~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~  114 (134)
                      .+.|..|...|.....+..|.+  .|.++  +++.|+  .|++.|.....+.+|...+....+....
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            5778889999999999999999  78888  899999  7999999999999998888777755433

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.85  E-value=0.11  Score=24.42  Aligned_cols=27  Identities=30%  Similarity=0.613  Sum_probs=14.6

Q ss_pred             CCCcccCcchhhccCh----HHHHHHHHhhC
Q psy2643          80 YKPFSCGLCDKAFQRK----VDLRRHRESQH  106 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~----~~l~~H~~~~h  106 (134)
                      .....|..|++.+...    +.|.+|++..|
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            3446777777766653    67777775544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=91.81  E-value=0.098  Score=21.75  Aligned_cols=9  Identities=44%  Similarity=1.036  Sum_probs=5.2

Q ss_pred             cCccccccc
Q psy2643          28 PCQYCGKRF   36 (134)
Q Consensus        28 ~c~~C~~~~   36 (134)
                      .|+.||..|
T Consensus        16 ~Cp~CG~~F   24 (26)
T PF10571_consen   16 FCPHCGYDF   24 (26)
T ss_pred             cCCCCCCCC
Confidence            456666555

Several members are annotated as putative helicases.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=91.59  E-value=0.095  Score=25.88  Aligned_cols=31  Identities=23%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             cCCCCCccCcccccccCChhhHHHHHHhhcC
Q psy2643          21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTG   51 (134)
Q Consensus        21 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~   51 (134)
                      ..++..+.||-|+..|.....+.+|.+..++
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            3456667777777777777777777665443

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=91.57  E-value=0.13  Score=31.68  Aligned_cols=24  Identities=38%  Similarity=0.818  Sum_probs=18.8

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCCCCcccCcch
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCD   89 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~   89 (134)
                      +.|.|++||..+             .++-|..||.||
T Consensus       133 ~~~vC~vCGy~~-------------~ge~P~~CPiCg  156 (166)
T COG1592         133 KVWVCPVCGYTH-------------EGEAPEVCPICG  156 (166)
T ss_pred             CEEEcCCCCCcc-------------cCCCCCcCCCCC
Confidence            369999998764             335678999998

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=91.44  E-value=0.11  Score=23.52  Aligned_cols=33  Identities=18%  Similarity=0.489  Sum_probs=16.4

Q ss_pred             ccCcccccccCChhhHHHHHHhhcCCCceecccccccc
Q psy2643          27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAF   64 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~   64 (134)
                      +.||.|+..|.......     ........|..|+..|
T Consensus         3 ~~CP~C~~~~~v~~~~~-----~~~~~~v~C~~C~~~~   35 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL-----GANGGKVRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEEEeCHHHc-----CCCCCEEECCCCCCEE
Confidence            35666666655443211     1112245677776655

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.15  E-value=0.028  Score=36.15  Aligned_cols=14  Identities=21%  Similarity=0.415  Sum_probs=10.4

Q ss_pred             CcccCcchhhccCh
Q psy2643          82 PFSCGLCDKAFQRK   95 (134)
Q Consensus        82 ~~~C~~C~~~f~~~   95 (134)
                      ...||.||.++...
T Consensus        48 V~vCP~CgyA~~~~   61 (214)
T PF09986_consen   48 VWVCPHCGYAAFEE   61 (214)
T ss_pred             EEECCCCCCccccc
Confidence            37899999876643

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=91.12  E-value=0.25  Score=30.29  Aligned_cols=29  Identities=17%  Similarity=0.301  Sum_probs=15.0

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      .-|.|+.|+..|.....+.         .-|.||.||.
T Consensus       108 ~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~  136 (158)
T TIGR00373       108 MFFICPNMCVRFTFNEAME---------LNFTCPRCGA  136 (158)
T ss_pred             CeEECCCCCcEeeHHHHHH---------cCCcCCCCCC
Confidence            3455655655555554442         1356666654

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>smart00614 ZnF_BED BED zinc finger

Probab=90.50  E-value=0.24  Score=23.95  Aligned_cols=25  Identities=40%  Similarity=0.844  Sum_probs=16.0

Q ss_pred             cccCcchhhccCh-----HHHHHHHHhhCC
Q psy2643          83 FSCGLCDKAFQRK-----VDLRRHRESQHP  107 (134)
Q Consensus        83 ~~C~~C~~~f~~~-----~~l~~H~~~~h~  107 (134)
                      -.|..|++.++..     +.|.+|++..|+
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~   48 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKHP   48 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence            4567777766554     577888775443

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=90.19  E-value=0.097  Score=33.64  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=10.7

Q ss_pred             eeccccccccCChhHHHHHHHHc
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      |.|..|++.|....-..+|+..-
T Consensus        78 ~~C~lc~KlFkg~eFV~KHI~nK  100 (214)
T PF04959_consen   78 WRCPLCGKLFKGPEFVRKHIFNK  100 (214)
T ss_dssp             EEE-SSS-EESSHHHHHHHHHHH
T ss_pred             ECCCCCCcccCChHHHHHHHhhc
Confidence            45555555555555555555443

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.15  E-value=0.36  Score=33.21  Aligned_cols=76  Identities=22%  Similarity=0.527  Sum_probs=38.9

Q ss_pred             CcccccccCChhhHHHHHHhhcCCCceecccccc----ccCChhHHHHHHHHcCCCCCcccCc--ch----hhccChHHH
Q psy2643          29 CQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGK----AFSQSSNLITHLRKHTGYKPFSCGL--CD----KAFQRKVDL   98 (134)
Q Consensus        29 c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~----~~~~~~~l~~h~~~~~~~~~~~C~~--C~----~~f~~~~~l   98 (134)
                      |..|...|-...+|-.|++..+. +-+.|++-+.    .|.+-.+|..|.+    .-.|.|..  |.    .+|.+...|
T Consensus       223 C~FC~~~FYdDDEL~~HcR~~HE-~ChICD~v~p~~~QYFK~Y~~Le~HF~----~~hy~ct~qtc~~~k~~vf~~~~el  297 (493)
T COG5236         223 CIFCKIYFYDDDELRRHCRLRHE-ACHICDMVGPIRYQYFKSYEDLEAHFR----NAHYCCTFQTCRVGKCYVFPYHTEL  297 (493)
T ss_pred             hhhccceecChHHHHHHHHhhhh-hhhhhhccCccchhhhhCHHHHHHHhh----cCceEEEEEEEecCcEEEeccHHHH
Confidence            55555555555555555554432 2222322211    2333334444333    22355532  22    478899999


Q ss_pred             HHHHHhhCCCC
Q psy2643          99 RRHRESQHPGS  109 (134)
Q Consensus        99 ~~H~~~~h~~~  109 (134)
                      +.|+..-|+..
T Consensus       298 ~~h~~~~h~~~  308 (493)
T COG5236         298 LEHLTRFHKVN  308 (493)
T ss_pred             HHHHHHHhhcc
Confidence            99987776643

>KOG2893|consensus

Probab=90.06  E-value=0.092  Score=34.10  Aligned_cols=41  Identities=29%  Similarity=0.664  Sum_probs=20.3

Q ss_pred             CcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHH
Q psy2643          29 CQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH   73 (134)
Q Consensus        29 c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h   73 (134)
                      |=+|++.|....-|..|+..    +.|+|.+|.+.+.+...|..|
T Consensus        13 cwycnrefddekiliqhqka----khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceee
Confidence            44555555555555555442    235555555544444444444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.05  E-value=0.059  Score=34.68  Aligned_cols=43  Identities=28%  Similarity=0.554  Sum_probs=25.9

Q ss_pred             CCccCcccccccCChhhHHHHHHhh----------cCCCc-----eeccccccccCCh
Q psy2643          25 RPYPCQYCGKRFHQKSDMKKHTYIH----------TGEKP-----HKCVVCGKAFSQS   67 (134)
Q Consensus        25 ~~~~c~~C~~~~~~~~~l~~h~~~~----------~~~~~-----~~C~~C~~~~~~~   67 (134)
                      +...||+|+..|....-.....+..          .+-.|     +.|+.||.++...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            4567888888887765433333211          11122     5899999876643

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=89.48  E-value=0.43  Score=29.25  Aligned_cols=38  Identities=18%  Similarity=0.399  Sum_probs=27.7

Q ss_pred             HcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCC
Q psy2643          20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQ   66 (134)
Q Consensus        20 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~   66 (134)
                      .......|.|+.|+..|+....+.         ..|.|+.||.....
T Consensus       103 ~e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~~  140 (158)
T TIGR00373       103 FETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLDY  140 (158)
T ss_pred             hccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEeee
Confidence            345566789999998888776554         25899999986443

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=89.32  E-value=0.28  Score=28.69  Aligned_cols=30  Identities=20%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             ccCcccccccCChhhHHHHHHhhcCCCceeccccccccCCh
Q psy2643          27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQS   67 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~   67 (134)
                      ..|+.||..|--.           +..|..|+.||..|...
T Consensus        10 r~Cp~cg~kFYDL-----------nk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDL-----------NRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCcccccc-----------CCCCccCCCcCCccCcc
Confidence            4688888776532           23567788888877655

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=89.19  E-value=0.37  Score=30.15  Aligned_cols=16  Identities=19%  Similarity=0.293  Sum_probs=8.2

Q ss_pred             ceeccccccccCChhH
Q psy2643          54 PHKCVVCGKAFSQSSN   69 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~   69 (134)
                      -|.|+.|+..|.....
T Consensus       117 ~Y~Cp~C~~rytf~eA  132 (178)
T PRK06266        117 FFFCPNCHIRFTFDEA  132 (178)
T ss_pred             EEECCCCCcEEeHHHH
Confidence            3555555555554443

>KOG2807|consensus

Probab=88.82  E-value=0.67  Score=31.66  Aligned_cols=27  Identities=19%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhhC
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      ...|.|+.|...|-..-+.-.|-.+|-
T Consensus       343 ~~~y~C~~Ck~~FCldCDv~iHesLh~  369 (378)
T KOG2807|consen  343 SGRYRCESCKNVFCLDCDVFIHESLHN  369 (378)
T ss_pred             CCcEEchhccceeeccchHHHHhhhhc
Confidence            345899999988888777778877763

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=88.57  E-value=0.19  Score=23.84  Aligned_cols=29  Identities=21%  Similarity=0.496  Sum_probs=16.4

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhc
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAF   92 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   92 (134)
                      .|.|..||..+.....          .....|+.||..+
T Consensus         3 ~y~C~~CG~~~~~~~~----------~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEY----------GTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCC----------CCceECCCCCCeE
Confidence            4667777766544321          1146777777543

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.52  E-value=0.69  Score=27.95  Aligned_cols=37  Identities=16%  Similarity=0.305  Sum_probs=23.6

Q ss_pred             CCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhc
Q psy2643          52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAF   92 (134)
Q Consensus        52 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   92 (134)
                      ..-|.|+.|+..|.....+..   .. .+..|.||.||...
T Consensus        97 ~~~Y~Cp~C~~~y~~~ea~~~---~d-~~~~f~Cp~Cg~~l  133 (147)
T smart00531       97 NAYYKCPNCQSKYTFLEANQL---LD-MDGTFTCPRCGEEL  133 (147)
T ss_pred             CcEEECcCCCCEeeHHHHHHh---cC-CCCcEECCCCCCEE
Confidence            345889999988876544321   11 24448999998654

>KOG2482|consensus

Probab=88.48  E-value=0.73  Score=31.73  Aligned_cols=51  Identities=24%  Similarity=0.440  Sum_probs=39.3

Q ss_pred             eeccccccccCChhHHHHHHHH-cCC--------------------------CCCcccCcchhhccChHHHHHHHHhh
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRK-HTG--------------------------YKPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~-~~~--------------------------~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      .+|..|.........|..|++. |.-                          .+.-.|-.|.-.|-....|..|+..+
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            4899999998889999999975 321                          11356777888999999999998543

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=87.98  E-value=0.15  Score=23.76  Aligned_cols=29  Identities=24%  Similarity=0.675  Sum_probs=16.8

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      |.|..||..|......      .. +..-.||.||.
T Consensus         6 y~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~   34 (42)
T PF09723_consen    6 YRCEECGHEFEVLQSI------SE-DDPVPCPECGS   34 (42)
T ss_pred             EEeCCCCCEEEEEEEc------CC-CCCCcCCCCCC
Confidence            6677777666554321      12 34567777775

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=87.79  E-value=0.4  Score=22.64  Aligned_cols=25  Identities=20%  Similarity=0.430  Sum_probs=14.4

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      |.|..||..|...           ...+.+|+.||.
T Consensus         3 Y~C~~Cg~~~~~~-----------~~~~irC~~CG~   27 (44)
T smart00659        3 YICGECGRENEIK-----------SKDVVRCRECGY   27 (44)
T ss_pred             EECCCCCCEeecC-----------CCCceECCCCCc
Confidence            6667777655432           123467777764

present in RNA polymerase I, II and III

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=87.72  E-value=0.5  Score=19.55  Aligned_cols=19  Identities=16%  Similarity=0.443  Sum_probs=14.2

Q ss_pred             ccCcchhhccChHHHHHHHH
Q psy2643          84 SCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~  103 (134)
                      .||.|++.+ ....+.+|..
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            688888887 5567777765

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=87.61  E-value=0.14  Score=24.97  Aligned_cols=29  Identities=21%  Similarity=0.558  Sum_probs=15.6

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      |.|..|+..|.....+      .. +..-.||.||.
T Consensus         6 y~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~   34 (52)
T TIGR02605         6 YRCTACGHRFEVLQKM------SD-DPLATCPECGG   34 (52)
T ss_pred             EEeCCCCCEeEEEEec------CC-CCCCCCCCCCC
Confidence            6677777766543211      11 33456777774

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=87.31  E-value=0.44  Score=23.95  Aligned_cols=34  Identities=24%  Similarity=0.540  Sum_probs=22.5

Q ss_pred             CCccCcccccccCChhhHHHHHHhhcCCCceeccccccc
Q psy2643          25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKA   63 (134)
Q Consensus        25 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~   63 (134)
                      ..|.||.||......-.-.     -....+|.|+.||..
T Consensus        26 v~F~CPnCGe~~I~Rc~~C-----Rk~g~~Y~Cp~CGF~   59 (61)
T COG2888          26 VKFPCPNCGEVEIYRCAKC-----RKLGNPYRCPKCGFE   59 (61)
T ss_pred             eEeeCCCCCceeeehhhhH-----HHcCCceECCCcCcc
Confidence            3589999997655543222     122468999999853

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=87.23  E-value=0.081  Score=32.21  Aligned_cols=16  Identities=31%  Similarity=0.858  Sum_probs=10.9

Q ss_pred             ceeccccccccCChhH
Q psy2643          54 PHKCVVCGKAFSQSSN   69 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~   69 (134)
                      .+.|+.||..|..-..
T Consensus        28 ~~~c~~c~~~f~~~e~   43 (154)
T PRK00464         28 RRECLACGKRFTTFER   43 (154)
T ss_pred             eeeccccCCcceEeEe
Confidence            3778888887766443

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=87.15  E-value=0.64  Score=29.13  Aligned_cols=36  Identities=22%  Similarity=0.564  Sum_probs=26.0

Q ss_pred             CCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCC
Q psy2643          22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQ   66 (134)
Q Consensus        22 ~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~   66 (134)
                      .....|.|+.|+..|.....+.         ..|.|+.||.....
T Consensus       113 ~~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~~  148 (178)
T PRK06266        113 ENNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLEE  148 (178)
T ss_pred             cCCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCee
Confidence            4456689999998888765442         25899999976544

>smart00531 TFIIE Transcription initiation factor IIE

Probab=86.68  E-value=1.4  Score=26.64  Aligned_cols=41  Identities=15%  Similarity=0.515  Sum_probs=27.1

Q ss_pred             CCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCC
Q psy2643          22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQ   66 (134)
Q Consensus        22 ~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~   66 (134)
                      .....|.||.|+..|.....+..   ... ...|.|+.||.....
T Consensus        95 ~~~~~Y~Cp~C~~~y~~~ea~~~---~d~-~~~f~Cp~Cg~~l~~  135 (147)
T smart00531       95 TNNAYYKCPNCQSKYTFLEANQL---LDM-DGTFTCPRCGEELEE  135 (147)
T ss_pred             cCCcEEECcCCCCEeeHHHHHHh---cCC-CCcEECCCCCCEEEE
Confidence            44566999999999886433221   112 344999999986533

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=86.25  E-value=0.17  Score=23.18  Aligned_cols=29  Identities=21%  Similarity=0.516  Sum_probs=15.0

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      |.|..||..|......      .. .....||.||.
T Consensus         6 y~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~   34 (41)
T smart00834        6 YRCEDCGHTFEVLQKI------SD-DPLATCPECGG   34 (41)
T ss_pred             EEcCCCCCEEEEEEec------CC-CCCCCCCCCCC
Confidence            5666677665543221      11 33456777764

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PHA00626 hypothetical protein

Probab=86.09  E-value=0.35  Score=23.98  Aligned_cols=15  Identities=27%  Similarity=0.443  Sum_probs=9.3

Q ss_pred             CceeccccccccCCh
Q psy2643          53 KPHKCVVCGKAFSQS   67 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~   67 (134)
                      ..|+|..||..|...
T Consensus        22 nrYkCkdCGY~ft~~   36 (59)
T PHA00626         22 DDYVCCDCGYNDSKD   36 (59)
T ss_pred             cceEcCCCCCeechh
Confidence            356777777666543

>KOG2186|consensus

Probab=85.97  E-value=0.65  Score=30.56  Aligned_cols=44  Identities=30%  Similarity=0.702  Sum_probs=21.6

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHH
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTY   47 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~   47 (134)
                      |..||....- ..+..|+-.-.+ ..|.|-.|+..|... .+..|..
T Consensus         6 CnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~~-sYknH~k   49 (276)
T KOG2186|consen    6 CNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFERV-SYKNHTK   49 (276)
T ss_pred             hhhhhhhccc-cchHHHHHhccC-CeeEEeecccccccc-hhhhhhh
Confidence            4455554433 234445543333 345666666666653 3455544

>KOG2482|consensus

Probab=85.83  E-value=1.2  Score=30.74  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             cccCcchhhccChHHHHHHHHhhCC
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      ..|--|...+-....|..|+...|.
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe  304 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHE  304 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHH
Confidence            5888899888888999999988765

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=84.98  E-value=0.24  Score=34.63  Aligned_cols=60  Identities=35%  Similarity=0.668  Sum_probs=43.4

Q ss_pred             CccCcccccccCChhhHHHHHH--hhcCC--Cceecc--ccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTY--IHTGE--KPHKCV--VCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~--~~~~~--~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|..|...|.....+..|.+  .|.++  +++.|+  .|+..|.....+..|...|.+..+..+
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE  354 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccc
Confidence            4667777777777777777777  67777  777777  677777777777777777766655544

>PF12907 zf-met2: Zinc-binding

Probab=83.83  E-value=1  Score=20.78  Aligned_cols=29  Identities=28%  Similarity=0.713  Sum_probs=20.4

Q ss_pred             cccCcchhhcc---ChHHHHHHHHhhCCCCCC
Q psy2643          83 FSCGLCDKAFQ---RKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        83 ~~C~~C~~~f~---~~~~l~~H~~~~h~~~~~  111 (134)
                      +.|.+|..+|.   ....|..|....|+....
T Consensus         2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~~~   33 (40)
T PF12907_consen    2 IICKICRQTFMQTTNEPQLKEHAENKHPKNTF   33 (40)
T ss_pred             cCcHHhhHHHHhcCCHHHHHHHHHccCCCCCH
Confidence            56888885554   456788888888877533

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=83.75  E-value=0.41  Score=36.50  Aligned_cols=49  Identities=22%  Similarity=0.449  Sum_probs=30.8

Q ss_pred             ccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhh
Q psy2643          27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKA   91 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~   91 (134)
                      ..|..||..+.... ....+..|...+...|..||..               ...|..|+.||..
T Consensus       436 l~C~~Cg~v~~Cp~-Cd~~lt~H~~~~~L~CH~Cg~~---------------~~~p~~Cp~Cgs~  484 (730)
T COG1198         436 LLCRDCGYIAECPN-CDSPLTLHKATGQLRCHYCGYQ---------------EPIPQSCPECGSE  484 (730)
T ss_pred             eecccCCCcccCCC-CCcceEEecCCCeeEeCCCCCC---------------CCCCCCCCCCCCC
Confidence            35777877765542 2222344455566788888744               2467899999954

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=83.67  E-value=0.63  Score=22.53  Aligned_cols=27  Identities=22%  Similarity=0.629  Sum_probs=15.7

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      .|.|..|+..|...          .......|+.||.
T Consensus         6 ~Y~C~~Cg~~~~~~----------~~~~~irCp~Cg~   32 (49)
T COG1996           6 EYKCARCGREVELD----------QETRGIRCPYCGS   32 (49)
T ss_pred             EEEhhhcCCeeehh----------hccCceeCCCCCc
Confidence            46777777776221          1234467777774

>KOG2785|consensus

Probab=82.99  E-value=2.3  Score=29.76  Aligned_cols=50  Identities=24%  Similarity=0.571  Sum_probs=36.2

Q ss_pred             ccCcccccccCChhhHHHHHHhhcC-----------------------CCceeccccc---cccCChhHHHHHHHH
Q psy2643          27 YPCQYCGKRFHQKSDMKKHTYIHTG-----------------------EKPHKCVVCG---KAFSQSSNLITHLRK   76 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h~~~~~~-----------------------~~~~~C~~C~---~~~~~~~~l~~h~~~   76 (134)
                      -.|-.|+..+.+......||..+|+                       ...+.|..|+   +.|.+....+.||..
T Consensus       167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            4566677666666666666665554                       3347899999   889999999999874

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=82.90  E-value=0.59  Score=27.76  Aligned_cols=28  Identities=32%  Similarity=0.608  Sum_probs=16.1

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      ....|-.||+.|..   |++|++.||+..+.
T Consensus        71 d~i~clecGk~~k~---LkrHL~~~~gltp~   98 (132)
T PF05443_consen   71 DYIICLECGKKFKT---LKRHLRTHHGLTPE   98 (132)
T ss_dssp             S-EE-TBT--EESB---HHHHHHHTT-S-HH
T ss_pred             CeeEEccCCcccch---HHHHHHHccCCCHH
Confidence            34678888888764   47888888877654

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PRK04023 DNA polymerase II large subunit; Validated

Probab=82.24  E-value=1.6  Score=34.50  Aligned_cols=9  Identities=22%  Similarity=0.671  Sum_probs=6.3

Q ss_pred             CcccCcchh
Q psy2643          82 PFSCGLCDK   90 (134)
Q Consensus        82 ~~~C~~C~~   90 (134)
                      ++.|+.||.
T Consensus       663 ~y~CPKCG~  671 (1121)
T PRK04023        663 EDECEKCGR  671 (1121)
T ss_pred             CCcCCCCCC
Confidence            367888874

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]

Probab=81.97  E-value=0.93  Score=30.85  Aligned_cols=48  Identities=23%  Similarity=0.479  Sum_probs=31.7

Q ss_pred             ccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhC
Q psy2643          57 CVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        57 C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      |..|...|..+..-..  -.-+....|.|+.|...|-..-+.-.|..+|.
T Consensus       365 Cf~CQ~~fp~~~~~~~--~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~  412 (421)
T COG5151         365 CFVCQGPFPKPPVSPF--DESTSSGRYQCELCKSTFCSDCDVFIHETLHF  412 (421)
T ss_pred             ceeccCCCCCCCCCcc--cccccccceechhhhhhhhhhhHHHHHHHHhh
Confidence            7777777766533110  01122346999999999998888888877763

>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]

Probab=80.56  E-value=0.94  Score=24.87  Aligned_cols=27  Identities=33%  Similarity=0.763  Sum_probs=18.0

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      |-.|..||+.|.+..          -.+|-+||.|..
T Consensus        58 Pa~CkkCGfef~~~~----------ik~pSRCP~CKS   84 (97)
T COG3357          58 PARCKKCGFEFRDDK----------IKKPSRCPKCKS   84 (97)
T ss_pred             ChhhcccCccccccc----------cCCcccCCcchh
Confidence            457888888887631          135677888863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		1e-30
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		9e-21
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		8e-19
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		7e-17
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-16
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-16
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		2e-16
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		3e-16
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		4e-16
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		4e-16
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-15
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-14
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		2e-13
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		5e-13
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		1e-12
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		1e-12
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		2e-12
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-12
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-12
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		7e-12
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-11
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		1e-10
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		1e-10
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-10
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		2e-10
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		2e-09
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		3e-09
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		3e-09
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		5e-08
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-07
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		6e-07
4gzn_C	60	Mouse Zfp57 Zinc Fingers In Complex With Methylated		4e-06
2epa_A	72	Solution Structure Of The First And Second Zf-C2h2		6e-06
2ct1_A	77	Solution Structure Of The Zinc Finger Domain Of Tra		7e-06
2lvt_A	29	Solution Structure Of Miz-1 Zinc Finger 9 Length =		1e-05
2ytb_A	42	Solution Structure Of C2h2 Type Zinc Finger Domain		2e-05
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		2e-05
2ep3_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-05
2ytr_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-05
2emk_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-05
2emm_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-05
2emh_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-05
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		3e-05
2yrj_A	46	Solution Structure Of The C2h2-Type Zinc Finger Dom		4e-05
2ytk_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-05
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		6e-05
2ytq_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-05
2em6_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-05
2emj_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		9e-05
2em2_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-04
2eoe_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-04
2yta_A	41	Solution Structure Of C2h2 Type Zinc Finger Domain		1e-04
2eog_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-04
2eop_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2eol_A	42	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2yts_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2eq2_A	46	Solution Structure Of The 16th C2h2 Type Zinc Finge		2e-04
2eme_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2yu8_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2em4_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2ytf_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-04
2en1_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-04
2eq1_A	46	Solution Structure Of The 9th C2h2 Type Zinc Finger		3e-04
2em1_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-04
2ytd_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		4e-04
2eom_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04
2enf_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04
2eml_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04
2yth_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-04
2eon_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-04
2eqw_A	42	Solution Structure Of The 6th C2h2 Type Zinc Finger		7e-04
2ytm_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
1bbo_A	57	High-Resolution Solution Structure Of The Double Cy		7e-04
2yti_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
2em3_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
2ysv_A	42	Solution Structure Of C2h2 Type Zinc Finger Domain		8e-04
2ytn_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04
2en6_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04
2ely_A	46	Solution Structure Of The Third Zf-C2h2 Domain From		8e-04
2eq3_A	46	Solution Structure Of The 17th C2h2 Type Zinc Finge		8e-04
2emw_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		9e-04
2ep2_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		9e-04
1x6h_A	86	Solution Structures Of The C2h2 Type Zinc Finger Do		9e-04

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 64/79 (81%)
Query: 1  CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
          CK CGK+FKR            DTRPYPCQYCGKRFHQKSDMKKHT+IHTGEKPHKC VC
Sbjct: 4  CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 61 GKAFSQSSNLITHLRKHTG 79
          GKAFSQSSNLITH RKHTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 95.5 bits (236), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 59/102 (57%)
Query: 1   CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C +CGK+F R              +PY C  CGK F  K D+ +H   HTGEKP+KC  C
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           GK+FSQ +NL  H R HTG KP++C  C K+F +   LR H+
Sbjct: 84  GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ 125

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 53/78 (67%)
Query: 25  RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
           +PY C  CGK F Q S+++KH   HTGEKP+KC  CGK+FSQSS+L  H R HTG KP+ 
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 85  CGLCDKAFQRKVDLRRHR 102
           C  C K+F R   L RH+
Sbjct: 63  CPECGKSFSRSDHLSRHQ 80

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 25  RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           RPY C  + C +RF + +D+ +H  IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3   RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83  FSCGLCDKAFQRKVDLRRH 101
           F+C +C + F R  + +RH
Sbjct: 63  FACDICGRKFARSDERKRH 81

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 25  RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           RPY C  + C +RF   S++ +H  IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3   RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83  FSCGLCDKAFQRKVDLRRH 101
           F+C +C + F R  + +RH
Sbjct: 63  FACDICGRKFARSDERKRH 81

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 25  RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           RPY C  + C +RF Q   + +H  IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83  FSCGLCDKAFQRKVDLRRH 101
           F+C +C + F R  + +RH
Sbjct: 63  FACDICGRKFARSDERKRH 81

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 25  RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           RPY C  + C +RF + +++ +H  IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3   RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83  FSCGLCDKAFQRKVDLRRH 101
           F+C +C + F R  + +RH
Sbjct: 63  FACDICGRKFARSDERKRH 81

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 25  RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           RPY C  + C +RF +  ++ +H  IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83  FSCGLCDKAFQRKVDLRRH 101
           F+C +C + F R  + +RH
Sbjct: 63  FACDICGRKFARSDERKRH 81

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 25  RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           RPY C  + C +RF +  ++ +H  IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 2   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 83  FSCGLCDKAFQRKVDLRRH 101
           F+C +C + F R  + +RH
Sbjct: 62  FACDICGRKFARSDERKRH 80

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 25  RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           RPY C  + C +RF +  ++ +H  IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83  FSCGLCDKAFQRKVDLRRH 101
           F+C +C + F R  + +RH
Sbjct: 63  FACDICGRKFARSDERKRH 81

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          RPY C  + C +RF QK+++  H  IHTG+KP +C +C + FSQ ++L  H+R HTG KP
Sbjct: 3  RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 83 FSCGLCDKAF 92
          F+C +C + F
Sbjct: 63 FACDICGRKF 72

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          RPY C  + C +RF QK+++  H  IHTG+KP +C +C + FSQ + L  H+R HTG KP
Sbjct: 3  RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 83 FSCGLCDKAF 92
          F+C +C + F
Sbjct: 63 FACDICGRKF 72

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 27  YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
           YPCQ CGK F  KS   +H  +H G +P+ C VCGK F    +L+ H++ HTG KP+ C 
Sbjct: 11  YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 87  LCDKAFQRKVDLRRHRES 104
           +C K F  +    RH  S
Sbjct: 70  ICAKRFMWRDSFHRHVTS 87

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 25  RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKP 82
           R + C  CGK F + S +K+H  +HTGEKP +C    CGK FS   NL TH+R HTG +P
Sbjct: 33  RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92
Query: 83  FSCGL--CDKAFQRKVDLRRH 101
           + C    C+K F +  +L+ H
Sbjct: 93  YVCPFDGCNKKFAQSTNLKSH 113

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 39/62 (62%)
Query: 23 DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          + R Y C  CGK F   SD+ KH   HTGEKP+KC  CGKAF Q S+LI H R HTG  P
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Query: 83 FS 84
           S
Sbjct: 75 SS 76

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 39/54 (72%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT 78
          +PY C  CGK F + S + +H  +HTGEKP+KC+ CGKAFSQ+S LI H R HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 25  RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           +PY C +  C +RF +   +K+H   HTG KP +C  C + FS+S +L TH R HTG KP
Sbjct: 35  KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP 94
Query: 83  FSCGL--CDKAFQRKVDLRRH 101
           FSC    C K F R  +L RH
Sbjct: 95  FSCRWPSCQKKFARSDELVRH 115

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 24  TRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTG 79
           T  + C Y  CGK + + S +K H   HTGEKP+ C    CG  F++S  L  H RKHTG
Sbjct: 4   TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 80  YKPFSCGLCDKAFQRKVDLRRH 101
           ++PF C  CD+AF R   L  H
Sbjct: 64  HRPFQCQKCDRAFSRSDHLALH 85

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 24  TRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTG 79
           T  + C Y  CGK + + S +K H   HTGEKP+ C    CG  F++S  L  H RKHTG
Sbjct: 3   TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 80  YKPFSCGLCDKAFQRKVDLRRH 101
           ++PF C  CD+AF R   L  H
Sbjct: 63  HRPFQCQKCDRAFSRSDHLALH 84

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 25  RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGY 80
           R + C Y  C K + + S +K H   HTGEKP+KC    C   F++S  L  H RKHTG 
Sbjct: 14  RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 81  KPFSCGLCDKAFQRKVDLRRH 101
           KPF CG+C+++F R   L  H
Sbjct: 74  KPFQCGVCNRSFSRSDHLALH 94

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 26  PYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
           P+ C+ CGK F +K  +K H   HTG KP+KC  C  A + SS+L  HLR H+  +PF C
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 86  GLCDKA----FQRKVDLRRHRESQHPGS 109
            +C  A     Q  V LR H     P S
Sbjct: 68  QICPYASRNSSQLTVHLRSHTGDSGPSS 95

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          +PY C  C   F  K ++  H  +HTGEKP++C +CG  F++ +NL TH R H+G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 28  PCQYCGKRFHQKSDMKKH-TYIHTGEKPHKCVVC--------GKAFSQSSNLITHLRKHT 78
           P + C + F    ++  H T  H G       VC        GK+F     L+ H+R HT
Sbjct: 27  PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 79  GYKPFSCGL--CDKAFQRKVDLRRHR 102
           G KPF C    C K F R  +L+ H+
Sbjct: 87  GEKPFPCPFPGCGKIFARSENLKIHK 112

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 37/73 (50%)
Query: 1  CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
          CK CG+ F +            D RPY C  C K F ++  ++ H YIH+ EKP KC  C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 61 GKAFSQSSNLITH 73
          GK F QS  L  H
Sbjct: 80 GKGFCQSRTLAVH 92

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 53  KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           KP +C +C + FS+S +L TH+R HTG KPF+C +C + F R  + +RHR+ QH
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 29  CQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY--KPFSCG 86
           C+ CGK F     + +H   H+GEKP+ C VCG  F +   +  H+R H G   KP+ C 
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 87  LCDKAFQRKVDLRRHRESQHPG 108
            C K F R   L  H +  H G
Sbjct: 70  SCGKGFSRPDHLNGHIKQVHSG 91

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 25 RPY--PCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT 78
          RPY  P + C +RF +  ++ +H  IHTG+KP +C +C + FS+S +L TH+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Query: 23  DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGY 80
           + RP+  QY          +  H   HTGEKPHKC    C K++S+  NL THLR HTG 
Sbjct: 45  ELRPFKAQYM---------LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE 95
Query: 81  KPFSC--GLCDKAFQRKVDLRRHRESQH 106
           KP+ C    C KAF    D  +H+   H
Sbjct: 96  KPYMCEHEGCSKAFSNASDRAKHQNRTH 123

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 57  CVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ 112
           C VC +AF++  +L  H R HT  KP+ CGLC++AF R+  L RH +  H G+  +
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 1   CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTY---IHTGEKPHKC 57
           C  C K F                +P+ C  CGK + +K ++ +H     ++  E+   C
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 58  VVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
            VC + F +   L  H+  HTG  P+ C  C + F +K DL+ H    H G
Sbjct: 70  SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 51  GEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           G    +C  CGK F  +  L  HLR HTG KP+ C  C+ A  +K  LR H E  H
Sbjct: 1   GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56

>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna Length = 60

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
          RP+ C +CGK +   S + +H   H G +P  C  CGK F   S +  HL+ H
Sbjct: 3  RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55

>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains From Human Krueppel-Like Factor 10 Length = 72

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 60  CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRHRES 104
           CGK + +SS+L  H R HTG KPFSC    C++ F R  +L RHR +
Sbjct: 25  CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of Transcriptional Repressor Ctcf Protein Length = 77

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 49  HTGEKPHKCVVCGKAFSQSSNLITH-LRKHT-GYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           H+GEKP++C +C   F+QS  +  H L+KHT     F C  CD    RK DL  H   QH
Sbjct: 10  HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9 Length = 29

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
          KP +CV+CGKAF+Q+S+LI H+R+HTG K
Sbjct: 1  KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29

>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In Zinc Finger Protein 32 Length = 42

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
          EKP++C  CGKAFSQ  +LI H+R HTG  P S
Sbjct: 9  EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 25  RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--VVCGKAFSQSSNLITHLRKHTGY 80
           + Y C +  CG  +++   ++ H   HTGEKP  C    C K F+   +L  H   HTG 
Sbjct: 2   KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 81  KPFSCGL--CDKAFQRKVDLRRHRESQH 106
           K F+C    CD  F  K ++++H    H
Sbjct: 62  KNFTCDSDGCDLRFTTKANMKKHFNRFH 89

>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 631- 663) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP++C  CGKAF+  SNL TH + HTG KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40

>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 760- 792) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+KC  CGKAFSQ+S L  H R HTG KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40

>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 668- 700) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP++C  CGKAFSQ+++LI H R HTG KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40

>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 544- 576) Of Human Zinc Finger Protein 95 Homolog Length = 46

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          E+PHKC  CGK+F QS++LI H R HTG KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40

>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 491- 523) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          E+P+ C VCGKAF+  SNLI H + HTG KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 27  YPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKP 82
           Y C +  CG  +++   ++ H   HTGEKP  C    C K F+   +L  H   HTG K 
Sbjct: 13  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 83  FSCGL--CDKAFQRKVDLRRHRESQH 106
           F+C    CD  F  K ++++H    H
Sbjct: 73  FTCDSDGCDLRFTTKANMKKHFNRFH 98

>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain (781- 813) From Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP++C  CGKAF+Q +NL  H R HTG KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40

>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 396- 428) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+KC  CGK F+Q+S+L  H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR 75
          + YPC+YC K F       KH   HTGE+ ++C+ CGK+F     + +H++
Sbjct: 49 KKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK 99

>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 775- 807) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+ C  CGKAFS  S LI H+R H+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40

>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 199- 231) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EK +KC VCGK FSQSS+L TH R HTG KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40

>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 612- 644) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP +C  CGK+FS SS L TH R HTG KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40

>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 584- 616) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP KC  CGKAF Q+ +L +HLR HTG KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40

>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 508- 540) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+KC  CGK F+Q+S+L  H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40

>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In Zinc Finger Protein 32 Length = 41

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
          +GEKP++C  CGK+FSQ  +L  H R HTG  P S
Sbjct: 6  SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40

>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693- 723) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          +G KP+ C  CGKAF   S LI H+R HTG KP
Sbjct: 6  SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38

>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 719- 751) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKPH+C  CGK+FS +S LI H R HTG  P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40

>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 581- 609) Of Human Zinc Finger Protein 268 Length = 42

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
          +GEKP++C  CGKAF   S LI H R HTG    S G
Sbjct: 6  SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSSG 42

>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 715- 747) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
          +PY C  CGK F QKS + +H  IHTGEKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40

>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          KP++C  CGKAFSQ+S L  H R HTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40

>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 725- 757) Of Human Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
          +PY C YCGK F   +++ +H  IHTGEKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40

>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 648- 680) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+KC  CGK F+Q+S+L  H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40

>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 724- 756) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          ++P++C+ CGKAF   S+LI H R HTG KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40

>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 607- 639) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP +C  C KAF+  SNLI H R HTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40

>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 563- 595) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
          +P+ C+ CGKRF Q S +  H  +HTGEKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40

>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+KC  CGKAF   SNL TH   HTG KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40

>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 637- 667) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          +GEKP+ C  CGKAF+  S LI H   HTG KP
Sbjct: 6  SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38

>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 426- 458) Of Human Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+KC  CGKAF + ++L  H R HTGY+P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40

>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 341- 373) Of Human Zinc Finger Protein 95 Homolog Length = 46

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          E+ H+C  CGK F Q+SN I H R HTG KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40

>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 340- 372) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+KC  CGK F+Q+S+L+ H   HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40

>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 752- 784) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP++C VCGKAFS   +L  H R H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40

>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 479- 511) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
          +P+ C+ CGKRF Q S +  H  +HTGEKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40

>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 397- 429) Of Human Zinc Finger Protein 95 Homolog Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+KC VCGKAF  SS+L+ H   H+G +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40

>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 484 Length = 42

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
          +GEKP+ C  CGKAF + S+ ITH R HTG
Sbjct: 6  SGEKPYVCTECGKAFIRKSHFITHERIHTG 35

>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 696- 728) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+KC+ CGKAF  +S+   H R HTG +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40

>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2 Zinc Finger From The Human Enhancer Binding Protein Mbp-1 Length = 57

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR 75
          Y C+ CG R  + S +KKH   HT  +P+ C  C  +F    NL  H++
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 564- 596) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
          +PY C  CGK F Q S + +H  IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40

>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 640- 672) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP++C VC KAF+Q ++L  H + HTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40

>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In Zinc Finger Protein 473 Length = 42

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
          +GEKP+ C  CGKAF+QSS L  H R HTG
Sbjct: 6  SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35

>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 732- 764) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
          +PY C  CGK F Q S + +H  IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40

>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 887- 919) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP+ C  CGK FSQ S L  H R HTG KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40

>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP KCV CGK FS+ S L  H + HTG KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40

>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
          EKP++C  CGKAFS  S+L TH   HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40

>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 301- 331) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
          +GEKP+ C  CGK FS  S LI H R HTG K
Sbjct: 6  SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37

>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 603- 635) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
          +PY C  CGK F +KS +  H  IHTGEKP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40

>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Transcriptional Repressor Ctcf Length = 86

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 48  IHTGEKPHKCVVCGKAFSQSSNLITHLRKH--TGYKP--FSCGLCDKAFQRKVDLRRHRE 103
            HTGEKP+ C  C K F Q   L  H +++    + P  F C  C K F R+  + RH +
Sbjct: 9   THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 104 S 104
           +
Sbjct: 69  N 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-40
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	9e-14
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-38
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-27
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-14
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-38
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-38
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-38
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-32
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-30
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	9e-36
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-31
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	8e-35
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-32
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-34
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-31
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-24
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	8e-15
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-12
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-34
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-26
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-25
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-15
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-33
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-28
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	7e-25
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-31
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-28
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-24
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	8e-22
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	7e-10
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-31
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-28
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-26
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-29
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-29
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-15
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-29
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-28
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-24
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-17
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-29
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-27
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	9e-27
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	6e-22
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	6e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	9e-27
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-26
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	4e-26
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-21
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-16
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-25
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-24
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-25
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-21
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-25
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-21
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-19
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-24
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-22
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	7e-09
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-23
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	6e-20
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-16
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-23
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	7e-20
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-16
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-23
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-23
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-22
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-15
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-22
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-18
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-15
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	4e-20
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-17
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	7e-20
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-19
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	7e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	9e-17
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-15
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-16
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-10
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-16
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-09
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-16
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	9e-10
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-16
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-10
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-16
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-09
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	3e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	7e-04
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-16
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-10
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-16
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-08
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-04
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-16
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-10
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	6e-16
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-14
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	3e-08
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	7e-16
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	2e-09
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	9e-05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-16
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	9e-10
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-16
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-09
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-16
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-10
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-16
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-09
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	7e-16
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-10
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-16
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-09
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	9e-16
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	1e-09
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-16
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-10
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-15
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-09
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-15
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-10
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-15
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-09
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-15
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-09
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-05
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-15
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-10
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-15
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-10
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-05
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-15
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-10
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-15
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-10
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-15
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-10
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	1e-15
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	3e-10
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	5e-05
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	1e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-15
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-10
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-15
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-10
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-15
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-09
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-15
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-09
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-15
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-09
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-05
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-15
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-10
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-15
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-10
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-15
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-09
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-15
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-09
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-05
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-15
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-10
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-15
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-10
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-04
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-04
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-15
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-10
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-15
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-09
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-15
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-10
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-04
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-15
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-10
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-15
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-10
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-15
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-10
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-15
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	4e-09
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	4e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	8e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-15
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	8e-10
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	4e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-15
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-09
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-15
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-10
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-15
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-10
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-15
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-10
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	3e-15
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	6e-10
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	5e-05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	3e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-15
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-09
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-15
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-10
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-15
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-09
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-15
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-10
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-15
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-09
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-04
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-15
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-09
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-15
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-10
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-15
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-10
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-15
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-09
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	5e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-15
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-09
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-15
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-10
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-15
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-09
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-15
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-09
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	9e-05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-15
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-09
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-15
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-09
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-15
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-09
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	9e-04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-15
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-10
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-15
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-10
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-15
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-09
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-15
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-10
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	6e-15
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-12
2epa_A	72	Krueppel-like factor 10; transforming growth facto	5e-07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-15
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-09
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-15
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-10
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-15
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-10
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-05
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-15
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-10
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-05
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	9e-15
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	5e-08
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	1e-14
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	3e-08
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	8e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-14
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-08
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-14
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-09
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-14
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-08
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-14
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-10
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-14
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-09
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-14
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-09
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-14
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-08
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	3e-14
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-09
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	9e-05
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-14
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	9e-06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-08
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	4e-13
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	7e-08
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	3e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	4e-13
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-12
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-10
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-07
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	2e-12
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	7e-08
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	8e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-12
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-09
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	6e-12
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	1e-05
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	4e-04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	3e-11
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	9e-06
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	1e-10
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	6e-09
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	2e-07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	1e-08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	6e-07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	5e-08
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	4e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	6e-08
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	9e-06
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	1e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	6e-07
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	1e-05
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	3e-05
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	1e-04
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	7e-04
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	3e-04

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score =  129 bits (326), Expect = 2e-40
 Identities = 74/79 (93%), Positives = 76/79 (96%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
          CK CGK+FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT+IHTGEKPHKC VC
Sbjct: 4  CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

Query: 61 GKAFSQSSNLITHLRKHTG 79
          GKAFSQSSNLITH RKHTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 60.9 bits (149), Expect = 9e-14
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 56  KCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
            C +CGK+F +SS L THL  H+  +P+ C  C K F +K D+++H 
Sbjct: 3   DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score =  124 bits (314), Expect = 4e-38
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH---TYIHTGEKPHKC 57
           C  C K F     L  H   H+  +P+ C  CGK + +K ++ +H     ++  E+   C
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69

Query: 58  VVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
            VC + F +   L  H+  HTG  P+ C  C + F +K DL+ H    H G
Sbjct: 70  SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 96.8 bits (242), Expect = 3e-27
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 21  HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK---H 77
            S +    C  C K+F  K  +K H   HTGEKP +C  CGK + +  NL+ H  +   +
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61

Query: 78  TGYKPFSCGLCDKAFQRKVDLRRH 101
              + F+C +C + F+R+++LR H
Sbjct: 62  RSEQVFTCSVCQETFRRRMELRLH 85

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 62.9 bits (154), Expect = 4e-14
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTY-IHTGEK 53
           C  C +TF+R   L  H++ H+   PY C  C ++F QK D++ H   +H+G  
Sbjct: 69  CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  126 bits (319), Expect = 5e-38
 Identities = 50/101 (49%), Positives = 64/101 (63%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C +CGK+F RS  L+ H   H+  +PY C  CGK F  K D+ +H   HTGEKP+KC  C
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           GK+FSQ +NL  H R HTG KP++C  C K+F +   LR H
Sbjct: 84  GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  126 bits (318), Expect = 5e-38
 Identities = 45/102 (44%), Positives = 64/102 (62%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C +CGK+F     L+ H   H+  +PY C  CGK F Q+++++ H   HTGEKP+ C  C
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           GK+FSQ ++L  H R HTG KP+ C  C K+F R+ +L  H+
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  126 bits (318), Expect = 6e-38
 Identities = 47/101 (46%), Positives = 62/101 (61%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C +CGK+F + + L  H   H+  +PY C  CGK F Q + ++ H   HTGEKP+KC  C
Sbjct: 80  CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           GK+FS+  NL TH R HTG KP+ C  C K+F R+  L  H
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  111 bits (280), Expect = 3e-32
 Identities = 38/96 (39%), Positives = 54/96 (56%)

Query: 7   TFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQ 66
           +   SS+      +    +PY C  CGK F +   + +H   HTGEKP+KC  CGK+FS 
Sbjct: 2   SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61

Query: 67  SSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
             +L  H R HTG KP+ C  C K+F ++ +LR H+
Sbjct: 62  KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ 97

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  107 bits (269), Expect = 2e-30
 Identities = 36/82 (43%), Positives = 49/82 (59%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C +CGK+F + + L  H   H+  +PY C  CGK F ++ ++  H   HTGEKP+KC  C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167

Query: 61  GKAFSQSSNLITHLRKHTGYKP 82
           GK+FS+   L  H R HTG K 
Sbjct: 168 GKSFSRRDALNVHQRTHTGKKT 189

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score =  117 bits (296), Expect = 9e-36
 Identities = 36/86 (41%), Positives = 45/86 (52%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
          C+ CGK F R   L TH+  H+  +PY C+ C       S + KH  IH+ E+P KC +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70

Query: 61 GKAFSQSSNLITHLRKHTGYKPFSCG 86
            A   SS L  HLR HTG    S G
Sbjct: 71 PYASRNSSQLTVHLRSHTGDSGPSSG 96

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score =  105 bits (265), Expect = 5e-31
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query: 21  HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY 80
              + P+ C+ CGK F +K  +K H   HTG KP+KC  C  A + SS+L  HLR H+  
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62

Query: 81  KPFSCGLCDKAFQRKVDLRRHR 102
           +PF C +C  A +    L  H 
Sbjct: 63  RPFKCQICPYASRNSSQLTVHL 84

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score =  115 bits (291), Expect = 8e-35
 Identities = 35/85 (41%), Positives = 44/85 (51%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           CK CG+ F +S  L  H   H+D RPY C  C K F ++  ++ H YIH+ EKP KC  C
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSC 85
           GK F QS  L  H   H      + 
Sbjct: 80  GKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score =  108 bits (273), Expect = 3e-32
 Identities = 30/92 (32%), Positives = 46/92 (50%)

Query: 11  SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNL 70
           SS  S   L     + + C++CG+ F +  ++  H   HT E+P+ C +C KAF +  +L
Sbjct: 2   SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61

Query: 71  ITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
             H   H+  KPF C  C K F +   L  H+
Sbjct: 62  RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score =  114 bits (289), Expect = 3e-34
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 5/105 (4%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV- 59
            K C K F+ +S +  HL  H   R + C  CGK F + S +K+H  +HTGEKP +C   
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68

Query: 60  -CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
            CGK FS   NL TH+R HTG +P+ C    C+K F +  +L+ H
Sbjct: 69  GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score =  106 bits (266), Expect = 6e-31
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV 58
           C +CGK F  SS L  H L+H+  +P+ C +  CGKRF    +++ H  IHTG++P+ C 
Sbjct: 37  CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96

Query: 59  V--CGKAFSQSSNLITHLRKHTGYKPF 83
              C K F+QS+NL +H+  H   K  
Sbjct: 97  FDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 89.5 bits (223), Expect = 2e-24
 Identities = 35/81 (43%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 25  RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           R   C +  C K F   S M+KH + H G + H C  CGKAF +SS L  H   HTG KP
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62

Query: 83  FSCGL--CDKAFQRKVDLRRH 101
           F C    C K F    +LR H
Sbjct: 63  FQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 64.8 bits (159), Expect = 8e-15
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 2   KQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHK 56
           + CGK F     L TH+ IH+  RPY C +  C K+F Q +++K H   H   K ++
Sbjct: 68  EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 57.5 bits (140), Expect = 7e-12
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 52  EKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
            +   C    C K F  +S +  HL  H G +   C  C KAF     L+RH
Sbjct: 3   PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH 53

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score =  113 bits (285), Expect = 9e-34
 Identities = 44/107 (41%), Positives = 58/107 (54%), Gaps = 6/107 (5%)

Query: 1   CKQ--CGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHK 56
           C    C K + + S L  H   H+  +PY C +  C +RF +   +K+H   HTG KP +
Sbjct: 9   CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68

Query: 57  CVVCGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
           C  C + FS+S +L TH R HTG KPFSC    C K F R  +L RH
Sbjct: 69  CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 94.1 bits (235), Expect = 3e-26
 Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 25  RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGY 80
           RP+ C Y  C KR+ + S ++ H+  HTGEKP++C    C + FS+S  L  H R+HTG 
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64

Query: 81  KPFSCGLCDKAFQRKVDLRRHR 102
           KPF C  C + F R   L+ H 
Sbjct: 65  KPFQCKTCQRKFSRSDHLKTHT 86

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 92.6 bits (231), Expect = 1e-25
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC--V 58
            K C + F RS  L  H   H+  +P+ C+ C ++F +   +K HT  HTGEKP  C   
Sbjct: 41  FKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWP 100

Query: 59  VCGKAFSQSSNLITHLRKH 77
            C K F++S  L+ H   H
Sbjct: 101 SCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 67.2 bits (165), Expect = 1e-15
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 50  TGEKPHKC--VVCGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
           + ++P  C    C K + + S+L  H RKHTG KP+ C    C++ F R   L+RH
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score =  110 bits (278), Expect = 8e-33
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 3   QCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGK 62
           QCGK+F   S    H+ +H   RPY C  CGK+F  K  +  H  IHTG KP++C +C K
Sbjct: 14  QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73

Query: 63  AFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLR 99
            F    +   H    +  K +     ++         
Sbjct: 74  RFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 99.4 bits (249), Expect = 2e-28
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 20  IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
             S  + YPCQ CGK F  KS   +H  +H G +P+ C VCGK F    +L+ H++ HTG
Sbjct: 4   GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62

Query: 80  YKPFSCGLCDKAFQRKVDLRRH 101
            KP+ C +C K F  +    RH
Sbjct: 63  IKPYECNICAKRFMWRDSFHRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 90.2 bits (225), Expect = 7e-25
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
           C  CGK FK    L  H+ IH+  +PY C  C KRF  +     H ++ +  K ++    
Sbjct: 40  CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97

Query: 61  GKAFSQSSNLIT 72
            +  +++S   +
Sbjct: 98  EQNTTEASGPSS 109

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score =  109 bits (274), Expect = 1e-31
 Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 12/120 (10%)

Query: 1   CKQCGKTFKRSSTLSTHLL---IHSDTRPYPCQYCG-----KRFHQKSDMKKHTYIHTGE 52
              C + F     L  H+    IH + + + C + G     + F  +  +  H   HTGE
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65

Query: 53  KPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSC--GLCDKAFQRKVDLRRHRESQHPG 108
           KPHKC    C K++S+  NL THLR HTG KP+ C    C KAF    D  +H+   H  
Sbjct: 66  KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 99.6 bits (249), Expect = 5e-28
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC- 57
           C +  + FK    L  H+  H+  +P+ C +  C K + +  ++K H   HTGEKP+ C 
Sbjct: 42  CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101

Query: 58  -VVCGKAFSQSSNLITH-LRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
              C KAFS +S+   H  R H+  KP+ C L  C K +     LR+H
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 90.0 bits (224), Expect = 3e-24
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 3   QCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKH-TYIHTGEKPHKCVV 59
            C K++ R   L THL  H+  +PY C++  C K F   SD  KH    H+ EKP+ C +
Sbjct: 74  GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133

Query: 60  --CGKAFSQSSNLITHLRKHTG 79
             C K ++  S+L  H++   G
Sbjct: 134 PGCTKRYTDPSSLRKHVKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 83.8 bits (208), Expect = 8e-22
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 25  RPYPCQYCGKRFHQKSDMKKH---TYIHTGEKPHKCVVCG-----KAFSQSSNLITHLRK 76
                  C + F  +  +  H    +IH   K   C   G     + F     L+ H+R+
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61

Query: 77  HTGYKPFSCGL--CDKAFQRKVDLRRH 101
           HTG KP  C    C K++ R  +L+ H
Sbjct: 62  HTGEKPHKCTFEGCRKSYSRLENLKTH 88

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 53.0 bits (128), Expect = 7e-10
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)

Query: 52  EKPHKCVVCGKAFSQSSNLITHLRK---HTGYKPFSCGLCD-----KAFQRKVDLRRH 101
           E   +   C + F     L+ H+     H   K F C         + F+ +  L  H
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score =  108 bits (273), Expect = 2e-31
 Identities = 42/114 (36%), Positives = 52/114 (45%), Gaps = 13/114 (11%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPY---------PCQYCGKRFHQKSDMKKHTYIHTG 51
            K C +TF     L TH+ +     P           C   GK F  K  +  H  +HTG
Sbjct: 28  KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87

Query: 52  EKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
           EKP  C    CGK F++S NL  H R HTG KPF C    CD+ F    D ++H
Sbjct: 88  EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score =  101 bits (253), Expect = 1e-28
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV 58
           C + GK+FK    L  H+ +H+  +P+PC +  CGK F +  ++K H   HTGEKP KC 
Sbjct: 65  CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124

Query: 59  V--CGKAFSQSSNLITHLRKHTGYKPFSC 85
              C + F+ SS+   H+  HT  K    
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 93.9 bits (234), Expect = 9e-26
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 11/110 (10%)

Query: 4   CGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHK------- 56
            G + +      +   I       P + C + F    ++  H  +     P +       
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 57  --CVVCGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRHR 102
             C   GK+F     L+ H+R HTG KPF C    C K F R  +L+ H+
Sbjct: 63  EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 11/57 (19%), Positives = 19/57 (33%)

Query: 60  CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHI 116
            G +       ++               CD+ F    +L  H   +H G P Q +H+
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score =  101 bits (254), Expect = 2e-29
 Identities = 26/80 (32%), Positives = 44/80 (55%)

Query: 2  KQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
          + C + F +S +L+ H+ IH+  +P+ C+ C + F +   +  H   HTGEKP  C +CG
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69

Query: 62 KAFSQSSNLITHLRKHTGYK 81
          + F++S     H + H   K
Sbjct: 70 RKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score =  101 bits (254), Expect = 2e-29
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 25  RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           RPY C    C +RF Q   + +H  IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62

Query: 83  FSCGLCDKAFQRKVDLRRHR 102
           F+C +C + F R  + +RH 
Sbjct: 63  FACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 65.2 bits (160), Expect = 3e-15
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 52  EKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           E+P+ C V  C + FSQS +L  H+R HTG KPF C +C + F R   L  H
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score =  104 bits (262), Expect = 2e-29
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 3   QCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--V 58
            CG  + ++  L  HL  H+  +P+PC+   C K F     + +H+  HTGEK   C   
Sbjct: 19  DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78

Query: 59  VCGKAFSQSSNLITHLRKHTGYK--PFSCGL--CDKAFQRKVDLRRH 101
            C   F+  +N+  H  +    K   + C    C KAF++   L+ H
Sbjct: 79  GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score =  101 bits (253), Expect = 3e-28
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 1   CKQ--CGKTFKRSSTLSTHLLIHSD--TRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKP 54
           C    C   F   + +  H     +     Y C +  CGK F + + +K H + HT + P
Sbjct: 75  CDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP 134

Query: 55  HKC--VVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           ++C    C K FS  S L  H + H GY       C    +      +H    H
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 90.7 bits (226), Expect = 4e-24
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 17  HLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--VVCGKAFSQSSNLIT 72
              +    + Y C +  CG  +++   ++ H   HTGEKP  C    C K F+   +L  
Sbjct: 3   EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62

Query: 73  HLRKHTGYKPFSC--GLCDKAFQRKVDLRRHR 102
           H   HTG K F+C    CD  F  K ++++H 
Sbjct: 63  HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 73.4 bits (181), Expect = 2e-17
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 44  KHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSC--GLCDKAFQRKVDLR 99
               +    K + C    CG A++++  L  HL KHTG KPF C    C+K F     L 
Sbjct: 2   GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61

Query: 100 RH 101
           RH
Sbjct: 62  RH 63

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score =  101 bits (253), Expect = 3e-29
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE--KPHKCV 58
          C+ CGK F+    L+ H L HS  +PY C  CG RF +K  M  H   H G   KP+ C 
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69

Query: 59 VCGKAFSQSSNLITHLRK-HTGYK 81
           CGK FS+  +L  H+++ H+G  
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 97.2 bits (243), Expect = 1e-27
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 21  HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG- 79
            S +    C+ CGK F     + +H   H+GEKP+ C VCG  F +   +  H+R H G 
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61

Query: 80  -YKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
             KP+ C  C K F R   L  H +  H G
Sbjct: 62  VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 94.0 bits (235), Expect = 9e-27
 Identities = 35/73 (47%), Positives = 40/73 (54%)

Query: 11 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNL 70
          S +         + R Y C  CGK F   SD+ KH   HTGEKP+KC  CGKAF Q S+L
Sbjct: 3  SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62

Query: 71 ITHLRKHTGYKPF 83
          I H R HTG  P 
Sbjct: 63 IGHHRVHTGSGPS 75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 81.7 bits (203), Expect = 6e-22
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 38  QKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVD 97
                 +  +     + +KC  CGK+FS SS+L  H R HTG KP+ C  C KAF ++  
Sbjct: 2   SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61

Query: 98  LRRH 101
           L  H
Sbjct: 62  LIGH 65

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.2 bits (103), Expect = 6e-07
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 66  QSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
            S +      +    + + C  C K+F    DL +HR
Sbjct: 2   SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR 38

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 94.5 bits (236), Expect = 9e-27
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 25  RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
           +P+ C+ C + F +   +  H   HTGEKP  C +CG+ F++S     H        P  
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPIL 60

Query: 85  CGLCDKAFQRKVDLRRHRESQ 105
               ++   +   L       
Sbjct: 61  EDKVEELLSKNYHLENEVARL 81

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 92.6 bits (231), Expect = 5e-26
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
          C+ C + F RS  L+TH+  H+  +P+ C  CG++F +  + K+H  I     P      
Sbjct: 6  CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKV 64

Query: 61 GKAFSQSSNL---ITHLRKHTGYK 81
           +  S++ +L   +  L+K  G +
Sbjct: 65 EELLSKNYHLENEVARLKKLVGER 88

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 92.5 bits (231), Expect = 4e-26
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 11 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNL 70
                H  +    +PY C  C   F  K ++  H  +HTGEKP++C +CG  F++ +NL
Sbjct: 2  GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61

Query: 71 ITHLRKHTGYKPF 83
           TH R H+G KP+
Sbjct: 62 KTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 79.8 bits (198), Expect = 3e-21
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 40  SDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLR 99
                H+++   +KP+KC  C  +F    NL +H   HTG KP+ C +C   F R  +L+
Sbjct: 3   HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62

Query: 100 RHR 102
            H 
Sbjct: 63  THT 65

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 68.2 bits (168), Expect = 1e-16
 Identities = 21/55 (38%), Positives = 37/55 (67%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
          C +C  +F+    L++H  +H+  +PY C  CG +F++ +++K HT IH+GEKP+
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 41.3 bits (98), Expect = 3e-06
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 67  SSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
             +   H       KP+ C  C  +F+ K +L  H+
Sbjct: 2   GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 91.8 bits (229), Expect = 1e-25
 Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 21  HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHT 78
            + T       CGK + + S +K H   HTGEKP+ C    CG  F++S  L  H RKHT
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 79  GYKPFSCGLCDKAFQRKVDLRRHR 102
           G++PF C  CD+AF R   L  H 
Sbjct: 62  GHRPFQCQKCDRAFSRSDHLALHM 85

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 88.4 bits (220), Expect = 2e-24
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV 58
             CGKT+ +SS L  HL  H+  +PY C +  CG +F +  ++ +H   HTG +P +C 
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69

Query: 59 VCGKAFSQSSNLITHLRKH 77
           C +AFS+S +L  H+++H
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 91.0 bits (227), Expect = 2e-25
 Identities = 35/70 (50%), Positives = 43/70 (61%)

Query: 14 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
           S    IHS  +PY C  CGK F + S + +H  +HTGEKP+KC+ CGKAFSQ+S LI H
Sbjct: 2  SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

Query: 74 LRKHTGYKPF 83
           R HT     
Sbjct: 62 QRIHTSGPSS 71

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 79.8 bits (198), Expect = 4e-21
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query: 44  KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
             + IH+GEKP+ CV CGKAFS+SS L+ H R HTG KP+ C  C KAF +   L  H+
Sbjct: 4   GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 70  LITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
                  H+G KP+ C  C KAF R   L +H+
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ 34

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 91.0 bits (227), Expect = 2e-25
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 13 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE----KPHKCVVCGKAFSQSS 68
          +  +    H+  +PY C +C K F QK  +  H   +           C  CGK F++ +
Sbjct: 2  SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 69 NLITHLRKHTGYKPFSCGLCDKAF 92
           +  H     G           + 
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 81.0 bits (201), Expect = 2e-21
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 1  CKQCGKTFKRSSTLSTHLLIH----SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHK 56
          C  C KTF++   L  H   +         + C  CGK F +++ M +H     G    +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77

Query: 57 CVVCGKAF 64
              G + 
Sbjct: 78 GENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 75.6 bits (187), Expect = 2e-19
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 44  KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG----YKPFSCGLCDKAFQRKVDLR 99
                HTGEKP+ C  C K F Q   L  H +++         F C  C K F R+  + 
Sbjct: 5   SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64

Query: 100 RH 101
           RH
Sbjct: 65  RH 66

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 69  NLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +  +  R HTG KP++C  CDK F++K  L  H
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH 34

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 87.7 bits (218), Expect = 5e-24
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 7   TFKRSSTLSTHLLIHSDTRPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGK 62
           +   S             R + C    C K + + S +K H   HTGEKP+KC    C  
Sbjct: 2   SSGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55

Query: 63  AFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
            F++S  L  H RKHTG KPF CG+C+++F R   L  H 
Sbjct: 56  RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 84.6 bits (210), Expect = 1e-22
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 4  CGKTFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
          C K + +SS L  HL  H+  +PY C  + C  RF +  ++ +H   HTG KP +C VC 
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82

Query: 62 KAFSQSSNLITHLRKHT 78
          ++FS+S +L  H+++H 
Sbjct: 83 RSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 48.8 bits (117), Expect = 7e-09
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 2  KQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHT 50
          + C   F RS  L+ H   H+  +P+ C  C + F +   +  H   H 
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 85.6 bits (213), Expect = 2e-23
 Identities = 19/65 (29%), Positives = 26/65 (40%)

Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY 80
           S   P  C  C      K+ ++ H  IH  ++P KC  C     Q SNL  H++K  G 
Sbjct: 4  GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63

Query: 81 KPFSC 85
               
Sbjct: 64 MSGPS 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 76.4 bits (189), Expect = 6e-20
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 49  HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
            +   P KC  C  + S  + L  H R H   +PF C  C    ++  +L +H 
Sbjct: 4   GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 67.1 bits (165), Expect = 3e-16
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          C +C  +    + L  H  IH   RP+ C YC     Q S++ KH     G+     
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 7/27 (25%), Positives = 9/27 (33%)

Query: 75  RKHTGYKPFSCGLCDKAFQRKVDLRRH 101
              +   P  C  C  +   K  LR H
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIH 28

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 84.9 bits (211), Expect = 4e-23
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 21 HSDTRPYPCQY--CGKRFHQKSDMKKHTYI-HTGEKPHKC--VVCGKAFSQSSNLITHLR 75
           S +   PC +  CG+ F  +  +  H    H  +K   C    CGK+F+   +L  H++
Sbjct: 2  SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 76 KHTGYKPFSCGLCDKAF 92
           H+  + + C     + 
Sbjct: 62 LHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 76.4 bits (189), Expect = 7e-20
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 1  CKQCGKTFKRSSTLSTHLLI-HSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC 57
             CG+ F     L+ H    H   + + C    CGK F+ K  +K+H  +H+  + + C
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71

Query: 58 VVCGKAF 64
             G + 
Sbjct: 72 EFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 67.2 bits (165), Expect = 3e-16
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 49  HTGEKPHKCVV--CGKAFSQSSNLITHLR-KHTGYKPFSC--GLCDKAFQRKVDLRRHR 102
            +G     C    CG+ FS    L  H + +H   K FSC    C K+F  K  L+ H 
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 85.0 bits (211), Expect = 5e-23
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 27  YPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--VVCGKAFSQSSNLITHLRKHTGYKP 82
           Y C +  CGK F + + +K H + HT + P++C    C K FS  S L  H + H GY  
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 83  FSCGLCDKAFQRKVDLRRHRESQH 106
                C    +      +H    H
Sbjct: 62  KKDDSCSFVGKTWTLYLKHVAECH 85

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 84.5 bits (210), Expect = 6e-23
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 13 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE--KPHKCVVCGKAFSQSSNL 70
          +  +    HS  +PY C  C  RF Q   MK H      E      C  C    ++ S+L
Sbjct: 2  SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 71 ITHLRK-HTGYKPFS 84
            HLRK H+   P S
Sbjct: 62 GVHLRKQHSYSGPSS 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 83.0 bits (206), Expect = 2e-22
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 43  KKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG--YKPFSCGLCDKAFQRKVDLRR 100
                 H+GEKP++C +C   F+QS  +  H+ +        F C  CD    RK DL  
Sbjct: 4   GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63

Query: 101 HRESQHPG 108
           H   QH  
Sbjct: 64  HLRKQHSY 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 64.9 bits (159), Expect = 2e-15
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHS--DTRPYPCQYCGKRFHQKSDMKKHT-YIHTGEKPH 55
          C  C   F +S T+  H+L     +   + C +C     +KSD+  H    H+   P 
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.4 bits (98), Expect = 3e-06
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 69  NLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +  +  R H+G KP+ C +C   F +   ++ H 
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 82.8 bits (205), Expect = 3e-22
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 49  HTGEKPHKCVVCGKAFSQSSNLITHLRKHT---GYKPFSCGLCDKAFQRKVDLRRHRESQ 105
            +G    +C +CG    Q ++L  H RKH        F C  C K F++   +  HR   
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 106 HPGSPAQQHHISSTS 120
           HP         S  S
Sbjct: 62  HPALLLAPQESSGPS 76

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 71.3 bits (175), Expect = 9e-18
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHT---GEKPHKCVVCGKAFSQSSNLITHLRKH 77
           S +    C+ CG    QK+ +  H   H          C  CGK F +  ++  H  K 
Sbjct: 2  SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 78 TGYKPFSC 85
                + 
Sbjct: 62 HPALLLAP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 63.6 bits (155), Expect = 8e-15
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDT---RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          C+ CG T ++ ++L+ H   H++T     +PC++CGKRF +   +  H            
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69

Query: 58 VVCGKAFS 65
                 S
Sbjct: 70 QESSGPSS 77

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 76.8 bits (190), Expect = 4e-20
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK-HTG 79
          R + C+ C + F ++  +K+H   HT EKP+ C +C +AF++   LI H +K H+G
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 69.8 bits (172), Expect = 2e-17
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 53  KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
           +   C VC +AF++  +L  H R HT  KP+ CGLC++AF R+  L RH +  H G
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 76.4 bits (189), Expect = 7e-20
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKH--TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
                 Y C+ C + +   S+  +H  T      K + C  C K F++  N+  H++  
Sbjct: 4  TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

Query: 78 TG 79
            
Sbjct: 64 HK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 75.3 bits (186), Expect = 2e-19
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 48  IHTGEKPHKCVVCGKAFSQSSNLITHLR--KHTGYKPFSCGLCDKAFQRKVDLRRHRESQ 105
              GE  ++C VC + ++  SN   H         K + C  C K F RK ++  H +  
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

Query: 106 HP 107
           H 
Sbjct: 64  HK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 34.8 bits (81), Expect = 7e-04
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 75  RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
               G   + C +C + +    +  RH  + H
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 68.0 bits (167), Expect = 9e-17
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK-HTGYKPFSCGLCDKAF 92
               +  KP+ C  CGK FS+  +L  H+++ HT  +P  C +     
Sbjct: 3  SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-YIHTGEKPHKCVVCGKAFSQ 66
          +     S  +PY CQ CGK F +   +  H   +HT E+PHKC V     S 
Sbjct: 2  SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 67.5 bits (166), Expect = 1e-16
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
               TGEKP++C  C KAF+  SNL+ H R HTG    S G
Sbjct: 3  SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 50.2 bits (121), Expect = 7e-10
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  C K F+ KS++  H   HTGE     
Sbjct: 2  SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 10/29 (34%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +C K F   S L  H   H+       
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C KAF  K +L  H
Sbjct: 2   SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 67.6 bits (166), Expect = 1e-16
 Identities = 19/42 (45%), Positives = 22/42 (52%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                 GE+ H+C  CGK F Q+SN I H R HTG KP   
Sbjct: 2  SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +        R + C  CGK F Q S+  +H  IHTGEKP   
Sbjct: 2  SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK F ++S    H  IH+  +P   
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 66.7 bits (164), Expect = 2e-16
 Identities = 20/43 (46%), Positives = 21/43 (48%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
                TG KP+ C  CGKAF   S LI H R HTG    S G
Sbjct: 2  SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 49.8 bits (120), Expect = 9e-10
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F  KS +  HT  HTGE     
Sbjct: 2  SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.5 bits (83), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F+  S L  H   H+       
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C KAF+ K  L  H
Sbjct: 2   SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 66.8 bits (164), Expect = 2e-16
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+KC  CGK ++   NL  H + HTG +P   
Sbjct: 2  SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C+ CGK ++ K ++  H  +HTGE+P   
Sbjct: 2  SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C++CGK +     L  H  +H+  RP   
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C K +  K +L  H
Sbjct: 2   SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 66.4 bits (163), Expect = 4e-16
 Identities = 19/42 (45%), Positives = 20/42 (47%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TG KP+ C  C K FS  S LI H R HTG KP   
Sbjct: 2  SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 49.1 bits (118), Expect = 2e-09
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  C K F  KS +  H   HTG KP   
Sbjct: 2  SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C QC KTF   S L  H   H+  +P   
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C K F  K  L  H
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 66.0 bits (162), Expect = 4e-16
 Identities = 23/41 (56%), Positives = 25/41 (60%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                GEK +KC VCGK FSQSS+L TH R HTG KP   
Sbjct: 3  SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +        + Y C  CGK F Q S ++ H  +HTGEKP   
Sbjct: 2  SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 3e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK F +SS L TH  +H+  +P   
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 66.0 bits (162), Expect = 4e-16
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
                TGE P++C  CGK FS+   L++H + H+G    S G
Sbjct: 2  SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 46.7 bits (112), Expect = 1e-08
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +   PY C  CGK F +K  +  H   H+G+     
Sbjct: 2  SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R   L +H   HS       
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 66.0 bits (162), Expect = 5e-16
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+KC VCGKAF  SS+L+ H   H+G +P   
Sbjct: 2  SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 8e-10
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
               +  +PY CQ CGK F   S + +H  +H+GE+P   
Sbjct: 3  SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 5e-05
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C+ CGK F+ SS L  H  +HS  RP   
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 66.6 bits (163), Expect = 6e-16
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 4/73 (5%)

Query: 8  FKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFS 65
              + L  +++     RPY C    C +RF +  ++ +H  IHTG+KP +C +C + FS
Sbjct: 3  PHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60

Query: 66 QSSNLITHLRKHT 78
          +S +L TH+R HT
Sbjct: 61 RSDHLTTHIRTHT 73

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 62.7 bits (153), Expect = 2e-14
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 35  RFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAF 92
             H  +++  +  +    +P+ C V  C + FS+S  L  H+R HTG KPF C +C + F
Sbjct: 2   EPHPMNNLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59

Query: 93  QRKVDLRRHR 102
            R   L  H 
Sbjct: 60  SRSDHLTTHI 69

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 4  CGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHT 50
          C + F RS  L+ H+ IH+  +P+ C+ C + F +   +  H   HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 65.6 bits (161), Expect = 7e-16
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
            +GE P++C  CGKAF++   LI+H R H G    S G
Sbjct: 4  GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 49.0 bits (118), Expect = 2e-09
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
            S   PY C  CGK F++K  +  H   H GE     
Sbjct: 4  GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 36.7 bits (86), Expect = 9e-05
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R   L +H   H+       
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 65.6 bits (161), Expect = 7e-16
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                +GEKP+KC  CGKAF + ++L  H R HTGY+P   
Sbjct: 2  SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 9e-10
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +PY C  CGK FH+ + + +H  IHTG +P   
Sbjct: 2  SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R + L+ H  IH+  RP   
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 6e-04
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     +G KP+ C  C KAF R   L  HR
Sbjct: 2   SSGSSGSGEKPYKCSECGKAFHRHTHLNEHR 32

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 65.6 bits (161), Expect = 7e-16
 Identities = 19/42 (45%), Positives = 22/42 (52%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+ C VCGKAF  S++L  HLR HT       
Sbjct: 2  SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 2e-09
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
               +  +PY C  CGK F   + + +H  +HT E     
Sbjct: 3  SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK F  S+ L+ HL +H+       
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 65.6 bits (161), Expect = 7e-16
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TG++P++C+ CGKAF   S+LI H R HTG KP   
Sbjct: 2  SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 50.2 bits (121), Expect = 7e-10
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  RPY C  CGK F  KS +  H   HTGEKP   
Sbjct: 2  SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK FK  S+L  H   H+  +P   
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     TG +P+ C  C KAF+ K  L  HR
Sbjct: 2   SSGSSGTGQRPYECIECGKAFKTKSSLICHR 32

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 65.6 bits (161), Expect = 7e-16
 Identities = 21/41 (51%), Positives = 23/41 (56%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP +C  C KAF+  SNLI H R HTG KP   
Sbjct: 3  SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 2e-09
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C  C K F+ KS++  H   HTGEKP   
Sbjct: 2  SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KPF C  C KAF  K +L  H
Sbjct: 2   SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 65.6 bits (161), Expect = 7e-16
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               + EKP+KC  CGK +++  NL  H R H G K    
Sbjct: 3  SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +PY C+ CGK ++++ ++  H  +H GEK    
Sbjct: 2  SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C+ CGK + R   L  H  +H   +    
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 3e-04
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     +  KP+ C  C K + R+++L  H
Sbjct: 2   SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 65.6 bits (161), Expect = 8e-16
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGE P  C  CGK F+  +NLI H + HTG +P   
Sbjct: 3  SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 1e-09
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +   P+ C  CGK F  K+++  H  IHTGE+P   
Sbjct: 2  SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG  PF C  C K F  K +L  H
Sbjct: 2   SSGSSGTGENPFICSECGKVFTHKTNLIIH 31

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F   + L  H  IH+  RP   
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 65.2 bits (160), Expect = 9e-16
 Identities = 19/42 (45%), Positives = 22/42 (52%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
               +GEKP++C  CGKAF   S LI H R H G    S G
Sbjct: 3  SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 49.5 bits (119), Expect = 1e-09
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +PY C  CGK F  KS +  H   H G      
Sbjct: 2  SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 65.2 bits (160), Expect = 9e-16
 Identities = 21/41 (51%), Positives = 25/41 (60%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGE+P+ C VCGKAF+  SNLI H + HTG KP   
Sbjct: 3  SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 4e-10
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  RPY C  CGK F  +S++ KH  IHTGEKP   
Sbjct: 2  SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQ 30
          C  CGK F   S L  H  IH+  +P    
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG +P+ C +C KAF  + +L +H
Sbjct: 2   SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 65.3 bits (160), Expect = 1e-15
 Identities = 21/42 (50%), Positives = 24/42 (57%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKPH+C  CGK+FS +S LI H R HTG  P   
Sbjct: 2  SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C+ CGK F   S +  H  IHTGE P   
Sbjct: 2  SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C++CGK+F  +S L  H  IH+   P   
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 65.2 bits (160), Expect = 1e-15
 Identities = 18/41 (43%), Positives = 20/41 (48%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP KC +CGK+F   S L  H   HT  KP   
Sbjct: 3  SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C  CGK F  +S + +H+ +HT EKP   
Sbjct: 2  SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KPF C +C K+F  +  L RH
Sbjct: 2   SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK+F   S L+ H ++H+  +P   
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 65.2 bits (160), Expect = 1e-15
 Identities = 22/42 (52%), Positives = 24/42 (57%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP +C  CGK+FS SS L TH R HTG KP   
Sbjct: 2  SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 49.0 bits (118), Expect = 2e-09
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C  CGK F   S +  H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 37.5 bits (88), Expect = 5e-05
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK+F  SS L+TH  IH+  +P   
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 64.8 bits (159), Expect = 1e-15
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEK +KC  CGK FS++S L  H + HTG KP   
Sbjct: 2  SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 49.4 bits (119), Expect = 1e-09
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  + Y C  CGK F + S + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 36.7 bits (86), Expect = 9e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R+S LS H  IH+  +P   
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.8 bits (159), Expect = 1e-15
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               +GEKP+KC  CGK F+Q+S+L  H R HTG KP   
Sbjct: 3  SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +PY C  CGK F Q S +  H  IHTGEKP   
Sbjct: 2  SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F ++S L+ H  IH+  +P   
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 8e-04
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     +G KP+ C  C K F +   L  H 
Sbjct: 2   SSGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.8 bits (159), Expect = 1e-15
 Identities = 20/41 (48%), Positives = 23/41 (56%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP+KC VC K+F   S+L  H R HTG KP   
Sbjct: 3  SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  C K F   S +  H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 8e-05
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQ 30
          C  C K+F+  S+L+ H  IH+  +P    
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.8 bits (159), Expect = 1e-15
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                +GEKP+ C  CGKAF  S+ L+ H R HTG KP   
Sbjct: 2  SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +PY C YCGK F   +++ +H  IHTGEKP   
Sbjct: 2  SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK F  S+ L  H  IH+  +P   
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.9 bits (159), Expect = 1e-15
 Identities = 21/42 (50%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+KC  CGK F+Q+S+L  H R HTG KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F Q S +  H  IHTG KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F ++S L+ H  IH+  +P   
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C K F +   L  H
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.8 bits (159), Expect = 1e-15
 Identities = 23/42 (54%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+KC  CGKAFSQ+S L  H R HTG KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F Q S + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F ++S L+ H  IH+  +P   
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.9 bits (159), Expect = 1e-15
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEK + C  CGK+FS++  L+ H R H+G KP   
Sbjct: 3  SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  + Y C+ CGK F +   + KH  +H+GEKP   
Sbjct: 2  SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 5e-05
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          CK+CGK+F R+  L  H  +HS  +P   
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG K ++C  C K+F R   L +H
Sbjct: 2   SSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.9 bits (159), Expect = 1e-15
 Identities = 20/42 (47%), Positives = 21/42 (50%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+ C  CGKAF   S L  H R HTG KP   
Sbjct: 2  SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 7e-10
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C+ CGK F   S +++H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C++CGK F   S L  H  IH+  +P   
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP++C  C KAF     L+ H
Sbjct: 2   SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.8 bits (159), Expect = 1e-15
 Identities = 20/41 (48%), Positives = 23/41 (56%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP+ C  CGKAF+  SNLI H + HT  KP   
Sbjct: 3  SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F  +S++ KH  IHT +KP   
Sbjct: 2  SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F   S L  H  IH+  +P   
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C KAF  + +L +H
Sbjct: 2   SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.8 bits (159), Expect = 1e-15
 Identities = 21/41 (51%), Positives = 25/41 (60%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP++C  CGKAF+  SNL TH + HTG KP   
Sbjct: 3  SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 1e-09
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F  +S++  H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C KAF  + +L  H
Sbjct: 2   SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F   S L TH  IH+  +P   
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 22/42 (52%), Positives = 27/42 (64%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP++C  CGKAFSQ+++LI H R HTG KP   
Sbjct: 2  SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C+ CGK F Q + + +H  +HTGEKP   
Sbjct: 2  SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          CK+CGK F +++ L  H  +H+  +P   
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP++C VCGKAFS   +L  H R H+G KP   
Sbjct: 2  SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
               +  +PY C  CGK F  +  +  H  IH+G+KP   
Sbjct: 3  SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 6e-05
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK F    +LS H  IHS  +P   
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.4 bits (158), Expect = 2e-15
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+KC  CGK F+Q+S+L  H   HTG KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 7e-10
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F Q S + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F ++S L+ H  IH+  +P   
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 6e-04
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     TG KP+ C  C K F +   L RHR
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHR 32

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 21/42 (50%), Positives = 24/42 (57%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TG KP++C  CGKAFSQ+S L  H R HTG KP   
Sbjct: 2  SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 8e-10
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F Q S + +H  +HTGEKP   
Sbjct: 2  SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F ++S L+ H  +H+  +P   
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 21/42 (50%), Positives = 23/42 (54%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP KCV CGK FS+ S L  H + HTG KP   
Sbjct: 2  SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 49.1 bits (118), Expect = 2e-09
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C  CGK F ++S +  H  +HTGEKP   
Sbjct: 2  SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     TG KPF C  C K F R+  L  H 
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHH 32

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R S L+ H  +H+  +P   
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP++C +CGK+F++ S L  H + HTG KP   
Sbjct: 2  SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.5 bits (119), Expect = 1e-09
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F +KS +  H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 9e-05
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK+F + S L  H  IH+  +P   
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 9e-04
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C +C K+F +K  L  H
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP++C VC KAF+Q ++L  H + HTG KP   
Sbjct: 2  SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 9e-10
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C+ C K F QK+ + +H   HTGEKP   
Sbjct: 2  SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          CK C K F + + L+ H   H+  +P   
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGE+PHKC  CGK+F QS++LI H R HTG KP   
Sbjct: 3  SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  RP+ C  CGK F Q + + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK+F +S+ L  H  IH+  +P   
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     TG +P  C  C K+F +   L +H+
Sbjct: 2   SSGSSGTGERPHKCNECGKSFIQSAHLIQHQ 32

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 20/42 (47%), Positives = 22/42 (52%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TG KP+ C  CGKAFS  S+L TH   HTG KP   
Sbjct: 2  SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 8e-10
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F   S +  H  IHTGEKP   
Sbjct: 2  SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F   S+L+TH +IH+  +P   
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 19/41 (46%), Positives = 23/41 (56%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGE P++C  CGKAFS+   LI+H R H G KP   
Sbjct: 3  SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 1e-09
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +   PY C  CGK F +K  +  H   H GEKP   
Sbjct: 2  SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R   L +H   H+  +P   
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG  P+ C  C KAF RK  L  H
Sbjct: 2   SSGSSGTGENPYECHECGKAFSRKYQLISH 31

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.4 bits (158), Expect = 2e-15
 Identities = 21/42 (50%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                +GEKP KC  CGKAF Q+ +L +HLR HTG KP   
Sbjct: 2  SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +P+ C+ CGK F Q   +  H  IHTGEKP   
Sbjct: 2  SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          CK+CGK F+++  L++HL IH+  +P   
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 8e-04
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     +G KPF C  C KAF++ + L  H
Sbjct: 2   SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP+ C  CGK+F  +S L+ H R H+G KP   
Sbjct: 3  SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C+ CGK F   S + KH  +H+GEKP   
Sbjct: 2  SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 38.3 bits (90), Expect = 3e-05
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          CK+CGK+F+ +S L  H  +HS  +P   
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGE+ ++C  CGKAF++ S LI H R HTG KP   
Sbjct: 2  SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  R Y C  CGK F +KS +  H  IHTGEKP   
Sbjct: 2  SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R STL  H  IH+  +P   
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG + + C  C KAF RK  L  H
Sbjct: 2   SSGSSGTGERHYECSECGKAFARKSTLIMH 31

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                G+K  KC  C K F+QSS+L  H R HTG KP   
Sbjct: 3  SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-10
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  + + C  C K F Q S +  H  IHTGEKP   
Sbjct: 2  SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +C KTF +SS+L+ H  IH+  +P   
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 6e-04
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +      G K F C  C K F +   L  H+
Sbjct: 2   SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQ 32

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 20/42 (47%), Positives = 21/42 (50%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP  C+ CGKAFS    L  H R HTG KP   
Sbjct: 2  SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 4e-09
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C  CGK F     + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK F     L+ H  IH+  +P   
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 8e-04
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     TG KPF C  C KAF   + L +HR
Sbjct: 2   SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHR 32

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 21/41 (51%), Positives = 25/41 (60%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP++C  CGKAF+Q +NL  H R HTG KP   
Sbjct: 3  SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 8e-10
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F QK+++ +H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F + + L+ H  IH+  +P   
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ CG C KAF +K +L +H
Sbjct: 2   SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+KC  CGKAF++ S L  H + HTG +    
Sbjct: 2  SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 2e-09
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F +KS +  H   HTGE+    
Sbjct: 2  SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C KAF RK  L  H
Sbjct: 2   SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK F R S L  H   H+  R    
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 20/41 (48%), Positives = 24/41 (58%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               +GEKP KC  CGK F+Q+S L +H R HTG KP   
Sbjct: 3  SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +P+ C+ CGKRF Q S +  H  +HTGEKP   
Sbjct: 2  SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C++CGK F ++S L +H  +H+  +P   
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     +G KPF C  C K F +   L  H
Sbjct: 2   SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 22/41 (53%), Positives = 23/41 (56%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP+KC  CGKAF   SNL TH   HTG KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F   S++  H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F+  S L+TH +IH+  +P   
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C KAF+   +L  H
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 2e-15
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                +GEKP+KCV CGK + +  +L  H R HTG K    
Sbjct: 2  SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-10
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +PY C  CGK + ++ D+  H  +HTGEK    
Sbjct: 2  SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     +G KP+ C  C K ++R++DL  H
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK +KR   L  H  +H+  +    
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 64.1 bits (157), Expect = 3e-15
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TG+KP +C  CGK+F    NL+TH R HTG K    
Sbjct: 3  SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C +CGK F  K ++  H  IHTGEK    
Sbjct: 2  SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 37.5 bits (88), Expect = 5e-05
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK+F+    L TH  IH+  +  P 
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KPF C  C K+F+ K +L  H
Sbjct: 2   SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 3e-15
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP KC  CGK+++Q  +L  H R HTG KP   
Sbjct: 2  SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 1e-09
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C  CGK ++Q+  + +H  +HTGEKP   
Sbjct: 2  SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK++ +   L+ H  +H+  +P   
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KPF CG C K++ ++V L +H
Sbjct: 2   SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 64.1 bits (157), Expect = 3e-15
 Identities = 19/41 (46%), Positives = 21/41 (51%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP+KC  CGK F    +L TH   HTG KP   
Sbjct: 3  SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C+ CGK F  + D+  H  +HTGEKP   
Sbjct: 2  SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C++CGK F     L TH ++H+  +P   
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C K F  + DL  H
Sbjct: 2   SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 3e-15
 Identities = 19/42 (45%), Positives = 22/42 (52%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+KC  CGKAF   S+L  H   H+G KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 2e-09
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F  +S +  H   H+GEKP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F+  S+L+ H   HS  +P   
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 64.1 bits (157), Expect = 3e-15
 Identities = 20/42 (47%), Positives = 23/42 (54%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+ C  CGK+F Q S+L  H R HTG KP   
Sbjct: 2  SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F QKS + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     TG KP+ C  C K+F +K  L RHR
Sbjct: 2   SSGSSGTGEKPYICNECGKSFIQKSHLNRHR 32

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK+F + S L+ H  IH+  +P   
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.7 bits (156), Expect = 3e-15
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                +GE+P KC  CGK F + S+L  HLR H+  K    
Sbjct: 2  SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 2e-09
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  RP+ C  CGK F ++S +  H  +H+ EK    
Sbjct: 2  SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R S L+ HL +HS  +    
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.7 bits (156), Expect = 3e-15
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP++C VC KAFS  ++L  H R H+G KP   
Sbjct: 3  SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 1e-09
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  C K F   + + +H  +H+GEKP   
Sbjct: 2  SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  C K F   ++L+ H  +HS  +P   
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.7 bits (156), Expect = 4e-15
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGE+ ++C  CGKAF Q S L  H R H G KP   
Sbjct: 2  SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 8e-10
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  R Y C  CGK F QKS +  H  IH GEKP   
Sbjct: 2  SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F + STLS H  IH   +P   
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG + + C  C KAF +K  L  H
Sbjct: 2   SSGSSGTGERHYECSECGKAFIQKSTLSMH 31

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.7 bits (156), Expect = 4e-15
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP+KC  CGK F+Q+S+L+ H   HTG KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F Q S + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F ++S L  H  IH+  +P   
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 6e-04
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     TG KP+ C  C K F +   L RHR
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR 32

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.7 bits (156), Expect = 4e-15
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+KC  CGK F ++S+L  H   HTG KP   
Sbjct: 2  SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 1e-09
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F + S + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F+R+S L+ H LIH+  +P   
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C K F+R   L RH
Sbjct: 2   SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.7 bits (156), Expect = 4e-15
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                +GEKP +C  CGK F+Q+S+L +H R HTG KP   
Sbjct: 2  SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.9 bits (120), Expect = 1e-09
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +P+ C+ CGKRF Q S +  H  +HTGEKP   
Sbjct: 2  SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C++CGK F ++S L +H  +H+  +P   
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.7 bits (156), Expect = 4e-15
 Identities = 21/42 (50%), Positives = 25/42 (59%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP+KC  CGK F+Q+S+L  H R HTG KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 9e-10
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F Q S + +H  +HTG KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F ++S L+ H  +H+  +P   
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 63.7 bits (156), Expect = 4e-15
 Identities = 16/38 (42%), Positives = 19/38 (50%)

Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
            +GEKP  C  C KAFS  S L+ H + H   KP   
Sbjct: 4  GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 47.5 bits (114), Expect = 7e-09
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
            S  +P+ C  C K F  KS +  H   H  EKP   
Sbjct: 4  GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  C K F   S L  H   H++ +P   
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.7 bits (156), Expect = 4e-15
 Identities = 17/42 (40%), Positives = 20/42 (47%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                 GEKP++C  CGK+FS S  L  H   HT  KP   
Sbjct: 2  SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +        +PY C  CGK F     + +H   HT EKP   
Sbjct: 2  SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.8 bits (86), Expect = 9e-05
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK+F  S  L+ H + H+  +P   
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.3 bits (155), Expect = 4e-15
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP++C  CGK+F + S L  H R HTG  P   
Sbjct: 2  SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.5 bits (119), Expect = 1e-09
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F +KS +  H  IHTGE P   
Sbjct: 2  SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK+F + S L  H  IH+   P   
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C K+F +K  L  H
Sbjct: 2   SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 63.3 bits (155), Expect = 5e-15
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               +GEKP KC  CGK F  +S   +H R H+G KP   
Sbjct: 3  SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 49.5 bits (119), Expect = 1e-09
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +P+ C+ CGK F+  S    H   H+GEKP   
Sbjct: 2  SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCG 33
          C++CGK F  +S   +H   HS  +P      G
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.5 bits (80), Expect = 6e-04
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     +G KPF C  C K F        H
Sbjct: 2   SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.3 bits (155), Expect = 5e-15
 Identities = 20/41 (48%), Positives = 23/41 (56%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                GEKP+ C  CGKAFS  S LI H+R H+G KP   
Sbjct: 3  SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 2e-09
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F  KS +  H   H+GEKP   
Sbjct: 2  SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F   S L  H+  HS  +P   
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 9e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +      G KP+ C  C KAF  K  L  H
Sbjct: 2   SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.3 bits (155), Expect = 5e-15
 Identities = 20/41 (48%), Positives = 22/41 (53%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               +GEKP+ C  CGK FSQ S L  H R HTG KP   
Sbjct: 3  SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +PY C  CGK F QKS +  H   HTGEKP   
Sbjct: 2  SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGKTF + S LS H   H+  +P   
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.3 bits (155), Expect = 5e-15
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TG+KP+KC  CGK F+Q+S+L  H   HTG KP   
Sbjct: 3  SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F Q S + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F ++S L+ H  IH+  +P   
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +     TG KP+ C  C K F +   L RHR
Sbjct: 2   SSGSSGTGKKPYKCNECGKVFTQNSHLARHR 32

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.4 bits (155), Expect = 6e-15
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP+KC+ CGKAF  +S+   H R HTG +P   
Sbjct: 3  SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.9 bits (120), Expect = 1e-09
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F   S   +H  +HTG++P   
Sbjct: 2  SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F  +S+ + H  +H+  RP   
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 63.3 bits (155), Expect = 6e-15
 Identities = 20/41 (48%), Positives = 22/41 (53%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP+KC  CGK F  +S L  H R HTG KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 9e-10
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F   S + +H  IHTGEKP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F+ +S LS H  IH+  +P   
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 6e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C K F+    L RH
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 63.9 bits (156), Expect = 6e-15
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 11 SSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQ 66
          SS  S   +  S  R + C +  CGK + + S +K HT  HTGEKP  C    C + F++
Sbjct: 2  SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61

Query: 67 SSNLITHLRKH 77
          S  L  H R H
Sbjct: 62 SDELSRHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 57.4 bits (139), Expect = 2e-12
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 39  KSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQR 94
            S         +  + H C    CGK + +SS+L  H R HTG KPFSC    C++ F R
Sbjct: 2   SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61

Query: 95  KVDLRRHR 102
             +L RHR
Sbjct: 62  SDELSRHR 69

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 43.5 bits (103), Expect = 5e-07
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 4  CGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIH 49
          CGKT+ +SS L  H   H+  +P+ C +  C +RF +  ++ +H   H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.9 bits (154), Expect = 6e-15
 Identities = 21/42 (50%), Positives = 24/42 (57%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                TGEKP++C  CGKAFS  S+L TH   HTG KP   
Sbjct: 2  SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 2e-09
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F  +S +  H  IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 7e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C QCGK F   S+L+TH  IH+  +P   
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.9 bits (154), Expect = 6e-15
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP+KC  CGK+F+  S L  H + HTG +    
Sbjct: 3  SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-10
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +PY C  CGK F  KS ++ H   HTGE+    
Sbjct: 2  SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG KP+ C  C K+F  K  LR H
Sbjct: 2   SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C  CGK+F   S L  H   H+  R    
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.9 bits (154), Expect = 8e-15
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TG K  +C  CGKAF++ S L  H + HTG KP   
Sbjct: 3  SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 8e-10
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 15 STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
           +     +  + + C  CGK F +KS +  H  IHTGEKP   
Sbjct: 1  GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 7e-05
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R STLS H  IH+  +P   
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 14/30 (46%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
           +     TG K F C  C KAF RK  L  H
Sbjct: 2   SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.9 bits (154), Expect = 9e-15
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               +GE+P+ C  CGK F + S+LI HL++H   K    
Sbjct: 3  SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-10
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
               S  RPY C  CGK F + S + +H   H  EK    
Sbjct: 3  SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 6e-05
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F R S L  HL  H   +    
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 62.6 bits (153), Expect = 9e-15
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
           +    GEKP++C  CGKAFSQ  +LI H+R HTG  P S
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 45.3 bits (108), Expect = 5e-08
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
                  +PY C  CGK F QK  +  H  +HTG  P 
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.6 bits (153), Expect = 1e-14
 Identities = 19/41 (46%), Positives = 19/41 (46%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP KC  CGKAF   S LI H R H   K    
Sbjct: 3  SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-08
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P  C  CGK F  KS +  H   H  +K    
Sbjct: 2  SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          C +CGK F   S L  H   H D +    
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 62.2 bits (152), Expect = 1e-14
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
           +    GEKP+KC  CG  F Q ++L  H+  HTG  P S
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
                  +PY C+ CG RF Q + ++ H  IHTG  P 
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 62.2 bits (152), Expect = 1e-14
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                +G+KP++C  C K F Q  +L  H R HTG +    
Sbjct: 2  SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S  +PY C+ C K F Q   + +H  +HTGE+    
Sbjct: 2  SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 7e-05
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          CK+C KTF +   L+ H  +H+  R    
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 62.2 bits (152), Expect = 2e-14
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                +  K H+C  CG+ F+  S+L  H R HTG KP   
Sbjct: 2  SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     S T+ + C  CG+ F  KS + +H  IHTGEKP   
Sbjct: 2  SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 62.1 bits (152), Expect = 2e-14
 Identities = 17/40 (42%), Positives = 21/40 (52%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
           +    GEKP+ C +CG  F     L +HLR HTG  P S
Sbjct: 2  SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 51.3 bits (124), Expect = 2e-10
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
                  +PYPC+ CG RF     +K H  IHTG  P 
Sbjct: 2  SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPY 27
          C+ CG  F+   TL +HL IH+ + P 
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 61.8 bits (151), Expect = 2e-14
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                G  P+KC  C K+FS    L+ H R HT  KP   
Sbjct: 3  SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +   PY C  C K F  K  +  H  +HT EKP   
Sbjct: 2  SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 61.4 bits (150), Expect = 3e-14
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
                GEK  KC  C   FSQ+S+L  H   H G KP   
Sbjct: 3  SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +        + + C+ C   F Q S ++ H  +H GEKP   
Sbjct: 2  SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +      G K + C  CD  F +   LR H+
Sbjct: 2   SSGSSGMGEKTWKCRECDMCFSQASSLRLHQ 32

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 3e-14
 Identities = 17/42 (40%), Positives = 19/42 (45%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
               TGEKP +C  CG  FS S +L  HLR H    P    
Sbjct: 3  SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.3 bits (108), Expect = 5e-08
 Identities = 9/42 (21%), Positives = 15/42 (35%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C+ CG  F     + KH   H    P   
Sbjct: 2  SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 1e-05
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
          CK+CG  F  S +L  HL  H  T P   
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 61.4 bits (150), Expect = 3e-14
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK-HTGYKPFSC 85
               TG+KP++C+ CGKAF Q+++LI H R  HTG KP   
Sbjct: 3  SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 49.1 bits (118), Expect = 2e-09
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-YIHTGEKPHKC 57
          +     +  +PY C  CGK F Q + + +H  Y HTGEKP   
Sbjct: 2  SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 36.8 bits (86), Expect = 9e-05
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 72  THLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
           +     TG KP+ C  C KAF +   L RH    H G
Sbjct: 2   SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 62.7 bits (152), Expect = 4e-14
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKH-TYIHTGEKPHK--------CVVCGKAFSQSSNL 70
          I       P + C + F    ++  H T  H G             C   GK+F     L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 71 ITHLRKHTGYKPFSC 85
          + H+R HTG K    
Sbjct: 79 VNHIRVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 40.7 bits (95), Expect = 9e-06
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 48  IHTGEKPHKCVVCGKAFSQSSNLITHLRK-HTGYKPFS--------CGLCDKAFQRKVDL 98
           I   +       C + FS    L+TH+   H G    +        C    K+F+ K  L
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 99  RRH 101
             H
Sbjct: 79  VNH 81

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 59.1 bits (144), Expect = 2e-13
 Identities = 16/41 (39%), Positives = 17/41 (41%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
               +GEK H C  CGK F   S L  H R H G K    
Sbjct: 3  SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.7 bits (109), Expect = 4e-08
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
               S  + + C  CGK F   S ++ H  +H GEK    
Sbjct: 3  SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 58.4 bits (142), Expect = 4e-13
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
           +G++ ++C  CGK+F Q  +L  H R HTG  P S
Sbjct: 5  SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 44.9 bits (107), Expect = 7e-08
 Identities = 17/35 (48%), Positives = 18/35 (51%)

Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
           S  R Y CQ CGK F QK  +  H  IHTG  P 
Sbjct: 5  SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 35.2 bits (82), Expect = 3e-04
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPY 27
          C++CGK+F++  +L+ H  IH+ + P 
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 58.5 bits (142), Expect = 4e-13
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 45 HTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSC 85
               TGEKP  C    CG  FS+S  L  H R H+G KP   
Sbjct: 3  SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 46.9 bits (112), Expect = 1e-08
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 16 THLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC 57
          +     +  +P+ C +  CG RF +  ++ +H   H+G KP   
Sbjct: 2  SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 72  THLRKHTGYKPFSCG--LCDKAFQRKVDLRRHR 102
           +     TG KPF+C    C   F R  +L RHR
Sbjct: 2   SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 57.8 bits (139), Expect = 1e-12
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
          Y C+ CG R  + S +KKH   HT  +P+ C  C  +F    NL  H++     K
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 52.8 bits (126), Expect = 1e-10
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
          C++CG   K+ S L  H+  H+D RPY C YC   F  K ++ KH       K
Sbjct: 4  CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 44.7 bits (105), Expect = 1e-07
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 55  HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQ 105
           + C  CG    + S L  H+R HT  +P+ C  C+ +F+ K +L +H +S+
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 56.5 bits (137), Expect = 2e-12
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
           +    GE P+ C  CGK+F+Q  +L  H R  +   P S
Sbjct: 2  SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 45.0 bits (107), Expect = 7e-08
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHK 56
               PY C  CGK F Q+  +  H    +   P  
Sbjct: 6  SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 34.2 bits (79), Expect = 8e-04
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPY 27
          C QCGK+F +  +L+ H    S + P 
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPS 40

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 58.6 bits (141), Expect = 2e-12
 Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 5/103 (4%)

Query: 10  RSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-----TYIHTGEKPHKCVVCGKAF 64
             S+   +  I +    + C+ C   +    ++  H      Y     +         + 
Sbjct: 3   SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62

Query: 65  SQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHP 107
            +  +L+    K    K   C  C  +F+   DL  H      
Sbjct: 63  PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 51.7 bits (123), Expect = 1e-09
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 1   CKQCGKTFKRSSTLSTHLLI-----HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
           CK C   +     L+ H+         +              +K  + +       +K  
Sbjct: 22  CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81

Query: 56  KCVVCGKAFSQSSNLITHLRKHTGYK 81
           KC+ CG +F    +L  H+ K   Y+
Sbjct: 82  KCMYCGHSFESLQDLSVHMIKTKHYQ 107

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 5/78 (6%)

Query: 38  QKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR-----KHTGYKPFSCGLCDKAF 92
             S  K +  I TG    +C  C  A+     L  H+      +   ++  +      + 
Sbjct: 3   SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62

Query: 93  QRKVDLRRHRESQHPGSP 110
            RK  L      +     
Sbjct: 63  PRKRSLLEMEGKEDAQKV 80

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 65  SQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH-RESQHPGSPAQQ 113
           S  S+   +    TG   F C  C  A+   V+L  H  E+ H      +
Sbjct: 2   SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHE 51

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 55.3 bits (134), Expect = 6e-12
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
                T  K + C  CGKAF++  +L  H + HT     S G
Sbjct: 2  SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
               +D++ Y C  CGK F +   + +H  IHT +     
Sbjct: 3  SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 73  HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
                T  K ++C  C KAF R   L RH
Sbjct: 3   SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 53.5 bits (129), Expect = 3e-11
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
           +GEKP+ C  C + FS ++ L+ H + HT     S G
Sbjct: 5  SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.2 bits (92), Expect = 9e-06
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
           S  +PY C  C + F   + + +H  +HT +     
Sbjct: 5  SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 53.1 bits (127), Expect = 1e-10
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 7/74 (9%)

Query: 10 RSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSN 69
           S +      IH   R   C  CG  F ++S         +  K   C  C K   Q + 
Sbjct: 2  SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAA 54

Query: 70 LITHLRKHTGYKPF 83
          L       +G K  
Sbjct: 55 LNKDEGNESGKKTS 68

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 48.5 bits (115), Expect = 6e-09
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 40  SDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLR 99
               K   IH G++  KC  CG  F + S         +  K   C  C K   ++  L 
Sbjct: 4   GSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALN 56

Query: 100 RHRESQ 105
           +   ++
Sbjct: 57  KDEGNE 62

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 44.3 bits (104), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
          C +CG  F R STLS         +   C+ C K   Q++ + K     +G+K  
Sbjct: 21 CSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 47.2 bits (112), Expect = 1e-08
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC 88
              K   C +CGK F    +L  H   H+G KP+S G  
Sbjct: 7  GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 42.6 bits (100), Expect = 6e-07
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
              +   C+ CGK F     + +H   H+GEKP+     
Sbjct: 7  GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 35.3 bits (81), Expect = 3e-04
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYC 32
          C+ CGK F+    L+ H L HS  +PY     
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 45.6 bits (108), Expect = 5e-08
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
                 GE P KC  C + F+Q + L+ H R H      S G
Sbjct: 2  SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 35.2 bits (81), Expect = 4e-04
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
          +     +   P+ C  C + F Q++ + +H   H  +   
Sbjct: 2  SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 45.0 bits (107), Expect = 6e-08
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
           T   TG KP +C  C ++FS+S +L  H ++H
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 39.2 bits (92), Expect = 9e-06
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 73  HLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
             R  TG KPF C  CD++F R   L  HR
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 46.5 bits (109), Expect = 1e-07
 Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 3/108 (2%)

Query: 1   CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
                +  KR   L+               +  +   + S + +            C +C
Sbjct: 22  IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRL-LASKAISQFVCPLC 80

Query: 61  GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
              FS S +L  H+R         C +C K F        H   +H  
Sbjct: 81  LMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNI 126

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 44.1 bits (103), Expect = 6e-07
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 23  DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
           +   Y C+ C  +     +   H  +        C  C   F        H  K   YK 
Sbjct: 13  NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCE-YKK 69

Query: 83  FSCGLCDKAFQRKVDLRRHRESQH 106
            +C  C + F+    + RH+   H
Sbjct: 70  LTCLECMRTFKSSFSIWRHQVEVH 93

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 6/54 (11%), Positives = 13/54 (24%)

Query: 24  TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
                 +       +           +    ++C VC        +L  H+  H
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens} Length = 29

 Score = 37.8 bits (87), Expect = 3e-05
 Identities = 19/29 (65%), Positives = 26/29 (89%)

Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
          KP +CV+CGKAF+Q+S+LI H+R+HTG K
Sbjct: 1  KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 53 KPHKCVV--CGKAFSQSSNLITHLRKHTGYK 81
          +P  C    CGK F++S  L  H R HTG K
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31

 Score = 34.1 bits (79), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEK 53
          RP+ C +  CGKRF +  ++++H   HTGEK
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens} Length = 37

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 50 TGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYK 81
            +K H C +  CGK + ++S+L  HLR HTG +
Sbjct: 4  GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.95
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.95
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.94
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.94
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.92
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.9
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.89
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.88
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.88
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.88
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.87
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.87
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.84
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.83
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.83
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.83
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.82
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.82
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.82
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.81
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.81
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.8
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.79
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.79
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.77
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.76
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.76
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.76
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.76
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.75
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.75
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.72
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.71
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.71
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.7
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.7
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.7
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.69
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.69
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.69
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.69
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.68
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.68
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.67
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.67
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.66
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.66
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.66
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.66
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.65
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.65
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.65
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.63
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.62
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.6
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.6
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.59
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.56
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.55
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.55
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.54
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.54
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.53
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.52
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.52
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.51
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.49
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.46
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.45
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.45
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.42
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.4
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.37
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.36
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.36
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.34
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.34
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.34
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.34
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.34
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.32
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.31
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.28
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.27
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.26
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.26
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.26
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.24
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.24
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.24
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.23
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.22
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.21
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.2
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.2
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.19
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.19
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.18
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.18
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.16
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.16
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.16
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.15
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.14
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.14
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.14
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.14
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.13
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.12
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.12
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.11
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.11
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.1
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.1
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.09
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.09
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.09
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.05
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.04
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.02
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.02
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.01
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.99
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.99
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.96
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.96
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.96
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.88
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.88
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.86
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.82
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.79
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.78
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.75
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.73
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.73
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.73
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.72
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.69
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.68
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.68
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.66
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.65
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.65
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.64
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.64
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.62
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.62
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.62
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.58
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.57
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.57
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.56
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.56
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.95
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.54
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.54
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.93
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.85
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.42
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.42
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.42
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.42
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.37
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.37
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.34
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.33
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.31
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.31
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.3
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.29
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.29
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.28
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.26
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.26
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.23
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.21
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.2
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.5
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.16
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.45
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.15
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.13
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.21
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.88
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.71
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.56
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.45
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.34
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.04
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.5
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.31
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.24
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.13
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.94
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.2
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	93.56
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.24
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	92.66
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	92.36
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.26
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	92.15
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	92.03
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	91.96
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	90.61
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	90.37
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	89.97
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	89.7
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	89.13
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	88.48
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	86.95
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	86.34
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	85.5
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	84.16
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	83.62
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	83.2
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	82.49
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	81.16
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	80.02

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=1e-27  Score=139.55  Aligned_cols=109  Identities=31%  Similarity=0.671  Sum_probs=103.6

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHh---hcCCCceeccccccccCChhHHHHHHHHc
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYI---HTGEKPHKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~---~~~~~~~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      |++|++.|.....|..|++.|.++++|.|+.|++.|.....|..|+..   +.++++|.|..|+..|.....|..|++.|
T Consensus        10 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   89 (124)
T 2dlq_A           10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH   89 (124)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            889999999999999999999999999999999999999999999985   56788999999999999999999999999


Q ss_pred             CCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          78 TGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      .++++|.|+.|++.|.....|.+|++..|++.
T Consensus        90 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           90 TGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             CCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999877664

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.95  E-value=2.7e-28  Score=151.68  Aligned_cols=115  Identities=40%  Similarity=0.837  Sum_probs=88.8

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |+.|++.|.....|..|++.|.++++|.|+.|++.|.....|..|+..+.++++|.|..|+..|.....|..|++.|.++
T Consensus        52 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  131 (190)
T 2i13_A           52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE  131 (190)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCC
T ss_pred             CCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCC
Confidence            67777778777778888777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCCCCcccc
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHH  115 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  115 (134)
                      ++|.|+.|++.|.....|..|++.|++++++.+..
T Consensus       132 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  166 (190)
T 2i13_A          132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPE  166 (190)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTT
T ss_pred             CCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCC
Confidence            77777777777777777777777777777666543

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=3.4e-27  Score=146.70  Aligned_cols=110  Identities=43%  Similarity=0.869  Sum_probs=70.6

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |+.|++.|.....|..|++.|.++++|.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|++.|.++
T Consensus        80 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  159 (190)
T 2i13_A           80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE  159 (190)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCC
T ss_pred             CcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGSP  110 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (134)
                      ++|.|+.|++.|.....|..|++.|++++|
T Consensus       160 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~  189 (190)
T 2i13_A          160 KPYKCPECGKSFSRRDALNVHQRTHTGKKT  189 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTTC-----
T ss_pred             CCeECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            666666666666666666666666665544

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.94  E-value=3.7e-27  Score=137.33  Aligned_cols=110  Identities=40%  Similarity=0.794  Sum_probs=100.7

Q ss_pred             CC--cCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc--cccccCChhHHHHHHHH
Q psy2643           1 CK--QCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRK   76 (134)
Q Consensus         1 C~--~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~~~~~~~l~~h~~~   76 (134)
                      |+  .|++.|.....|..|+++| +.++|.|+.|++.|.....|..|+..|.++++|.|.+  |+..|.....|..|++.
T Consensus         8 C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~   86 (124)
T 1ubd_C            8 CPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI   86 (124)
T ss_dssp             CCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHH
Confidence            56  8999999999999999999 8889999999999999999999999999999999986  99999999999999999


Q ss_pred             cCCCCCcccC--cchhhccChHHHHHHHHhhCCCCCC
Q psy2643          77 HTGYKPFSCG--LCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        77 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      |.++++|.|+  .|++.|.+.+.|.+|++.|++++++
T Consensus        87 h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           87 HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             hCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            9999999996  5999999999999999999988764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.94  E-value=6e-27  Score=135.46  Aligned_cols=105  Identities=42%  Similarity=0.833  Sum_probs=100.8

Q ss_pred             CCc--CccccCChHHHHHHHHHcCCCCCccCc--ccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHH
Q psy2643           1 CKQ--CGKTFKRSSTLSTHLLIHSDTRPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus         1 C~~--C~~~f~~~~~l~~h~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      |..  |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.
T Consensus         9 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (119)
T 2jp9_A            9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT   88 (119)
T ss_dssp             CCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHH
Confidence            665  999999999999999999999999999  7999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccc--CcchhhccChHHHHHHHHhh
Q psy2643          77 HTGYKPFSC--GLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        77 ~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~  105 (134)
                      |.++++|.|  +.|++.|.+.+.|.+|++.|
T Consensus        89 h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           89 HTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             hcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999  89999999999999999864

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=140.13  Aligned_cols=113  Identities=37%  Similarity=0.699  Sum_probs=106.0

Q ss_pred             CCcCccccCChHHHHHHHHH-cCCCCC--------ccCcccccccCChhhHHHHHHhhcCCCceeccc--cccccCChhH
Q psy2643           1 CKQCGKTFKRSSTLSTHLLI-HSDTRP--------YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSN   69 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~-~~~~~~--------~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~~~~~~~   69 (134)
                      |..|++.|.....|..|++. |.+..+        +.|+.|++.|.....|..|++.|.++++|.|..  |++.|.....
T Consensus        28 C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~  107 (155)
T 2rpc_A           28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSEN  107 (155)
T ss_dssp             CCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHH
T ss_pred             cccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHH
Confidence            78899999999999999998 666554        789999999999999999999999999999998  9999999999


Q ss_pred             HHHHHHHcCCCCCcccCc--chhhccChHHHHHHHHhhCCCCCCcc
Q psy2643          70 LITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        70 l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (134)
                      |..|++.|.++++|.|+.  |++.|.....|.+|++.|++++++.+
T Consensus       108 L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c  153 (155)
T 2rpc_A          108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS  153 (155)
T ss_dssp             HHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCS
T ss_pred             HHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCC
Confidence            999999999999999997  99999999999999999999988764

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=1e-26  Score=136.91  Aligned_cols=97  Identities=27%  Similarity=0.457  Sum_probs=90.1

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChH
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKV   96 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~   96 (134)
                      |..++.|+++|.|++|++.|.....|..|++.|.++++|.|..|+..|.....|..|+++|.++++|.|+.|++.|...+
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~   92 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQ   92 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHH
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCcc
Q psy2643          97 DLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        97 ~l~~H~~~~h~~~~~~~  113 (134)
                      .|..|++.+|+++|...
T Consensus        93 ~L~~H~~~hh~~~p~~~  109 (133)
T 2lt7_A           93 FMSSHIKSVHSQDPSGD  109 (133)
T ss_dssp             HHHHHHHHHTCCCTTSS
T ss_pred             HHHHHhHHhcCCCCCCC
Confidence            99999999999877543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=9.5e-26  Score=135.93  Aligned_cols=115  Identities=35%  Similarity=0.667  Sum_probs=96.2

Q ss_pred             CCcCccccCChHHHHHHHH---HcCCCCCccCcc-----cccccCChhhHHHHHHhhcCCCceeccc--cccccCChhHH
Q psy2643           1 CKQCGKTFKRSSTLSTHLL---IHSDTRPYPCQY-----CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNL   70 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~---~~~~~~~~~c~~-----C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~~~~~~~l   70 (134)
                      |+.|++.|.+...|..|++   .|.++++|.|+.     |++.|.....|..|++.|.++++|.|.+  |++.|.....|
T Consensus         6 C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   85 (155)
T 2gli_A            6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENL   85 (155)
T ss_dssp             BTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHH
T ss_pred             cCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHH
Confidence            6789999999999999987   577788888764     3488888888999998888888899985  99999999999


Q ss_pred             HHHHHHcCCCCCcccCc--chhhccChHHHHHHH-HhhCCCCCCcccc
Q psy2643          71 ITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRHR-ESQHPGSPAQQHH  115 (134)
Q Consensus        71 ~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~h~~~~~~~~~  115 (134)
                      ..|++.|.++++|.|+.  |++.|.+.+.|.+|+ +.|.+++++.+..
T Consensus        86 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  133 (155)
T 2gli_A           86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL  133 (155)
T ss_dssp             HHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCS
T ss_pred             HHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCC
Confidence            99999998889999987  999999999999998 6666666666543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.92  E-value=7.6e-25  Score=136.06  Aligned_cols=113  Identities=30%  Similarity=0.636  Sum_probs=78.8

Q ss_pred             CcCccccCChHHHHHHHHHcCCCCCccC--cccccccCChhhHHHHHHhhcCCCceecc--ccccccCChhHHHHHH-HH
Q psy2643           2 KQCGKTFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCV--VCGKAFSQSSNLITHL-RK   76 (134)
Q Consensus         2 ~~C~~~f~~~~~l~~h~~~~~~~~~~~c--~~C~~~~~~~~~l~~h~~~~~~~~~~~C~--~C~~~~~~~~~l~~h~-~~   76 (134)
                      +.|++.|.....|..|++.|.++++|.|  +.|++.|.....|..|++.|.++++|.|.  .|+..|.....|..|+ +.
T Consensus        18 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~   97 (190)
T 1tf6_A           18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF   97 (190)
T ss_dssp             TTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTT
T ss_pred             CCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHh
Confidence            5677777777777777777777777777  66777777777777777777777777777  6777777777777776 44


Q ss_pred             c-CCCCCccc--CcchhhccChHHHHHHHHhhCCCCCCccc
Q psy2643          77 H-TGYKPFSC--GLCDKAFQRKVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        77 ~-~~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  114 (134)
                      | .++++|.|  +.|++.|.+...|..|++.|++++++.+.
T Consensus        98 h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  138 (190)
T 1tf6_A           98 HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP  138 (190)
T ss_dssp             SSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCC
T ss_pred             cCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCC
Confidence            4 35566777  66777777777777777777666666554

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=5.7e-25  Score=132.51  Aligned_cols=107  Identities=36%  Similarity=0.710  Sum_probs=101.5

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcc--cccccCChhhHHHHHHhhcCCCceeccc--cccccCChhHHHHHH-H
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHL-R   75 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~~~~~~~l~~h~-~   75 (134)
                      |..|++.|.....|..|++.|.++++|.|+.  |++.|.....|..|++.|.++++|.|..  |++.|.....|..|+ +
T Consensus        42 C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  121 (155)
T 2gli_A           42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR  121 (155)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHH
Confidence            4566799999999999999999999999985  9999999999999999999999999998  999999999999998 7


Q ss_pred             HcCCCCCcccCc--chhhccChHHHHHHHHhhCC
Q psy2643          76 KHTGYKPFSCGL--CDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        76 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  107 (134)
                      .|.++++|.|+.  |++.|...+.|..|++.+|+
T Consensus       122 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             hcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            899999999988  99999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=4.1e-25  Score=130.09  Aligned_cols=95  Identities=29%  Similarity=0.608  Sum_probs=89.5

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |++||+.|.....|..|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|++.++++
T Consensus        25 C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             ETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             C------CcccCcchhhccCh
Q psy2643          81 K------PFSCGLCDKAFQRK   95 (134)
Q Consensus        81 ~------~~~C~~C~~~f~~~   95 (134)
                      +      +|.|..|++.|...
T Consensus       105 ~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A          105 DPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             CTTSSSCCEEECCCCSSCCCC
T ss_pred             CCCCCCCCeecCCCCchhhhc
Confidence            4      58999999988654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=4.2e-24  Score=132.71  Aligned_cols=106  Identities=34%  Similarity=0.612  Sum_probs=99.9

Q ss_pred             CcCccccCChHHHHHHHHHcCCCCCccCc--ccccccCChhhHHHHH-Hhh-cCCCceec--cccccccCChhHHHHHHH
Q psy2643           2 KQCGKTFKRSSTLSTHLLIHSDTRPYPCQ--YCGKRFHQKSDMKKHT-YIH-TGEKPHKC--VVCGKAFSQSSNLITHLR   75 (134)
Q Consensus         2 ~~C~~~f~~~~~l~~h~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~-~~~-~~~~~~~C--~~C~~~~~~~~~l~~h~~   75 (134)
                      +.|++.|.....|..|+++|.++++|.|+  .|++.|.....|..|+ ..| .+.++|.|  ..|++.|.....|..|++
T Consensus        48 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~  127 (190)
T 1tf6_A           48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF  127 (190)
T ss_dssp             TTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHG
T ss_pred             CCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHH
Confidence            78999999999999999999999999999  8999999999999999 445 35778999  889999999999999999


Q ss_pred             HcCCCCCcccCc--chhhccChHHHHHHHHhhCC
Q psy2643          76 KHTGYKPFSCGL--CDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        76 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  107 (134)
                      .|.++++|.|+.  |++.|...+.|.+|++.|++
T Consensus       128 ~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          128 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             GGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             HhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            999999999988  99999999999999998877

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=1.3e-23  Score=117.21  Aligned_cols=92  Identities=37%  Similarity=0.646  Sum_probs=87.1

Q ss_pred             cCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHH
Q psy2643          21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRR  100 (134)
Q Consensus        21 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~  100 (134)
                      ..++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|++.|.....|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCCc
Q psy2643         101 HRESQHPGSPAQ  112 (134)
Q Consensus       101 H~~~~h~~~~~~  112 (134)
                      |++.|++++.+.
T Consensus        83 H~~~h~~~~~p~   94 (96)
T 2dmd_A           83 HLRSHTGDSGPS   94 (96)
T ss_dssp             HHTTCCSCCCCC
T ss_pred             HHHHhcCCCCCC
Confidence            999999887654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.89  E-value=7.5e-23  Score=116.01  Aligned_cols=91  Identities=30%  Similarity=0.633  Sum_probs=86.5

Q ss_pred             CCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHH
Q psy2643          22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH  101 (134)
Q Consensus        22 ~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H  101 (134)
                      ..+++|.|+.|++.|.....|..|++.|.++++|.|.+|+..|.....|..|++.|.++++|.|..|++.|.....|.+|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H   92 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH   92 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCCc
Q psy2643         102 RESQHPGSPAQ  112 (134)
Q Consensus       102 ~~~~h~~~~~~  112 (134)
                      ++.|++++++.
T Consensus        93 ~~~H~~~~~~~  103 (106)
T 2ee8_A           93 KTLHMQTSSPT  103 (106)
T ss_dssp             HHHTTSCCCCC
T ss_pred             HHHhCCCCCCc
Confidence            99999988765

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.88  E-value=3.1e-23  Score=118.35  Aligned_cols=92  Identities=38%  Similarity=0.763  Sum_probs=86.1

Q ss_pred             HcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHH
Q psy2643          20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLR   99 (134)
Q Consensus        20 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~   99 (134)
                      .|.++++|.| .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|++.|.....|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            4678899999 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCc
Q psy2643         100 RHRESQHPGSPAQ  112 (134)
Q Consensus       100 ~H~~~~h~~~~~~  112 (134)
                      +|++.++......
T Consensus        83 ~H~~~~~~~~~~~   95 (110)
T 2csh_A           83 RHVTSCTKSYEAA   95 (110)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHccccccch
Confidence            9999997764433

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.88  E-value=8.8e-23  Score=112.45  Aligned_cols=87  Identities=41%  Similarity=0.898  Sum_probs=79.9

Q ss_pred             CCCCccCc--ccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHH
Q psy2643          23 DTRPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRR  100 (134)
Q Consensus        23 ~~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~  100 (134)
                      ++++|.|+  .|++.|.....|..|++.|.++++|.|..|+..|.....|..|++.|.++++|.|+.|++.|...+.|.+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            35789998  5999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCC
Q psy2643         101 HRESQHPGS  109 (134)
Q Consensus       101 H~~~~h~~~  109 (134)
                      |++.|++++
T Consensus        81 H~~~H~~~k   89 (90)
T 1a1h_A           81 HTKIHLRQK   89 (90)
T ss_dssp             HHGGGGC--
T ss_pred             HHHHhcccC
Confidence            999998764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=2.2e-24  Score=124.10  Aligned_cols=101  Identities=17%  Similarity=0.250  Sum_probs=91.1

Q ss_pred             HHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHh--hcCCCcee-cccccccc--CChhHHHHHHHHcCCCCCcccC
Q psy2643          12 STLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYI--HTGEKPHK-CVVCGKAF--SQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        12 ~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~--~~~~~~~~-C~~C~~~~--~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      ..|..|+++|+++++|.|+.|++.|.....|..|++.  +.+.+++. |..|+..|  .....|..|++.|.++++|.|+
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~   84 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCM   84 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCS
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECC
Confidence            4577899999999999999999999999999999998  66666554 99999998  8999999999999999999999


Q ss_pred             cchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          87 LCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        87 ~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      .|++.|...+.|.+|++.+|......
T Consensus        85 ~C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           85 YCGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             SSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             CCCCccCCHHHHHHHHHHhCCcccCC
Confidence            99999999999999999998776543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.87  E-value=2e-22  Score=109.19  Aligned_cols=82  Identities=37%  Similarity=0.771  Sum_probs=75.9

Q ss_pred             CccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhh
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      +|.|+.|++.|.....|..|++.+.++++|.|..|+..|.....|..|++.|.++++|.|+.|++.|...+.|.+|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CC
Q psy2643         106 HP  107 (134)
Q Consensus       106 h~  107 (134)
                      ++
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=5.1e-22  Score=110.43  Aligned_cols=88  Identities=36%  Similarity=0.765  Sum_probs=82.0

Q ss_pred             CCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCC--CCcccCcchhhccChHHHH
Q psy2643          22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY--KPFSCGLCDKAFQRKVDLR   99 (134)
Q Consensus        22 ~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~--~~~~C~~C~~~f~~~~~l~   99 (134)
                      .++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.++  ++|.|+.|++.|.....|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999887  8999999999999999999


Q ss_pred             HHHHhhCCCC
Q psy2643         100 RHRESQHPGS  109 (134)
Q Consensus       100 ~H~~~~h~~~  109 (134)
                      .|++..|.+.
T Consensus        83 ~H~~~~H~~~   92 (95)
T 2yt9_A           83 GHIKQVHSGP   92 (95)
T ss_dssp             HHHHHTSCCC
T ss_pred             HHHHHhcCCC
Confidence            9998666554

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=1.5e-22  Score=114.98  Aligned_cols=94  Identities=17%  Similarity=0.360  Sum_probs=84.5

Q ss_pred             HHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHH
Q psy2643          18 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVD   97 (134)
Q Consensus        18 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~   97 (134)
                      ++.|.++++|.|+.|++.|.....|..|++.|.  ++|.|..|++.|.....|..|+. |.++++|.|..|++.|.....
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~   84 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFS   84 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHH
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHH
Confidence            467888999999999999999999999999874  78999999999999999999996 999999999999999999999


Q ss_pred             HHHHHH-hhCCCCCCccc
Q psy2643          98 LRRHRE-SQHPGSPAQQH  114 (134)
Q Consensus        98 l~~H~~-~~h~~~~~~~~  114 (134)
                      |.+|++ .|.+++++...
T Consensus        85 L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           85 IWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHcCCCCCCCCC
Confidence            999997 66666665543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=7.1e-22  Score=114.00  Aligned_cols=92  Identities=40%  Similarity=0.827  Sum_probs=87.5

Q ss_pred             CCCCCccCcc--cccccCChhhHHHHHHhhcCCCceecc--ccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHH
Q psy2643          22 SDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV--VCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVD   97 (134)
Q Consensus        22 ~~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~   97 (134)
                      .++++|.|+.  |++.|.....|..|++.|.++++|.|.  .|+..|.....|..|++.|.++++|.|+.|++.|.....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            4678999987  999999999999999999999999999  799999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCCcc
Q psy2643          98 LRRHRESQHPGSPAQQ  113 (134)
Q Consensus        98 l~~H~~~~h~~~~~~~  113 (134)
                      |..|++.|+++.++.+
T Consensus        82 l~~H~~~h~~~~~~~C   97 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSC   97 (119)
T ss_dssp             HHHHHHHHHTCCCEEC
T ss_pred             HHHHHHHhcCCCCeeC
Confidence            9999999999988776

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.86  E-value=3e-21  Score=109.36  Aligned_cols=85  Identities=41%  Similarity=0.818  Sum_probs=82.4

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |..|++.|.....|..|++.|.++++|.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|++.|.++
T Consensus        20 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSC
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHhCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccc
Q psy2643          81 KPFSC   85 (134)
Q Consensus        81 ~~~~C   85 (134)
                      ++|.+
T Consensus       100 ~~~~~  104 (106)
T 2ee8_A          100 SSPTA  104 (106)
T ss_dssp             CCCCC
T ss_pred             CCCcC
Confidence            98864

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=1.2e-20  Score=109.43  Aligned_cols=95  Identities=33%  Similarity=0.642  Sum_probs=88.2

Q ss_pred             CCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHH---cCCCCCcccCcchhhccChHHH
Q psy2643          22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK---HTGYKPFSCGLCDKAFQRKVDL   98 (134)
Q Consensus        22 ~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~---~~~~~~~~C~~C~~~f~~~~~l   98 (134)
                      .++++|.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|+..   +.++++|.|+.|++.|.....|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            4678899999999999999999999999999999999999999999999999985   5788999999999999999999


Q ss_pred             HHHHHhhCCCCCCccccc
Q psy2643          99 RRHRESQHPGSPAQQHHI  116 (134)
Q Consensus        99 ~~H~~~~h~~~~~~~~~~  116 (134)
                      ..|++.|+++.++.+...
T Consensus        83 ~~H~~~h~~~~~~~C~~C  100 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSC  100 (124)
T ss_dssp             HHHHHHHSSSCSEECSSS
T ss_pred             HHHHHHcCCCCCccCCCc
Confidence            999999999988876543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.9e-20  Score=104.22  Aligned_cols=83  Identities=41%  Similarity=0.771  Sum_probs=79.8

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |.+|++.|.....|..|++.|.++++|.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|++.|+++
T Consensus        11 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             BTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCc
Q psy2643          81 KPF   83 (134)
Q Consensus        81 ~~~   83 (134)
                      ++.
T Consensus        91 ~~p   93 (96)
T 2dmd_A           91 SGP   93 (96)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.83  E-value=1.6e-20  Score=101.60  Aligned_cols=79  Identities=94%  Similarity=1.527  Sum_probs=76.0

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      |+.|++.|.....|..|++.|.+++++.|+.|++.|.....|..|++.+.++++|.|..|+..|.....|..|++.|+|
T Consensus         4 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A            4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999998864

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.83  E-value=3e-20  Score=107.93  Aligned_cols=90  Identities=40%  Similarity=0.698  Sum_probs=83.5

Q ss_pred             CCCccCc--ccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCc--chhhccChHHHH
Q psy2643          24 TRPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLR   99 (134)
Q Consensus        24 ~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~   99 (134)
                      +++|.|+  .|++.|.+...|..|+..| +.++|.|..|+..|.....|..|++.|.++++|.|+.  |++.|.....|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            4679999  8999999999999999987 8899999999999999999999999999999999986  999999999999


Q ss_pred             HHHHhhCCCCCCccc
Q psy2643         100 RHRESQHPGSPAQQH  114 (134)
Q Consensus       100 ~H~~~~h~~~~~~~~  114 (134)
                      .|++.|+++.++.+.
T Consensus        82 ~H~~~h~~~~~~~C~   96 (124)
T 1ubd_C           82 THVRIHTGDRPYVCP   96 (124)
T ss_dssp             HHHHHHHCCCCCCCC
T ss_pred             HHHHHhCCCCceECC
Confidence            999999999888764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.82  E-value=5.9e-20  Score=102.89  Aligned_cols=85  Identities=42%  Similarity=0.816  Sum_probs=79.3

Q ss_pred             CCCCccCcc--cccccCChhhHHHHHHhhcCCCceecc--ccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHH
Q psy2643          23 DTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV--VCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDL   98 (134)
Q Consensus        23 ~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l   98 (134)
                      ..+.|.|..  |++.|.....|..|++.|.++++|.|.  .|+..|.....|..|++.|.++++|.|+.|++.|.....|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            356789986  999999999999999999999999996  6999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCC
Q psy2643          99 RRHRESQHP  107 (134)
Q Consensus        99 ~~H~~~~h~  107 (134)
                      ..|++.|.+
T Consensus        92 ~~H~~~H~~  100 (100)
T 2ebt_A           92 ALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            999998863

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.82  E-value=1.4e-20  Score=95.79  Aligned_cols=58  Identities=36%  Similarity=0.777  Sum_probs=51.7

Q ss_pred             CCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        52 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      ++||.|..|++.|.....|..|+++|.++++|.|..||++|...+.|.+|++.|.+++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6889999999999999999999999999999999999999999999999998887653

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.82  E-value=4.5e-20  Score=101.47  Aligned_cols=81  Identities=33%  Similarity=0.804  Sum_probs=76.4

Q ss_pred             CC--cCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcC
Q psy2643           1 CK--QCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus         1 C~--~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~   78 (134)
                      |+  .|++.|.....|..|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|+++|.
T Consensus         7 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A            7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             CCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHGGGG
T ss_pred             CCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            55  6999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy2643          79 GYK   81 (134)
Q Consensus        79 ~~~   81 (134)
                      +++
T Consensus        87 ~~k   89 (90)
T 1a1h_A           87 RQK   89 (90)
T ss_dssp             C--
T ss_pred             ccC
Confidence            875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.81  E-value=4.1e-20  Score=101.46  Aligned_cols=82  Identities=45%  Similarity=0.866  Sum_probs=77.0

Q ss_pred             CCCccCcc--cccccCChhhHHHHHHhhcCCCceecc--ccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHH
Q psy2643          24 TRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV--VCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLR   99 (134)
Q Consensus        24 ~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~   99 (134)
                      ..+|.|+.  |++.|.....|..|++.|.++++|.|.  .|+..|.....|..|++.|.++++|.|+.|++.|...+.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            45789998  999999999999999999999999997  59999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy2643         100 RHRESQ  105 (134)
Q Consensus       100 ~H~~~~  105 (134)
                      .|++.|
T Consensus        83 ~H~~~H   88 (89)
T 2wbs_A           83 LHMKRH   88 (89)
T ss_dssp             HHGGGG
T ss_pred             HHHHhh
Confidence            999876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.81  E-value=2.6e-20  Score=112.08  Aligned_cols=86  Identities=38%  Similarity=0.797  Sum_probs=83.1

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcc--cccccCChhhHHHHHHhhcCCCceeccc--cccccCChhHHHHHHHH
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRK   76 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~~~~~~~l~~h~~~   76 (134)
                      |..|++.|.....|..|+++|.++++|.|+.  |++.|.....|..|++.|.++++|.|.+  |++.|.....|..|+++
T Consensus        65 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~  144 (155)
T 2rpc_A           65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV  144 (155)
T ss_dssp             CTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTT
T ss_pred             CCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHH
Confidence            7899999999999999999999999999998  9999999999999999999999999997  99999999999999999


Q ss_pred             cCCCCCcccC
Q psy2643          77 HTGYKPFSCG   86 (134)
Q Consensus        77 ~~~~~~~~C~   86 (134)
                      |+++++|.|.
T Consensus       145 H~~~k~~~c~  154 (155)
T 2rpc_A          145 HTSDKSGPSS  154 (155)
T ss_dssp             TTSCCCSCSC
T ss_pred             hcCCCCCCCC
Confidence            9999999985

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.80  E-value=1.1e-20  Score=103.67  Aligned_cols=85  Identities=22%  Similarity=0.486  Sum_probs=79.0

Q ss_pred             CCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHH
Q psy2643          24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        24 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      +++|.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|++.+++ .+|.|+.|++.|.....|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            46899999999999999999999999999999999999999999999999999885 78999999999999999999998


Q ss_pred             hhCCCC
Q psy2643         104 SQHPGS  109 (134)
Q Consensus       104 ~~h~~~  109 (134)
                      ..|...
T Consensus        80 ~~h~~~   85 (88)
T 1llm_C           80 RLKKLV   85 (88)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            876543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=1.7e-19  Score=102.26  Aligned_cols=83  Identities=19%  Similarity=0.372  Sum_probs=78.2

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHH-HcCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR-KHTG   79 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~-~~~~   79 (134)
                      |.+|++.|.....|..|+++|.  ++|.|+.|++.|.....|..|+. |.++++|.|..|++.|.....|..|++ .|.+
T Consensus        19 C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           19 CRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             CCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcCC
Confidence            8899999999999999999983  68999999999999999999996 999999999999999999999999997 8999


Q ss_pred             CCCcccC
Q psy2643          80 YKPFSCG   86 (134)
Q Consensus        80 ~~~~~C~   86 (134)
                      +++|.+.
T Consensus        96 ~~~~~~~  102 (107)
T 1wjp_A           96 NNMAPTS  102 (107)
T ss_dssp             CCCCCCC
T ss_pred             CCCCCCC
Confidence            9999874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=3.9e-19  Score=98.65  Aligned_cols=80  Identities=43%  Similarity=0.862  Sum_probs=75.8

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCC--CceeccccccccCChhHHHHHHH-Hc
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE--KPHKCVVCGKAFSQSSNLITHLR-KH   77 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~--~~~~C~~C~~~~~~~~~l~~h~~-~~   77 (134)
                      |.+|++.|.....|..|++.|.++++|.|+.|++.|.....|..|++.+++.  ++|.|..|+..|.....|..|++ .|
T Consensus        10 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   89 (95)
T 2yt9_A           10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH   89 (95)
T ss_dssp             CSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTS
T ss_pred             CCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhc
Confidence            8899999999999999999999999999999999999999999999999987  89999999999999999999986 67


Q ss_pred             CCC
Q psy2643          78 TGY   80 (134)
Q Consensus        78 ~~~   80 (134)
                      .++
T Consensus        90 ~~~   92 (95)
T 2yt9_A           90 SGP   92 (95)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.77  E-value=6.2e-19  Score=95.80  Aligned_cols=78  Identities=32%  Similarity=0.624  Sum_probs=70.8

Q ss_pred             CccC--cccccccCChhhHHHHHHhhcCCCceeccc--cccccCChhHHHHHHHHcCCCCCcccCc---chhhccChHHH
Q psy2643          26 PYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGL---CDKAFQRKVDL   98 (134)
Q Consensus        26 ~~~c--~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~---C~~~f~~~~~l   98 (134)
                      ||.|  +.|++.|.....|..|++.|.++++|.|..  |++.|.....|..|++.|.+   |.|+.   |++.|...+.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            4778  889999999999999999999999999988  99999999999999999887   89999   99999999999


Q ss_pred             HHHHHhhC
Q psy2643          99 RRHRESQH  106 (134)
Q Consensus        99 ~~H~~~~h  106 (134)
                      .+|++.+|
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99998875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.1e-18  Score=99.33  Aligned_cols=78  Identities=40%  Similarity=0.798  Sum_probs=74.8

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      | .|++.|.....|..|++.|.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|..
T Consensus        13 C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           13 C-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             C-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             c-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHccc
Confidence            7 89999999999999999999999999999999999999999999999999999999999999999999999997653

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=2.9e-19  Score=99.92  Aligned_cols=78  Identities=17%  Similarity=0.291  Sum_probs=67.6

Q ss_pred             cCChhhHHHHHHhhcCCCceeccccccccC-ChhHHHHHHHHcCC-CCCcccCcchhhccChHHHHHHHHhhCCCCCCcc
Q psy2643          36 FHQKSDMKKHTYIHTGEKPHKCVVCGKAFS-QSSNLITHLRKHTG-YKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        36 ~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~-~~~~l~~h~~~~~~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (134)
                      +.....+..|++.|.++++|.|..|++.|. ....|..|++.|++ +++|.|..|++.|.....|.+|++.++++++...
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~   85 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA   85 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCC
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCC
Confidence            333445677888888899999999999999 99999999999888 8999999999999999999999999999887553

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.76  E-value=1.1e-18  Score=88.76  Aligned_cols=59  Identities=34%  Similarity=0.810  Sum_probs=55.5

Q ss_pred             CCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          23 DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        23 ~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      .|+||.|.+|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|+++.
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            37899999999999999999999999999999999999999999999999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.76  E-value=4.2e-18  Score=95.24  Aligned_cols=79  Identities=38%  Similarity=0.853  Sum_probs=74.6

Q ss_pred             CC--cCccccCChHHHHHHHHHcCCCCCccCc--ccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHH
Q psy2643           1 CK--QCGKTFKRSSTLSTHLLIHSDTRPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus         1 C~--~C~~~f~~~~~l~~h~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      |.  .|++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.
T Consensus        18 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             CCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             cCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHH
Confidence            55  4999999999999999999999999996  6999999999999999999999999999999999999999999998


Q ss_pred             cCC
Q psy2643          77 HTG   79 (134)
Q Consensus        77 ~~~   79 (134)
                      |.+
T Consensus        98 H~~  100 (100)
T 2ebt_A           98 HQN  100 (100)
T ss_dssp             HCC
T ss_pred             hCC
Confidence            864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=5.4e-19  Score=96.33  Aligned_cols=79  Identities=22%  Similarity=0.388  Sum_probs=55.9

Q ss_pred             HHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCC----CceeccccccccCChhHHHHHHHHcCCCCCcccCcch
Q psy2643          14 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE----KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCD   89 (134)
Q Consensus        14 l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~----~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~   89 (134)
                      +..|+++|.++++|.|..|++.|.....|..|++.++..    ++|.|..|++.|.....|..|++.|++++++.|..|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            345667777777777777777777777777777665554    5677777777777777777777777777777777776


Q ss_pred             hhc
Q psy2643          90 KAF   92 (134)
Q Consensus        90 ~~f   92 (134)
                      ..|
T Consensus        83 ~~~   85 (86)
T 1x6h_A           83 PSS   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.75  E-value=3e-18  Score=93.92  Aligned_cols=77  Identities=40%  Similarity=0.925  Sum_probs=73.7

Q ss_pred             CCc--CccccCChHHHHHHHHHcCCCCCccCc--ccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHH
Q psy2643           1 CKQ--CGKTFKRSSTLSTHLLIHSDTRPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus         1 C~~--C~~~f~~~~~l~~h~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      |+.  |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++.|.++++|.|..|+..|.....|..|++.
T Consensus         8 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A            8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHHHHh
Confidence            667  999999999999999999999999997  6999999999999999999999999999999999999999999988


Q ss_pred             c
Q psy2643          77 H   77 (134)
Q Consensus        77 ~   77 (134)
                      |
T Consensus        88 H   88 (89)
T 2wbs_A           88 H   88 (89)
T ss_dssp             G
T ss_pred             h
Confidence            7

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.8e-18  Score=92.07  Aligned_cols=72  Identities=25%  Similarity=0.636  Sum_probs=66.3

Q ss_pred             CCCCCccCcc--cccccCChhhHHHHHH-hhcCCCceeccc--cccccCChhHHHHHHHHcCCCCCcccCcchhhcc
Q psy2643          22 SDTRPYPCQY--CGKRFHQKSDMKKHTY-IHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQ   93 (134)
Q Consensus        22 ~~~~~~~c~~--C~~~~~~~~~l~~h~~-~~~~~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   93 (134)
                      +++++|.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.....|..|+++|.++++|.|..|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            4677888886  9999999999999998 788999999999  9999999999999999999999999999999883

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=3.2e-18  Score=98.16  Aligned_cols=86  Identities=23%  Similarity=0.402  Sum_probs=76.7

Q ss_pred             CCcCccccCChHHHHHHHHH--cCCCCCcc-Cccccccc--CChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHH
Q psy2643           1 CKQCGKTFKRSSTLSTHLLI--HSDTRPYP-CQYCGKRF--HQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~--~~~~~~~~-c~~C~~~~--~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      |.+|++.|.....|..|+++  +.+.+++. |+.|++.|  .....|..|++.|.++++|.|..|++.|.....|..|++
T Consensus        22 C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~  101 (115)
T 2dmi_A           22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI  101 (115)
T ss_dssp             BSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHH
Confidence            78999999999999999998  76666654 99999999  888889999999999999999999999999999999999


Q ss_pred             HcCCCCCcccC
Q psy2643          76 KHTGYKPFSCG   86 (134)
Q Consensus        76 ~~~~~~~~~C~   86 (134)
                      .++.......+
T Consensus       102 ~hh~~~~~~~~  112 (115)
T 2dmi_A          102 KTKHYQKVSGP  112 (115)
T ss_dssp             HTTTTTCSCCC
T ss_pred             HhCCcccCCCC
Confidence            98776655444

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=3.8e-18  Score=91.25  Aligned_cols=71  Identities=37%  Similarity=0.604  Sum_probs=61.4

Q ss_pred             HHHHHHhhcCCCceeccccccccCChhHHHHHHH-HcCCC-CCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          42 MKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR-KHTGY-KPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        42 l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~-~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      +..|++.|.++++|.|..|++.|.....|..|++ .|.++ ++|.|+.|++.|.....|.+|++.+|+...+.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            3457788888999999999999999999999987 57664 89999999999999999999999998876554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.5e-17  Score=87.34  Aligned_cols=64  Identities=25%  Similarity=0.492  Sum_probs=57.7

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      +.++++|.|..|++.|.....|..|++.|.++++|.|+.|++.|.....|.+|++.++++++..
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            5677889999999999999999999999999999999999999999999999999999887654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=3.5e-17  Score=91.02  Aligned_cols=76  Identities=14%  Similarity=0.272  Sum_probs=65.7

Q ss_pred             cccCChhhHHHHHHhhcCCCceecccccccc-CChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHH-HHhhCCCCCC
Q psy2643          34 KRFHQKSDMKKHTYIHTGEKPHKCVVCGKAF-SQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH-RESQHPGSPA  111 (134)
Q Consensus        34 ~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~-~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h~~~~~  111 (134)
                      ..|.....+..|++.+.++++|.|..|++.| .....|..|++.| ++++|.|..|++.|...+.|..| ++.|. ++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~-~~p~   91 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN-SLPS   91 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTC-CCSS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcC-CCCC
Confidence            4556666788888889999999999999999 8999999999999 99999999999999999999999 66554 4443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.70  E-value=4.7e-17  Score=88.27  Aligned_cols=74  Identities=31%  Similarity=0.653  Sum_probs=70.7

Q ss_pred             CcCccccCChHHHHHHHHHcCCCCCccCcc--cccccCChhhHHHHHHhhcCCCceeccc---cccccCChhHHHHHHHH
Q psy2643           2 KQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV---CGKAFSQSSNLITHLRK   76 (134)
Q Consensus         2 ~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~---C~~~~~~~~~l~~h~~~   76 (134)
                      +.|++.|.....|..|+++|.++++|.|+.  |++.|.....|..|++.|.+   |.|..   |+..|.....|..|++.
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A            7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHHHHHHh
Confidence            889999999999999999999999999988  99999999999999999987   99999   99999999999999988


Q ss_pred             cC
Q psy2643          77 HT   78 (134)
Q Consensus        77 ~~   78 (134)
                      |+
T Consensus        84 hh   85 (85)
T 2j7j_A           84 CH   85 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=4.2e-17  Score=86.47  Aligned_cols=62  Identities=34%  Similarity=0.717  Sum_probs=50.1

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSP  110 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (134)
                      ..++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|.+|++.|+++++
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            45667788888888888888888888888888888888888888888888888888877765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=5.2e-17  Score=86.75  Aligned_cols=64  Identities=39%  Similarity=0.725  Sum_probs=42.4

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      +.++++|.|..|++.|.....|..|++.|.++++|.|+.|++.|.....|.+|++.|++++++.
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~   76 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS   76 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            3445666666666666666666666666666666777667777766666777766666665543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=3e-17  Score=86.62  Aligned_cols=63  Identities=51%  Similarity=0.865  Sum_probs=56.0

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|++.|.....|.+|++.|+++.
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            456788899999999999999999999999999999999999999999999999999887664

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=5.1e-17  Score=86.78  Aligned_cols=66  Identities=53%  Similarity=0.863  Sum_probs=62.6

Q ss_pred             HcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        20 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      .+.++++|.|+.|++.|.....|..|++.|.++++|.|.+|+..|.....|..|+++|.++++|.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            355778999999999999999999999999999999999999999999999999999999999987

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=3.9e-17  Score=88.85  Aligned_cols=74  Identities=28%  Similarity=0.510  Sum_probs=66.9

Q ss_pred             HHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCC----CCcccCcchhhccChHHHHHHHHhhCCCCCCcccc
Q psy2643          42 MKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY----KPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHH  115 (134)
Q Consensus        42 l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~----~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  115 (134)
                      +..|++.|.++++|.|..|++.|.....|..|++.++.+    ++|.|..|++.|.....|..|++.++++.++....
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~   80 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGEN   80 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCC
Confidence            556888999999999999999999999999999987765    78999999999999999999999999998776543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.68  E-value=3.6e-17  Score=82.38  Aligned_cols=57  Identities=42%  Similarity=0.798  Sum_probs=48.2

Q ss_pred             CCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCC
Q psy2643          51 GEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        51 ~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      ++++|.|..|++.|.....|..|++.|.++++|.|+.|++.|.....|..|++.+|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            356889999999999999999999999999999999999999999999999988874

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.68  E-value=3.2e-18  Score=93.75  Aligned_cols=77  Identities=26%  Similarity=0.571  Sum_probs=72.6

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~   78 (134)
                      |++|++.|.....|..|+++|.++++|.|+.|++.|.....|..|+..+++ .+|.|..|+..|.....|..|++..+
T Consensus         6 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C            6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHHHH
Confidence            889999999999999999999999999999999999999999999998885 78999999999999999999998643

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.67  E-value=8.1e-17  Score=87.36  Aligned_cols=62  Identities=29%  Similarity=0.585  Sum_probs=55.2

Q ss_pred             hhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        48 ~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      .+...++|.|++|++.|.....|..|+++|+++++|.|..|++.|.....|.+|++..|...
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            34567789999999999999999999999999999999999999999999999987766543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1.7e-17  Score=92.71  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=72.0

Q ss_pred             ccCChHHHHHHHHHcCCCCCccCcccccccC-ChhhHHHHHHhhcC-CCceeccccccccCChhHHHHHHHHcCCCCCcc
Q psy2643           7 TFKRSSTLSTHLLIHSDTRPYPCQYCGKRFH-QKSDMKKHTYIHTG-EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS   84 (134)
Q Consensus         7 ~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~-~~~~l~~h~~~~~~-~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~   84 (134)
                      .+.....+..|+++|.++++|.|+.|++.|. ....|..|++.|++ +++|.|.+|++.|.....|..|++.|++++++.
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            4555567788999999999999999999999 99999999999998 899999999999999999999999999998764


Q ss_pred             c
Q psy2643          85 C   85 (134)
Q Consensus        85 C   85 (134)
                      .
T Consensus        85 ~   85 (98)
T 2gqj_A           85 A   85 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=1.5e-16  Score=85.11  Aligned_cols=64  Identities=30%  Similarity=0.581  Sum_probs=56.0

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCC---CCCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTG---YKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~---~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      |.++++|.|..|++.|.....|..|++.|.+   +++|.|..|++.|.....|.+|++.+|......
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5678899999999999999999999999885   889999999999999999999997777766443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.66  E-value=3.8e-17  Score=95.44  Aligned_cols=83  Identities=19%  Similarity=0.255  Sum_probs=71.6

Q ss_pred             CCCccCcccccccC------ChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHH
Q psy2643          24 TRPYPCQYCGKRFH------QKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVD   97 (134)
Q Consensus        24 ~~~~~c~~C~~~~~------~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~   97 (134)
                      ++.+.|.+|...|.      ....|..|+ .++++++|.|..|++.|.....|..|++.|  +++|.|+.|++.|...+.
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~  115 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDS  115 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHH
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHH
Confidence            34567888776665      455566666 588899999999999999999999999998  899999999999999999


Q ss_pred             HHHHHHhhCCCC
Q psy2643          98 LRRHRESQHPGS  109 (134)
Q Consensus        98 l~~H~~~~h~~~  109 (134)
                      |.+|++.+|+..
T Consensus       116 l~~H~~~h~~~~  127 (129)
T 2wbt_A          116 ALDHVCKKHNIC  127 (129)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHHCCcc
Confidence            999999998763

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=7.8e-17  Score=83.54  Aligned_cols=61  Identities=30%  Similarity=0.647  Sum_probs=54.6

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHH-c-CCCCCcccCcchhhccChHHHHHHHHhhCC
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRK-H-TGYKPFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~-~-~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      +.|.++++|.|..|++.|.....|..|++. | .++++|.|+.|++.|...+.|.+|++.+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            356778899999999999999999999987 6 588999999999999999999999999886

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.8e-16  Score=87.35  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=69.7

Q ss_pred             cccCChHHHHHHHHHcCCCCCccCccccccc-CChhhHHHHHHhhcCCCceeccccccccCChhHHHHH-HHHcCCCCCc
Q psy2643           6 KTFKRSSTLSTHLLIHSDTRPYPCQYCGKRF-HQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH-LRKHTGYKPF   83 (134)
Q Consensus         6 ~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~-~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h-~~~~~~~~~~   83 (134)
                      ..|.....+..|++.+.++++|.|+.|++.| .....|..|++.| ++++|.|.+|++.|.....|..| +++|.++..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCC
Confidence            4566778899999999999999999999999 9999999999999 99999999999999999999999 8888765444

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.65  E-value=4.2e-16  Score=82.56  Aligned_cols=65  Identities=40%  Similarity=0.890  Sum_probs=60.7

Q ss_pred             HHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCc
Q psy2643          19 LIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPF   83 (134)
Q Consensus        19 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (134)
                      ..+.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|.++++|
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            34667889999999999999999999999999999999999999999999999999999999876

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.65  E-value=2.5e-16  Score=79.26  Aligned_cols=56  Identities=30%  Similarity=0.628  Sum_probs=49.7

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      +|.|..|+..|.....|..|++.|.++++|.|+.|++.|...+.|.+|++.+++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            57899999999999999999999999999999999999999999999998887764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.5e-16  Score=89.21  Aligned_cols=66  Identities=23%  Similarity=0.364  Sum_probs=35.1

Q ss_pred             CCCCCccCcccccccCChhhHHHHHHh-h---cCCCceeccccccccCChhHHHHH-HHHcCCCCCcccCc
Q psy2643          22 SDTRPYPCQYCGKRFHQKSDMKKHTYI-H---TGEKPHKCVVCGKAFSQSSNLITH-LRKHTGYKPFSCGL   87 (134)
Q Consensus        22 ~~~~~~~c~~C~~~~~~~~~l~~h~~~-~---~~~~~~~C~~C~~~~~~~~~l~~h-~~~~~~~~~~~C~~   87 (134)
                      .++++|.|+.|++.|.....|..|++. |   .++++|.|..|++.|.....|..| +++|.++++|.|..
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~   84 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM   84 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEE
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCc
Confidence            344555555555555555555555542 4   234555555555555555555555 45555555555543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=5.1e-16  Score=83.14  Aligned_cols=64  Identities=27%  Similarity=0.593  Sum_probs=60.6

Q ss_pred             CcCccccCChHHHHHHHH-HcCCCCCccCcc--cccccCChhhHHHHHHhhcCCCceeccccccccC
Q psy2643           2 KQCGKTFKRSSTLSTHLL-IHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFS   65 (134)
Q Consensus         2 ~~C~~~f~~~~~l~~h~~-~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~   65 (134)
                      +.|++.|.....|..|++ .|.++++|.|+.  |++.|.....|..|++.|.++++|.|..|++.|.
T Consensus        13 ~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             TTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            459999999999999999 799999999999  9999999999999999999999999999999884

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=9.3e-16  Score=77.92  Aligned_cols=56  Identities=43%  Similarity=0.886  Sum_probs=49.3

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ++|.|..|++.|.....|..|++.|.++++|.|+.|++.|...+.|.+|++..|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            46889999999999999999999999999999999999999999999998555544

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=1.2e-15  Score=79.88  Aligned_cols=64  Identities=30%  Similarity=0.495  Sum_probs=59.7

Q ss_pred             HcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCc
Q psy2643          20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPF   83 (134)
Q Consensus        20 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (134)
                      .+.++++|.|+.|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.|+++++.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            3567899999999999999999999999999999999999999999999999999999988764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=1.3e-15  Score=85.37  Aligned_cols=67  Identities=15%  Similarity=0.176  Sum_probs=61.1

Q ss_pred             hcCCCceeccccccccCChhHHHHHHH-Hc---CCCCCcccCcchhhccChHHHHHH-HHhhCCCCCCcccc
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLR-KH---TGYKPFSCGLCDKAFQRKVDLRRH-RESQHPGSPAQQHH  115 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~-~~---~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h~~~~~~~~~  115 (134)
                      ..++++|.|..|++.|.....|..|++ .|   .++++|.|..|++.|...+.|.+| ++.|.+++++.+..
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~   84 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM   84 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCc
Confidence            467899999999999999999999998 58   678999999999999999999999 79999999887654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.8e-15  Score=79.67  Aligned_cols=64  Identities=53%  Similarity=0.873  Sum_probs=59.8

Q ss_pred             HHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          18 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        18 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      .++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.|.++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            3568899999999999999999999999999999999999999999999999999999988764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=8.4e-16  Score=82.00  Aligned_cols=67  Identities=34%  Similarity=0.613  Sum_probs=59.0

Q ss_pred             HHHHHHHcCCCCCccCcccccccCChhhHHHHHH-hhcCC-CceeccccccccCChhHHHHHHHHcCCC
Q psy2643          14 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTY-IHTGE-KPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        14 l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~~~~~-~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +..|+++|.++++|.|+.|++.|.....|..|++ .|.++ ++|.|..|++.|.....|..|++.+++.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            4458889999999999999999999999999997 45554 7999999999999999999999985543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.55  E-value=7.4e-15  Score=73.73  Aligned_cols=57  Identities=39%  Similarity=0.687  Sum_probs=49.0

Q ss_pred             CCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCC
Q psy2643          23 DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        23 ~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      ++++|.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|++.|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999999999999999999999988753

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.55  E-value=8.3e-15  Score=79.42  Aligned_cols=62  Identities=21%  Similarity=0.451  Sum_probs=56.0

Q ss_pred             HcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHH-HcCCCC
Q psy2643          20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR-KHTGYK   81 (134)
Q Consensus        20 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~   81 (134)
                      .+...+++.|++|++.|.....|..|++.|+++++|.|..|++.|.....|..|++ .|.+|.
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            45567789999999999999999999999999999999999999999999999975 577664

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3.5e-18  Score=90.28  Aligned_cols=70  Identities=23%  Similarity=0.338  Sum_probs=49.8

Q ss_pred             HHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          12 STLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        12 ~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      ..|..|+++|.++++|.|+.|++.|.....|..       +++|.|..|+..|.....|..|++.|.++++|.|+.|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            345567777777777777777777777665554       5667777777777777777777777777777777665

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=6.3e-15  Score=77.69  Aligned_cols=58  Identities=36%  Similarity=0.761  Sum_probs=50.2

Q ss_pred             hhcCCCceecc--ccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhh
Q psy2643          48 IHTGEKPHKCV--VCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        48 ~~~~~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      .+.++++|.|+  .|++.|.....|..|++.|.++++|.|+.|++.|...+.|.+|++.|
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            35677889997  59999999999999999999999999999999999999999998765

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.53  E-value=1.9e-14  Score=72.18  Aligned_cols=56  Identities=34%  Similarity=0.667  Sum_probs=45.9

Q ss_pred             CccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      ||.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|++.|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            46788888888888888888888888888888888888888888888888877664

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=7.1e-15  Score=76.00  Aligned_cols=61  Identities=21%  Similarity=0.496  Sum_probs=55.9

Q ss_pred             HHcCCCCCccCcccccccCChhhHHHHHHh-h-cCCCceeccccccccCChhHHHHHHHHcCC
Q psy2643          19 LIHSDTRPYPCQYCGKRFHQKSDMKKHTYI-H-TGEKPHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        19 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~-~-~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      ++|.++++|.|+.|++.|.....|..|++. | .++++|.|+.|++.|.....|..|++.+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            567889999999999999999999999988 5 488999999999999999999999998765

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.52  E-value=2e-14  Score=83.77  Aligned_cols=72  Identities=24%  Similarity=0.443  Sum_probs=64.2

Q ss_pred             cccCChHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643           6 KTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus         6 ~~f~~~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      ..|.....|..|+ .|+++++|.|+.|++.|.....|..|++.|  +++|.|..|++.|.....|..|++.|+++
T Consensus        55 ~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           55 QLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             GGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             cccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            3445667777776 688899999999999999999999999987  78999999999999999999999999876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.2e-14  Score=75.30  Aligned_cols=60  Identities=20%  Similarity=0.408  Sum_probs=52.3

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC-cchhhccChHHHHHHHHhhCCCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG-LCDKAFQRKVDLRRHRESQHPGSP  110 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~~h~~~~  110 (134)
                      ..+.++|.|..|++.|. ...|..|+++ .++++|.|+ .|++.|...+.|.+|++.|.+..+
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            35678899999999999 9999999998 899999999 999999999999999988766543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=4e-14  Score=75.55  Aligned_cols=66  Identities=23%  Similarity=0.405  Sum_probs=58.3

Q ss_pred             HcCCCCCccCcccccccCChhhHHHHHHhhcC---CCceeccccccccCChhHHHHHHH-HcCCCCCccc
Q psy2643          20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTG---EKPHKCVVCGKAFSQSSNLITHLR-KHTGYKPFSC   85 (134)
Q Consensus        20 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~---~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~~~~C   85 (134)
                      +|+++++|.|.+|++.|.....|..|++.|.+   +++|.|..|++.|.....|..|++ .|.++++...
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            36789999999999999999999999999985   889999999999999999999995 5666665543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.3e-13  Score=76.10  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=35.9

Q ss_pred             eeccccccccCChhHHHHHHHH-cCCCCC--------cccCcchhhccChHHHHHHHHhhCCCCCCcc
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRK-HTGYKP--------FSCGLCDKAFQRKVDLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~-~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (134)
                      +.|..|++.|.....|..|++. |.++++        |.|+.|++.|.....|.+|++.|.+++++.+
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS   93 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSS
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            4566666666666666666655 555554        6666666666666666666666666655543

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.6e-13  Score=69.50  Aligned_cols=56  Identities=36%  Similarity=0.790  Sum_probs=47.5

Q ss_pred             CCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHH-HHcCCC
Q psy2643          25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHL-RKHTGY   80 (134)
Q Consensus        25 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~-~~~~~~   80 (134)
                      ++|.|+.|++.|.....|..|++.|.++++|.|..|+..|.....|..|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            46888999999999888999988888888899999999999999999997 566654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2e-13  Score=75.38  Aligned_cols=62  Identities=27%  Similarity=0.514  Sum_probs=55.6

Q ss_pred             CCccCcccccccCChhhHHHHHHh-hcCCCc--------eeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          25 RPYPCQYCGKRFHQKSDMKKHTYI-HTGEKP--------HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        25 ~~~~c~~C~~~~~~~~~l~~h~~~-~~~~~~--------~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      ..+.|+.|++.|.....|..|++. |.++++        |.|..|++.|.....|..|+++|+++++|.|.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            447899999999999999999987 777766        89999999999999999999999999999985

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=2.9e-13  Score=71.18  Aligned_cols=59  Identities=42%  Similarity=0.957  Sum_probs=54.8

Q ss_pred             HcCCCCCccCc--ccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcC
Q psy2643          20 IHSDTRPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus        20 ~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~   78 (134)
                      ++.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            46788899997  599999999999999999999999999999999999999999998773

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.40  E-value=2.8e-13  Score=71.12  Aligned_cols=57  Identities=44%  Similarity=0.877  Sum_probs=49.5

Q ss_pred             hcCCCceeccc--cccccCChhHHHHHHHHcCCCCCcccCc--chhhccChHHHHHHHHhh
Q psy2643          49 HTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        49 ~~~~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~  105 (134)
                      ....++|.|..  |++.|.....|..|++.|.++++|.|..  |++.|.....|.+|++.|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34567889988  9999999999999999999999999965  999999999999998754

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.37  E-value=4.8e-13  Score=66.37  Aligned_cols=46  Identities=30%  Similarity=0.564  Sum_probs=39.1

Q ss_pred             hcCCCceeccccccccCChhHHHHHHH-HcCCCCCcccCcchhhccC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLR-KHTGYKPFSCGLCDKAFQR   94 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~~~~C~~C~~~f~~   94 (134)
                      +.++++|.|..|++.|.....|..|++ .|.++++|.|+.|++.|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            456788889999999999889999986 7888899999999988864

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.2e-15  Score=80.42  Aligned_cols=68  Identities=24%  Similarity=0.411  Sum_probs=60.1

Q ss_pred             hhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCccc
Q psy2643          40 SDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        40 ~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  114 (134)
                      ..|..|++.|.++++|.|..|++.|.....|..       +++|.|+.|++.|...+.|.+|++.|++++++.+.
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~   71 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPS   71 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCC
Confidence            346778889999999999999999999887765       78999999999999999999999999988877643

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3e-13  Score=64.81  Aligned_cols=44  Identities=50%  Similarity=0.735  Sum_probs=30.0

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666677777777777777777777777777777777665

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.2e-13  Score=64.71  Aligned_cols=44  Identities=39%  Similarity=0.548  Sum_probs=28.4

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            44555666666666666666666666666666666666666655

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.1e-13  Score=64.79  Aligned_cols=44  Identities=45%  Similarity=0.665  Sum_probs=29.2

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            44556666666666666666666666666666666666666655

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3e-13  Score=64.82  Aligned_cols=44  Identities=48%  Similarity=0.672  Sum_probs=29.3

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44556666666777777777776777777666666667766655

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.5e-13  Score=64.20  Aligned_cols=44  Identities=45%  Similarity=0.599  Sum_probs=29.9

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666677777777777777777777777777777776654

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.35  E-value=3.3e-13  Score=64.73  Aligned_cols=44  Identities=50%  Similarity=0.706  Sum_probs=27.0

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455556666666666666666666666666666666666554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3e-13  Score=64.85  Aligned_cols=44  Identities=43%  Similarity=0.647  Sum_probs=29.5

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            44556666667777777777777777777766766777766655

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.4e-13  Score=64.22  Aligned_cols=44  Identities=43%  Similarity=0.616  Sum_probs=29.7

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44556666667777777777777777777766766777776655

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3e-13  Score=64.83  Aligned_cols=44  Identities=43%  Similarity=0.589  Sum_probs=26.3

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            34445555666666666666666666666666666666666554

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.9e-13  Score=64.42  Aligned_cols=44  Identities=41%  Similarity=0.547  Sum_probs=28.0

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455566666666666666666666666666666666666654

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=4e-13  Score=63.77  Aligned_cols=43  Identities=37%  Similarity=0.549  Sum_probs=26.5

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445556666666666666666666666666666666666554

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.34  E-value=3.6e-13  Score=64.56  Aligned_cols=44  Identities=43%  Similarity=0.562  Sum_probs=28.4

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44555666666666666666666666666666666666666654

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.8e-13  Score=64.42  Aligned_cols=44  Identities=39%  Similarity=0.505  Sum_probs=26.4

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44455555666666666666666666666666666666666554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4e-13  Score=64.39  Aligned_cols=44  Identities=43%  Similarity=0.695  Sum_probs=30.0

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            44556666677777777777777777777777777777777655

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.1e-13  Score=64.35  Aligned_cols=44  Identities=45%  Similarity=0.603  Sum_probs=29.9

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            44556666667777777777777777777777777777776665

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.34  E-value=3.1e-13  Score=64.75  Aligned_cols=44  Identities=43%  Similarity=0.580  Sum_probs=29.1

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666666666666666666666666666666666666655

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.34  E-value=4.3e-13  Score=64.31  Aligned_cols=44  Identities=48%  Similarity=0.662  Sum_probs=26.8

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455556666666666666666666666666666666666554

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.1e-13  Score=64.80  Aligned_cols=44  Identities=45%  Similarity=0.517  Sum_probs=28.4

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44555666666666666666666666666666666666666655

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.4e-13  Score=63.92  Aligned_cols=44  Identities=41%  Similarity=0.642  Sum_probs=29.1

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666666666666666666666666666666666666655

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.4e-13  Score=64.65  Aligned_cols=44  Identities=34%  Similarity=0.516  Sum_probs=30.0

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666667777777777777777777777777777777665

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.7e-13  Score=64.49  Aligned_cols=44  Identities=48%  Similarity=0.692  Sum_probs=27.7

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455566666666666666666666666666666666666654

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.6e-13  Score=64.16  Aligned_cols=44  Identities=45%  Similarity=0.629  Sum_probs=27.1

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34455556666666666666666666666666666666666554

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.6e-13  Score=64.14  Aligned_cols=44  Identities=43%  Similarity=0.550  Sum_probs=30.6

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666777777777777777777777777777777777665

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.1e-13  Score=64.36  Aligned_cols=44  Identities=39%  Similarity=0.545  Sum_probs=26.8

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34455556666666666666666666666666666666666554

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.34  E-value=3.4e-13  Score=64.64  Aligned_cols=44  Identities=36%  Similarity=0.441  Sum_probs=25.4

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            34445555556666666666666666666656666666665554

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.4e-13  Score=63.95  Aligned_cols=44  Identities=45%  Similarity=0.671  Sum_probs=27.2

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34455566666666666666666666666666666666666554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.2e-13  Score=64.74  Aligned_cols=44  Identities=48%  Similarity=0.706  Sum_probs=27.7

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44455566666666666666666666666666666666666554

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.1e-13  Score=64.00  Aligned_cols=44  Identities=43%  Similarity=0.582  Sum_probs=30.0

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44556666677777777777777777777777777777777655

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.3e-13  Score=64.69  Aligned_cols=44  Identities=34%  Similarity=0.536  Sum_probs=27.8

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            44455566666666666666666666666666666666666654

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.3e-13  Score=64.26  Aligned_cols=44  Identities=45%  Similarity=0.661  Sum_probs=27.8

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            44455566666666666666666666666666666666666654

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.9e-13  Score=64.06  Aligned_cols=44  Identities=45%  Similarity=0.662  Sum_probs=27.8

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44555666666666666666666666666666666666666654

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4.4e-13  Score=64.20  Aligned_cols=44  Identities=36%  Similarity=0.431  Sum_probs=30.4

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666777777777777777777777777777777777665

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.9e-13  Score=64.41  Aligned_cols=44  Identities=52%  Similarity=0.679  Sum_probs=25.8

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34445555566666666666666666666666666666666554

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=5.4e-13  Score=63.92  Aligned_cols=44  Identities=43%  Similarity=0.551  Sum_probs=26.8

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34445556666666666666666666666666666666666554

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=7.4e-13  Score=63.42  Aligned_cols=44  Identities=39%  Similarity=0.600  Sum_probs=29.7

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34556666667777777777777777777777777777776655

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.33  E-value=5.6e-13  Score=63.85  Aligned_cols=44  Identities=41%  Similarity=0.598  Sum_probs=27.7

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44455566666666666666666666666666666666666655

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.4e-13  Score=63.93  Aligned_cols=43  Identities=35%  Similarity=0.430  Sum_probs=24.3

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3445555555555555555555555555555555555555544

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.1e-13  Score=64.00  Aligned_cols=44  Identities=39%  Similarity=0.558  Sum_probs=30.3

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            44556666677777777777777777777777777777777665

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1e-12  Score=67.82  Aligned_cols=59  Identities=29%  Similarity=0.557  Sum_probs=52.9

Q ss_pred             CCCCCccCcccccccCChhhHHHHHHhhcCCCceecc-ccccccCChhHHHHHHHHcCCCCC
Q psy2643          22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCV-VCGKAFSQSSNLITHLRKHTGYKP   82 (134)
Q Consensus        22 ~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~-~C~~~~~~~~~l~~h~~~~~~~~~   82 (134)
                      .++++|.|+.|++.|. ...|..|++. .++++|.|. .|++.|.....|..|+++|...++
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4678899999999999 9999999998 999999999 999999999999999998866543

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=7.5e-13  Score=63.41  Aligned_cols=44  Identities=32%  Similarity=0.391  Sum_probs=28.8

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455666666666666666666666666666666666666655

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.4e-13  Score=63.66  Aligned_cols=44  Identities=45%  Similarity=0.603  Sum_probs=29.4

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            44556666667777777777777777777766766777766655

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.31  E-value=9.4e-13  Score=63.07  Aligned_cols=44  Identities=34%  Similarity=0.453  Sum_probs=28.9

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455666666666676666666666666666666666666655

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6e-13  Score=63.79  Aligned_cols=43  Identities=44%  Similarity=0.658  Sum_probs=23.8

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3444555555555555555555555555555555555555544

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.7e-13  Score=64.51  Aligned_cols=44  Identities=48%  Similarity=0.643  Sum_probs=27.3

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44455566666666666666666666666666666666666554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.1e-13  Score=64.80  Aligned_cols=44  Identities=43%  Similarity=0.625  Sum_probs=26.7

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455556666666666666666666666666666666666554

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.4e-13  Score=63.23  Aligned_cols=43  Identities=49%  Similarity=0.734  Sum_probs=26.1

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGL   87 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   87 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4445555666666666666666666666666666666666654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.8e-13  Score=63.18  Aligned_cols=43  Identities=40%  Similarity=0.529  Sum_probs=26.6

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3445556666666666666666666666666666666666554

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.4e-12  Score=62.68  Aligned_cols=44  Identities=45%  Similarity=0.690  Sum_probs=26.9

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHH-HcCCCCCcccCcc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLR-KHTGYKPFSCGLC   88 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~~~~C~~C   88 (134)
                      |++.|.++++|.|..|++.|.....|..|++ .|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            3445555666666666666666666666666 6666666666554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=62.76  Aligned_cols=44  Identities=39%  Similarity=0.628  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.3e-12  Score=62.58  Aligned_cols=44  Identities=30%  Similarity=0.503  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|+++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.5e-12  Score=62.26  Aligned_cols=45  Identities=31%  Similarity=0.503  Sum_probs=41.9

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.1e-12  Score=62.27  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=41.0

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45778999999999999999999999999999999999999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.27  E-value=1.3e-12  Score=62.55  Aligned_cols=44  Identities=32%  Similarity=0.579  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.27  E-value=1.5e-12  Score=62.38  Aligned_cols=45  Identities=33%  Similarity=0.621  Sum_probs=41.9

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.27  E-value=1.3e-12  Score=62.53  Aligned_cols=44  Identities=25%  Similarity=0.416  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            67789999999999999999999999999999999999999887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=62.26  Aligned_cols=44  Identities=27%  Similarity=0.514  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56789999999999999999999999999999999999999887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.2e-12  Score=61.76  Aligned_cols=43  Identities=49%  Similarity=0.728  Sum_probs=25.4

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGL   87 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   87 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3444555566666666666666666666666666666666554

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.2e-12  Score=62.66  Aligned_cols=45  Identities=29%  Similarity=0.597  Sum_probs=42.0

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.27  E-value=1.3e-12  Score=62.59  Aligned_cols=45  Identities=33%  Similarity=0.567  Sum_probs=42.0

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=62.48  Aligned_cols=44  Identities=36%  Similarity=0.589  Sum_probs=41.7

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=62.27  Aligned_cols=45  Identities=29%  Similarity=0.606  Sum_probs=41.9

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=62.56  Aligned_cols=44  Identities=36%  Similarity=0.548  Sum_probs=41.7

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|+++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=62.41  Aligned_cols=44  Identities=32%  Similarity=0.566  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.2e-12  Score=62.75  Aligned_cols=44  Identities=34%  Similarity=0.534  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.5e-12  Score=62.29  Aligned_cols=44  Identities=39%  Similarity=0.652  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|+++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=62.15  Aligned_cols=45  Identities=33%  Similarity=0.542  Sum_probs=42.0

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|+++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.3e-12  Score=62.56  Aligned_cols=44  Identities=41%  Similarity=0.613  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.3e-12  Score=62.55  Aligned_cols=44  Identities=41%  Similarity=0.665  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.5e-12  Score=62.36  Aligned_cols=45  Identities=36%  Similarity=0.578  Sum_probs=42.0

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.26  E-value=9.5e-13  Score=65.27  Aligned_cols=49  Identities=20%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             ccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCC
Q psy2643          63 AFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        63 ~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      .|.....|..|++.|.++++|.|..|++.|...+.|.+|++.|.+++++
T Consensus         5 ~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            5 RAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            4555556666777777777777777777777777777777777766553

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=62.04  Aligned_cols=44  Identities=34%  Similarity=0.521  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66789999999999999999999999999999999999999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.9e-12  Score=62.03  Aligned_cols=44  Identities=30%  Similarity=0.561  Sum_probs=41.4

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56788999999999999999999999999999999999999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=62.22  Aligned_cols=45  Identities=38%  Similarity=0.655  Sum_probs=42.0

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999886

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=61.99  Aligned_cols=45  Identities=38%  Similarity=0.682  Sum_probs=42.1

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999887

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=3.5e-12  Score=61.64  Aligned_cols=42  Identities=33%  Similarity=0.585  Sum_probs=33.4

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      +..+++|.|..|++.|.....|..|+++|.++++|.|..|+|
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            455677888888888888888888888888888888888875

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.2e-12  Score=62.65  Aligned_cols=44  Identities=36%  Similarity=0.620  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.26  E-value=1.2e-12  Score=62.62  Aligned_cols=45  Identities=31%  Similarity=0.469  Sum_probs=42.0

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=62.13  Aligned_cols=44  Identities=32%  Similarity=0.490  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|+++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.5e-12  Score=62.30  Aligned_cols=44  Identities=34%  Similarity=0.607  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66789999999999999999999999999999999999999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.5e-12  Score=62.39  Aligned_cols=45  Identities=31%  Similarity=0.426  Sum_probs=42.0

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=4.4e-12  Score=60.40  Aligned_cols=41  Identities=34%  Similarity=0.575  Sum_probs=28.6

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcch
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCD   89 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~   89 (134)
                      |.++++|.|..|++.|.....|..|++.|.++++|.|+.||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            45566677777777777777777777777777777777664

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=62.30  Aligned_cols=44  Identities=32%  Similarity=0.543  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.8e-12  Score=62.07  Aligned_cols=44  Identities=34%  Similarity=0.634  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.25  E-value=1.7e-12  Score=62.13  Aligned_cols=44  Identities=34%  Similarity=0.569  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=62.32  Aligned_cols=44  Identities=36%  Similarity=0.660  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788999999999999999999999999999999999999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.4e-12  Score=62.46  Aligned_cols=44  Identities=36%  Similarity=0.539  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|++|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.1e-12  Score=61.82  Aligned_cols=45  Identities=38%  Similarity=0.669  Sum_probs=42.2

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-12  Score=62.54  Aligned_cols=44  Identities=34%  Similarity=0.603  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|+++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.1e-12  Score=61.78  Aligned_cols=44  Identities=32%  Similarity=0.502  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56789999999999999999999999999999999999999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.7e-12  Score=62.08  Aligned_cols=45  Identities=24%  Similarity=0.346  Sum_probs=41.9

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.24  E-value=4e-12  Score=59.58  Aligned_cols=38  Identities=42%  Similarity=0.733  Sum_probs=18.4

Q ss_pred             hhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        48 ~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      .|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            34444444454455444444445445444444444444

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.24  E-value=1.3e-13  Score=70.41  Aligned_cols=52  Identities=17%  Similarity=0.315  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHH
Q psy2643          44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDL   98 (134)
Q Consensus        44 ~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l   98 (134)
                      .|++.|.++++|.|+.|+..|.....|.   +.|.++++|.|+.|++.|....++
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            4666777888888888888887777665   678888888888888888766543

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=2.7e-12  Score=61.43  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=41.4

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66789999999999999999999999999999999999999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=2e-12  Score=61.89  Aligned_cols=45  Identities=27%  Similarity=0.356  Sum_probs=41.9

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=62.20  Aligned_cols=44  Identities=30%  Similarity=0.600  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.23  E-value=2.9e-12  Score=61.34  Aligned_cols=44  Identities=30%  Similarity=0.425  Sum_probs=41.3

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56788999999999999999999999999999999999999887

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4e-12  Score=60.80  Aligned_cols=42  Identities=48%  Similarity=0.626  Sum_probs=28.7

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            345566667777777777777777777777777777777665

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.1e-12  Score=61.78  Aligned_cols=44  Identities=41%  Similarity=0.589  Sum_probs=41.5

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            66789999999999999999999999999999999999999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=62.27  Aligned_cols=45  Identities=29%  Similarity=0.598  Sum_probs=41.9

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.7e-12  Score=61.44  Aligned_cols=44  Identities=32%  Similarity=0.519  Sum_probs=41.3

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56788999999999999999999999999999999999999887

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=4.7e-12  Score=60.56  Aligned_cols=41  Identities=46%  Similarity=0.771  Sum_probs=21.3

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            4 GSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             ccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            34444555555555555555555555555555555555543

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.22  E-value=4.1e-12  Score=60.79  Aligned_cols=41  Identities=54%  Similarity=0.762  Sum_probs=21.0

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444455555555555555555555555555555555543

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=64.35  Aligned_cols=57  Identities=42%  Similarity=0.777  Sum_probs=51.1

Q ss_pred             cCCCCCccCcc--cccccCChhhHHHHHHhhcCCCceeccc--cccccCChhHHHHHHHHc
Q psy2643          21 HSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        21 ~~~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~~~~~~~l~~h~~~~   77 (134)
                      ....++|.|..  |++.|.....|..|++.|.++++|.|.+  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34567899988  9999999999999999999999999975  999999999999998764

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.8e-12  Score=61.33  Aligned_cols=45  Identities=36%  Similarity=0.615  Sum_probs=41.5

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .|+++|+++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999865

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=6.4e-12  Score=60.07  Aligned_cols=41  Identities=34%  Similarity=0.499  Sum_probs=21.4

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      ++.|.++++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444455555555555555555555555555555555543

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.6e-12  Score=60.30  Aligned_cols=41  Identities=46%  Similarity=0.686  Sum_probs=22.2

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             ccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34445555555555555555555555555555555555553

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=7.3e-12  Score=58.64  Aligned_cols=37  Identities=35%  Similarity=0.606  Sum_probs=16.8

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      |.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444444444444444444444444444444443

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.8e-12  Score=61.10  Aligned_cols=44  Identities=34%  Similarity=0.545  Sum_probs=41.4

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHH-hhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTY-IHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++ .|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            6778999999999999999999999999999 9999999999887

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.4e-12  Score=60.32  Aligned_cols=40  Identities=48%  Similarity=0.684  Sum_probs=20.3

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             cCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            3344444555555555555555555555555555555554

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.5e-12  Score=60.30  Aligned_cols=39  Identities=49%  Similarity=0.767  Sum_probs=19.4

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            5 SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            344444455555555555555555555555555555544

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.7e-12  Score=60.23  Aligned_cols=39  Identities=46%  Similarity=0.694  Sum_probs=18.9

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep1_A            5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSS
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            334444444455555555444455555444444444444

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=6e-12  Score=60.14  Aligned_cols=41  Identities=51%  Similarity=0.751  Sum_probs=22.1

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34445555555555555555555555555555555555553

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.4e-12  Score=60.36  Aligned_cols=40  Identities=48%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A            4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             cccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444455555555555555555555555555555544

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=6.4e-12  Score=60.06  Aligned_cols=39  Identities=51%  Similarity=0.761  Sum_probs=18.5

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enf_A            5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCC
T ss_pred             cCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCC
Confidence            334444444444444444444444444444444444444

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.7e-12  Score=59.02  Aligned_cols=41  Identities=24%  Similarity=0.463  Sum_probs=36.8

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCcc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (134)
                      |+++|.++++|.|+.|++.|...+.|.+|++.|.+++++.+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            45678999999999999999999999999999998887764

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=8.2e-12  Score=59.68  Aligned_cols=40  Identities=45%  Similarity=0.615  Sum_probs=19.7

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emi_A            4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP   43 (46)
T ss_dssp             CCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSC
T ss_pred             CcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCC
Confidence            3344444445555555555555555555555555555544

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.1e-12  Score=60.42  Aligned_cols=37  Identities=57%  Similarity=0.834  Sum_probs=15.9

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      |.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             SSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            3344444444444444444444444444444444443

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=7.6e-12  Score=59.22  Aligned_cols=40  Identities=33%  Similarity=0.546  Sum_probs=21.1

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             SCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            3444455555555555555555555555555555555554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7.4e-12  Score=59.83  Aligned_cols=39  Identities=44%  Similarity=0.756  Sum_probs=19.1

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2emg_A            5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP   43 (46)
T ss_dssp             CCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCS
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            334444445555555555555555555555555555444

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.9e-12  Score=60.21  Aligned_cols=38  Identities=50%  Similarity=0.815  Sum_probs=17.2

Q ss_pred             hhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        48 ~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      .|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yth_A            6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSC
T ss_pred             CCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            33444444444444444444444444444444444444

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6.7e-12  Score=59.96  Aligned_cols=41  Identities=49%  Similarity=0.685  Sum_probs=21.6

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            34444555555555555555555555555555555555553

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.3e-12  Score=60.69  Aligned_cols=41  Identities=41%  Similarity=0.566  Sum_probs=23.5

Q ss_pred             hhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        48 ~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      .|.++++|.|..|++.|.....|..|++.|.++++|.|+.|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455555555566556555556566555555555655554

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6e-12  Score=60.14  Aligned_cols=40  Identities=50%  Similarity=0.661  Sum_probs=20.1

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C   43 (46)
T 2yts_A            4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP   43 (46)
T ss_dssp             SCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCC
T ss_pred             CCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCC
Confidence            3344444555555555555555555555555555555544

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.19  E-value=6.5e-12  Score=58.84  Aligned_cols=41  Identities=29%  Similarity=0.522  Sum_probs=36.9

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCcc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (134)
                      |++.|.++++|.|+.|++.|...+.|.+|++.|.+++++.+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            45678999999999999999999999999999999887754

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6.1e-12  Score=60.17  Aligned_cols=44  Identities=36%  Similarity=0.594  Sum_probs=41.0

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6.2e-12  Score=60.10  Aligned_cols=40  Identities=55%  Similarity=0.714  Sum_probs=19.8

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq1_A            4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSC
T ss_pred             ccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444455555555555555555555555555555544

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7.1e-12  Score=59.90  Aligned_cols=38  Identities=53%  Similarity=0.763  Sum_probs=17.6

Q ss_pred             hhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        48 ~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      .|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             CCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            34444444444444444444444444444444444444

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1e-11  Score=58.68  Aligned_cols=39  Identities=49%  Similarity=0.684  Sum_probs=19.0

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|+++|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             SCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             cCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            334444445555555555555555555544444444444

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8.6e-12  Score=59.63  Aligned_cols=40  Identities=58%  Similarity=0.708  Sum_probs=20.3

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP   43 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCT
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            3344444555555555555555555555555555555554

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.4e-12  Score=59.24  Aligned_cols=40  Identities=38%  Similarity=0.684  Sum_probs=20.0

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             ccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            3344444555555555555555555555555555555544

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.1e-12  Score=59.91  Aligned_cols=42  Identities=43%  Similarity=0.621  Sum_probs=22.3

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            334444555555555555555555555555555555555543

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.4e-12  Score=59.81  Aligned_cols=41  Identities=51%  Similarity=0.749  Sum_probs=21.8

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             ccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            34444555555555555555555555555555555555553

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1e-11  Score=59.38  Aligned_cols=39  Identities=46%  Similarity=0.629  Sum_probs=19.1

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            334444445555555555555555555555544555444

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.8e-12  Score=59.34  Aligned_cols=39  Identities=49%  Similarity=0.635  Sum_probs=18.1

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            5 SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             cCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            334444444444444444444444444444444444444

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.8e-12  Score=59.80  Aligned_cols=38  Identities=53%  Similarity=0.831  Sum_probs=18.0

Q ss_pred             hhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        48 ~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      .|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eon_A            6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP   43 (46)
T ss_dssp             SCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTT
T ss_pred             CCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCC
Confidence            34444444444444444444444444444444444444

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.18  E-value=2.4e-11  Score=60.12  Aligned_cols=47  Identities=40%  Similarity=0.716  Sum_probs=42.6

Q ss_pred             HcCCCCCccCcccccccCChhhHHHHHH-hhcCCCceeccccccccCC
Q psy2643          20 IHSDTRPYPCQYCGKRFHQKSDMKKHTY-IHTGEKPHKCVVCGKAFSQ   66 (134)
Q Consensus        20 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~~~~~~~~~C~~C~~~~~~   66 (134)
                      .+.++++|.|+.|++.|.....|..|++ .|.++++|.|.+|++.|..
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            3567889999999999999999999987 8999999999999999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1e-11  Score=58.84  Aligned_cols=40  Identities=30%  Similarity=0.400  Sum_probs=23.5

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      |++.|.++++|.|..|++.|...+.|..|++.|.+++++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            3445556666666666666666666666666665555543

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.3e-11  Score=58.41  Aligned_cols=39  Identities=23%  Similarity=0.337  Sum_probs=19.0

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            5 SSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             SCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            334444445555555555555555555544544444444

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.16  E-value=1.5e-11  Score=57.51  Aligned_cols=36  Identities=39%  Similarity=0.642  Sum_probs=15.7

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCcc
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS   84 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~   84 (134)
                      |.++++|.|..|++.|.....|..|++.|.++++|.
T Consensus         6 H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            333444444444444444444444444444444443

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.16  E-value=9.6e-12  Score=61.57  Aligned_cols=49  Identities=29%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             ccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCc
Q psy2643          35 RFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPF   83 (134)
Q Consensus        35 ~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (134)
                      .|.....|..|++.|.++++|.|..|+..|.....|..|+++|.++++|
T Consensus         5 ~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            5 RAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            3444445555666666666666666666666666666666666666554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=59.11  Aligned_cols=39  Identities=54%  Similarity=0.730  Sum_probs=19.3

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A            5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             CSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             cCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            344444445555555555555555555555555555544

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=59.11  Aligned_cols=42  Identities=21%  Similarity=0.418  Sum_probs=37.9

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCccc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  114 (134)
                      |++.|.++++|.|..|++.|...+.|.+|++.|.+++++.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            567789999999999999999999999999999988887654

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.1e-11  Score=59.23  Aligned_cols=43  Identities=40%  Similarity=0.587  Sum_probs=40.2

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999974

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.3e-11  Score=58.43  Aligned_cols=41  Identities=24%  Similarity=0.492  Sum_probs=37.2

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCcc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (134)
                      |++.|.++++|.|+.|++.|...+.|.+|++.|.+++++.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            56789999999999999999999999999999998887654

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.6e-11  Score=58.69  Aligned_cols=38  Identities=50%  Similarity=0.764  Sum_probs=18.0

Q ss_pred             hhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        48 ~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      .|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP   43 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            33444444444444444444444444444444444444

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.14  E-value=1.2e-11  Score=59.17  Aligned_cols=43  Identities=35%  Similarity=0.606  Sum_probs=40.1

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.3e-11  Score=58.93  Aligned_cols=43  Identities=33%  Similarity=0.576  Sum_probs=40.1

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999874

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.3e-12  Score=58.26  Aligned_cols=39  Identities=31%  Similarity=0.537  Sum_probs=25.0

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCC
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      |+++|.++++|.|+.|++.|...+.|.+|++.|.+++++
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS   40 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCC
Confidence            344566666666666666666666666666666665554

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=3.7e-11  Score=57.09  Aligned_cols=42  Identities=33%  Similarity=0.605  Sum_probs=39.6

Q ss_pred             HcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccc
Q psy2643          20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG   61 (134)
Q Consensus        20 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~   61 (134)
                      +|+++++|.|+.|++.|.....|..|++.|.++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            577899999999999999999999999999999999999986

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=58.88  Aligned_cols=42  Identities=29%  Similarity=0.485  Sum_probs=38.2

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCccc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  114 (134)
                      |++.|.++++|.|+.|++.|...+.|.+|++.|.+++++.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            667899999999999999999999999999999998887653

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=58.79  Aligned_cols=43  Identities=40%  Similarity=0.647  Sum_probs=40.1

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.6e-11  Score=58.65  Aligned_cols=43  Identities=37%  Similarity=0.671  Sum_probs=40.1

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|+++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-11  Score=57.86  Aligned_cols=35  Identities=26%  Similarity=0.626  Sum_probs=16.8

Q ss_pred             HcCCCCCcccCcchhhccChHHHHHHHHhhCCCCC
Q psy2643          76 KHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSP  110 (134)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (134)
                      .|.++++|.|+.|++.|...+.|.+|++.+.++++
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP   39 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            34444445555555555555555555444444433

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=7.3e-12  Score=58.64  Aligned_cols=40  Identities=53%  Similarity=0.807  Sum_probs=22.1

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3444555555555555555555555555555555555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.4e-11  Score=58.82  Aligned_cols=42  Identities=33%  Similarity=0.524  Sum_probs=38.1

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCccc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  114 (134)
                      |+++|.++++|.|+.|++.|...+.|.+|++.|.+++++.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            667899999999999999999999999999999998887653

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=8.6e-12  Score=59.59  Aligned_cols=40  Identities=43%  Similarity=0.652  Sum_probs=20.9

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            4 GSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             ccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            3444455555555555555555555555555555555554

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.9e-11  Score=58.40  Aligned_cols=41  Identities=37%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCC-CCCcccC
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG-YKPFSCG   86 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~-~~~~~C~   86 (134)
                      ++.|.++++|.|..|++.|.....|..|++.|.+ +++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3444455555555555555555555555555555 5555553

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.8e-11  Score=58.42  Aligned_cols=43  Identities=37%  Similarity=0.639  Sum_probs=40.1

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999874

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=58.68  Aligned_cols=43  Identities=35%  Similarity=0.621  Sum_probs=40.1

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999874

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.9e-12  Score=68.51  Aligned_cols=65  Identities=22%  Similarity=0.278  Sum_probs=48.9

Q ss_pred             hHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          41 DMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        41 ~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      .|..|+..+.+.+++.|..|+..|. ...|..|+ .+.+++++.|+.|++.|. +..|..|++.+.+.
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            3556766777788888888888874 77788887 777888888888888766 57788888766554

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=58.73  Aligned_cols=44  Identities=36%  Similarity=0.666  Sum_probs=40.6

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=58.67  Aligned_cols=44  Identities=32%  Similarity=0.600  Sum_probs=40.5

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            36778999999999999999999999999999999999999864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.3e-11  Score=57.56  Aligned_cols=37  Identities=35%  Similarity=0.516  Sum_probs=16.1

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      |.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            3334444444444444444444444444444444443

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=58.72  Aligned_cols=43  Identities=40%  Similarity=0.657  Sum_probs=40.0

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.9e-11  Score=57.79  Aligned_cols=41  Identities=32%  Similarity=0.528  Sum_probs=37.2

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCcc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (134)
                      |++.|.++++|.|+.|++.|...+.|.+|++.|.+++++.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            56789999999999999999999999999999998887654

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-11  Score=59.08  Aligned_cols=39  Identities=41%  Similarity=0.666  Sum_probs=18.5

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      +.|.++++|.|..|++.|.....|..|+++|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emz_A            5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP   43 (46)
T ss_dssp             SCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred             cCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            334444444444444444444444444444444444444

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-11  Score=57.94  Aligned_cols=33  Identities=27%  Similarity=0.526  Sum_probs=14.5

Q ss_pred             cCCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      |.++++|.|+.|++.|...+.|.+|++.|.+++
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   38 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG   38 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHHHHSCC
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCC
Confidence            444444444444444444444444444444333

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=58.47  Aligned_cols=43  Identities=30%  Similarity=0.476  Sum_probs=39.9

Q ss_pred             HHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          18 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        18 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      +++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3568899999999999999999999999999999999999887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.12  E-value=1.8e-11  Score=57.28  Aligned_cols=40  Identities=28%  Similarity=0.578  Sum_probs=36.1

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      |++.|.++++|.|+.|++.|...+.|.+|++.+.+++++.
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            4567899999999999999999999999999999888764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.1e-11  Score=58.26  Aligned_cols=43  Identities=33%  Similarity=0.496  Sum_probs=40.0

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5678899999999999999999999999999999999999864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.3e-11  Score=57.76  Aligned_cols=41  Identities=41%  Similarity=0.670  Sum_probs=38.2

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            55678899999999999999999999999999999999987

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.4e-11  Score=58.83  Aligned_cols=43  Identities=40%  Similarity=0.589  Sum_probs=40.1

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|+++++|.|+.|++.|.....|..|++.|.++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.3e-11  Score=58.32  Aligned_cols=41  Identities=29%  Similarity=0.492  Sum_probs=37.1

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCcc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (134)
                      |+++|.++++|.|+.|++.|...+.|.+|++.|.+++++.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            66789999999999999999999999999999988877654

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=58.42  Aligned_cols=44  Identities=39%  Similarity=0.582  Sum_probs=40.4

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2e-11  Score=58.33  Aligned_cols=43  Identities=35%  Similarity=0.586  Sum_probs=40.0

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.7e-11  Score=58.59  Aligned_cols=43  Identities=33%  Similarity=0.642  Sum_probs=39.9

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.2e-11  Score=58.18  Aligned_cols=44  Identities=39%  Similarity=0.699  Sum_probs=40.3

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36778999999999999999999999999999999999999864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.6e-11  Score=58.56  Aligned_cols=43  Identities=33%  Similarity=0.544  Sum_probs=40.0

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6678899999999999999999999999999999999999864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.6e-11  Score=58.65  Aligned_cols=43  Identities=35%  Similarity=0.556  Sum_probs=40.0

Q ss_pred             HHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          18 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        18 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      +++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4578899999999999999999999999999999999999887

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.8e-11  Score=58.46  Aligned_cols=43  Identities=42%  Similarity=0.685  Sum_probs=40.1

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            6778999999999999999999999999999999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.9e-11  Score=58.35  Aligned_cols=43  Identities=37%  Similarity=0.672  Sum_probs=40.0

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.4e-11  Score=58.30  Aligned_cols=38  Identities=32%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             HHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCC
Q psy2643          74 LRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      ++.|.++++|.|+.|++.|...+.|.+|++.|.+++++
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eox_A            4 GSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGP   41 (44)
T ss_dssp             CCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCC
T ss_pred             CcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCC
Confidence            33445555555555555555555555555555544443

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.1e-11  Score=58.03  Aligned_cols=41  Identities=41%  Similarity=0.616  Sum_probs=38.2

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            56678899999999999999999999999999999999987

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.8e-11  Score=57.76  Aligned_cols=42  Identities=43%  Similarity=0.632  Sum_probs=28.8

Q ss_pred             HhhcCCCceecc--ccccccCChhHHHHHHHHcCCCCCcccCcc
Q psy2643          47 YIHTGEKPHKCV--VCGKAFSQSSNLITHLRKHTGYKPFSCGLC   88 (134)
Q Consensus        47 ~~~~~~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (134)
                      +.|.++++|.|.  .|++.|.....|..|++.|.++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345566677776  677777777777777777777777777655

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.2e-11  Score=58.12  Aligned_cols=42  Identities=29%  Similarity=0.526  Sum_probs=38.0

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCccc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  114 (134)
                      |++.|.++++|.|+.|++.|...+.|.+|++.|.+++++.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            567899999999999999999999999999999998887653

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.9e-11  Score=58.31  Aligned_cols=43  Identities=40%  Similarity=0.685  Sum_probs=40.0

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.3e-11  Score=57.44  Aligned_cols=43  Identities=35%  Similarity=0.522  Sum_probs=39.6

Q ss_pred             HHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecc
Q psy2643          16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCV   58 (134)
Q Consensus        16 ~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   58 (134)
                      .|+++|.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            3677899999999999999999999999999999999999884

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.5e-11  Score=58.17  Aligned_cols=41  Identities=32%  Similarity=0.382  Sum_probs=28.0

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      |++.|.++++|.|..|++.|.....|..|+++|.++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            44556666677777777777777777777777777777665

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.3e-11  Score=57.24  Aligned_cols=38  Identities=47%  Similarity=0.810  Sum_probs=21.2

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      |.++++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            44455555555555555555555555555555555553

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.1e-11  Score=57.04  Aligned_cols=41  Identities=17%  Similarity=0.341  Sum_probs=37.2

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCcc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQ  113 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (134)
                      |++.|.++++|.|+.|++.|...+.|..|++.|.+++++.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            56789999999999999999999999999999998887654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.9e-11  Score=56.39  Aligned_cols=41  Identities=44%  Similarity=0.595  Sum_probs=29.5

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      |++.|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            45566677777777777777777777777777777777765

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.09  E-value=7.1e-11  Score=56.90  Aligned_cols=42  Identities=26%  Similarity=0.540  Sum_probs=38.9

Q ss_pred             cCCCCCccCcccccccCChhhHHHHHHhhcCCCceecccccc
Q psy2643          21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGK   62 (134)
Q Consensus        21 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   62 (134)
                      +.++++|.|.+|++.|.....|..|++.|.++++|.|.+|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            567889999999999999999999999999999999999974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=8.6e-11  Score=55.26  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=17.1

Q ss_pred             cCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        50 ~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      .++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            6 SGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            344444444444444444444444444444444444

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.6e-11  Score=57.88  Aligned_cols=43  Identities=30%  Similarity=0.509  Sum_probs=40.0

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999863

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=7.4e-11  Score=56.28  Aligned_cols=37  Identities=51%  Similarity=0.808  Sum_probs=17.8

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      |.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            3444444444444444444444444444444444444

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.07  E-value=1.4e-12  Score=66.59  Aligned_cols=52  Identities=12%  Similarity=0.344  Sum_probs=45.2

Q ss_pred             HHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhH
Q psy2643          15 STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSN   69 (134)
Q Consensus        15 ~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~   69 (134)
                      ..|+++|.++++|.|+.|++.|.....|.   +.|.++++|.|..|+..|....+
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            45778899999999999999999887775   67899999999999999977654

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.8e-11  Score=58.48  Aligned_cols=42  Identities=29%  Similarity=0.472  Sum_probs=37.9

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCCCccc
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQH  114 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  114 (134)
                      |+++|.++++|.|..|++.|.....|.+|++.|.+++++.+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            567889999999999999999999999999999988887653

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4e-11  Score=57.22  Aligned_cols=43  Identities=28%  Similarity=0.602  Sum_probs=39.4

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|..
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678899999999999999999999999999999999999863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=2.9e-11  Score=57.73  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcC-CCceeccc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTG-EKPHKCVV   59 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~-~~~~~C~~   59 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.+ +++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788999999999999999999999999999999 99999863

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=6.3e-11  Score=55.97  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=38.7

Q ss_pred             HHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceecc
Q psy2643          17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCV   58 (134)
Q Consensus        17 h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   58 (134)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            567788999999999999999999999999999999999884

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=54.14  Aligned_cols=34  Identities=26%  Similarity=0.596  Sum_probs=15.7

Q ss_pred             cCCCCCcccCcchhhccChHHHHHHHHhhCCCCC
Q psy2643          77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSP  110 (134)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (134)
                      |.++++|.|+.|++.|.....|..|++.|.++++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP   38 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence            3444444444444444444444444444444433

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=7.6e-11  Score=53.49  Aligned_cols=36  Identities=22%  Similarity=0.589  Sum_probs=29.6

Q ss_pred             HHcCCCCCcccCcchhhccChHHHHHHHHhhCCCCC
Q psy2643          75 RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSP  110 (134)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (134)
                      +.|.++++|.|..|++.|...+.|..|++.|+++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            357788889999999999999999999888877653

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.04  E-value=6.5e-11  Score=53.73  Aligned_cols=35  Identities=40%  Similarity=0.707  Sum_probs=29.1

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCC
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      |++.|.++++|.|+.|++.|...+.|.+|++.+.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            45678888889999999999998999999887765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.02  E-value=2e-10  Score=51.31  Aligned_cols=33  Identities=30%  Similarity=0.610  Sum_probs=27.3

Q ss_pred             cCCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      |.++++|.|..|++.|...+.|.+|++.|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            567888888888888888888888888887664

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.7e-10  Score=53.55  Aligned_cols=38  Identities=39%  Similarity=0.627  Sum_probs=35.8

Q ss_pred             hhcCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        48 ~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      .|.++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            46788999999999999999999999999999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=9e-12  Score=65.91  Aligned_cols=66  Identities=23%  Similarity=0.273  Sum_probs=58.3

Q ss_pred             HHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          13 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        13 ~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      .|..|++++.+++++.|+.|+..|. ...|..|+ .+.+++++.|..|+..|.. ..|..|++++.+++
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTTBS
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccCCc
Confidence            4667888899999999999999995 77899999 8999999999999998875 78999999887764

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.8e-10  Score=54.93  Aligned_cols=42  Identities=38%  Similarity=0.485  Sum_probs=38.5

Q ss_pred             HHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          18 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        18 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      +++|.++++|.|+.|++.|.....|..|++.|.++++|.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            357889999999999999999999999999999999999864

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.4e-10  Score=53.13  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=37.4

Q ss_pred             HHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          19 LIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        19 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      ++|.++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            35788999999999999999999999999999999999864

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.99  E-value=3.5e-10  Score=50.56  Aligned_cols=33  Identities=30%  Similarity=0.620  Sum_probs=26.7

Q ss_pred             cCCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      |.++++|.|..|++.|...+.|.+|++.|.++.
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            567888888888888888888888888877654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.96  E-value=5e-10  Score=51.36  Aligned_cols=35  Identities=14%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             CCCCCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          78 TGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      .++++|.|..|++.|...+.|..|++.|.+++++.
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            45566666666666666666666666666655543

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.6e-10  Score=55.48  Aligned_cols=43  Identities=26%  Similarity=0.530  Sum_probs=39.5

Q ss_pred             HHHcCCCCCccCc--ccccccCChhhHHHHHHhhcCCCceecccc
Q psy2643          18 LLIHSDTRPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVVC   60 (134)
Q Consensus        18 ~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   60 (134)
                      .++|.++++|.|.  .|++.|.....|..|++.|.++++|.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4578899999998  899999999999999999999999999887

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.4e-10  Score=55.05  Aligned_cols=41  Identities=34%  Similarity=0.653  Sum_probs=37.8

Q ss_pred             HHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccc
Q psy2643          19 LIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV   59 (134)
Q Consensus        19 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   59 (134)
                      ++|.++++|.|+.|++.|.....|..|++.|.++++|.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            56888999999999999999999999999999999999863

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=8.1e-10  Score=50.48  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=27.1

Q ss_pred             cCCCCCcccCc--chhhccChHHHHHHHHhhCCC
Q psy2643          77 HTGYKPFSCGL--CDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        77 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +.+++||.|+.  |++.|...+.|.+|++.|.++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56788999976  999999999999999888764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.88  E-value=2.1e-09  Score=55.11  Aligned_cols=40  Identities=25%  Similarity=0.467  Sum_probs=29.7

Q ss_pred             cCCCCCcccCc--chhhccChHHHHHHH-HhhCCCCCCccccc
Q psy2643          77 HTGYKPFSCGL--CDKAFQRKVDLRRHR-ESQHPGSPAQQHHI  116 (134)
Q Consensus        77 ~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~h~~~~~~~~~~  116 (134)
                      ..+++||.|..  |+++|+..+.|.+|+ +.|.+++|+.+.+.
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~   64 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEV   64 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccc
Confidence            46778888854  888888888888886 56777777765553

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.88  E-value=2.1e-09  Score=49.23  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             cCCCceeccccccccCChhHHHHHHHHcCCCCCccc
Q psy2643          50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC   85 (134)
Q Consensus        50 ~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (134)
                      .++++|.|..|++.|.....|..|++.|.++++|.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            456677777777777777777777777777777654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.86  E-value=1.2e-09  Score=52.59  Aligned_cols=36  Identities=22%  Similarity=0.523  Sum_probs=27.7

Q ss_pred             HcCCCCCcccCcchhhccChHHHHHHHH-hhCCCCCC
Q psy2643          76 KHTGYKPFSCGLCDKAFQRKVDLRRHRE-SQHPGSPA  111 (134)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~~~  111 (134)
                      +|.++++|.|..|++.|.....|.+|++ .|.++...
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            3778899999999999999999999998 77666544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2e-09  Score=48.28  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=26.7

Q ss_pred             HcCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          76 KHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      .|.++++|.|+.|++.|.....|..|++.|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            367788888888888888888888888877654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=7.3e-10  Score=50.23  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             HHcCCCCCcccCcchhhccChHHHHHH-HHhhCC
Q psy2643          75 RKHTGYKPFSCGLCDKAFQRKVDLRRH-RESQHP  107 (134)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h~  107 (134)
                      +.|.++++|.|..|++.|...+.|..| ++.|.+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            357788899999999999999999999 676644

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=2.7e-09  Score=47.89  Aligned_cols=33  Identities=30%  Similarity=0.605  Sum_probs=25.9

Q ss_pred             HcCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          76 KHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      .|.++++|.|+.|++.|...+.|.+|++.|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            367778888888888888888888888877654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=3.7e-09  Score=47.35  Aligned_cols=33  Identities=24%  Similarity=0.469  Sum_probs=26.2

Q ss_pred             HcCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          76 KHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      .|.++++|.|..|++.|.....|.+|++.|.++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            356778888888888888888888888877654

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.82  E-value=3.8e-09  Score=46.55  Aligned_cols=30  Identities=27%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             CcccCcchhhccChHHHHHHHHhhCCCCCC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      +|.|+.|++.|...+.|..|++.|.+++++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            566666666666666666666666665544

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.5e-09  Score=49.04  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=26.3

Q ss_pred             HcCCCCCcccCcchhhccCh-HHHHHHHHhhCCC
Q psy2643          76 KHTGYKPFSCGLCDKAFQRK-VDLRRHRESQHPG  108 (134)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~~h~~  108 (134)
                      +|.++++|.|+.|++.|... +.|.+|++.|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            46778888888888888888 8888888877554

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.9e-09  Score=47.79  Aligned_cols=33  Identities=18%  Similarity=0.449  Sum_probs=26.1

Q ss_pred             HcCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          76 KHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      .|.++++|.|..|++.|...+.|.+|++.|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            366778888888888888888888888877543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=4e-09  Score=47.30  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=25.9

Q ss_pred             cCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +.++++|.|+.|++.|.....|..|++.|.++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            56778888888888888888888888887654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=1e-10  Score=63.66  Aligned_cols=57  Identities=14%  Similarity=0.188  Sum_probs=41.7

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhhCC
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      ..|.++++|.|..|++.|.....|..|+++|.++++|.|..|.    ....|..|++.+.+
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            4467778888888888888888888888888888888886655    33445566555544

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=3.7e-09  Score=48.00  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=24.7

Q ss_pred             cCCCCCcccC--cchhhccChHHHHHHHHhhCCCCCC
Q psy2643          77 HTGYKPFSCG--LCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        77 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      |.++++|.|.  .|++.|...+.|.+|++.|.+++++
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4566777777  4777777777777777777666543

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=3.6e-09  Score=47.70  Aligned_cols=33  Identities=21%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      |.++++|.|..|++.|.....|..|++.|.+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            455566666666666666666666666665554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=2e-08  Score=51.47  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=29.8

Q ss_pred             cCCCCCcccCcchhhccChHHHHHHHHhhCCCCCC
Q psy2643          77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      +..+++|.|..|++.|...+.|.+|++.|.++...
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~   42 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ   42 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccc
Confidence            56788999999999999999999999998887543

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.73  E-value=1e-08  Score=45.11  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=22.1

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcc
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFS   84 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~   84 (134)
                      +|.|..|++.|.....|..|+++|.++++|.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5677777777777777777777777777664

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=1.4e-08  Score=52.15  Aligned_cols=39  Identities=31%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             hcCCCceeccc--cccccCChhHHHHHH-HHcCCCCCcccCc
Q psy2643          49 HTGEKPHKCVV--CGKAFSQSSNLITHL-RKHTGYKPFSCGL   87 (134)
Q Consensus        49 ~~~~~~~~C~~--C~~~~~~~~~l~~h~-~~~~~~~~~~C~~   87 (134)
                      ..+++||.|..  |++.|....+|..|+ ++|++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            46778888864  888888888888886 5788888887753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.73  E-value=6e-09  Score=46.94  Aligned_cols=34  Identities=38%  Similarity=0.623  Sum_probs=18.8

Q ss_pred             HHhhcCCCceeccccccccCChhHHHHHHHHcCC
Q psy2643          46 TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        46 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      ++.+.++++|.|..|++.|.....|..|++.|.+
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            3445555555555555555555555555555543

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.73  E-value=1.2e-08  Score=45.20  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=22.1

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      |.++++|.|..|++.|.....|..|++.|.+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            345666777777777777777777777666654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.72  E-value=1.2e-08  Score=45.32  Aligned_cols=33  Identities=33%  Similarity=0.671  Sum_probs=22.6

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      |.++++|.|..|++.|.....|..|++.|.+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            445667777777777777777777777766654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.69  E-value=1.3e-08  Score=43.38  Aligned_cols=29  Identities=28%  Similarity=0.705  Sum_probs=21.8

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +++|.|..|++.|.....|..|++.|.++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            35778888888888888888888776654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.68  E-value=9.5e-09  Score=46.24  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=21.7

Q ss_pred             cCCCCCcccCcchhhccChHHHHHHH
Q psy2643          77 HTGYKPFSCGLCDKAFQRKVDLRRHR  102 (134)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~  102 (134)
                      ..+++||.|+.|+++|+..+.|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            45788888888888888888888887

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.68  E-value=1.5e-08  Score=43.10  Aligned_cols=29  Identities=21%  Similarity=0.543  Sum_probs=23.6

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      ++|.|+.|++.|...+.|..|++.+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            46888888888888888888888887664

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.66  E-value=9.7e-09  Score=42.96  Aligned_cols=26  Identities=19%  Similarity=0.544  Sum_probs=21.3

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhh
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      +++|.|+.|++.|...+.|.+|++.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            46788888888888888888888765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.65  E-value=1.5e-08  Score=42.30  Aligned_cols=26  Identities=31%  Similarity=0.653  Sum_probs=20.7

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhh
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      +++|.|..|++.|...+.|..|++.|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            46788888888888888888888765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.65  E-value=1.4e-08  Score=42.71  Aligned_cols=27  Identities=30%  Similarity=0.739  Sum_probs=21.6

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhhC
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      +++|.|+.|++.|...+.|..|++.|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            467888888888888888888887664

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=2.9e-10  Score=61.86  Aligned_cols=58  Identities=16%  Similarity=0.346  Sum_probs=47.4

Q ss_pred             HHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCC
Q psy2643          18 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        18 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      .++|.++++|.|+.|++.|.....|..|++.|.++++|.|..|..    ...+..|.+.|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            456889999999999999999999999999999999999987654    3344455666654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.64  E-value=1.7e-08  Score=45.53  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=25.0

Q ss_pred             cCCCCCcccC--cchhhccChHHHHHHHHhhCCC
Q psy2643          77 HTGYKPFSCG--LCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        77 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      |.++++|.|.  .|++.|...+.|.+|++.|.++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5677888887  4888888888888888877654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.62  E-value=2.9e-08  Score=41.94  Aligned_cols=28  Identities=36%  Similarity=0.799  Sum_probs=21.0

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ++|.|+.|++.|...+.|..|++.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            3677888888888888888887777654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.62  E-value=1.8e-08  Score=42.62  Aligned_cols=28  Identities=29%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ++|.|+.|++.|...+.|..|++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4677777888777777777777776543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.62  E-value=1.8e-09  Score=51.66  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=25.8

Q ss_pred             HHHcCCCCCcccC--cchhhccChHHHHHHHHhhCCC
Q psy2643          74 LRKHTGYKPFSCG--LCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        74 ~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ...|.++++|.|.  .|++.|...+.|.+|++.|.++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            3457777888884  6888888888888888777654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=4.5e-08  Score=43.70  Aligned_cols=32  Identities=34%  Similarity=0.613  Sum_probs=21.6

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +.++++|.|..|++.|.....|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            45566677777777777777777777666654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.58  E-value=4.9e-08  Score=42.31  Aligned_cols=29  Identities=48%  Similarity=0.881  Sum_probs=22.3

Q ss_pred             CCCcccC--cchhhccChHHHHHHHHhhCCC
Q psy2643          80 YKPFSCG--LCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        80 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +++|.|.  .|++.|...+.|..|++.|.++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            3678887  7888888888888888877654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=5.2e-08  Score=43.42  Aligned_cols=32  Identities=47%  Similarity=0.675  Sum_probs=20.1

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |.++++|.|..|++.|.....|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            44556666666666666666666666666554

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.57  E-value=4.4e-08  Score=44.26  Aligned_cols=34  Identities=32%  Similarity=0.656  Sum_probs=22.7

Q ss_pred             cCCCceecc--ccccccCChhHHHHHHHHcCCCCCc
Q psy2643          50 TGEKPHKCV--VCGKAFSQSSNLITHLRKHTGYKPF   83 (134)
Q Consensus        50 ~~~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~~~   83 (134)
                      .++++|.|.  .|++.|.....|..|++.|.++++|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            355667777  3777777777777777777666655

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.57  E-value=2.9e-09  Score=46.56  Aligned_cols=31  Identities=26%  Similarity=0.439  Sum_probs=24.0

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      ++|.|..|++.|...+.|.+|++.|.++++.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4688888888888888888888877766543

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.56  E-value=2.9e-08  Score=41.89  Aligned_cols=28  Identities=29%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ++|.|+.|++.|.....|..|++.|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            3577777777777777777777766543

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.56  E-value=2.5e-08  Score=42.05  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=20.6

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ++|.|+.|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4677777888887777787887776554

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=4.3e-08  Score=43.76  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +.++++|.|..|++.|.....|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            44566667777777777777777776666554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=6.1e-08  Score=43.17  Aligned_cols=32  Identities=34%  Similarity=0.579  Sum_probs=19.8

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +.++++|.|..|++.|.....|..|+++|.++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            34555666666666666666666666666554

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=6.9e-08  Score=43.94  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             hcCCCceeccc--cccccCChhHHHHHHHHcCCC
Q psy2643          49 HTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        49 ~~~~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +.+++||.|..  |++.|.....|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            34566666654  666666666666666666554

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.95  E-value=8.9e-09  Score=43.96  Aligned_cols=29  Identities=28%  Similarity=0.556  Sum_probs=22.8

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +++|.|..|++.|...+.|..|++.|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            35788888888888888888888877653

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.54  E-value=5.3e-08  Score=41.90  Aligned_cols=28  Identities=36%  Similarity=0.850  Sum_probs=21.2

Q ss_pred             CCcccC--cchhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCG--LCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ++|.|+  .|++.|...+.|..|++.|.++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            467786  7888888888888888777654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.54  E-value=4.5e-08  Score=40.63  Aligned_cols=26  Identities=35%  Similarity=0.903  Sum_probs=20.3

Q ss_pred             CcccCcchhhccChHHHHHHHHhhCC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      +|.|..|++.|...+.|.+|++.|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            47888888888888888888877654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=4.5e-08  Score=43.97  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             hcCCCceeccccccccCCh-hHHHHHHHHcCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQS-SNLITHLRKHTGY   80 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~-~~l~~h~~~~~~~   80 (134)
                      |.++++|.|..|++.|... ..|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            4455566666666666665 6666666655544

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=1e-07  Score=42.46  Aligned_cols=32  Identities=34%  Similarity=0.530  Sum_probs=20.9

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +.++++|.|..|++.|.....|..|+++|.++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            34556667777777777766777776666654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.93  E-value=1.1e-08  Score=43.42  Aligned_cols=28  Identities=32%  Similarity=0.597  Sum_probs=21.7

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ++|.|..|++.|...+.|..|++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            3678888888888888888888777553

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=6.8e-08  Score=43.46  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=19.0

Q ss_pred             hcCCCceeccccccccCChhHHHHH-HHHcCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITH-LRKHTG   79 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h-~~~~~~   79 (134)
                      |.++++|.|..|++.|.....|..| ++.|.+
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            4555666666666666666666666 555544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.85  E-value=1.9e-08  Score=41.54  Aligned_cols=25  Identities=32%  Similarity=0.711  Sum_probs=20.7

Q ss_pred             CCcccCcchhhccChHHHHHHHHhh
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      ++|.|+.|++.|...+.|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4688888888888888888888765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.42  E-value=1.6e-07  Score=44.87  Aligned_cols=33  Identities=27%  Similarity=0.593  Sum_probs=20.1

Q ss_pred             hcCCCceeccccccccCChhHHHHHHH-HcCCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLR-KHTGYK   81 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~   81 (134)
                      |.++++|.|.+|++.|.....|..|++ .|.++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            445666666666666666666666666 665543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.42  E-value=1.1e-07  Score=40.35  Aligned_cols=27  Identities=41%  Similarity=0.872  Sum_probs=19.8

Q ss_pred             CCcccCcchhhccChHHHHHH-HHhhCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRH-RESQHP  107 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H-~~~~h~  107 (134)
                      ++|.|..|++.|...+.|..| ++.|.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccC
Confidence            367888888888888888888 455544

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.42  E-value=1.2e-07  Score=42.51  Aligned_cols=24  Identities=38%  Similarity=0.616  Sum_probs=12.3

Q ss_pred             CCCceeccccccccCChhHHHHHH
Q psy2643          51 GEKPHKCVVCGKAFSQSSNLITHL   74 (134)
Q Consensus        51 ~~~~~~C~~C~~~~~~~~~l~~h~   74 (134)
                      ++++|.|..|++.|....+|..|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            344555555555555555555554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=2.7e-07  Score=38.98  Aligned_cols=28  Identities=36%  Similarity=0.776  Sum_probs=19.5

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      ++|.|..|++.|.....|..|++.|.++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4667777777777777777777766654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.37  E-value=3.1e-07  Score=38.59  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=18.7

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +|.|..|++.|.....|..|++.|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            566777777777777777777766654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.37  E-value=3.9e-07  Score=38.20  Aligned_cols=27  Identities=37%  Similarity=0.704  Sum_probs=17.3

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +|.|..|++.|.....|..|++.|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            466666666666666666666666554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.34  E-value=3.8e-07  Score=40.90  Aligned_cols=31  Identities=45%  Similarity=0.834  Sum_probs=18.5

Q ss_pred             cCCCceeccc--cccccCChhHHHHHHHHcCCC
Q psy2643          50 TGEKPHKCVV--CGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        50 ~~~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      .++++|.|.+  |++.|.....|..|+++|.++
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            4455666653  666666666666666665554

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.33  E-value=3.8e-07  Score=38.21  Aligned_cols=27  Identities=56%  Similarity=0.965  Sum_probs=17.8

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +|.|..|+..|.....|..|++.|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            566666666666666666666666554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.31  E-value=1.4e-08  Score=44.27  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=17.4

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCc
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPF   83 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (134)
                      +|.|..|++.|.....|..|+++|.++++|
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            455666666665555565665555555544

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.31  E-value=9.4e-08  Score=45.45  Aligned_cols=37  Identities=22%  Similarity=0.464  Sum_probs=26.6

Q ss_pred             HHHhhcCCCceecc--ccccccCChhHHHHHHHHcCCCC
Q psy2643          45 HTYIHTGEKPHKCV--VCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        45 h~~~~~~~~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      |...|.++++|.|.  .|++.|.....|..|++.|.+++
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            34456777778885  58888888888888877777653

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.30  E-value=3.9e-07  Score=38.21  Aligned_cols=26  Identities=23%  Similarity=0.641  Sum_probs=20.2

Q ss_pred             CCcccC--cchhhccChHHHHHHHHhhC
Q psy2643          81 KPFSCG--LCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        81 ~~~~C~--~C~~~f~~~~~l~~H~~~~h  106 (134)
                      ++|.|.  .|++.|...+.|..|++.|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            367788  88888888888888887764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.29  E-value=8e-07  Score=38.25  Aligned_cols=28  Identities=36%  Similarity=0.699  Sum_probs=18.7

Q ss_pred             Cceecc--ccccccCChhHHHHHHHHcCCC
Q psy2643          53 KPHKCV--VCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        53 ~~~~C~--~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      ++|.|.  .|+..|.....|..|+++|.++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            456666  6777777777777777666654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.29  E-value=4.4e-07  Score=37.95  Aligned_cols=27  Identities=44%  Similarity=0.751  Sum_probs=16.0

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +|.|..|++.|.....|..|++.|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            455666666666666666666655544

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.28  E-value=7.1e-07  Score=37.61  Aligned_cols=28  Identities=29%  Similarity=0.457  Sum_probs=17.5

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      +|.|..|+..|.....|..|++.|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            4566666666666666666666665543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.26  E-value=8.5e-07  Score=37.90  Aligned_cols=27  Identities=48%  Similarity=0.910  Sum_probs=17.4

Q ss_pred             ceecc--ccccccCChhHHHHHHHHcCCC
Q psy2643          54 PHKCV--VCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        54 ~~~C~--~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +|.|.  .|++.|.....|..|+++|.++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            46665  6666666666666666666654

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.26  E-value=9.4e-07  Score=36.45  Aligned_cols=25  Identities=36%  Similarity=0.720  Sum_probs=16.9

Q ss_pred             CceeccccccccCChhHHHHHHHHc
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      ++|.|..|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4566777777777777777776655

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.23  E-value=9.5e-07  Score=36.72  Aligned_cols=26  Identities=50%  Similarity=0.911  Sum_probs=16.4

Q ss_pred             CceeccccccccCChhHHHHHHHHcC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~   78 (134)
                      ++|.|..|++.|.....|..|++.|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            45666666666666666666666554

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.21  E-value=8.8e-07  Score=36.64  Aligned_cols=25  Identities=24%  Similarity=0.659  Sum_probs=16.3

Q ss_pred             CceeccccccccCChhHHHHHHHHc
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      ++|.|..|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4566666666666666666666554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.20  E-value=1.2e-06  Score=44.78  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=18.5

Q ss_pred             cCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        50 ~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      .++++|.|..|++.|.....|..|+++|+++
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            3455566666666666666666666666554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.50  E-value=1.9e-07  Score=39.36  Aligned_cols=27  Identities=63%  Similarity=1.213  Sum_probs=16.8

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +|.|..|++.|.....|..|++.|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            456666666666666666666665544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.16  E-value=1.2e-06  Score=36.02  Aligned_cols=25  Identities=36%  Similarity=0.682  Sum_probs=14.7

Q ss_pred             eeccccccccCChhHHHHHHHHcCC
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      |.|..|++.|.....|..|++.|.+
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            5566666666666666666655543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.45  E-value=2.5e-07  Score=39.15  Aligned_cols=28  Identities=39%  Similarity=0.794  Sum_probs=16.6

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      ++|.|..|++.|.....|..|++.|.++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            3556666666666666666666655543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.15  E-value=5.9e-06  Score=41.91  Aligned_cols=47  Identities=28%  Similarity=0.475  Sum_probs=36.2

Q ss_pred             cccccCChhHHHHHHH-HcCCCC------CcccC--cchhhccChHHHHHHHHhhC
Q psy2643          60 CGKAFSQSSNLITHLR-KHTGYK------PFSCG--LCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        60 C~~~~~~~~~l~~h~~-~~~~~~------~~~C~--~C~~~f~~~~~l~~H~~~~h  106 (134)
                      |+..|.+...|..|+. .|.+.+      .|.|.  .|++.+.....|.+|++..|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            7778888888888874 565544      68886  68888888888999988765

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.13  E-value=1.5e-06  Score=36.65  Aligned_cols=27  Identities=33%  Similarity=0.710  Sum_probs=16.8

Q ss_pred             ceeccccccccCChhHHHHH-HHHcCCC
Q psy2643          54 PHKCVVCGKAFSQSSNLITH-LRKHTGY   80 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h-~~~~~~~   80 (134)
                      +|.|..|+..|.....|..| ++.|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            46666666666666666666 4555554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.21  E-value=1e-06  Score=36.02  Aligned_cols=24  Identities=54%  Similarity=0.966  Sum_probs=13.6

Q ss_pred             ceeccccccccCChhHHHHHHHHc
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      +|.|..|++.|.....|..|++.|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            455556666665555555555544

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.88  E-value=1.1e-05  Score=33.41  Aligned_cols=25  Identities=32%  Similarity=0.623  Sum_probs=16.4

Q ss_pred             ceecc--ccccccCChhHHHHHHHHcC
Q psy2643          54 PHKCV--VCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus        54 ~~~C~--~C~~~~~~~~~l~~h~~~~~   78 (134)
                      +|.|.  .|++.|.....|..|+++|.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            46666  66666666666666666654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.71  E-value=9.1e-05  Score=37.44  Aligned_cols=45  Identities=18%  Similarity=0.434  Sum_probs=23.7

Q ss_pred             cccccCChhhHHHHHH-hhcCCC------ceecc--ccccccCChhHHHHHHHH
Q psy2643          32 CGKRFHQKSDMKKHTY-IHTGEK------PHKCV--VCGKAFSQSSNLITHLRK   76 (134)
Q Consensus        32 C~~~~~~~~~l~~h~~-~~~~~~------~~~C~--~C~~~~~~~~~l~~h~~~   76 (134)
                      |++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            4555555555555543 233222      46665  466666666666666654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.56  E-value=1.4e-05  Score=45.58  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=23.8

Q ss_pred             HcCCCCCcccCcchhhccChHHHHHHHHhh
Q psy2643          76 KHTGYKPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      .++|+++|.|..|++.|.+.+.|..|++.+
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            466778888888888888888888887554

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=0.0002  Score=33.29  Aligned_cols=31  Identities=23%  Similarity=0.272  Sum_probs=24.4

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (134)
                      .+|.|+.|+..|.....|++|++...++...
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~v~   41 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEMVE   41 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTTCC
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcchhh
Confidence            4688888888888888888888877666543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.34  E-value=0.00028  Score=40.68  Aligned_cols=76  Identities=16%  Similarity=0.254  Sum_probs=48.1

Q ss_pred             CCccCcccccccCChhhHHHHHH--hhcCC-Cceeccc------cccccCChhHHHHHHHHcCCCCCcccCcchhhccCh
Q psy2643          25 RPYPCQYCGKRFHQKSDMKKHTY--IHTGE-KPHKCVV------CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRK   95 (134)
Q Consensus        25 ~~~~c~~C~~~~~~~~~l~~h~~--~~~~~-~~~~C~~------C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~   95 (134)
                      +++.|.+|+..|.+...+..|..  .|... +.|.+..      -+..+....    +.....+.+.|.|..|++.|.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            56889999999999988888873  22211 1121110      011111110    11124456779999999999999


Q ss_pred             HHHHHHHHh
Q psy2643          96 VDLRRHRES  104 (134)
Q Consensus        96 ~~l~~H~~~  104 (134)
                      ..+..|...
T Consensus       107 ~~~~~H~~g  115 (127)
T 1zu1_A          107 VVAESHYIG  115 (127)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHCC
Confidence            999999854

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.04  E-value=0.00037  Score=42.11  Aligned_cols=84  Identities=18%  Similarity=0.307  Sum_probs=56.5

Q ss_pred             CCccCc--ccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHH
Q psy2643          25 RPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR  102 (134)
Q Consensus        25 ~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~  102 (134)
                      ....|+  -|+..+.. ..+..|. .....++..|+.|+..+ ....+..|....-..+...|+.|+..+ ....|..|.
T Consensus        81 l~v~C~n~GC~~~~~~-~~l~~H~-~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~-~~~~l~~H~  156 (170)
T 3hcs_A           81 LMVKCPNEGCLHKMEL-RHLEDHQ-AHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASM-AFEDKEIHD  156 (170)
T ss_dssp             SEEECCSTTCCCEEEG-GGHHHHH-TTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEE-EGGGHHHHH
T ss_pred             cccCCCCCCCCceecH-hHHHHHH-hcCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCcc-CHHHHHhHH
Confidence            345563  46655543 3477775 34556678899999877 455788898877777888899999876 456788998


Q ss_pred             HhhCCCCCCc
Q psy2643         103 ESQHPGSPAQ  112 (134)
Q Consensus       103 ~~~h~~~~~~  112 (134)
                      ....++.++.
T Consensus       157 ~~~~~~~~~~  166 (170)
T 3hcs_A          157 QNCPLALEHH  166 (170)
T ss_dssp             TTCCC-----
T ss_pred             HhCcChhhhh
Confidence            8877776543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.50  E-value=0.0019  Score=28.06  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=23.8

Q ss_pred             CcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      .|.||.|.+.|.+...|..|....|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            3889999999999999999988777653

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.31  E-value=0.0035  Score=29.17  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=14.4

Q ss_pred             CceeccccccccCChhHHHHHHH
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      .+|.|+.|+..|.....|+.|++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            34566666666666666666665

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.24  E-value=0.0011  Score=37.91  Aligned_cols=30  Identities=37%  Similarity=0.657  Sum_probs=25.3

Q ss_pred             HhhcCCCceeccccccccCChhHHHHHHHH
Q psy2643          47 YIHTGEKPHKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus        47 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      ..+.+.++|.|..|++.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            346778899999999999999999988764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.13  E-value=0.0077  Score=34.59  Aligned_cols=71  Identities=23%  Similarity=0.393  Sum_probs=44.3

Q ss_pred             CCcCccccCChHHHHHHH--HHcCCC-CCccC------cccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHH
Q psy2643           1 CKQCGKTFKRSSTLSTHL--LIHSDT-RPYPC------QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLI   71 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~--~~~~~~-~~~~c------~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~   71 (134)
                      |..|+..|.+...+..|.  +.|... +.+.+      +.-+..+...    .+.......+.|.|.+|+..|.+...+.
T Consensus        35 C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             ETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            789999999999999998  333211 01111      0001111111    0112344566789999999999999999


Q ss_pred             HHHH
Q psy2643          72 THLR   75 (134)
Q Consensus        72 ~h~~   75 (134)
                      .|..
T Consensus       111 ~H~~  114 (127)
T 1zu1_A          111 SHYI  114 (127)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            8875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.94  E-value=0.012  Score=35.45  Aligned_cols=70  Identities=16%  Similarity=0.251  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHcCCCCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCc
Q psy2643          11 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPF   83 (134)
Q Consensus        11 ~~~l~~h~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (134)
                      ...+..|.. .-.-.+..|+.|+..+. ...|..|.......+...|..|+..+.. ..+..|...+.|+.++
T Consensus        96 ~~~l~~H~~-~C~~~~v~C~~C~~~~~-r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A           96 LRHLEDHQA-HCEFALMDCPQCQRPFQ-KFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             GGGHHHHHT-TCTTSEEECTTTCCEEE-GGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             HhHHHHHHh-cCCceeeECCCCChHHH-HHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            345667753 33345678999998884 4569999988888888899999988765 5788999888777543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.20  E-value=0.038  Score=23.92  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=19.5

Q ss_pred             CccCcccccccCChhhHHHHHHhhcC
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTYIHTG   51 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~~~~~   51 (134)
                      .|.||.|.+.+.+...|..|....|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            47788888888888878888765543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=93.56  E-value=0.047  Score=28.39  Aligned_cols=46  Identities=24%  Similarity=0.492  Sum_probs=27.2

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHH
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR  102 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~  102 (134)
                      |.|..|+..+.-+ .+..|...-.+...|.|-.|++.|.. ..++.|.
T Consensus        11 F~C~~Cgd~lKK~-kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~Ht   56 (79)
T 1wjv_A           11 FTCNACGESVKKI-QVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHV   56 (79)
T ss_dssp             EEESSSCCEEETT-HHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCC
T ss_pred             EEcCCCCCeeecc-cchhHHhhCCCCCcEEecccCCeeCC-CCEeCEe
Confidence            5677777665543 45666555444445777777777753 3455553

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.24  E-value=0.094  Score=22.86  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=16.6

Q ss_pred             CCcCccccCChHHHHHHHHHcC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHS   22 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~   22 (134)
                      |..|+..|.....+..|.+..-
T Consensus        11 C~~C~IsF~~l~ty~aHKk~YC   32 (36)
T 1fu9_A           11 CSTCDISFNYVKTYLAHKQFYC   32 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHHHTS
T ss_pred             eccccceehhhHHHhhhheecC
Confidence            6678888888888888876543

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=92.66  E-value=0.27  Score=23.48  Aligned_cols=46  Identities=20%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             eccccccccCChhHHHHHHHHcCCCCCcccCcchh-hccChHHHHHHHHh
Q psy2643          56 KCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK-AFQRKVDLRRHRES  104 (134)
Q Consensus        56 ~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~-~f~~~~~l~~H~~~  104 (134)
                      .|++|..-......|..|...-...   +||+|-. ...+.+.|+.|.+.
T Consensus         5 vC~~C~~ECET~kEl~~H~~sCp~g---qCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQSCING---QCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHHHHTTT---BCTTTCCBCCSSHHHHHHHHTT
T ss_pred             hhhHHHhhhhhHHHHHHHhccCCCC---CCCcccCcCCcCHHHHHHHHHH
Confidence            4666666666677777777664333   4666653 44567777777653

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=92.36  E-value=0.096  Score=28.59  Aligned_cols=51  Identities=20%  Similarity=0.402  Sum_probs=38.8

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCCCcccC---cchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG---LCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~---~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      -.|+.|...+.+...       +..+..|.|+   .|.++|.+..+|+.|+...|......
T Consensus        38 k~Cp~C~~~V~rVe~-------~~~~~if~C~~~~~CkrtyLs~rdlqaHI~~~H~~~~~~   91 (101)
T 3vk6_A           38 KMCPGCSDPVQRIEQ-------CTRGSLFMCSIVQGCKRTYLSQRDLQAHINHRHMRAGKP   91 (101)
T ss_dssp             CBCTTTCCBCSEEEE-------EEGGGCCCCCCCCCCCCCCSSHHHHHHHHHHHTTTSCCC
T ss_pred             CCCcCcCCeeeeeEE-------eccCCEEECCCCCCHHHHhcCHHHHHHHHHHHhhhcCCC
Confidence            468889887766533       3446678897   49999999999999998887765443

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=92.26  E-value=0.14  Score=21.59  Aligned_cols=24  Identities=25%  Similarity=0.623  Sum_probs=16.4

Q ss_pred             ccCcchhhccChHHHHHHHHhhCC
Q psy2643          84 SCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      .|..|.+.|+.-.+|..|++..|.
T Consensus        11 hcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            466677777777777777766554

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=92.15  E-value=0.043  Score=29.18  Aligned_cols=24  Identities=33%  Similarity=0.701  Sum_probs=10.7

Q ss_pred             eeccccccccCChhHHHHHHHHcCCCC
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      ..|.+||+.|..   |..|+..+++..
T Consensus        22 iiClecGK~fK~---LkRHL~~~hglt   45 (87)
T 2jsp_A           22 IVCLECGGSFKS---LKRHLTTHHSMT   45 (87)
T ss_dssp             EECTBTCCEESB---HHHHHHHTTCSC
T ss_pred             eEecccchhhHH---HHHHHHHccCCC
Confidence            345555554443   334554444433

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=92.03  E-value=0.25  Score=21.54  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=14.7

Q ss_pred             CcccCcchhhccChHHHHHHHHhh
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      .+.|..|+-.|.+...+..|.+-.
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHHHT
T ss_pred             cCeeccccceehhhHHHhhhheec
Confidence            356666666666666666665543

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=91.96  E-value=0.042  Score=25.59  Aligned_cols=13  Identities=31%  Similarity=0.759  Sum_probs=9.0

Q ss_pred             ceeccccccccCC
Q psy2643          54 PHKCVVCGKAFSQ   66 (134)
Q Consensus        54 ~~~C~~C~~~~~~   66 (134)
                      .|.|.+||..+..
T Consensus         4 ~y~C~vCGyvyd~   16 (46)
T 6rxn_A            4 KYVCNVCGYEYDP   16 (46)
T ss_dssp             CEEETTTCCEECG
T ss_pred             EEECCCCCeEEeC
Confidence            4777778777653

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=90.61  E-value=0.13  Score=28.29  Aligned_cols=29  Identities=31%  Similarity=0.695  Sum_probs=19.3

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhc
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAF   92 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   92 (134)
                      .+|.|..||..|.           ....+|-+||.|+...
T Consensus        66 ~p~~C~~CG~~F~-----------~~~~kPsrCP~CkSe~   94 (105)
T 2gmg_A           66 KPAQCRKCGFVFK-----------AEINIPSRCPKCKSEW   94 (105)
T ss_dssp             CCCBBTTTCCBCC-----------CCSSCCSSCSSSCCCC
T ss_pred             ECcChhhCcCeec-----------ccCCCCCCCcCCCCCc
Confidence            3578888888882           1234667888887543

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=90.37  E-value=0.11  Score=24.84  Aligned_cols=21  Identities=24%  Similarity=0.586  Sum_probs=18.4

Q ss_pred             cccCcchhhccChHHHHHHHH
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      -.|..|+..|..+..++.|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            689999999999999999973

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=89.97  E-value=0.12  Score=32.17  Aligned_cols=25  Identities=28%  Similarity=0.572  Sum_probs=18.7

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      ..|.|..||..+..             +.|+.||.|+-
T Consensus       170 ~~~~C~~CG~i~~g-------------~~p~~CP~C~~  194 (202)
T 1yuz_A          170 KFHLCPICGYIHKG-------------EDFEKCPICFR  194 (202)
T ss_dssp             CEEECSSSCCEEES-------------SCCSBCTTTCC
T ss_pred             cEEEECCCCCEEcC-------------cCCCCCCCCCC
Confidence            35899999988641             45689999984

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=89.70  E-value=0.052  Score=28.27  Aligned_cols=54  Identities=15%  Similarity=0.423  Sum_probs=28.7

Q ss_pred             ccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhcc
Q psy2643          27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQ   93 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   93 (134)
                      ..||.||....+.. |...|...-.        -...|.+...+..-..    +-.|+||.||--|.
T Consensus         9 ~~~PlCG~~L~W~e-LIeQML~~en--------~~ei~kDr~~Fl~~~e----~F~FkCP~CgEEFy   62 (95)
T 2k5c_A            9 AKCPICGSPLKWEE-LIEEMLIIEN--------FEEIVKDRERFLAQVE----EFVFKCPVCGEEFY   62 (95)
T ss_dssp             EECSSSCCEECHHH-HHHHSTTCST--------HHHHTTCHHHHHHHHH----HSEEECTTTCCEEE
T ss_pred             ccCCcCCCccCHHH-HHHHHHhhcc--------HHHHHhhHHHHHHHHH----HHhhcCCCccHHHh
Confidence            47999998887664 5555443221        1123444444433222    23467777776554

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.13  E-value=0.051  Score=28.20  Aligned_cols=29  Identities=24%  Similarity=0.465  Sum_probs=19.1

Q ss_pred             cccCcchhhcc-------ChHHHHHHHHhhCCCCCC
Q psy2643          83 FSCGLCDKAFQ-------RKVDLRRHRESQHPGSPA  111 (134)
Q Consensus        83 ~~C~~C~~~f~-------~~~~l~~H~~~~h~~~~~  111 (134)
                      -.|..|++.+.       .-+.|.+|++..|.+...
T Consensus        29 A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~e~~   64 (76)
T 2djr_A           29 ATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELE   64 (76)
T ss_dssp             EEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHHHHH
T ss_pred             EECCCCCCccCCCCCCCCchHHHHHHHHHHCHHHHH
Confidence            45666666655       345788888888776533

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=88.48  E-value=0.35  Score=29.32  Aligned_cols=38  Identities=18%  Similarity=0.441  Sum_probs=27.7

Q ss_pred             hhHHHHHHHHcCCCC-------CcccCcchhhccChHHHHHHHHhh
Q psy2643          67 SSNLITHLRKHTGYK-------PFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        67 ~~~l~~h~~~~~~~~-------~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      .+.|..|++..--..       -|+|..||| |....+|.+|++.|
T Consensus       132 GgrlieHlK~~~~~GqDyvFWQFYKCe~CgK-YvDId~~~~Hlk~H  176 (226)
T 2czr_A          132 GAALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREH  176 (226)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTT
T ss_pred             hHHHHHHHHhccccCcceEEEEEEehhhcCc-eecHHHHHHHHHHc
Confidence            456778887543221       389999997 67888999999866

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=86.95  E-value=0.34  Score=25.20  Aligned_cols=47  Identities=23%  Similarity=0.510  Sum_probs=33.7

Q ss_pred             CCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHH
Q psy2643          25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH   73 (134)
Q Consensus        25 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h   73 (134)
                      ..|.|..|+.++.-.. +..|...-.+...|.|.-|+..|... ..+.|
T Consensus         9 V~F~C~~Cgd~lKK~k-v~~H~~~Cr~~~~~SCIDC~~~F~~~-~y~~H   55 (79)
T 1wjv_A            9 VFFTCNACGESVKKIQ-VEKHVSNCRNCECLSCIDCGKDFWGD-DYKSH   55 (79)
T ss_dssp             CEEEESSSCCEEETTH-HHHHHHHCTTCCEEEETTTTEEEEGG-GTTTC
T ss_pred             eEEEcCCCCCeeeccc-chhHHhhCCCCCcEEecccCCeeCCC-CEeCE
Confidence            3478999998887664 88886544444568999999999753 44444

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=86.34  E-value=0.62  Score=19.10  Aligned_cols=19  Identities=26%  Similarity=0.586  Sum_probs=13.9

Q ss_pred             CCcCccccCChHHHHHHHH
Q psy2643           1 CKQCGKTFKRSSTLSTHLL   19 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~   19 (134)
                      |+.|.....+...|+.|..
T Consensus         6 CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            6 CPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CTTSSCEESSHHHHHHHHH
T ss_pred             CccccccCcChHHHHHHHH
Confidence            6777777777777777754

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=85.50  E-value=0.37  Score=29.04  Aligned_cols=25  Identities=28%  Similarity=0.610  Sum_probs=17.9

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      ..|.|..||..+..             +-|-.||.||.
T Consensus       137 ~~~~C~~CG~i~~~-------------~~p~~CP~Cg~  161 (170)
T 3pwf_A          137 KVYICPICGYTAVD-------------EAPEYCPVCGA  161 (170)
T ss_dssp             CEEECTTTCCEEES-------------CCCSBCTTTCC
T ss_pred             CeeEeCCCCCeeCC-------------CCCCCCCCCCC
Confidence            45889999988751             44558999883

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=84.16  E-value=0.55  Score=26.44  Aligned_cols=26  Identities=19%  Similarity=0.583  Sum_probs=19.2

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCc-ccCcchhh
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPF-SCGLCDKA   91 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~-~C~~C~~~   91 (134)
                      .|.|..||..|...            +.++ .||.||..
T Consensus        73 ~~~C~~CG~~~e~~------------~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           73 ELECKDCSHVFKPN------------ALDYGVCEKCHSK   99 (119)
T ss_dssp             EEECSSSSCEECSC------------CSTTCCCSSSSSC
T ss_pred             eEEcCCCCCEEeCC------------CCCCCcCccccCC
Confidence            48899999888652            3457 79999854

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=83.62  E-value=0.39  Score=24.49  Aligned_cols=33  Identities=24%  Similarity=0.576  Sum_probs=13.9

Q ss_pred             ccccccCChhhHHHHHHhhcCCCceecccccccc
Q psy2643          31 YCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAF   64 (134)
Q Consensus        31 ~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~   64 (134)
                      .|+..+... .|..|.......+...|..|+..+
T Consensus        22 ~C~~~v~r~-~l~~H~~~~C~~r~v~C~~C~~~~   54 (76)
T 2yuc_A           22 RCPMKLSRR-DLPAHLQHDCPKRRLKCEFCGCDF   54 (76)
T ss_dssp             CCSCBCCSS-SSTTTTTTSCTTSCCCCSSSCCCC
T ss_pred             cccHHhhHh-HHHhhCHhhCCCcceECCCCCCcc
Confidence            344444332 244444333333444444444443

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=83.20  E-value=0.75  Score=28.59  Aligned_cols=26  Identities=23%  Similarity=0.526  Sum_probs=22.4

Q ss_pred             CCCcccCcchhhccC-hHHHHHHHHhh
Q psy2643          80 YKPFSCGLCDKAFQR-KVDLRRHRESQ  105 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~-~~~l~~H~~~~  105 (134)
                      ..+..|..|+..|.+ -..|+.|+..+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            457899999999986 99999998765

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=82.49  E-value=0.16  Score=26.83  Aligned_cols=30  Identities=30%  Similarity=0.726  Sum_probs=16.3

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhcc
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQ   93 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   93 (134)
                      .|.|+.||......          .+...|.|+.|++.|+
T Consensus        27 ~y~Cp~CG~~~v~r----------~atGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           27 DHACPNCGEDRVDR----------QGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             CEECSSSCCEEEEE----------EETTEEEETTTCCEEE
T ss_pred             cCcCCCCCCcceec----------cCCCeEECCCCCCEec
Confidence            46777777532111          1123577777776654

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=81.16  E-value=1  Score=23.02  Aligned_cols=31  Identities=23%  Similarity=0.554  Sum_probs=18.3

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQR   94 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~   94 (134)
                      .|.|+.|+..-..          -.+...|.|..|++.|+-
T Consensus        26 ky~C~fCgk~~vk----------R~a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           26 RYDCSFCGKKTVK----------RGAAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             CBCCSSCCSSCBS----------BCSSSCBCCSSSCCCCCC
T ss_pred             CccCCCCCCceeE----------ecCCCeEECCCCCCEEeC
Confidence            4677777754211          123455778888777653

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=80.02  E-value=1  Score=22.85  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=18.5

Q ss_pred             CCCceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          51 GEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        51 ~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      ....|.|..||..|...          . ..+..|+.||.
T Consensus        25 ~~v~Y~C~~CG~~~e~~----------~-~d~irCp~CG~   53 (70)
T 1twf_L           25 ATLKYICAECSSKLSLS----------R-TDAVRCKDCGH   53 (70)
T ss_dssp             CCCCEECSSSCCEECCC----------T-TSTTCCSSSCC
T ss_pred             ceEEEECCCCCCcceeC----------C-CCCccCCCCCc
Confidence            34567888888776553          1 12357888886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	7e-12
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	7e-08
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	3e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.004
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	8e-10
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	5e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	8e-10
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-09
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-09
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-09
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	3e-07
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-06
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	4e-09
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	4e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	7e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-08
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-05
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	1e-08
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	2e-05
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.003
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	6e-08
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	2e-07
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-07
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	4e-04
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	4e-07
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	7e-07
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	4e-05
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	1e-06
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	0.002
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	1e-06
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	1e-04
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	1e-06
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-06
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	2e-06
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	0.001
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	3e-06
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.001
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-06
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	1e-05
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	9e-06
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	2e-04
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	3e-04
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	6e-04
d2eppa1	53	g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [	0.002
d2dmda2	26	g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {H	0.002

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (130), Expect = 7e-12
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
          IH+GEKP+ CV CGKAFS+SS L+ H R HTG
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (104), Expect = 7e-08
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
          IHS  +PY C  CGK F + S + +H  +HTGE
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (78), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 77  HTGYKPFSCGLCDKAFQRKVDLRRHR 102
           H+G KP+ C  C KAF R   L +H+
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQ 27

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.7 bits (70), Expect = 0.004
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHS 22
          C +CGK F RSS L  H  +H+
Sbjct: 10 CVECGKAFSRSSILVQHQRVHT 31

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (117), Expect = 8e-10
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
           HTGEKP+ C  C K F Q   L  H +++  
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 5e-06
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
           H+  +PY C +C K F QK  +  H   +    
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 75  RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           R HTG KP++C  CDK F++K  L  H +  H
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (117), Expect = 8e-10
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRK-HTGYKPFSC 85
          +  KP+ C  CGK FS+  +L  H+++ HT  +P  C
Sbjct: 1  SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (114), Expect = 2e-09
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 22 SDTRPYPCQYCGKRFHQKSDMKKHT-YIHTGEKPHKCVV 59
          S  +PY CQ CGK F +   +  H   +HT E+PHKC V
Sbjct: 1  SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 1  CKQCGKTFKRSSTLSTHL-LIHSDTRPYPCQ 30
          C+ CGK F R   L+ H+  +H+  RP+ CQ
Sbjct: 8  CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (115), Expect = 1e-09
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
           H+GEKP++C +C   F+QS  +  H+ +   
Sbjct: 2  THSGEKPYECYICHARFTQSGTMKMHILQKHT 33

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (84), Expect = 4e-05
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
           HS  +PY C  C  RF Q   MK H      E 
Sbjct: 2  THSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (84), Expect = 6e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 75  RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
           R H+G KP+ C +C   F +   ++ H   +H
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 2e-09
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
          + YPCQ CGK F  KS   +H  +H G +P+ C VCGK F    +L+ H++ H
Sbjct: 2  KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 3e-07
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 52  EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
           +K + C  CGK+F+  S    H+  H G +P+ CG+C K F+ K  L  H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-06
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 3  QCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIH 49
          QCGK+F   S    H+ +H   RPY C  CGK+F  K  +  H  IH
Sbjct: 7  QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (112), Expect = 4e-09
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
           T   TG KP +C  C ++FS+S +L  H ++H  
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.6 bits (77), Expect = 4e-04
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTG 51
               +  +P+ C  C + F +   +  H   H  
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (76), Expect = 7e-04
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 73  HLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
             R  TG KPF C  CD++F R   L  HR
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 1e-08
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
          +  +     + +KC  CGK+FS SS+L  H R HTG
Sbjct: 2  RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 1e-05
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
                + R Y C  CGK F   SD+ KH   HTGE
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (108), Expect = 1e-08
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTG 79
          +KP +C +C + FS+S +L TH+R HTG
Sbjct: 1  QKPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (87), Expect = 2e-05
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTG 51
          +P+ C+ C + F +   +  H   HTG
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.0 bits (71), Expect = 0.003
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHS 22
          C+ C + F RS  L+TH+  H+
Sbjct: 6  CRICMRNFSRSDHLTTHIRTHT 27

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 43.8 bits (104), Expect = 6e-08
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
          +   C VC +AF++  +L  H R HT  K
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 42.2 bits (100), Expect = 2e-07
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
          R + C+ C + F ++  +K+H   HT EK
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (101), Expect = 2e-07
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
           +G++P  C +C  AF+  +N   HL+ HT 
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.6 bits (77), Expect = 4e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
           S  RP+ C+ C   F  K++  +H  +HT  
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 4e-07
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 56 KCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
              CGK+F+   +L  H++ H+  + + C
Sbjct: 5  PEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (97), Expect = 7e-07
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 28 PCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
          P   CGK F+ K  +K+H  +H+  + + C
Sbjct: 5  PEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 1  CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY 31
             CGK+F     L  H+ +HSDTR Y C++
Sbjct: 6  EPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (95), Expect = 1e-06
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHT 78
          KP+KC+ CGKAFSQ+S LI H R HT
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIHT 26

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (73), Expect = 0.002
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHT 50
          +PY C  CGK F Q S +  H  IHT
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIHT 26

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 1e-06
 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 53 KPHKC--VVCGKAFSQSSNLITHLRKHTG 79
          KPHKC    C K++S+  NL THLR HTG
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 1e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGE 52
          +P+ C +  C K + +  ++K H   HTGE
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 1e-06
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
          K   C  C K F +S +L  H++ H   K
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (92), Expect = 3e-06
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
          + + C  C KRF +   + KH   H  +K
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (93), Expect = 2e-06
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 53 KPHKC--VVCGKAFSQSSNLITHLRKHTG 79
          +P+ C    C + FS+S++L  H+R HTG
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.3 bits (74), Expect = 0.001
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTG 51
          RPY C    C +RF + +D+ +H  IHTG
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (92), Expect = 3e-06
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 52 EKPHKCVV--CGKAFSQSSNLITHLRKHTG 79
          ++P+ C    C KAF ++ +LI H + H  
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.3 bits (74), Expect = 0.001
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGE 52
          RPY C +  C K F +  D+ +H   H  +
Sbjct: 2  RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (92), Expect = 3e-06
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 53 KPHKCVV--CGKAFSQSSNLITHLRKHTGYK 81
          +P  C    CGK F++S  L  H R HTG K
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEK 53
          RP+ C +  CGKRF +  ++++H   HTGEK
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 9e-06
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 53 KPHKC--VVCGKAFSQSSNLITHLRKHTG 79
          KP +C    CGK FS   NL TH+R HTG
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGE 52
          +P+ C +  CGKRF    +++ H  IHTG+
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 3e-04
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 53 KPHKCVV--CGKAFSQSSNLITHLRKHT 78
          +P+ C    C K F+QS+NL +H+  H 
Sbjct: 1  RPYVCPFDGCNKKFAQSTNLKSHILTHA 28

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.4 bits (76), Expect = 6e-04
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 44 KHTYIHTGEKPHKCVVC--GKAFSQSSNLITHLRKHTGYK 81
                  +K  +C+     K F +  N+ +H++ H   +
Sbjct: 8  DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 83  FSCGLCDKAFQRKVDLRRHRESQH 106
             CGLC K F     LR+H E+QH
Sbjct: 7   LPCGLCGKVFTDANRLRQH-EAQH 29

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (72), Expect = 0.002
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 54 PHKCVVCGKAFSQSSNLITHLRKHTG 79
          PHKC VCGK FS+   L TH+R HTG
Sbjct: 1  PHKCEVCGKCFSRKDKLKTHMRCHTG 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.76
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.64
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.42
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.42
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.4
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.39
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.37
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.3
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.25
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.22
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.21
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.18
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.15
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.15
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.08
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.06
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.05
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.04
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.04
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.0
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.99
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.98
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.98
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.98
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.92
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.85
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.85
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.84
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.84
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.75
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.75
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.74
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.72
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.69
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.61
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.44
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.43
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.38
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.38
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.28
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.26
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.24
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.21
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.12
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.1
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.1
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.09
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.03
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.95
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.91
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.88
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.86
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.85
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.84
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.68
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.66
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.64
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.63
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.57
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.54
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.51
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.5
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.42
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.33
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.28
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.24
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.15
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.14
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.14
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.11
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.05
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.04
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.93
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.87
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.86
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.78
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.69
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.59
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.51
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.48
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.43
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.32
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.17
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	96.14
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.14
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.1
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	96.07
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.97
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.75
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.54
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.34
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.13
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.1
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.76
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	94.34
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.03
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.98
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.62
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	93.33
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	93.22
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.17
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.01
d1fu9a_	36	U-shaped transcription factor, different fingers {	91.92
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	91.9
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.95
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	89.51
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	89.49
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	86.05
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.97
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	85.5
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	81.62
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	81.36
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	80.23

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-19  Score=87.46  Aligned_cols=53  Identities=36%  Similarity=0.771  Sum_probs=49.0

Q ss_pred             CCceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhccChHHHHHHHHhh
Q psy2643          52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        52 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      +++|.|. ||+.|.....|..|+++|.+++||.|..||++|...+.|.+|++.|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5789995 9999999999999999999999999999999999999999998865

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-16  Score=77.75  Aligned_cols=53  Identities=42%  Similarity=0.911  Sum_probs=48.2

Q ss_pred             CCCccCcccccccCChhhHHHHHHhhcCCCceeccccccccCChhHHHHHHHHc
Q psy2643          24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        24 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      +++|.| .||+.|.....|..|++.|.++++|.|..|++.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578999 49999999999999999999999999999999999999999998875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.6e-14  Score=62.57  Aligned_cols=35  Identities=43%  Similarity=0.768  Sum_probs=31.0

Q ss_pred             HHcCCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          75 RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      ++|++++||.|..|+++|+..+.|..|++.|+.+.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            46899999999999999999999999999987653

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.4e-14  Score=65.10  Aligned_cols=36  Identities=22%  Similarity=0.521  Sum_probs=31.1

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      |+++|.+++||.|..|||+|...+.|.+|+++|.++
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            667788999999999999999999999999888764

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.2e-14  Score=60.59  Aligned_cols=33  Identities=36%  Similarity=0.650  Sum_probs=28.5

Q ss_pred             HcCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          76 KHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +|++++||.|..||++|...+.|..|++.|.++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478899999999999999999999999988764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7.8e-14  Score=61.72  Aligned_cols=35  Identities=29%  Similarity=0.679  Sum_probs=31.3

Q ss_pred             HHcCCCCCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          75 RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      ++|+||+||.|+.|++.|+..++|.+|++.+|.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            46899999999999999999999999998888764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=5.4e-14  Score=62.76  Aligned_cols=34  Identities=41%  Similarity=0.750  Sum_probs=30.4

Q ss_pred             HHHHcCCCCCcccCcchhhccChHHHHHHHHhhC
Q psy2643          73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      |.+.|++|+||.|..|++.|+..+.|.+|++.|-
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5678999999999999999999999999998874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.2e-13  Score=59.19  Aligned_cols=35  Identities=40%  Similarity=0.821  Sum_probs=25.0

Q ss_pred             CCceeccccccccCChhHHHHHHH-HcCCCCCcccC
Q psy2643          52 EKPHKCVVCGKAFSQSSNLITHLR-KHTGYKPFSCG   86 (134)
Q Consensus        52 ~~~~~C~~C~~~~~~~~~l~~h~~-~~~~~~~~~C~   86 (134)
                      ++||.|..||+.|....+|..|++ +|++++||.|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            567777777777777777777765 57777777764

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=7.6e-13  Score=57.85  Aligned_cols=32  Identities=31%  Similarity=0.661  Sum_probs=27.2

Q ss_pred             cCCCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      |+|++||.|..|++.|+..+.|.+|++.|...
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            67889999999999999999999998887543

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.1e-12  Score=54.42  Aligned_cols=28  Identities=32%  Similarity=0.695  Sum_probs=23.2

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhhCC
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      ||||.|+.|+++|+..+.|.+|+++|.+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5788888888888888888888888753

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.4e-12  Score=58.43  Aligned_cols=36  Identities=42%  Similarity=0.692  Sum_probs=21.4

Q ss_pred             HHHhhcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        45 h~~~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |++.|.+++||.|..||+.|...++|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            445555666666666666666666666666666554

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.21  E-value=4.2e-12  Score=53.22  Aligned_cols=29  Identities=34%  Similarity=0.772  Sum_probs=22.0

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      +||.|++|+++|+..+.|.+|+++|.+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            47778888888888888888887777653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.9e-12  Score=52.44  Aligned_cols=29  Identities=31%  Similarity=0.607  Sum_probs=22.2

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      +||.|+.|++.|...+.|.+|+++|.+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57788888888888888888888777653

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=55.46  Aligned_cols=37  Identities=46%  Similarity=0.963  Sum_probs=32.4

Q ss_pred             CCCCccCcccccccCChhhHHHHHH-hhcCCCceeccc
Q psy2643          23 DTRPYPCQYCGKRFHQKSDMKKHTY-IHTGEKPHKCVV   59 (134)
Q Consensus        23 ~~~~~~c~~C~~~~~~~~~l~~h~~-~~~~~~~~~C~~   59 (134)
                      .++||.|.+||+.|.....|..|++ .|.+++||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999999999999999975 699999999874

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.1e-12  Score=50.49  Aligned_cols=25  Identities=36%  Similarity=0.737  Sum_probs=23.0

Q ss_pred             CCcccCcchhhccChHHHHHHHHhh
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      |||+|.+|||+|...+.|..|++.|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            6899999999999999999999887

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.8e-11  Score=52.71  Aligned_cols=32  Identities=66%  Similarity=1.052  Sum_probs=19.5

Q ss_pred             hcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |.+++||.|..|++.|...+.|..|+++|++|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            45566666666666666666666666666554

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5e-11  Score=52.53  Aligned_cols=33  Identities=39%  Similarity=0.652  Sum_probs=17.3

Q ss_pred             hhcCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        48 ~~~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +|.+++||.|..|++.|...+.|..|+++|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            345555555555555555555555555555443

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=2.3e-11  Score=54.04  Aligned_cols=32  Identities=19%  Similarity=0.496  Sum_probs=16.3

Q ss_pred             HHHcCCCCCccCcccccccCChhhHHHHHHhh
Q psy2643          18 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIH   49 (134)
Q Consensus        18 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~   49 (134)
                      .++|++++||.|+.|++.|.....|..|++.|
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            34455555555555555555555555555444

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=3.6e-12  Score=59.57  Aligned_cols=38  Identities=24%  Similarity=0.542  Sum_probs=26.2

Q ss_pred             HHHHHHHcCCCCCcccCc--chhhccChHHHHHHHHhhCCC
Q psy2643          70 LITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        70 l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +..|+. |.+++||.|.+  |++.|+..+.|.+|++.|.++
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            344453 67777777765  777777777777777777665

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.04  E-value=8.2e-11  Score=49.16  Aligned_cols=29  Identities=38%  Similarity=0.723  Sum_probs=20.9

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      +||.|.+|++.|.....|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            46777777777777777777777777764

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=1.1e-10  Score=50.84  Aligned_cols=31  Identities=35%  Similarity=0.739  Sum_probs=20.4

Q ss_pred             cCCCceeccccccccCChhHHHHHHHHcCCC
Q psy2643          50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        50 ~~~~~~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      .+++||.|.+|++.|....+|..|+++|+++
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            4666666666666666666666666666544

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-10  Score=51.09  Aligned_cols=32  Identities=28%  Similarity=0.727  Sum_probs=22.6

Q ss_pred             eeccc--cccccCChhHHHHHHHHcCCCCCcccC
Q psy2643          55 HKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCG   86 (134)
Q Consensus        55 ~~C~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (134)
                      |.|+.  |++.|.....|..|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45654  777777777777777777777777764

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.8e-10  Score=48.01  Aligned_cols=29  Identities=34%  Similarity=0.630  Sum_probs=19.0

Q ss_pred             CceeccccccccCChhHHHHHHHHcCCCC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      +||.|.+|++.|.....|..|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            35666666666666666666666666654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-10  Score=48.58  Aligned_cols=28  Identities=32%  Similarity=0.694  Sum_probs=21.6

Q ss_pred             CCcccCc--chhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCGL--CDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +||.|+.  |+++|+..+.|++|++.|.++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5778876  888888888888888877664

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.5e-10  Score=47.79  Aligned_cols=28  Identities=50%  Similarity=1.024  Sum_probs=18.2

Q ss_pred             CCceeccccccccCChhHHHHHHHHcCC
Q psy2643          52 EKPHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        52 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      ++||.|..|++.|...+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            3566666666666666666666666653

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-10  Score=50.90  Aligned_cols=27  Identities=41%  Similarity=0.877  Sum_probs=13.4

Q ss_pred             hcCCCceeccccccccCChhHHHHHHH
Q psy2643          49 HTGEKPHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus        49 ~~~~~~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      |.+++||.|+.|++.|....+|..|++
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcc
Confidence            444455555555555555555555543

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.1e-10  Score=48.21  Aligned_cols=28  Identities=36%  Similarity=0.749  Sum_probs=20.9

Q ss_pred             CCcccCc--chhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCGL--CDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +||.|+.  |+++|+..+.|.+|++.|.++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5777865  888888888888888777653

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.2e-09  Score=46.47  Aligned_cols=29  Identities=48%  Similarity=0.910  Sum_probs=23.9

Q ss_pred             CCCcccCc--chhhccChHHHHHHHHhhCCC
Q psy2643          80 YKPFSCGL--CDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        80 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      |+||.|+.  |++.|+..+.|.+|++.|...
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57888876  999999999999998888653

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.1e-10  Score=48.38  Aligned_cols=27  Identities=33%  Similarity=0.722  Sum_probs=15.1

Q ss_pred             cccccCChhhHHHHHHhhcCCCceecc
Q psy2643          32 CGKRFHQKSDMKKHTYIHTGEKPHKCV   58 (134)
Q Consensus        32 C~~~~~~~~~l~~h~~~~~~~~~~~C~   58 (134)
                      |++.|.....|..|++.|.+++||.|+
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCeeCChhHhccccCeeCCCCCEeCC
Confidence            555555555555555555555555553

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=2.2e-10  Score=53.34  Aligned_cols=39  Identities=23%  Similarity=0.524  Sum_probs=30.5

Q ss_pred             HHHHHHhhcCCCceeccc--cccccCChhHHHHHHHHcCCCC
Q psy2643          42 MKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        42 l~~h~~~~~~~~~~~C~~--C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      +..|+ .+.++++|.|.+  |++.|...++|..|+++|++++
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            45555 378888888876  8888888888888888888875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.4e-10  Score=46.52  Aligned_cols=28  Identities=36%  Similarity=0.850  Sum_probs=20.6

Q ss_pred             CCcccC--cchhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCG--LCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +||.|+  .|++.|+..+.|.+|+++|.++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            467774  4888888888888887777665

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-09  Score=43.18  Aligned_cols=25  Identities=68%  Similarity=1.116  Sum_probs=14.7

Q ss_pred             CceeccccccccCChhHHHHHHHHc
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      +||+|..||+.|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            3556666666666666666665554

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.2e-09  Score=44.04  Aligned_cols=28  Identities=61%  Similarity=1.055  Sum_probs=19.9

Q ss_pred             Cceeccc--cccccCChhHHHHHHHHcCCC
Q psy2643          53 KPHKCVV--CGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        53 ~~~~C~~--C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +||.|..  |++.|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4677766  777777777777777777664

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=1.3e-09  Score=45.23  Aligned_cols=27  Identities=37%  Similarity=0.904  Sum_probs=21.4

Q ss_pred             CCcccCc--chhhccChHHHHHHHHhhCC
Q psy2643          81 KPFSCGL--CDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  107 (134)
                      +||.|++  |+++|+..+.|.+|++.|.+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5788866  88888888888888887743

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.8e-09  Score=44.33  Aligned_cols=26  Identities=27%  Similarity=0.802  Sum_probs=21.3

Q ss_pred             CCcccCc--chhhccChHHHHHHHHhhC
Q psy2643          81 KPFSCGL--CDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~h  106 (134)
                      +||.|+.  |+|+|+..+.|++|++.|.
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5788866  8888888888888888763

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.2e-09  Score=43.80  Aligned_cols=28  Identities=57%  Similarity=0.956  Sum_probs=19.3

Q ss_pred             Cceeccc--cccccCChhHHHHHHHHcCCC
Q psy2643          53 KPHKCVV--CGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        53 ~~~~C~~--C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      +||.|..  |++.|.....|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4667765  777777777777777777664

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.7e-08  Score=42.52  Aligned_cols=29  Identities=48%  Similarity=0.915  Sum_probs=20.0

Q ss_pred             Cceecc--ccccccCChhHHHHHHHHcCCCC
Q psy2643          53 KPHKCV--VCGKAFSQSSNLITHLRKHTGYK   81 (134)
Q Consensus        53 ~~~~C~--~C~~~~~~~~~l~~h~~~~~~~~   81 (134)
                      +||.|+  .|++.|....+|..|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            456674  37777777777777777777664

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=4.2e-08  Score=38.82  Aligned_cols=26  Identities=35%  Similarity=0.865  Sum_probs=20.6

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhh
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      |+||.|..||+.|+.+...++|.+.|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            57788888888888888888887765

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=1e-07  Score=40.30  Aligned_cols=28  Identities=36%  Similarity=0.771  Sum_probs=19.1

Q ss_pred             CCceeccc--cccccCChhHHHHHHHHcCC
Q psy2643          52 EKPHKCVV--CGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        52 ~~~~~C~~--C~~~~~~~~~l~~h~~~~~~   79 (134)
                      ++||.|..  |++.|....+|..|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            35677766  77777777777777776654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=7.2e-08  Score=38.70  Aligned_cols=27  Identities=37%  Similarity=0.840  Sum_probs=21.6

Q ss_pred             CCcccCc--chhhccChHHHHHHHHhhCC
Q psy2643          81 KPFSCGL--CDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  107 (134)
                      +||.|..  |+|+|...++|+.|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5778855  88888888888888887774

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=6.7e-08  Score=39.91  Aligned_cols=27  Identities=48%  Similarity=0.992  Sum_probs=17.1

Q ss_pred             Cceeccc--cccccCChhHHHHHHHHcCC
Q psy2643          53 KPHKCVV--CGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        53 ~~~~C~~--C~~~~~~~~~l~~h~~~~~~   79 (134)
                      +||.|.+  |++.|....+|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            3566655  66666666666666666643

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.1e-07  Score=36.35  Aligned_cols=25  Identities=36%  Similarity=0.804  Sum_probs=19.0

Q ss_pred             CcccCcchhhccChHHHHHHHHhhC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      |.+|+.|++.|+....|+.|++.|.
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            4577888888888888888877664

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.5e-07  Score=38.38  Aligned_cols=25  Identities=44%  Similarity=0.870  Sum_probs=16.0

Q ss_pred             Cceeccc--cccccCChhHHHHHHHHc
Q psy2643          53 KPHKCVV--CGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        53 ~~~~C~~--C~~~~~~~~~l~~h~~~~   77 (134)
                      +||.|..  |++.|....+|..|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            3566655  666666666666666665

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=5.5e-07  Score=35.56  Aligned_cols=27  Identities=37%  Similarity=0.798  Sum_probs=21.9

Q ss_pred             CCceeccccccccCChhHHHHHHHHcC
Q psy2643          52 EKPHKCVVCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus        52 ~~~~~C~~C~~~~~~~~~l~~h~~~~~   78 (134)
                      ++||.|++||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            468888888888888888888888764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.9e-07  Score=35.82  Aligned_cols=29  Identities=21%  Similarity=0.543  Sum_probs=24.0

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      +||.|..|....++.++|+.|+++.|+..
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            57888888888888889999988888653

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.7e-07  Score=36.26  Aligned_cols=26  Identities=38%  Similarity=0.781  Sum_probs=13.8

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      +||.|+.|+..|....-+.-|.+.|-
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCcccchHHHHhhccccceEeeeccc
Confidence            45555555555555555555555543

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.8e-07  Score=36.84  Aligned_cols=28  Identities=39%  Similarity=0.820  Sum_probs=13.5

Q ss_pred             eccccccccCChhHHHHHHHHcCCCCCc
Q psy2643          56 KCVVCGKAFSQSSNLITHLRKHTGYKPF   83 (134)
Q Consensus        56 ~C~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (134)
                      .|.+||+.|.+.-.|.+|.-.|.+|+||
T Consensus         7 ~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           7 ACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            3444444444444444444444444444

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.9e-07  Score=34.99  Aligned_cols=27  Identities=52%  Similarity=0.898  Sum_probs=12.6

Q ss_pred             CceeccccccccCChhHHHHHHHHcCC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      +||+|+.|.....+.+.|.-|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            344444444444444444444444443

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=9.9e-07  Score=36.13  Aligned_cols=32  Identities=31%  Similarity=0.614  Sum_probs=28.6

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      +...|..|||.|.+-..|.+|...|.+++|++
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            44689999999999999999999999999874

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=9.1e-07  Score=34.65  Aligned_cols=29  Identities=28%  Similarity=0.526  Sum_probs=26.2

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ++||+|..|...-...++|..|.+.|.++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            58999999999999999999999988763

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=9e-07  Score=34.49  Aligned_cols=24  Identities=46%  Similarity=0.941  Sum_probs=18.7

Q ss_pred             CCcCccccCChHHHHHHHHHcCCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDT   24 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~   24 (134)
                      |.+||+.|...+.|+.|+.+|+++
T Consensus         5 c~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           5 CAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             HHHHhHHHHHHHHHHHHhhcccCC
Confidence            677888888888888888777764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.1e-06  Score=34.27  Aligned_cols=25  Identities=32%  Similarity=0.603  Sum_probs=18.4

Q ss_pred             cccCcchhhccChHHHHHHHHhhCC
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      ..|..|||+|.-.+.|++|+-.|.+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            4577788888877788887776654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.4e-06  Score=33.62  Aligned_cols=26  Identities=35%  Similarity=0.534  Sum_probs=11.7

Q ss_pred             eeccccccccCChhHHHHHHHHcCCC
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKHTGY   80 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~~~~   80 (134)
                      |.|+.|+.....++-|+.|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            34444444444444444444444443

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.6e-06  Score=34.67  Aligned_cols=27  Identities=41%  Similarity=0.876  Sum_probs=15.5

Q ss_pred             CceeccccccccCChhHHHHHHHHcCC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      +||.|++|...|....-+.-|.+.|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            455566666666665555555555544

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.6e-06  Score=33.09  Aligned_cols=23  Identities=43%  Similarity=0.930  Sum_probs=16.5

Q ss_pred             CCcCccccCChHHHHHHHHHcCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSD   23 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~   23 (134)
                      |..|++-|..+..|..||+.|++
T Consensus         4 c~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           4 CEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             BTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             cchhhhHhcchhHHHHHhhccCC
Confidence            56777777777777777777654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.95  E-value=2.5e-06  Score=32.21  Aligned_cols=23  Identities=39%  Similarity=1.009  Sum_probs=20.1

Q ss_pred             cccCcchhhccChHHHHHHHHhh
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      |+|..|.++|.-.+.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            67889999999999999998876

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5e-06  Score=32.66  Aligned_cols=26  Identities=15%  Similarity=0.376  Sum_probs=24.2

Q ss_pred             cccCcchhhccChHHHHHHHHhhCCC
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      |.|+.||......+-|+.|++.|.++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            78999999999999999999999765

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.88  E-value=5.3e-06  Score=35.60  Aligned_cols=29  Identities=17%  Similarity=0.558  Sum_probs=21.8

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      .+.|.|..|++.|.+...|.-|++.|..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            34578888888888888888888776544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=9e-06  Score=32.46  Aligned_cols=27  Identities=33%  Similarity=0.730  Sum_probs=20.8

Q ss_pred             Cceeccc--cccccCChhHHHHHHHHcCC
Q psy2643          53 KPHKCVV--CGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        53 ~~~~C~~--C~~~~~~~~~l~~h~~~~~~   79 (134)
                      +||.|.+  |++.+..+++|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4677876  88888888888888887553

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.85  E-value=5e-06  Score=33.51  Aligned_cols=28  Identities=46%  Similarity=1.035  Sum_probs=23.3

Q ss_pred             CcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      ||.|..|++.|+.+.-|.+|+..-|+..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcCc
Confidence            6889999999999999999987777654

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=6.9e-06  Score=31.82  Aligned_cols=25  Identities=32%  Similarity=0.654  Sum_probs=18.6

Q ss_pred             CCcccCcchhhccChHHHHHHHHhh
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      +||+|..|...-+..++|..|++.|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            5677777777777777777777765

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.4e-05  Score=34.53  Aligned_cols=26  Identities=38%  Similarity=0.883  Sum_probs=21.6

Q ss_pred             CCCCCcccCcchhhccChHHHHHHHH
Q psy2643          78 TGYKPFSCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      +|-+||.|..|+|.|.-+.++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            35688999999999999998888864

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.66  E-value=1.8e-05  Score=30.99  Aligned_cols=25  Identities=36%  Similarity=0.798  Sum_probs=20.2

Q ss_pred             CCcccCc--chhhccChHHHHHHHHhh
Q psy2643          81 KPFSCGL--CDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~  105 (134)
                      .||.|+.  |++.|+..+-|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4788864  889999999999997765

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=3.6e-05  Score=29.39  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=17.3

Q ss_pred             CCcCccccCChHHHHHHHHHcCCCC
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIHSDTR   25 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~~~~~   25 (134)
                      |+.|.+.|.++.-|..|-+.|++++
T Consensus         3 cp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             CcchHHHHHHhHhhhhccccccCCC
Confidence            6677777777777777777776653

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=4e-05  Score=30.20  Aligned_cols=24  Identities=38%  Similarity=0.580  Sum_probs=18.5

Q ss_pred             CceeccccccccCChhHHHHHHHH
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      +||.|+.|.....+.++|..|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            467788888777788888888776

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.1e-05  Score=32.53  Aligned_cols=25  Identities=36%  Similarity=0.829  Sum_probs=18.7

Q ss_pred             CCcccCc--chhhccChHHHHHHH-Hhh
Q psy2643          81 KPFSCGL--CDKAFQRKVDLRRHR-ESQ  105 (134)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~-~~~  105 (134)
                      +||.|..  |.|+|+..++.-.|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            4777855  888888888888887 444

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.54  E-value=3.8e-05  Score=32.88  Aligned_cols=25  Identities=24%  Similarity=0.792  Sum_probs=12.7

Q ss_pred             CccCcccccccCChhhHHHHHHhhc
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTYIHT   50 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~~~~   50 (134)
                      .|.|.+|++.|.+...|-.|++.|.
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             ccCCCCCCCccCCcccccchHhhhc
Confidence            3455555555555555555554443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=4.3e-05  Score=29.17  Aligned_cols=25  Identities=28%  Similarity=0.507  Sum_probs=18.2

Q ss_pred             ccCcchhhccChHHHHHHHHhhCCC
Q psy2643          84 SCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +|+.|.+.|.+..-|+.|-+.|.++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            5777777777777777777777665

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.7e-05  Score=30.61  Aligned_cols=28  Identities=25%  Similarity=0.632  Sum_probs=19.3

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      +||+|..|...-.++++|..|++..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4677777777767777777777666553

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.0001  Score=28.44  Aligned_cols=26  Identities=50%  Similarity=0.768  Sum_probs=19.9

Q ss_pred             CceeccccccccCChhHHHHHHHHcC
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~~~~   78 (134)
                      +||+|..|...-.+.+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57778888877777788888887764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=7.8e-05  Score=29.19  Aligned_cols=21  Identities=29%  Similarity=0.781  Sum_probs=10.7

Q ss_pred             cccCcchhhccChHHHHHHHH
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      |.|..|+.+|....+|..|++
T Consensus         2 y~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHH
T ss_pred             cccceeeeeEeeccchhHhhh
Confidence            445555555555555555543

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.28  E-value=0.00011  Score=27.52  Aligned_cols=23  Identities=39%  Similarity=0.733  Sum_probs=13.6

Q ss_pred             eeccccccccCChhHHHHHHHHc
Q psy2643          55 HKCVVCGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        55 ~~C~~C~~~~~~~~~l~~h~~~~   77 (134)
                      |+|..|.+.|...+.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45556666666666666665554

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00011  Score=27.50  Aligned_cols=22  Identities=36%  Similarity=0.856  Sum_probs=16.1

Q ss_pred             CcccCcchhhccChHHHHHHHH
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      ||+|..|...|....+|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5777777777777777777764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00021  Score=30.71  Aligned_cols=25  Identities=32%  Similarity=0.693  Sum_probs=21.3

Q ss_pred             CCCceeccccccccCChhHHHHHHH
Q psy2643          51 GEKPHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus        51 ~~~~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      +-+||.|.+|++.|.....+.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4578999999999999999888875

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00016  Score=27.74  Aligned_cols=23  Identities=39%  Similarity=0.826  Sum_probs=18.2

Q ss_pred             CcccCcchhhccChHHHHHHHHh
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRES  104 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      ||+|+.|||.|-...+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            57888888888888888888643

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00026  Score=27.66  Aligned_cols=23  Identities=30%  Similarity=0.762  Sum_probs=16.0

Q ss_pred             ceeccccccccCChhHHHHHHHH
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      ||.|..|...|...++|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            46677777777777777777664

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0002  Score=30.35  Aligned_cols=26  Identities=31%  Similarity=0.625  Sum_probs=15.5

Q ss_pred             CCCccc--CcchhhccChHHHHHHHHhh
Q psy2643          80 YKPFSC--GLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        80 ~~~~~C--~~C~~~f~~~~~l~~H~~~~  105 (134)
                      ++||.|  +-|+..|++...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            566666  44666666666666665544

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00032  Score=27.34  Aligned_cols=25  Identities=36%  Similarity=0.890  Sum_probs=13.0

Q ss_pred             CcccCcchhhccChHHHHHHHHhhC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      .|.|..|...|..+-.|+.|+..|.
T Consensus         4 vftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             eEEeHHHHHHHHHHHhheeeeeccc
Confidence            3455555555555555555555443

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00043  Score=26.96  Aligned_cols=26  Identities=35%  Similarity=0.696  Sum_probs=14.2

Q ss_pred             ceeccccccccCChhHHHHHHHHcCC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTG   79 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~   79 (134)
                      .|.|.+|...|...-.|+.|+-.|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            35555555555555555555555544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00049  Score=28.20  Aligned_cols=28  Identities=29%  Similarity=0.640  Sum_probs=22.4

Q ss_pred             CcccCcchhhccChHHHHHHHHhhCCCC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQHPGS  109 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (134)
                      .|.|..|+|.|..+..+.+|.....+.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~d   31 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGPD   31 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCCC
Confidence            4789999999999998888877665544

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00025  Score=31.63  Aligned_cols=27  Identities=33%  Similarity=0.671  Sum_probs=23.1

Q ss_pred             CCcccCcchhhccChHHHHHHHHhhCC
Q psy2643          81 KPFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      ..|.|..|+|.|+....|++|...|-.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            358999999999999999999877643

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00052  Score=26.49  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=18.8

Q ss_pred             CcccCcchhhccChHHHHHHHHhhC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      |-+|+.|.++.++...|+.|.+.|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4567888888888888888877764

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00028  Score=28.30  Aligned_cols=27  Identities=44%  Similarity=0.764  Sum_probs=17.9

Q ss_pred             Cceeccc--cccccCChhHHHHHH-HHcCC
Q psy2643          53 KPHKCVV--CGKAFSQSSNLITHL-RKHTG   79 (134)
Q Consensus        53 ~~~~C~~--C~~~~~~~~~l~~h~-~~~~~   79 (134)
                      +||.|..  |.+.|...++-.+|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            4666765  777777777777775 55543

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00059  Score=26.69  Aligned_cols=23  Identities=43%  Similarity=0.742  Sum_probs=14.1

Q ss_pred             ceeccccccccCChhHHHHHHHH
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      ||+|..|.......++|..|++.
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHH
Confidence            56666666666666666666554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00066  Score=26.09  Aligned_cols=25  Identities=44%  Similarity=0.760  Sum_probs=20.2

Q ss_pred             CcccCcchhhccChHHHHHHHHhhC
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      .|+||.|+-..+.+++|+.|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            3788888888888888888887655

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.59  E-value=0.00084  Score=26.85  Aligned_cols=22  Identities=36%  Similarity=0.806  Sum_probs=12.7

Q ss_pred             ceeccccccccCChhHHHHHHH
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      ||.|.+|++.|.....+.+|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            3556666666666555555544

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0013  Score=27.85  Aligned_cols=27  Identities=37%  Similarity=0.797  Sum_probs=20.7

Q ss_pred             CCceec--cccccccCChhHHHHHHHHcC
Q psy2643          52 EKPHKC--VVCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus        52 ~~~~~C--~~C~~~~~~~~~l~~h~~~~~   78 (134)
                      ++||.|  +.|+..|.++..|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            678888  448888888888888877664

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.48  E-value=0.001  Score=24.89  Aligned_cols=24  Identities=33%  Similarity=0.713  Sum_probs=17.9

Q ss_pred             cccCcchhhccChHHHHHHHHhhC
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      |.||.|-+.|....++..|.+.-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            677888888888888777776544

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.43  E-value=0.00073  Score=26.38  Aligned_cols=26  Identities=35%  Similarity=0.696  Sum_probs=16.2

Q ss_pred             CcccC--cchhhccChHHHHHHHHhhCC
Q psy2643          82 PFSCG--LCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      ||.|.  -|.|.|.+.-.|.+|...|.+
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            55553  377777777777777665543

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.32  E-value=0.0015  Score=25.46  Aligned_cols=26  Identities=38%  Similarity=0.975  Sum_probs=13.9

Q ss_pred             CccCcc--cccccCChhhHHHHHHhhcC
Q psy2643          26 PYPCQY--CGKRFHQKSDMKKHTYIHTG   51 (134)
Q Consensus        26 ~~~c~~--C~~~~~~~~~l~~h~~~~~~   51 (134)
                      ||.|.+  |.+.|.+...|.+|...|.+
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            445533  55556555555555555544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.0026  Score=23.67  Aligned_cols=22  Identities=36%  Similarity=0.788  Sum_probs=17.7

Q ss_pred             ceeccccccccCChhHHHHHHH
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      ||+|..|...|....+|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6788888888888888888764

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0033  Score=24.45  Aligned_cols=26  Identities=23%  Similarity=0.586  Sum_probs=17.3

Q ss_pred             cccCcchhhccChHHHHHHHHhhCCC
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      |.|..|||...+...++-|+...|..
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             eechhHHHHHhhccCceEEEeecccC
Confidence            56777777777777777776665543

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.14  E-value=0.0031  Score=24.42  Aligned_cols=24  Identities=42%  Similarity=0.707  Sum_probs=12.4

Q ss_pred             ceeccc--cccccCChhHHHHHHHHc
Q psy2643          54 PHKCVV--CGKAFSQSSNLITHLRKH   77 (134)
Q Consensus        54 ~~~C~~--C~~~~~~~~~l~~h~~~~   77 (134)
                      ||.|+-  |+..|..++.|++|.+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            444433  555555555555555443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0016  Score=26.91  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=14.3

Q ss_pred             CcCccccCChHHHHHHHHHcCCC
Q psy2643           2 KQCGKTFKRSSTLSTHLLIHSDT   24 (134)
Q Consensus         2 ~~C~~~f~~~~~l~~h~~~~~~~   24 (134)
                      +--++-|.....|..||++|+++
T Consensus        11 ~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCcchhHHHHHHHHhhcCCC
Confidence            33345566667777777777654

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.07  E-value=0.0018  Score=26.52  Aligned_cols=30  Identities=20%  Similarity=0.603  Sum_probs=23.6

Q ss_pred             CCCCcccCcchhhccChHHHHHHHHhhCCC
Q psy2643          79 GYKPFSCGLCDKAFQRKVDLRRHRESQHPG  108 (134)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (134)
                      ++..|+|..|.+.|...+++.+|...-|..
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk~   34 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHKR   34 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhccc
Confidence            455688999999999999998887666543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.0029  Score=24.16  Aligned_cols=19  Identities=32%  Similarity=0.927  Sum_probs=9.4

Q ss_pred             ccCcccccccCChhhHHHH
Q psy2643          27 YPCQYCGKRFHQKSDMKKH   45 (134)
Q Consensus        27 ~~c~~C~~~~~~~~~l~~h   45 (134)
                      |.|+.||+.+..+.+|..|
T Consensus         2 f~c~kcgkcyfrkenlleh   20 (28)
T d2dlqa2           2 FECPKCGKCYFRKENLLEH   20 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHH
T ss_pred             CccccchhhhhhHhHHHHH
Confidence            4455555555555444444

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.75  E-value=0.0024  Score=25.85  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             CcccCcchhhccChHHHHHHHHh
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRES  104 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      .|.|+.||-.|++.+.|..|+.-
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            48899999999999999988754

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0059  Score=23.42  Aligned_cols=21  Identities=29%  Similarity=0.631  Sum_probs=15.0

Q ss_pred             CCcCccccCChHHHHHHHHHc
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIH   21 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~   21 (134)
                      |++|.+...++..|+.|-++|
T Consensus         5 c~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           5 CSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             CSSSSCEESSHHHHHHHHGGG
T ss_pred             CcccccccCcHHHHHHhhccc
Confidence            667777777777777776665

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0018  Score=31.58  Aligned_cols=23  Identities=26%  Similarity=0.493  Sum_probs=16.3

Q ss_pred             CcccCcchhhccChHHHHHHHHh
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRES  104 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (134)
                      .|.|..|+|.|.+...|..|++.
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            46777777777777777777643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0067  Score=26.88  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=21.1

Q ss_pred             ceeccccccccCChhHHHHHHHHcC
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHT   78 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~   78 (134)
                      -|.|..|++.|.....|+.|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4789999999999999998887764

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.13  E-value=0.013  Score=25.86  Aligned_cols=28  Identities=32%  Similarity=0.636  Sum_probs=15.3

Q ss_pred             CCCcccCcchhhccChHHHHHHHHhhCC
Q psy2643          80 YKPFSCGLCDKAFQRKVDLRRHRESQHP  107 (134)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (134)
                      +.|-.|+.|+....+..+|++|..+-|=
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            3455555565555555556665554443

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.10  E-value=0.0074  Score=22.87  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=16.8

Q ss_pred             CcchhhccChHHHHHHHHhh
Q psy2643          86 GLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        86 ~~C~~~f~~~~~l~~H~~~~  105 (134)
                      ..|+++|....+|+.|+-.|
T Consensus         7 e~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeecc
Confidence            35999999999999998765

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.76  E-value=0.012  Score=23.64  Aligned_cols=23  Identities=26%  Similarity=0.570  Sum_probs=18.1

Q ss_pred             CccCcccccccCChhhHHHHHHh
Q psy2643          26 PYPCQYCGKRFHQKSDMKKHTYI   48 (134)
Q Consensus        26 ~~~c~~C~~~~~~~~~l~~h~~~   48 (134)
                      .|.|+-||-.|.+.+.|..|+..
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            47888888888888888887654

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.035  Score=22.81  Aligned_cols=31  Identities=19%  Similarity=0.446  Sum_probs=24.8

Q ss_pred             CcccCcchhhccChHHHHHHHHhhCCCCCCc
Q psy2643          82 PFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ  112 (134)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (134)
                      ...|..|.+.|.+.-++-+|+...|.+....
T Consensus         3 kltclecmrtfkssfsiwrhqvevhnqn~m~   33 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQVEVHNQNNMA   33 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHHTSCCCCCC
T ss_pred             cccHHHHHHHHHHHHHHHHhhheeccccccC
Confidence            3578889999999888889998888776543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.018  Score=22.07  Aligned_cols=20  Identities=35%  Similarity=0.695  Sum_probs=16.9

Q ss_pred             cCccccCChHHHHHHHHHcC
Q psy2643           3 QCGKTFKRSSTLSTHLLIHS   22 (134)
Q Consensus         3 ~C~~~f~~~~~l~~h~~~~~   22 (134)
                      -|++.|...+.++.|+.+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            48899999999999988773

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.98  E-value=0.035  Score=24.44  Aligned_cols=25  Identities=40%  Similarity=0.680  Sum_probs=16.7

Q ss_pred             CCceeccccccccCChhHHHHHHHH
Q psy2643          52 EKPHKCVVCGKAFSQSSNLITHLRK   76 (134)
Q Consensus        52 ~~~~~C~~C~~~~~~~~~l~~h~~~   76 (134)
                      +.|..|++|+.+.....+|.+|+..
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHH
Confidence            4456677777777777777777664

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.62  E-value=0.017  Score=24.48  Aligned_cols=26  Identities=27%  Similarity=0.591  Sum_probs=18.1

Q ss_pred             CCceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        52 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      ++.|.|.+||..+.             ++-|-.||.|+.
T Consensus         3 ~~~~~C~vCG~i~~-------------g~~P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYTAV-------------DEAPEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCEEE-------------SCCCSBCTTTCC
T ss_pred             CcEEECCCCCCEec-------------CCCCCcCCCCCC
Confidence            34588888987753             345568888884

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.024  Score=21.83  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=16.2

Q ss_pred             CcchhhccChHHHHHHHHhhC
Q psy2643          86 GLCDKAFQRKVDLRRHRESQH  106 (134)
Q Consensus        86 ~~C~~~f~~~~~l~~H~~~~h  106 (134)
                      +-||+.|+++.-|..|.+-.|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            458999999988888876543

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=93.22  E-value=0.024  Score=23.84  Aligned_cols=26  Identities=31%  Similarity=0.682  Sum_probs=17.4

Q ss_pred             CCceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        52 ~~~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      ++-|.|.+||....             ++-|-.||.|+.
T Consensus         3 ~~~~vC~vCGyi~~-------------g~~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYIHK-------------GEDFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCEEE-------------SSCCSBCTTTCC
T ss_pred             CCEEECCCCCCEee-------------CCCCCcCCCCCC
Confidence            45688888887643             334557888874

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.17  E-value=0.048  Score=21.41  Aligned_cols=18  Identities=22%  Similarity=0.621  Sum_probs=7.4

Q ss_pred             cccccCChhhHHHHHHhh
Q psy2643          32 CGKRFHQKSDMKKHTYIH   49 (134)
Q Consensus        32 C~~~~~~~~~l~~h~~~~   49 (134)
                      |+..|.....|+.|+-.|
T Consensus        11 C~A~ynk~wkL~AHLckH   28 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKH   28 (31)
T ss_dssp             GCCEESSHHHHHHHHHHH
T ss_pred             cchhhccchhhhHHhhhh
Confidence            444444444444444333

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.02  Score=27.73  Aligned_cols=23  Identities=43%  Similarity=0.897  Sum_probs=18.8

Q ss_pred             CceeccccccccCChhHHHHHHH
Q psy2643          53 KPHKCVVCGKAFSQSSNLITHLR   75 (134)
Q Consensus        53 ~~~~C~~C~~~~~~~~~l~~h~~   75 (134)
                      ..|.|..|++.|.+...|..|.+
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTT
T ss_pred             CEEecccccCccCCHHHHHHHHc
Confidence            45788889999999888888765

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.92  E-value=0.086  Score=21.66  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=14.5

Q ss_pred             CCcCccccCChHHHHHHHHHc
Q psy2643           1 CKQCGKTFKRSSTLSTHLLIH   21 (134)
Q Consensus         1 C~~C~~~f~~~~~l~~h~~~~   21 (134)
                      |..|+..|.....+..|.+..
T Consensus        11 C~~CDI~Fn~~~T~~aHKk~Y   31 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHHHT
T ss_pred             HhhCCceehhHHHHHHHHHhc
Confidence            566777777777777776544

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.95  E-value=0.06  Score=25.55  Aligned_cols=36  Identities=14%  Similarity=0.502  Sum_probs=18.0

Q ss_pred             CCccCcccccccCChhhHHHHHHhhcCCCceeccccccc
Q psy2643          25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKA   63 (134)
Q Consensus        25 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~   63 (134)
                      ..|.||.|++.|....   .-.........|.|..|+..
T Consensus        13 ~~y~Cp~C~~~ys~Ld---a~~L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          13 ASFKCPVCSSTFTDLE---ANQLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SEEECSSSCCEEEHHH---HHHHEETTTTEEBCSSSCCB
T ss_pred             CceECCCCCCCcchhh---HHHhcCcCCCeEEecCCCCE
Confidence            3466666666665432   22223333445666666543

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=89.51  E-value=0.13  Score=29.43  Aligned_cols=38  Identities=18%  Similarity=0.441  Sum_probs=27.8

Q ss_pred             hhHHHHHHHHcCCCC-------CcccCcchhhccChHHHHHHHHhh
Q psy2643          67 SSNLITHLRKHTGYK-------PFSCGLCDKAFQRKVDLRRHRESQ  105 (134)
Q Consensus        67 ~~~l~~h~~~~~~~~-------~~~C~~C~~~f~~~~~l~~H~~~~  105 (134)
                      .+.|..|++..--..       -|+|..||| |....+|.+|++.|
T Consensus       124 GgrlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~H  168 (218)
T d2czra1         124 GAALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREH  168 (218)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTT
T ss_pred             hHHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHc
Confidence            456778887543221       389999997 67888999999876

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=89.49  E-value=0.049  Score=24.08  Aligned_cols=35  Identities=17%  Similarity=0.429  Sum_probs=16.9

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchh
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDK   90 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   90 (134)
                      .|.|..|+..+.....=  -.....-...|.||.|+.
T Consensus         3 ~y~C~~CgyiYd~~~Gd--gt~Fe~LP~dw~CP~C~a   37 (45)
T d6rxna_           3 KYVCNVCGYEYDPAEHD--NVPFDQLPDDWCCPVCGV   37 (45)
T ss_dssp             CEEETTTCCEECGGGGT--TCCGGGSCTTCBCTTTCC
T ss_pred             CeEeCCCCeEECcccCC--CCCHHHCCCCCCCcCCCC
Confidence            46777777766443210  000011123477888873

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.05  E-value=0.14  Score=26.81  Aligned_cols=28  Identities=29%  Similarity=0.693  Sum_probs=19.4

Q ss_pred             ceeccccccccCChhHHHHHHHHcCCCCCcccCcchhhc
Q psy2643          54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAF   92 (134)
Q Consensus        54 ~~~C~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   92 (134)
                      |-.|..||++|...           -.+|-+||.|...+
T Consensus        67 Pp~CrkCGfvFr~~-----------~kkPSRCP~CKSE~   94 (105)
T d2gmga1          67 PAQCRKCGFVFKAE-----------INIPSRCPKCKSEW   94 (105)
T ss_dssp             CCBBTTTCCBCCCC-----------SSCCSSCSSSCCCC
T ss_pred             ChhhhhcCCeeccc-----------CCCCCCCCCCCCcc
Confidence            34788899988431           24678899987543

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.97  E-value=0.51  Score=18.01  Aligned_cols=17  Identities=29%  Similarity=0.735  Sum_probs=8.5

Q ss_pred             chhhccChHHHHHHHHh
Q psy2643          88 CDKAFQRKVDLRRHRES  104 (134)
Q Consensus        88 C~~~f~~~~~l~~H~~~  104 (134)
                      |...|....+++.|...
T Consensus        10 cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3          10 CDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             CCCEESSHHHHHHHHHH
T ss_pred             cceEEeehHHHHHHHhh
Confidence            44555555555555433

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.50  E-value=0.12  Score=22.80  Aligned_cols=21  Identities=24%  Similarity=0.586  Sum_probs=18.0

Q ss_pred             cccCcchhhccChHHHHHHHH
Q psy2643          83 FSCGLCDKAFQRKVDLRRHRE  103 (134)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~  103 (134)
                      -.|..|+..|+.+.+++.|+-
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhh
Confidence            679999999998888988873

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.62  E-value=0.23  Score=20.86  Aligned_cols=11  Identities=18%  Similarity=0.549  Sum_probs=5.7

Q ss_pred             ceecccccccc
Q psy2643          54 PHKCVVCGKAF   64 (134)
Q Consensus        54 ~~~C~~C~~~~   64 (134)
                      .|.|+.|+.-+
T Consensus        20 l~vCPeC~hEW   30 (38)
T d2akla2          20 LLVCPECAHEW   30 (38)
T ss_dssp             SEEETTTTEEE
T ss_pred             EEECCcccCcC
Confidence            45555555443

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.36  E-value=0.47  Score=17.44  Aligned_cols=19  Identities=21%  Similarity=0.389  Sum_probs=13.0

Q ss_pred             ccCcchhhccChHHHHHHH
Q psy2643          84 SCGLCDKAFQRKVDLRRHR  102 (134)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~  102 (134)
                      .||+|...|.+..--+.|.
T Consensus         2 vcpycslrf~sp~lk~ehe   20 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEHE   20 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHhh
Confidence            4788888887766555554

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=80.23  E-value=0.23  Score=20.84  Aligned_cols=10  Identities=10%  Similarity=0.189  Sum_probs=4.6

Q ss_pred             cCcccccccC
Q psy2643          28 PCQYCGKRFH   37 (134)
Q Consensus        28 ~c~~C~~~~~   37 (134)
                      .|+.||..|.
T Consensus         4 vc~~cG~~Yh   13 (37)
T d2ak3a2           4 IHPGSGRVYN   13 (37)
T ss_dssp             EETTTTEEEE
T ss_pred             eeCCcCChhh
Confidence            3444544443